Query 033914
Match_columns 109
No_of_seqs 157 out of 1156
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 07:43:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2130 Putative NADP-dependen 99.9 3.7E-22 8E-27 135.4 9.8 108 1-108 231-340 (340)
2 KOG1196 Predicted NAD-dependen 99.9 3E-21 6.4E-26 130.7 8.0 109 1-109 235-343 (343)
3 PLN03154 putative allyl alcoho 99.8 9.3E-18 2E-22 117.6 10.4 108 2-109 241-348 (348)
4 COG1064 AdhP Zn-dependent alco 99.7 4.6E-16 9.9E-21 108.1 10.3 97 2-107 242-338 (339)
5 KOG1197 Predicted quinone oxid 99.7 5.3E-16 1.2E-20 103.7 7.6 103 2-109 228-333 (336)
6 PRK10309 galactitol-1-phosphat 99.6 2.2E-14 4.9E-19 100.1 9.5 103 2-107 243-347 (347)
7 PLN02178 cinnamyl-alcohol dehy 99.6 4E-14 8.8E-19 100.3 10.1 94 2-107 256-349 (375)
8 PLN02514 cinnamyl-alcohol dehy 99.6 4.6E-14 1E-18 99.2 10.3 95 2-108 258-352 (357)
9 KOG0023 Alcohol dehydrogenase, 99.5 6.7E-14 1.4E-18 96.1 9.2 95 2-108 262-356 (360)
10 PLN02586 probable cinnamyl alc 99.5 8.4E-14 1.8E-18 98.1 9.8 94 2-107 261-354 (360)
11 TIGR02822 adh_fam_2 zinc-bindi 99.5 1.2E-13 2.6E-18 96.2 10.4 92 2-104 237-328 (329)
12 PF13602 ADH_zinc_N_2: Zinc-bi 99.5 1.4E-14 3E-19 88.1 4.6 90 3-104 36-127 (127)
13 cd08295 double_bond_reductase_ 99.5 2.3E-13 4.9E-18 94.8 10.8 105 2-106 234-338 (338)
14 cd08291 ETR_like_1 2-enoyl thi 99.5 1.7E-13 3.7E-18 94.8 9.0 98 3-105 226-324 (324)
15 PRK09880 L-idonate 5-dehydroge 99.5 2.3E-13 5E-18 95.1 9.2 93 2-106 249-343 (343)
16 TIGR01202 bchC 2-desacetyl-2-h 99.5 1.6E-13 3.5E-18 94.7 8.1 93 2-105 214-308 (308)
17 COG0604 Qor NADPH:quinone redu 99.5 5.2E-13 1.1E-17 93.2 9.7 100 2-106 224-326 (326)
18 cd08281 liver_ADH_like1 Zinc-d 99.5 4.8E-13 1E-17 94.4 9.3 97 2-104 273-371 (371)
19 cd08294 leukotriene_B4_DH_like 99.5 6.3E-13 1.4E-17 91.7 9.7 105 2-106 224-329 (329)
20 TIGR03201 dearomat_had 6-hydro 99.4 1.1E-12 2.5E-17 91.8 9.7 94 2-106 255-349 (349)
21 TIGR02825 B4_12hDH leukotriene 99.4 1.3E-12 2.8E-17 90.5 9.7 104 2-105 220-325 (325)
22 PLN02827 Alcohol dehydrogenase 99.4 1.5E-12 3.3E-17 92.2 9.9 97 2-107 277-377 (378)
23 cd08238 sorbose_phosphate_red 99.4 4.5E-12 9.6E-17 90.7 9.9 97 2-107 271-369 (410)
24 cd08237 ribitol-5-phosphate_DH 99.4 3.3E-12 7.2E-17 89.3 8.6 94 2-107 239-340 (341)
25 cd08239 THR_DH_like L-threonin 99.3 1.2E-11 2.7E-16 86.0 10.2 90 3-105 246-338 (339)
26 TIGR03451 mycoS_dep_FDH mycoth 99.3 1.1E-11 2.5E-16 87.0 9.9 97 2-105 259-357 (358)
27 cd08293 PTGR2 Prostaglandin re 99.3 2.6E-11 5.6E-16 84.4 10.7 105 2-106 237-345 (345)
28 cd08233 butanediol_DH_like (2R 99.3 2.8E-11 6.1E-16 84.6 8.8 92 2-104 255-350 (351)
29 cd08230 glucose_DH Glucose deh 99.3 2.9E-11 6.3E-16 84.8 8.0 93 2-105 252-354 (355)
30 cd08296 CAD_like Cinnamyl alco 99.2 1.2E-10 2.6E-15 81.0 9.3 92 2-105 242-333 (333)
31 KOG0024 Sorbitol dehydrogenase 99.2 1.1E-10 2.3E-15 80.6 8.7 96 2-108 256-354 (354)
32 PLN02740 Alcohol dehydrogenase 99.2 1.9E-10 4.1E-15 81.6 9.8 97 2-106 282-381 (381)
33 cd08270 MDR4 Medium chain dehy 99.2 2.8E-10 6.1E-15 77.7 10.3 99 2-106 205-305 (305)
