BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033914
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFJ|B Chain B, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFM|A Chain A, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFM|B Chain B, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFN|A Chain A, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
pdb|4HFN|B Chain B, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
Length = 351
Score = 165 bits (417), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 74/109 (67%), Positives = 96/109 (88%)
Query: 1 MLDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKF 60
MLDAV +NM++ GRIAVCGMISQYNLE++EGVHNL ++ KRIRMEGFL D+YH YPK+
Sbjct: 235 MLDAVLVNMKLYGRIAVCGMISQYNLEQTEGVHNLFCLITKRIRMEGFLVFDYYHLYPKY 294
Query: 61 LELVMRAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVVIARE 109
LE+V+ IK GK+VYVED+A GLE AP+ALVG+F+G+N+GKQ+V+++RE
Sbjct: 295 LEMVIPQIKAGKVVYVEDVAHGLESAPTALVGLFSGRNIGKQVVMVSRE 343
>pdb|2J3H|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3H|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3I|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3I|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3J|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3J|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3K|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
pdb|2J3K|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
Length = 345
Score = 159 bits (402), Expect = 4e-40, Method: Composition-based stats.
Identities = 73/109 (66%), Positives = 90/109 (82%)
Query: 1 MLDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKF 60
MLDAV +NM + GRIAVCGMISQYNLE EGVHNL ++ KR R++GF+ DFY +Y KF
Sbjct: 237 MLDAVLVNMNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKF 296
Query: 61 LELVMRAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVVIARE 109
LE V+ I+EGK+ YVED+A+GLEKAP ALVG+F G+NVGKQ+VV+ARE
Sbjct: 297 LEFVLPHIREGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVVVVARE 345
>pdb|4B7C|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa
Length = 336
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 1 MLDAVRLNMRIRGRIAVCGMISQYN-LEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPK 59
+LD V + + RI +CG ISQYN E G N + ++ R RMEG + D+ ++P+
Sbjct: 230 ILDTVLTRIAFKARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVMDYAQRFPE 289
Query: 60 FLELVMRAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGK 101
L+ + + EGKL EDI EGLE P L+ +F+G+N GK
Sbjct: 290 GLKEMATWLAEGKLQSREDIVEGLETFPETLLKLFSGENFGK 331
>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|B Chain B, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|C Chain C, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|D Chain D, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
Length = 349
Score = 59.3 bits (142), Expect = 5e-10, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 9 MRIRGRIAVCGMISQYNLEKSEGVHNLMQVV-GKRIRMEGFLA----GDFYHQYPKFLEL 63
M+ GRIA+CG IS YN ++V + +RME F+ GD K L+
Sbjct: 250 MKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQ---KALKD 306
Query: 64 VMRAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLV 104
+++ + EGK+ Y E I EG E P+A +G+ G N+GK +V
Sbjct: 307 LLKWVLEGKIQYKEYIIEGFENMPAAFMGMLKGDNLGKTIV 347
>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|B Chain B, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|C Chain C, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|D Chain D, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
Length = 328
Score = 59.3 bits (142), Expect = 5e-10, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 9 MRIRGRIAVCGMISQYNLEKSEGVHNLMQVV-GKRIRMEGFLA----GDFYHQYPKFLEL 63
M+ GRIA+CG IS YN ++V + +RME F+ GD K L+
Sbjct: 229 MKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQ---KALKD 285
Query: 64 VMRAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLV 104
+++ + EGK+ Y E I EG E P+A +G+ G N+GK +V
Sbjct: 286 LLKWVLEGKIQYKEYIIEGFENMPAAFMGMLKGDNLGKTIV 326
