BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033913
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HAZ|A Chain A, Crystal Structure Of Bifunctional Proline Utilization A
(Puta) Protein
pdb|3HAZ|B Chain B, Crystal Structure Of Bifunctional Proline Utilization A
(Puta) Protein
Length = 1001
Score = 32.7 bits (73), Expect = 0.058, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 56 VTREIFGPFQIVTEYKQDQLPLVLNALERMHAHLTAAVVS 95
+T E+FGP V Y+ + L VL A+ER LT V S
Sbjct: 883 LTEEVFGPILHVVRYRPENLERVLRAIERTGYGLTLGVHS 922
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|C Chain C, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I55|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IHJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 450
Score = 30.0 bits (66), Expect = 0.39, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 10 KVPGSKLLFGGEELKNHSIPSIYGALK--PTAVFVPLEEILKDGNYELVTREIFGPFQIV 67
++P K + GG++ N + S GA K P AVFV LE + D R++F P Q++
Sbjct: 35 QMPSDKTIGGGDDSFN-TFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI 93
Query: 68 T 68
T
Sbjct: 94 T 94
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 448
Score = 30.0 bits (66), Expect = 0.39, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 10 KVPGSKLLFGGEELKNHSIPSIYGALK--PTAVFVPLEEILKDGNYELVTREIFGPFQIV 67
++P K + GG++ N + S GA K P AVFV LE + D R++F P Q++
Sbjct: 35 QMPSDKTIGGGDDSFN-TFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI 93
Query: 68 T 68
T
Sbjct: 94 T 94
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|A Chain A, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|C Chain C, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|A Chain A, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|C Chain C, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|A Chain A, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|C Chain C, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|A Chain A, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|C Chain C, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|A Chain A, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|C Chain C, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 451
Score = 30.0 bits (66), Expect = 0.39, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 10 KVPGSKLLFGGEELKNHSIPSIYGALK--PTAVFVPLEEILKDGNYELVTREIFGPFQIV 67
++P K + GG++ N + S GA K P AVFV LE + D R++F P Q++
Sbjct: 35 QMPSDKTIGGGDDSFN-TFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI 93
Query: 68 T 68
T
Sbjct: 94 T 94
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|C Chain C, Gtp-Tubulin In Complex With A Darpin
Length = 437
Score = 30.0 bits (66), Expect = 0.39, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 10 KVPGSKLLFGGEELKNHSIPSIYGALK--PTAVFVPLEEILKDGNYELVTREIFGPFQIV 67
++P K + GG++ N + S GA K P AVFV LE + D R++F P Q++
Sbjct: 35 QMPSDKTIGGGDDSFN-TFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI 93
Query: 68 T 68
T
Sbjct: 94 T 94
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound
Kinesin-5 Motor Domain In The Rigor State
Length = 452
Score = 30.0 bits (66), Expect = 0.39, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 10 KVPGSKLLFGGEELKNHSIPSIYGALK--PTAVFVPLEEILKDGNYELVTREIFGPFQIV 67
++P K + GG++ N + S GA K P AVFV LE + D R++F P Q++
Sbjct: 35 QMPSDKTIGGGDDSFN-TFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI 93
Query: 68 T 68
T
Sbjct: 94 T 94
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 30.0 bits (66), Expect = 0.39, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 10 KVPGSKLLFGGEELKNHSIPSIYGALK--PTAVFVPLEEILKDGNYELVTREIFGPFQIV 67
++P K + GG++ N + S GA K P AVFV LE + D R++F P Q++
Sbjct: 35 QMPSDKTIGGGDDSFN-TFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI 93
Query: 68 T 68
T
Sbjct: 94 T 94
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From