34 cd08301 alcohol_DH_plants Plan 99.2 2.1E-10 4.6E-15 80.8 9.8 95 2-104 271-368 (369)
35 COG1063 Tdh Threonine dehydrog 99.2 9.2E-11 2E-15 82.6 7.5 96 2-106 252-350 (350)
36 cd05283 CAD1 Cinnamyl alcohol 99.2 3.1E-10 6.6E-15 79.0 9.3 92 2-105 246-337 (337)
37 cd08277 liver_alcohol_DH_like 99.2 3.2E-10 7E-15 79.9 9.3 95 2-105 268-365 (365)
38 COG1062 AdhC Zn-dependent alco 99.1 1.1E-10 2.3E-15 81.1 6.1 96 2-105 268-365 (366)
39 cd08300 alcohol_DH_class_III c 99.1 4.8E-10 1E-14 79.1 9.3 96 2-105 270-368 (368)
40 cd08274 MDR9 Medium chain dehy 99.1 6.3E-10 1.4E-14 77.5 9.8 95 2-106 256-350 (350)
41 cd05288 PGDH Prostaglandin deh 99.1 4.4E-10 9.5E-15 77.6 8.7 103 2-104 227-329 (329)
42 cd08292 ETR_like_2 2-enoyl thi 99.1 6.3E-10 1.4E-14 76.6 8.7 99 2-105 221-324 (324)
43 cd08246 crotonyl_coA_red croto 99.1 1.1E-09 2.5E-14 77.7 10.2 95 2-106 298-393 (393)
44 TIGR02819 fdhA_non_GSH formald 99.1 4.9E-10 1.1E-14 80.0 8.1 100 2-107 282-391 (393)
45 cd08231 MDR_TM0436_like Hypoth 99.1 8.2E-10 1.8E-14 77.5 8.6 95 2-106 263-361 (361)
46 PRK13771 putative alcohol dehy 99.1 2.5E-09 5.4E-14 74.1 10.4 96 2-106 238-333 (334)
47 cd08240 6_hydroxyhexanoate_dh_ 99.0 2.3E-09 4.9E-14 74.9 9.5 93 2-105 257-349 (350)
48 TIGR02823 oxido_YhdH putative 99.0 3.3E-09 7E-14 73.2 10.1 99 2-106 224-323 (323)
49 PRK09422 ethanol-active dehydr 99.0 2.7E-09 5.8E-14 74.1 9.6 94 2-107 244-337 (338)
50 TIGR01751 crot-CoA-red crotony 99.0 3.7E-09 8E-14 75.4 10.1 96 2-107 293-388 (398)
51 TIGR02818 adh_III_F_hyde S-(hy 99.0 3.6E-09 7.9E-14 74.8 9.8 96 2-105 269-367 (368)
52 KOG1202 Animal-type fatty acid 99.0 2.3E-09 4.9E-14 84.1 9.0 102 2-108 1638-1743(2376)
53 cd08244 MDR_enoyl_red Possible 99.0 4.6E-09 9.9E-14 72.2 9.7 99 3-106 225-324 (324)
54 KOG0025 Zn2+-binding dehydroge 99.0 2.3E-09 5E-14 73.3 7.9 98 4-106 248-352 (354)
55 PRK10083 putative oxidoreducta 99.0 5E-09 1.1E-13 72.8 9.7 95 2-108 242-339 (339)
56 cd05280 MDR_yhdh_yhfp Yhdh and 99.0 4.5E-09 9.8E-14 72.3 9.4 99 2-106 226-325 (325)
57 cd08254 hydroxyacyl_CoA_DH 6-h 99.0 5.8E-09 1.3E-13 72.1 9.6 93 2-106 246-338 (338)
58 cd08297 CAD3 Cinnamyl alcohol 99.0 8.2E-09 1.8E-13 71.8 10.2 94 2-106 248-341 (341)
59 cd08289 MDR_yhfp_like Yhfp put 99.0 5.3E-09 1.1E-13 72.1 8.7 100 2-106 226-326 (326)
60 cd05284 arabinose_DH_like D-ar 99.0 7.4E-09 1.6E-13 71.9 9.5 92 2-106 249-340 (340)
61 cd08266 Zn_ADH_like1 Alcohol d 99.0 1.2E-08 2.6E-13 70.3 10.3 95 2-106 248-342 (342)
62 cd08276 MDR7 Medium chain dehy 98.9 1.2E-08 2.7E-13 70.2 9.9 95 2-106 242-336 (336)
63 cd08283 FDH_like_1 Glutathione 98.9 9.4E-09 2E-13 73.1 9.2 95 2-106 289-386 (386)
64 cd08285 NADP_ADH NADP(H)-depen 98.9 7.6E-09 1.7E-13 72.4 8.6 97 2-106 249-351 (351)
65 cd08236 sugar_DH NAD(P)-depend 98.9 1.1E-08 2.5E-13 71.1 9.4 100 2-104 241-343 (343)
66 PTZ00354 alcohol dehydrogenase 98.9 1.7E-08 3.7E-13 69.6 10.0 103 2-108 223-330 (334)
67 cd05282 ETR_like 2-enoyl thioe 98.9 1.2E-08 2.5E-13 70.2 9.1 98 3-105 221-323 (323)