>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3T|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3U|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3U|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3V|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|1V3V|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|2DM6|A Chain A, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
pdb|2DM6|B Chain B, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
Length = 333
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 8/108 (7%)
Query: 2 LDAVRLNMRIRGRIAVCGMISQYN-LEKSEGVHNLMQVVGKRIRMEGFLA----GDFYHQ 56
L+ V M+ G+IA+CG IS YN +++ + ++ K++R+EGF+ GD
Sbjct: 227 LNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVRE- 285
Query: 57 YPKFLELVMRAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLV 104
K L +M+ + EGK+ Y E + +G E P+A + + G N+GK +V
Sbjct: 286 --KALRDLMKWVLEGKIQYHEHVTKGFENMPAAFIEMLNGANLGKAVV 331
>pdb|2ZB4|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadp And 15-Keto-Pge2
pdb|2ZB7|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadph And Nicotinamide
pdb|2ZB8|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadp And Indomethacin
Length = 357
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 3 DAVRLNMRIRGRIAVCGMISQYNLEK------SEGVHNLMQVVGKRIRMEGFLAGDFYHQ 56
D V M I +CG ISQYN + S + + + + I E FL ++ +
Sbjct: 244 DTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQK--ERNITRERFLVLNYKDK 301
Query: 57 Y-PKFLELVMRAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVVIARE 109
+ P L+L + KEGKL E + GLE +A + TG N+GKQ+V I+ E
Sbjct: 302 FEPGILQL-SQWFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCISEE 354
>pdb|2W4Q|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
18beta-Glycyrrhetinic Acid
pdb|2VNA|A Chain A, Structure Of Human Zinc-Binding Alcohol Dehydrogenase 1 (
Zadh1)
pdb|2W98|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
Phenylbutazone
pdb|2W98|B Chain B, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
Phenylbutazone
Length = 357
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 3 DAVRLNMRIRGRIAVCGMISQYNLEK------SEGVHNLMQVVGKRIRMEGFLAGDFYHQ 56
D V M I +CG ISQYN + S + + + + I E FL ++ +
Sbjct: 239 DTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQK--ERNITRERFLVLNYKDK 296
Query: 57 Y-PKFLELVMRAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVVIARE 109
+ P L+L + KEGKL E + GLE +A + TG N+GKQ+V I+ E
Sbjct: 297 FEPGILQL-SQWFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCISEE 349
>pdb|1VJ1|A Chain A, Crystal Structure Of Putative Nadph-Dependent
Oxidoreductase From Mus Musculus At 2.10 A Resolution
Length = 363
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 15 IAVCGMISQYNLEKSEGVHNLMQVVGKR----IRMEGFLAGDFYHQY-PKFLELVMRAIK 69
I +CG ISQYN + V R I E F ++ ++ P L+L + K
Sbjct: 262 IILCGQISQYNKDVPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFEPGILQL-SQWFK 320
Query: 70 EGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVVIARE 109
EGKL E +A+GLE A TG NVGKQ+V I+ +
Sbjct: 321 EGKLKVKETVAKGLENXGVAFQSXXTGGNVGKQIVCISED 360
>pdb|2ZB3|A Chain A, Crystal Structure Of Mouse 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadph
Length = 353
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 3 DAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKR----IRMEGFLAGDFYHQY- 57
+AV M I +CG ISQY+ + V R I E F ++ ++
Sbjct: 240 NAVISQMNENSHIILCGQISQYSNDVPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFE 299
Query: 58 PKFLELVMRAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVVIARE 109
P L+L + KEGKL E +A+GLE A + TG NVGKQ+V I+ +
Sbjct: 300 PGILQL-SQWFKEGKLKVKETMAKGLENMGVAFQSMMTGGNVGKQIVCISED 350
>pdb|4A7P|A Chain A, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From
Sphingomonas Elodea
pdb|4A7P|B Chain B, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From
Sphingomonas Elodea
Length = 446
Score = 28.5 bits (62), Expect = 0.96, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 58 PKFLELVMRAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVG 100
P LV +K G+L + D+AEG++ A + + + T G