Zinc-Induced Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin
(2xrp) Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin
(2xrp) Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin
(2xrp) Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin
(2xrp) Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain -
Tubulin Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 30.0 bits (66), Expect = 0.39, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 10 KVPGSKLLFGGEELKNHSIPSIYGALK--PTAVFVPLEEILKDGNYELVTREIFGPFQIV 67
++P K + GG++ N + S GA K P AVFV LE + D R++F P Q++
Sbjct: 35 QMPSDKTIGGGDDSFN-TFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI 93
Query: 68 T 68
T
Sbjct: 94 T 94
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 30.0 bits (66), Expect = 0.39, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 10 KVPGSKLLFGGEELKNHSIPSIYGALK--PTAVFVPLEEILKDGNYELVTREIFGPFQIV 67
++P K + GG++ N + S GA K P AVFV LE + D R++F P Q++
Sbjct: 35 QMPSDKTIGGGDDSFN-TFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI 93
Query: 68 T 68
T
Sbjct: 94 T 94
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|A Chain A, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|C Chain C, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|A Chain A, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|C Chain C, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|A Chain A, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|C Chain C, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F61|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|4F61|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|4F61|E Chain E, Tubulin:stathmin-Like Domain Complex
pdb|4F61|G Chain G, Tubulin:stathmin-Like Domain Complex
pdb|4F6R|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|A Chain A, Tubulin-colchicine-ustiloxin: Stathmin-like Domain
Complex
pdb|3UT5|C Chain C, Tubulin-colchicine-ustiloxin: Stathmin-like Domain
Complex
pdb|4EB6|A Chain A, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|C Chain C, Tubulin-vinblastine: Stathmin-like Complex
pdb|4I50|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4IIJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
Length = 451
Score = 30.0 bits (66), Expect = 0.39, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 10 KVPGSKLLFGGEELKNHSIPSIYGALK--PTAVFVPLEEILKDGNYELVTREIFGPFQIV 67
++P K + GG++ N + S GA K P AVFV LE + D R++F P Q++
Sbjct: 35 QMPSDKTIGGGDDSFN-TFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI 93
Query: 68 T 68
T
Sbjct: 94 T 94
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 30.0 bits (66), Expect = 0.39, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 10 KVPGSKLLFGGEELKNHSIPSIYGALK--PTAVFVPLEEILKDGNYELVTREIFGPFQIV 67
++P K + GG++ N + S GA K P AVFV LE + D R++F P Q++
Sbjct: 35 QMPSDKTIGGGDDSFN-TFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI 93
Query: 68 T 68
T
Sbjct: 94 T 94
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|C Chain C, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|A Chain A, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|C Chain C, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
Length = 449
Score = 28.5 bits (62), Expect = 0.98, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 10 KVPGSKLLFGGEELKNHSIPSIYGALK--PTAVFVPLEEILKDGNYELVTREIFGPFQIV 67
++P K + GG++ N + S GA K P AVFV LE + D R++F P Q++
Sbjct: 35 QMPSDKTIGGGDDSFN-TFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI 93
Query: 68 T 68
+
Sbjct: 94 S 94
>pdb|3V9J|A Chain A, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Sulfate Ion
pdb|3V9J|B Chain B, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Sulfate Ion
pdb|3V9K|A Chain A, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With The Product Glutamate
pdb|3V9K|B Chain B, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With The Product Glutamate