68 cd08242 MDR_like Medium chain 98.9 1E-08 2.2E-13 70.7 8.5 90 2-106 228-319 (319)
69 cd08263 Zn_ADH10 Alcohol dehyd 98.9 1.5E-08 3.3E-13 71.4 9.4 96 2-105 270-367 (367)
70 cd08290 ETR 2-enoyl thioester 98.9 1.4E-08 3E-13 70.6 9.0 99 3-106 235-341 (341)
71 PLN02702 L-idonate 5-dehydroge 98.9 2.1E-08 4.5E-13 70.6 9.5 92 2-105 268-363 (364)
72 cd05286 QOR2 Quinone oxidoredu 98.9 2.8E-08 6E-13 67.6 9.4 100 2-106 218-320 (320)
73 PRK05396 tdh L-threonine 3-deh 98.9 2.4E-08 5.2E-13 69.6 8.9 94 2-106 246-340 (341)
74 cd08232 idonate-5-DH L-idonate 98.9 4E-08 8.7E-13 68.3 10.0 92 2-105 245-338 (339)
75 cd08259 Zn_ADH5 Alcohol dehydr 98.8 4E-08 8.6E-13 67.7 9.7 93 3-105 240-332 (332)
76 cd08243 quinone_oxidoreductase 98.8 5.6E-08 1.2E-12 66.5 9.4 97 2-104 221-319 (320)
77 cd08262 Zn_ADH8 Alcohol dehydr 98.8 4.1E-08 8.9E-13 68.3 8.9 93 2-105 247-341 (341)
78 cd08260 Zn_ADH6 Alcohol dehydr 98.8 5.4E-08 1.2E-12 67.8 9.3 96 2-105 247-344 (345)
79 cd08282 PFDH_like Pseudomonas 98.8 4.7E-08 1E-12 69.2 9.0 99 2-106 268-375 (375)
80 cd08252 AL_MDR Arginate lyase 98.8 7.1E-08 1.5E-12 66.8 9.6 96 2-105 231-336 (336)
81 PRK10754 quinone oxidoreductas 98.8 5.4E-08 1.2E-12 67.3 9.0 98 2-106 222-327 (327)
82 cd08278 benzyl_alcohol_DH Benz 98.8 4.9E-08 1.1E-12 68.9 8.9 97 2-105 268-365 (365)
83 cd08250 Mgc45594_like Mgc45594 98.8 6.1E-08 1.3E-12 67.0 9.0 103 2-105 220-329 (329)
84 cd08235 iditol_2_DH_like L-idi 98.8 6.3E-08 1.4E-12 67.3 9.1 94 2-105 248-343 (343)
85 cd08284 FDH_like_2 Glutathione 98.8 6E-08 1.3E-12 67.5 8.9 94 2-106 249-344 (344)
86 cd08256 Zn_ADH2 Alcohol dehydr 98.8 4.8E-08 1E-12 68.3 8.3 91 2-104 257-350 (350)
87 cd08269 Zn_ADH9 Alcohol dehydr 98.8 9.4E-08 2E-12 65.4 9.5 97 2-104 212-311 (312)
88 cd08288 MDR_yhdh Yhdh putative 98.8 1E-07 2.2E-12 65.7 9.7 98 3-106 226-324 (324)
89 cd08241 QOR1 Quinone oxidoredu 98.8 9.9E-08 2.1E-12 65.0 9.5 99 2-105 221-323 (323)
90 TIGR00692 tdh L-threonine 3-de 98.8 8.6E-08 1.9E-12 66.8 8.9 93 2-105 244-339 (340)
91 cd08275 MDR3 Medium chain dehy 98.7 1.7E-07 3.6E-12 64.6 10.1 105 2-106 219-337 (337)
92 cd08298 CAD2 Cinnamyl alcohol 98.7 1.1E-07 2.4E-12 65.8 9.0 91 2-104 239-329 (329)
93 cd05276 p53_inducible_oxidored 98.7 1.1E-07 2.4E-12 64.7 8.9 97 3-104 222-323 (323)
94 TIGR02824 quinone_pig3 putativ 98.7 1.6E-07 3.5E-12 64.1 9.4 100 2-106 221-325 (325)
95 cd05281 TDH Threonine dehydrog 98.7 1E-07 2.2E-12 66.4 8.6 94 2-106 245-341 (341)
96 cd08287 FDH_like_ADH3 formalde 98.7 1.4E-07 2.9E-12 65.8 9.1 93 2-106 251-345 (345)
97 cd05278 FDH_like Formaldehyde 98.7 1.3E-07 2.9E-12 65.7 8.8 95 2-106 250-347 (347)
98 cd08279 Zn_ADH_class_III Class 98.7 2.1E-07 4.6E-12 65.5 9.6 96 2-103 265-362 (363)
99 cd08286 FDH_like_ADH2 formalde 98.7 1.8E-07 3.9E-12 65.2 9.2 92 3-106 250-345 (345)
100 cd08261 Zn_ADH7 Alcohol dehydr 98.7 2.4E-07 5.1E-12 64.4 9.5 93 2-105 241-336 (337)
101 cd08234 threonine_DH_like L-th 98.7 2.5E-07 5.4E-12 64.1 9.6 92 2-104 240-333 (334)
102 cd08245 CAD Cinnamyl alcohol d 98.7 2.4E-07 5.2E-12 64.1 9.3 92 2-104 239-330 (330)