Sbjct: 57 PGLDALVASNVKAGRLSFTTDLAEGVKDADAVFIAVGTPSRRG 99
>pdb|1CVR|A Chain A, Crystal Structure Of The Arg Specific Cysteine Proteinase
Gingipain R (Rgpb)
Length = 435
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 51 GDFYHQYPKFLELVMRAIKEGK 72
GDF P F E +MRA K+GK
Sbjct: 247 GDFLFSMPCFAEALMRAQKDGK 268
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 17/72 (23%)
Query: 55 HQYPKFLELVMRAIK------------EG--KLVYVEDIA---EGLEKAPSALVGIFTGQ 97
HQ P FL R I EG V D A E L+ AP+ +VG+ G
Sbjct: 62 HQVPAFLAAGYRCITFDNRGIGATENAEGFTTQTMVADTAALIETLDIAPARVVGVSMGA 121
Query: 98 NVGKQLVVIARE 109
+ ++L+V+A E
Sbjct: 122 FIAQELMVVAPE 133
>pdb|3KKE|A Chain A, Crystal Structure Of A Laci Family Transcriptional
Regulator From Mycobacterium Smegmatis
pdb|3KKE|B Chain B, Crystal Structure Of A Laci Family Transcriptional
Regulator From Mycobacterium Smegmatis
pdb|3KKE|C Chain C, Crystal Structure Of A Laci Family Transcriptional
Regulator From Mycobacterium Smegmatis
pdb|3KKE|D Chain D, Crystal Structure Of A Laci Family Transcriptional
Regulator From Mycobacterium Smegmatis
Length = 303
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
Query: 4 AVRLNMRIRGRIAVCGMISQYNLEKSEGV--HNLMQVVGKRIRMEGFLAGDFYHQYPK-- 59
AV +N R+ GR+ + Q K G+ +L+ + RI F++G H +
Sbjct: 97 AVTINSRVPGRVGSVILDDQ----KGGGIATEHLITLGHSRI---AFISGTAIHDTAQRR 149
Query: 60 ---FLELVMRAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGK 101
+LE + A + +V D + +AL ++ G N+GK
Sbjct: 150 KEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGK 194
>pdb|2PBG|A Chain A, 6-Phospho-Beta-D-Galactosidase Form-B
Length = 468
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 50 AGDFYHQYPKFLEL 63
A DFYH+YP LEL
Sbjct: 49 ASDFYHKYPVDLEL 62
>pdb|1PBG|A Chain A, The Three-Dimensional Structure Of 6-Phospho-Beta
Galactosidase From Lactococcus Lactis
pdb|1PBG|B Chain B, The Three-Dimensional Structure Of 6-Phospho-Beta
Galactosidase From Lactococcus Lactis
pdb|3PBG|A Chain A, 6-Phospho-Beta-Galactosidase Form-C
pdb|3PBG|B Chain B, 6-Phospho-Beta-Galactosidase Form-C
Length = 468
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 50 AGDFYHQYPKFLEL 63
A DFYH+YP LEL
Sbjct: 49 ASDFYHKYPVDLEL 62
>pdb|4PBG|A Chain A, 6-Phospho-Beta-Galactosidase Form-Cst
pdb|4PBG|B Chain B, 6-Phospho-Beta-Galactosidase Form-Cst
Length = 468
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 50 AGDFYHQYPKFLEL 63
A DFYH+YP LEL
Sbjct: 49 ASDFYHKYPVDLEL 62
>pdb|2FJK|A Chain A, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
pdb|2FJK|B Chain B, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
pdb|2FJK|C Chain C, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
pdb|2FJK|D Chain D, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
Length = 305
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 41 KRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVG 100
++ R EG+ G F +F + ++ A +E K + ++EG K + G+ +
Sbjct: 10 RKARAEGYGVGAFNTNNXEFTQAILEAAEEXKSPVILALSEGAXK--------YGGRALT 61
Query: 101 KQLVVIARE 109
+ +V +A+E
Sbjct: 62 RXVVALAQE 70
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 24/88 (27%)
Query: 28 KSEGVHNLMQVVGKRIRMEGF------LAGDFY----HQYPKFLELVMRAIKEGKLVYVE 77
+SEG L V GK +R+ F L G + ++P LEL +E L YVE
Sbjct: 226 RSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVE 285
Query: 78 DI---------AEGLEKAPSALVGIFTG 96
AEG EK G+F G
Sbjct: 286 AAKRKTEIERQAEGREK-----TGVFLG 308
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 24/88 (27%)
Query: 28 KSEGVHNLMQVVGKRIRMEGF------LAGDFY----HQYPKFLELVMRAIKEGKLVYVE 77
+SEG L V GK +R+ F L G + ++P LEL +E L YVE
Sbjct: 226 RSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVE 285
Query: 78 DI---------AEGLEKAPSALVGIFTG 96
AEG EK G+F G
Sbjct: 286 AAKRKTEIERQAEGREK-----TGVFLG 308
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,916,853
Number of Sequences: 62578
Number of extensions: 108011
Number of successful extensions: 385
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 358
Number of HSP's gapped (non-prelim): 22
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)