pdb|3V9L|A Chain A, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Nad+
pdb|3V9L|B Chain B, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Nad+
pdb|4E3X|A Chain A, Crystal Structure Of Mus Musculus
1-Pyrroline-5-Carboxylate Dehydrogenase Cryoprotected In
Proline
pdb|4E3X|B Chain B, Crystal Structure Of Mus Musculus
1-Pyrroline-5-Carboxylate Dehydrogenase Cryoprotected In
Proline
Length = 563
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 49 KDGNYELVTREIFGPFQIVTEYKQDQLPLVLNALERMHAH-LTAAVVSNDPLFLQ 102
KD ++ EIFGP V Y D+ L ++ ++ LT AV + D +Q
Sbjct: 437 KDPQEPIMKEEIFGPVLTVYVYPDDKYRETLKLVDSTTSYGLTGAVFAQDKAIVQ 491
>pdb|3V9I|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
Length = 566
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 49 KDGNYELVTREIFGPFQIVTEYKQDQLPLVLNALERMHAH-LTAAVVSNDPLFLQ 102
KD ++ EIFGP V Y D+ L ++ ++ LT AV S D +Q
Sbjct: 440 KDPQEPIMKEEIFGPVLSVYVYPDDKYKETLQLVDSTTSYGLTGAVFSQDKDVVQ 494
>pdb|3V9H|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
Length = 566
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 49 KDGNYELVTREIFGPFQIVTEYKQDQLPLVLNALERMHAH-LTAAVVSNDPLFLQ 102
KD ++ EIFGP V Y D+ L ++ ++ LT AV S D +Q
Sbjct: 440 KDPQEPIMKEEIFGPVLSVYVYPDDKYKETLQLVDSTTSYGLTGAVFSQDKDVVQ 494
>pdb|3V9G|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
Length = 566
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 49 KDGNYELVTREIFGPFQIVTEYKQDQLPLVLNALERMHAH-LTAAVVSNDPLFLQ 102
KD ++ EIFGP V Y D+ L ++ ++ LT AV S D +Q
Sbjct: 440 KDPQEPIMKEEIFGPVLSVYVYPDDKYKETLQLVDSTTSYGLTGAVFSQDKDVVQ 494
>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.28 A Resolution
pdb|4G34|A Chain A, Crystal Structure Of Gsk6924 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.70 A Resolution
Length = 299
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 26 HSIPSIYGALKPTAVFVPLEEILKDGNYELVT 57
HS ++ LKP+ +F +++++K G++ LVT
Sbjct: 135 HSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVT 166
>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain
Length = 332
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 26 HSIPSIYGALKPTAVFVPLEEILKDGNYELVT 57
HS ++ LKP+ +F +++++K G++ LVT
Sbjct: 181 HSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVT 212
>pdb|3RKO|L Chain L, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From E. Coli At 3.0 Angstrom Resolution
pdb|3RKO|B Chain B, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From E. Coli At 3.0 Angstrom Resolution
Length = 613
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 38 TAVFVPLEEILK----DGNYELVTREIFGPFQIVTEYKQDQLPLVLNALERMHAHLTAAV 93
TA F +EIL +G+ L+ + G F + + Y + +V + E++HAH V
Sbjct: 393 TAGFFSKDEILAGAMANGHINLMVAGLVGAF-MTSLYTFRMIFIVFHGKEQIHAHAVKGV 451
Query: 94 VSNDPLFLQLQL 105
+ PL + L L
Sbjct: 452 THSLPLIVLLIL 463
>pdb|2D4E|A Chain A, Crystal Structure Of The Hpcc From Thermus Thermophilus
Hb8
pdb|2D4E|B Chain B, Crystal Structure Of The Hpcc From Thermus Thermophilus
Hb8
pdb|2D4E|C Chain C, Crystal Structure Of The Hpcc From Thermus Thermophilus
Hb8
pdb|2D4E|D Chain D, Crystal Structure Of The Hpcc From Thermus Thermophilus
Hb8
Length = 515
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 3 EHMNKLL------KVPGSKLLFGGEELKNHSIPSIYGALKPTAVFVPLEEILKDGNYELV 56
EH+ ++L K G++LL GGE K S G ++ + + + ++
Sbjct: 351 EHLQRVLGYVEAGKREGARLLVGGERAKT----SFRGEDLSRGNYLLPTVFVGENHMKIA 406
Query: 57 TREIFGPFQIVTEYKQDQLPL 77
EIFGP + +K ++ L
Sbjct: 407 QEEIFGPVLVAIPFKDEEEAL 427
>pdb|4GNZ|A Chain A, Crystal Structure Of The C707s Mutant Of C-terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadp
pdb|4GNZ|B Chain B, Crystal Structure Of The C707s Mutant Of C-terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadp
pdb|4GNZ|C Chain C, Crystal Structure Of The C707s Mutant Of C-terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadp
pdb|4GNZ|D Chain D, Crystal Structure Of The C707s Mutant Of C-terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadp
pdb|4GO0|A Chain A, Crystal Structure Of The C707s Mutant Of C-terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadph
pdb|4GO0|B Chain B, Crystal Structure Of The C707s Mutant Of C-terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadph
pdb|4GO0|C Chain C, Crystal Structure Of The C707s Mutant Of C-terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadph
pdb|4GO0|D Chain D, Crystal Structure Of The C707s Mutant Of C-terminal Domain
Of 10'formyltetrahydrofolate Dehydrogenase In Complex
With Nadph
Length = 517
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 1 MLEHMNKLLKVPGSKLLFGGEELKNHSIPSIYGALKPTAVFVPLEEILKDGNYELVTREI 60
++E+ + +K G+ L+ GG ++ P + +PT VF +E+ + + E
Sbjct: 373 LVEYCQRGVK-EGATLVCGGNQVPR---PGFF--FQPT-VFTDVEDHMY-----IAKEES 420
Query: 61 FGPFQIVTEYKQDQLPLVLNALERMHAHLTAAVVSND 97
FGP I++ + + VL+ L + V + D
Sbjct: 421 FGPIMIISRFADGDVDAVLSRANATEFGLASGVFTRD 457
>pdb|3UA3|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5 In Complex With Sah
pdb|3UA3|B Chain B, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5 In Complex With Sah
Length = 745
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 14 SKLL--FGGEELKNHSIPSIYGALKPTAVFVP 43
S+LL FG EL + + G LKPT + +P
Sbjct: 501 SELLGSFGDNELSPECLDGVTGFLKPTTISIP 532
>pdb|3UA4|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5
pdb|3UA4|B Chain B, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5
Length = 745
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 14 SKLL--FGGEELKNHSIPSIYGALKPTAVFVP 43
S+LL FG EL + + G LKPT + +P
Sbjct: 501 SELLGSFGDNELSPECLDGVTGFLKPTTISIP 532
>pdb|3O98|A Chain A, Glutathionylspermidine SynthetaseAMIDASE C59A COMPLEX WITH
ADP AND Gsp
pdb|3O98|B Chain B, Glutathionylspermidine SynthetaseAMIDASE C59A COMPLEX WITH
ADP AND Gsp
Length = 619
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 43 PLEEILKDGNYELVTREIFGPFQIVTEYKQDQLPLVLNALERMHAHLTAAVVSNDPLF 100
PL+ N +++ ++ + + +TE + +L N L M+ H T V+ +D L
Sbjct: 232 PLQNAYVQANGQVINQDPYH-YYTITESAEQELIKATNELHLMYLHATDKVLKDDNLL 288
>pdb|2IO7|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND AMPPNP
pdb|2IO7|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND AMPPNP
pdb|2IO8|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP
pdb|2IO8|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP
pdb|2IO9|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ ,GSH AND ADP
pdb|2IO9|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ ,GSH AND ADP
pdb|2IOA|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP AND
Phosphinate Inhibitor
pdb|2IOA|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP AND
Phosphinate Inhibitor
pdb|2IOB|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE APO PROTEIN
pdb|2IOB|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE APO PROTEIN
Length = 619
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 43 PLEEILKDGNYELVTREIFGPFQIVTEYKQDQLPLVLNALERMHAHLTAAVVSNDPLF 100
PL+ N +++ ++ + + +TE + +L N L M+ H T V+ +D L
Sbjct: 232 PLQNAYVQANGQVINQDPYH-YYTITESAEQELIKATNELHLMYLHATDKVLKDDNLL 288
>pdb|3GXV|A Chain A, Three-Dimensional Structure Of N-Terminal Domain Of Dnab
Helicase From Helicobacter Pylori And Its Interactions
With Primase
pdb|3GXV|B Chain B, Three-Dimensional Structure Of N-Terminal Domain Of Dnab
Helicase From Helicobacter Pylori And Its Interactions
With Primase
Length = 123
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 2 LEHMNKLLKVPGSKLLFGGEELKNHSIPSIYGALKPTAVFVP 43
L+H+ +L + +++ G L NH I ++ L+P+ + P
Sbjct: 4 LKHLQQLQNI--ERIVLSGIVLANHKIEEVHSVLEPSDFYYP 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,325,115
Number of Sequences: 62578
Number of extensions: 126929
Number of successful extensions: 334
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 44
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)