103 KOG0022 Alcohol dehydrogenase, 98.7 1.3E-07 2.8E-12 65.5 7.5 96 2-105 276-374 (375)
104 cd05285 sorbitol_DH Sorbitol d 98.7 2.5E-07 5.5E-12 64.6 9.1 91 2-104 248-341 (343)
105 cd08265 Zn_ADH3 Alcohol dehydr 98.7 2.7E-07 5.9E-12 65.6 9.1 92 2-104 290-383 (384)
106 cd08268 MDR2 Medium chain dehy 98.6 4E-07 8.7E-12 62.2 9.6 100 2-106 226-328 (328)
107 cd08264 Zn_ADH_like2 Alcohol d 98.6 2.4E-07 5.3E-12 63.9 8.3 90 2-103 236-325 (325)
108 TIGR02817 adh_fam_1 zinc-bindi 98.6 5.6E-07 1.2E-11 62.3 9.6 95 2-105 230-334 (336)
109 KOG1198 Zinc-binding oxidoredu 98.6 2.6E-07 5.6E-12 65.3 7.5 104 3-107 239-346 (347)
110 cd08253 zeta_crystallin Zeta-c 98.6 6.5E-07 1.4E-11 61.1 9.3 98 3-106 227-325 (325)
111 cd08273 MDR8 Medium chain dehy 98.6 5.9E-07 1.3E-11 62.0 8.8 101 2-104 216-330 (331)
112 cd05289 MDR_like_2 alcohol deh 98.6 8.9E-07 1.9E-11 60.1 9.3 89 2-104 221-309 (309)
113 cd05279 Zn_ADH1 Liver alcohol 98.6 8.5E-07 1.8E-11 62.6 9.2 95 2-104 267-364 (365)
114 cd08272 MDR6 Medium chain dehy 98.5 1.2E-06 2.5E-11 60.0 9.6 95 3-106 225-326 (326)
115 cd08255 2-desacetyl-2-hydroxye 98.5 5.2E-07 1.1E-11 61.0 7.6 97 2-104 173-277 (277)
116 cd08249 enoyl_reductase_like e 98.5 7.7E-07 1.7E-11 62.1 8.6 93 2-106 235-339 (339)
117 cd05195 enoyl_red enoyl reduct 98.5 6.5E-07 1.4E-11 60.0 7.2 98 2-104 192-293 (293)
118 cd08271 MDR5 Medium chain dehy 98.5 1.1E-06 2.4E-11 60.3 8.2 100 3-106 223-325 (325)
119 PF00107 ADH_zinc_N: Zinc-bind 98.5 3.6E-07 7.9E-12 55.4 5.0 59 2-70 72-130 (130)
120 TIGR03366 HpnZ_proposed putati 98.5 3.6E-07 7.7E-12 62.4 5.4 76 2-86 201-280 (280)
121 smart00829 PKS_ER Enoylreducta 98.4 1.7E-06 3.6E-11 58.0 8.0 98 2-104 188-288 (288)
122 cd08251 polyketide_synthase po 98.4 7.3E-07 1.6E-11 60.4 5.4 98 2-104 202-303 (303)
123 cd08248 RTN4I1 Human Reticulon 98.3 2.4E-06 5.1E-11 59.5 7.2 102 2-105 240-350 (350)
124 cd08247 AST1_like AST1 is a cy 98.3 6.7E-06 1.5E-10 57.5 7.8 48 59-106 305-352 (352)
125 cd08299 alcohol_DH_class_I_II_ 98.2 2.9E-05 6.4E-10 55.1 9.5 96 3-106 275-373 (373)
126 cd08267 MDR1 Medium chain dehy 98.1 3.5E-05 7.7E-10 52.7 9.0 91 8-104 229-319 (319)
127 cd00401 AdoHcyase S-adenosyl-L 98.0 2.2E-05 4.8E-10 56.7 5.7 93 2-106 271-376 (413)
128 cd08258 Zn_ADH4 Alcohol dehydr 97.9 5.8E-05 1.3E-09 52.1 6.9 60 2-71 247-306 (306)
129 PRK11873 arsM arsenite S-adeno 97.0 0.0045 9.6E-08 42.2 6.8 90 2-105 166-260 (272)
130 cd05188 MDR Medium chain reduc 95.6 0.057 1.2E-06 35.8 6.1 56 2-67 215-270 (271)
131 PRK09424 pntA NAD(P) transhydr 94.7 0.086 1.9E-06 39.5 5.2 71 2-80 268-339 (509)
132 COG0275 Predicted S-adenosylme 84.5 0.99 2.2E-05 31.8 2.5 22 2-23 227-248 (314)
133 cd08238 sorbose_phosphate_red 80.5 0.53 1.2E-05 34.0 0.0 46 60-107 348-396 (410)
134 TIGR00006 S-adenosyl-methyltra 80.3 1.8 3.9E-05 30.5 2.6 22 2-23 223-244 (305)
135 PRK00050 16S rRNA m(4)C1402 me 72.7 3.9 8.6E-05 28.7 2.6 22 2-23 219-240 (296)
136 PF13065 DUF3928: Protein of u 71.4 15 0.00033 20.4 4.2 34 57-93 57-90 (95)
137 PF06962 rRNA_methylase: Putat 69.9 2.7 5.9E-05 26.2 1.2 22 2-23 75-96 (140)
138 PF01795 Methyltransf_5: MraW 68.4 2.7 5.9E-05 29.7 1.1 22 2-23 224-245 (310)
139 COG2242 CobL Precorrin-6B meth 66.4 4.6 9.9E-05 26.5 1.8 20 1-20 117-136 (187)
140 PF07109 Mg-por_mtran_C: Magne 60.5 15 0.00033 21.5 3.0 29 78-107 5-33 (97)
141 PF04016 DUF364: Domain of unk 59.8 23 0.0005 22.1 4.0 55 2-72 78-132 (147)
142 PF06080 DUF938: Protein of un 58.2 8.7 0.00019 25.6 2.0 68 2-79 124-191 (204)
143 TIGR02716 C20_methyl_CrtF C-20 53.1 11 0.00024 26.1 1.9 19 2-20 237-255 (306)
144 KOG1575 Voltage-gated shaker-l 52.9 61 0.0013 23.4 5.6 39 56-94 142-180 (336)
145 PF02571 CbiJ: Precorrin-6x re 52.3 13 0.00029 25.3 2.2 26 61-86 55-80 (249)
146 cd05007 SIS_Etherase N-acetylm 51.2 17 0.00037 24.9 2.6 19 2-20 39-57 (257)
147 TIGR00438 rrmJ cell division p 49.5 18 0.00039 23.1 2.4 18 2-19 129-146 (188)
148 TIGR00537 hemK_rel_arch HemK-r 48.9 18 0.00039 22.9 2.3 19 2-20 123-141 (179)
149 PRK08057 cobalt-precorrin-6x r 48.7 16 0.00035 24.9 2.2 27 61-87 54-80 (248)
150 PRK14967 putative methyltransf 48.3 15 0.00032 24.3 1.9 17 2-18 142-158 (223)
151 PF01209 Ubie_methyltran: ubiE 48.0 11 0.00023 25.4 1.2 19 2-20 136-154 (233)
152 PF01234 NNMT_PNMT_TEMT: NNMT/ 47.9 8.2 0.00018 26.6 0.6 20 3-22 183-202 (256)
153 COG2524 Predicted transcriptio 47.8 87 0.0019 22.0 5.5 45 61-106 220-272 (294)
154 TIGR00446 nop2p NOL1/NOP2/sun 47.5 16 0.00035 24.9 2.0 17 2-18 182-198 (264)
155 PF13580 SIS_2: SIS domain; PD 47.0 18 0.0004 22.0 2.1 18 3-20 26-43 (138)
156 PRK13938 phosphoheptose isomer 46.4 19 0.00041 23.7 2.1 19 3-21 36-54 (196)
157 PLN02232 ubiquinone biosynthes 46.4 21 0.00045 22.3 2.3 19 2-20 64-82 (160)
158 PRK00377 cbiT cobalt-precorrin 45.9 18 0.00039 23.4 2.0 17 2-18 128-144 (198)
159 PRK12570 N-acetylmuramic acid- 45.4 24 0.00051 24.8 2.6 18 3-20 49-66 (296)
160 PRK11933 yebU rRNA (cytosine-C 45.0 16 0.00035 27.4 1.8 21 1-22 224-244 (470)
161 TIGR00274 N-acetylmuramic acid 45.0 24 0.00053 24.6 2.6 18 3-20 48-65 (291)
162 PRK00107 gidB 16S rRNA methylt 44.1 23 0.0005 23.0 2.3 17 2-18 128-144 (187)
163 PF02570 CbiC: Precorrin-8X me 43.1 45 0.00097 22.1 3.5 39 58-96 129-169 (198)
164 PRK00517 prmA ribosomal protei 43.1 24 0.00053 23.7 2.4 21 2-22 196-216 (250)
165 COG2099 CobK Precorrin-6x redu 42.9 56 0.0012 22.6 4.0 24 61-84 55-78 (257)
166 COG0144 Sun tRNA and rRNA cyto 41.0 20 0.00044 25.7 1.8 17 1-17 270-286 (355)
167 PRK14901 16S rRNA methyltransf 40.5 22 0.00048 26.2 2.0 17 2-18 367-383 (434)
168 COG2082 CobH Precorrin isomera 39.8 74 0.0016 21.4 4.1 40 58-97 138-179 (210)
169 PLN02233 ubiquinone biosynthes 39.7 30 0.00064 23.6 2.4 19 2-20 165-183 (261)
170 KOG2198 tRNA cytosine-5-methyl 39.6 21 0.00044 26.1 1.6 20 2-22 279-298 (375)
171 PRK09489 rsmC 16S ribosomal RN 39.5 28 0.00061 24.9 2.3 20 2-21 95-114 (342)
172 PRK11188 rrmJ 23S rRNA methylt 39.4 29 0.00063 22.8 2.2 17 2-18 148-164 (209)
173 TIGR01934 MenG_MenH_UbiE ubiqu 39.0 31 0.00067 22.2 2.3 20 2-21 126-145 (223)
174 PRK05441 murQ N-acetylmuramic 38.8 35 0.00075 24.0 2.6 19 2-20 52-70 (299)
175 PRK07402 precorrin-6B methylas 38.6 32 0.00068 22.1 2.3 18 2-19 125-142 (196)
176 PF08468 MTS_N: Methyltransfer 38.6 23 0.0005 22.4 1.6 19 2-20 88-106 (155)
177 TIGR00563 rsmB ribosomal RNA s 38.3 25 0.00055 25.8 2.0 17 2-18 351-367 (426)
178 COG2103 Predicted sugar phosph 38.2 36 0.00078 23.9 2.5 19 2-20 50-68 (298)
179 PF07655 Secretin_N_2: Secreti 37.8 45 0.00099 19.2 2.6 27 81-107 70-96 (98)
180 COG2813 RsmC 16S RNA G1207 met 37.6 32 0.00069 24.4 2.3 19 2-20 56-74 (300)
181 TIGR00406 prmA ribosomal prote 37.2 36 0.00077 23.6 2.5 21 2-22 242-262 (288)
182 PF05175 MTS: Methyltransferas 37.2 20 0.00043 22.6 1.2 19 2-20 123-141 (170)
183 KOG1540 Ubiquinone biosynthesi 36.9 35 0.00076 23.9 2.3 19 2-20 197-215 (296)
184 PTZ00098 phosphoethanolamine N 36.7 36 0.00077 23.2 2.4 19 2-20 139-157 (263)
185 PF14237 DUF4339: Domain of un 36.5 36 0.00078 16.4 1.8 26 60-85 15-41 (45)
186 KOG1774 Small nuclear ribonucl 36.4 18 0.00038 20.4 0.7 24 82-105 53-76 (88)
187 COG2226 UbiE Methylase involve 36.2 35 0.00077 23.2 2.3 21 2-22 139-159 (238)
188 PRK14968 putative methyltransf 35.9 36 0.00078 21.3 2.2 17 2-18 131-147 (188)
189 PRK04266 fibrillarin; Provisio 35.3 36 0.00077 22.8 2.2 17 2-18 159-175 (226)
190 PF11288 DUF3089: Protein of u 34.8 39 0.00086 22.5 2.3 27 81-107 75-101 (207)
191 PRK05954 precorrin-8X methylmu 34.8 1E+02 0.0022 20.6 4.1 38 58-95 131-170 (203)
192 TIGR02752 MenG_heptapren 2-hep 34.7 37 0.00081 22.2 2.2 18 2-19 134-151 (231)
193 PRK11036 putative S-adenosyl-L 34.2 39 0.00084 22.7 2.2 18 2-19 132-149 (255)
194 PRK08286 cbiC cobalt-precorrin 34.2 95 0.0021 20.9 4.0 38 58-95 142-181 (214)
195 PF14805 THDPS_N_2: Tetrahydro 34.0 47 0.001 18.1 2.1 23 56-78 25-47 (70)
196 PLN02244 tocopherol O-methyltr 33.8 40 0.00086 24.0 2.3 19 2-20 206-224 (340)
197 PRK14902 16S rRNA methyltransf 33.6 34 0.00074 25.2 2.0 17 2-18 362-378 (444)
198 TIGR03840 TMPT_Se_Te thiopurin 33.5 43 0.00093 22.2 2.3 20 2-21 135-154 (213)
199 KOG4300 Predicted methyltransf 33.4 37 0.00079 23.1 1.9 22 2-23 165-186 (252)
200 TIGR00138 gidB 16S rRNA methyl 32.8 46 0.001 21.3 2.3 17 2-18 125-141 (181)
201 PRK08285 cobH precorrin-8X met 32.4 1E+02 0.0023 20.6 4.0 38 58-95 137-176 (208)
202 PRK08317 hypothetical protein; 31.1 52 0.0011 21.3 2.4 18 2-19 107-124 (241)
203 PRK10901 16S rRNA methyltransf 31.0 39 0.00085 24.8 2.0 16 2-17 355-370 (427)
204 PRK08287 cobalt-precorrin-6Y C 30.2 51 0.0011 20.9 2.2 18 2-19 114-131 (187)
205 PF02142 MGS: MGS-like domain 30.0 1.1E+02 0.0024 17.2 3.8 25 63-87 51-75 (95)
206 PRK05575 cbiC precorrin-8X met 29.9 1.2E+02 0.0026 20.2 3.9 38 58-95 136-175 (204)
207 PF05172 Nup35_RRM: Nup53/35/4 29.8 54 0.0012 19.2 2.1 14 3-16 65-78 (100)
208 PLN02490 MPBQ/MSBQ methyltrans 29.6 51 0.0011 23.7 2.3 19 2-20 198-216 (340)
209 PRK15001 SAM-dependent 23S rib 29.6 43 0.00093 24.5 1.9 19 2-20 323-341 (378)
210 PRK13942 protein-L-isoaspartat 29.5 54 0.0012 21.5 2.3 16 3-18 160-175 (212)
211 smart00828 PKS_MT Methyltransf 29.5 57 0.0012 21.2 2.4 19 2-20 87-105 (224)
212 PRK06264 cbiC precorrin-8X met 29.4 1.3E+02 0.0027 20.3 3.9 38 58-95 137-176 (210)
213 PF06859 Bin3: Bicoid-interact 29.4 31 0.00067 20.7 1.0 17 2-18 27-43 (110)
214 PRK15451 tRNA cmo(5)U34 methyl 29.1 47 0.001 22.3 2.0 21 2-22 147-167 (247)
215 PRK14903 16S rRNA methyltransf 29.1 45 0.00098 24.6 2.0 17 2-18 349-365 (431)
216 PF05401 NodS: Nodulation prot 28.8 32 0.0007 22.9 1.1 18 2-19 129-146 (201)
217 PF08541 ACP_syn_III_C: 3-Oxoa 28.7 50 0.0011 18.2 1.8 23 2-24 57-81 (90)
218 PF00891 Methyltransf_2: O-met 28.7 34 0.00074 22.7 1.2 22 2-23 180-203 (241)
219 COG0279 GmhA Phosphoheptose is 28.4 69 0.0015 20.9 2.5 19 4-22 33-51 (176)
220 PRK13937 phosphoheptose isomer 28.4 67 0.0015 20.7 2.6 19 2-20 28-46 (188)
221 TIGR00477 tehB tellurite resis 28.2 66 0.0014 20.7 2.5 18 2-19 116-133 (195)
222 PRK11557 putative DNA-binding 28.2 2E+02 0.0042 19.6 7.5 91 2-105 118-208 (278)
223 PLN02781 Probable caffeoyl-CoA 28.1 51 0.0011 22.1 2.0 19 2-20 161-179 (234)
224 COG4231 Indolepyruvate ferredo 27.8 3.1E+02 0.0068 21.8 6.2 73 35-108 45-118 (640)
225 COG0809 QueA S-adenosylmethion 27.8 64 0.0014 23.3 2.5 18 5-22 241-259 (348)
226 PRK14904 16S rRNA methyltransf 27.4 49 0.0011 24.4 2.0 18 2-19 360-377 (445)
227 PRK05953 precorrin-8X methylmu 27.4 1.4E+02 0.003 20.0 3.9 38 58-95 129-168 (208)
228 PRK00121 trmB tRNA (guanine-N( 27.0 68 0.0015 20.8 2.4 18 2-19 139-156 (202)
229 COG2519 GCD14 tRNA(1-methylade 27.0 57 0.0012 22.6 2.0 19 2-20 178-196 (256)
230 PF13489 Methyltransf_23: Meth 27.0 34 0.00073 20.6 0.9 19 2-20 98-116 (161)
231 PRK08261 fabG 3-ketoacyl-(acyl 26.9 65 0.0014 23.5 2.5 22 2-23 106-127 (450)
232 PF05853 DUF849: Prokaryotic p 26.8 2.2E+02 0.0048 19.7 6.2 48 58-106 125-172 (272)
233 TIGR00452 methyltransferase, p 26.6 48 0.0011 23.5 1.7 18 2-19 208-225 (314)
234 KOG3883 Ras family small GTPas 26.3 47 0.001 21.5 1.5 15 8-22 5-19 (198)
235 KOG1144 Translation initiation 26.3 83 0.0018 25.7 3.0 36 8-50 725-764 (1064)
236 TIGR00080 pimt protein-L-isoas 26.0 60 0.0013 21.2 2.0 16 3-18 161-176 (215)
237 PRK00216 ubiE ubiquinone/menaq 25.8 69 0.0015 20.8 2.3 19 2-20 141-159 (239)
238 PF12324 HTH_15: Helix-turn-he 25.7 69 0.0015 17.9 1.9 47 57-103 22-74 (77)
239 PLN02476 O-methyltransferase 25.6 62 0.0013 22.6 2.1 19 2-20 211-229 (278)
240 PF01650 Peptidase_C13: Peptid 25.6 95 0.0021 21.3 3.0 27 83-109 132-158 (256)
241 PRK14103 trans-aconitate 2-met 25.2 70 0.0015 21.5 2.3 17 2-18 109-125 (255)
242 TIGR00740 methyltransferase, p 25.0 70 0.0015 21.2 2.2 19 2-20 144-162 (239)
243 PRK01683 trans-aconitate 2-met 24.7 72 0.0016 21.3 2.3 18 2-19 113-130 (258)
244 PF01728 FtsJ: FtsJ-like methy 24.2 67 0.0014 20.2 1.9 17 2-18 122-138 (181)
245 TIGR00091 tRNA (guanine-N(7)-) 24.1 87 0.0019 20.1 2.5 17 2-18 115-131 (194)
246 TIGR00441 gmhA phosphoheptose 23.9 86 0.0019 19.4 2.4 19 3-21 2-20 (154)
247 PF04019 DUF359: Protein of un 23.7 60 0.0013 19.7 1.6 16 8-23 81-96 (121)
248 COG1092 Predicted SAM-dependen 23.6 67 0.0015 23.7 2.0 22 2-23 319-340 (393)
249 PF12916 DUF3834: Protein of u 23.6 57 0.0012 21.7 1.5 35 59-95 101-135 (201)
250 PF09857 DUF2084: Uncharacteri 23.5 1.1E+02 0.0023 17.5 2.4 19 4-22 9-27 (85)
251 COG1803 MgsA Methylglyoxal syn 23.4 76 0.0017 19.7 1.9 26 62-87 65-90 (142)
252 PRK11207 tellurite resistance 23.3 87 0.0019 20.2 2.4 19 2-20 117-135 (197)
253 PRK13936 phosphoheptose isomer 23.2 96 0.0021 20.2 2.6 18 3-20 34-51 (197)
254 PRK13944 protein-L-isoaspartat 23.1 73 0.0016 20.7 2.0 16 3-18 157-172 (205)
255 PRK12428 3-alpha-hydroxysteroi 23.1 64 0.0014 21.3 1.8 22 3-24 80-101 (241)
256 PRK04457 spermidine synthase; 23.0 78 0.0017 21.6 2.2 16 2-17 160-175 (262)
257 PRK11172 dkgB 2,5-diketo-D-glu 22.8 1.8E+02 0.004 19.7 4.0 35 58-92 108-142 (267)
258 cd04924 ACT_AK-Arch_2 ACT doma 22.8 1.2E+02 0.0025 15.1 4.0 37 58-94 15-61 (66)
259 TIGR02608 delta_60_rpt delta-6 22.3 49 0.0011 17.1 0.9 14 9-22 8-21 (55)
260 PF11195 DUF2829: Protein of u 22.1 80 0.0017 17.3 1.7 18 2-19 3-20 (75)
261 COG0656 ARA1 Aldo/keto reducta 21.9 2.1E+02 0.0045 20.1 4.1 34 59-92 121-154 (280)
262 PRK15068 tRNA mo(5)U34 methylt 21.9 67 0.0014 22.7 1.7 18 2-19 209-226 (322)
263 PRK15128 23S rRNA m(5)C1962 me 21.7 72 0.0016 23.4 1.9 18 3-20 323-340 (396)
264 PRK11565 dkgA 2,5-diketo-D-glu 21.5 2.2E+02 0.0048 19.4 4.2 34 57-90 116-149 (275)
265 PF08704 GCD14: tRNA methyltra 21.4 51 0.0011 22.6 1.0 18 2-19 128-146 (247)
266 PF12471 GTP_CH_N: GTP cyclohy 21.4 1.7E+02 0.0036 19.4 3.3 39 67-105 114-155 (194)
267 PRK12747 short chain dehydroge 21.3 89 0.0019 20.5 2.2 22 3-24 128-149 (252)
268 TIGR03704 PrmC_rel_meth putati 21.0 83 0.0018 21.3 2.0 18 2-19 199-216 (251)
269 PF03537 Glyco_hydro_114: Glyc 21.0 98 0.0021 16.8 1.9 20 4-23 40-59 (74)
270 COG4122 Predicted O-methyltran 21.0 97 0.0021 20.9 2.3 21 2-22 149-169 (219)
271 PRK10886 DnaA initiator-associ 20.8 1.1E+02 0.0025 20.0 2.5 17 4-20 33-49 (196)
272 COG1010 CobJ Precorrin-3B meth 20.6 3E+02 0.0065 19.0 5.3 12 12-23 2-13 (249)
273 COG2518 Pcm Protein-L-isoaspar 20.6 91 0.002 20.9 2.0 17 3-19 153-170 (209)
274 cd04821 PA_M28_1_2 PA_M28_1_2: 20.6 57 0.0012 20.7 1.1 26 81-106 31-56 (157)
275 PF02677 DUF208: Uncharacteriz 20.6 2.6E+02 0.0056 18.3 5.4 61 35-96 15-78 (176)
276 COG0667 Tas Predicted oxidored 20.4 2.2E+02 0.0048 20.1 4.1 36 58-93 135-170 (316)
277 PRK09744 DNA-binding transcrip 20.3 1.4E+02 0.0031 16.6 2.4 24 53-76 30-53 (75)
278 TIGR01177 conserved hypothetic 20.3 1E+02 0.0022 21.7 2.4 18 2-19 277-294 (329)
279 COG4123 Predicted O-methyltran 20.2 1.1E+02 0.0024 21.1 2.4 18 2-19 153-170 (248)
280 PRK05786 fabG 3-ketoacyl-(acyl 20.1 1.2E+02 0.0025 19.7 2.5 21 3-23 119-139 (238)
No 1
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.88 E-value=3.7e-22 Score=135.37 Aligned_cols=108 Identities=41% Similarity=0.725 Sum_probs=95.6
Q ss_pred CHHHHHHhhccCCeEEEEccccccCCCC-CccccchHHHhhcceeeeeeee-cccccchHHHHHHHHHHHHcCceeeeee
Q 033914 1 MLDAVRLNMRIRGRIAVCGMISQYNLEK-SEGVHNLMQVVGKRIRMEGFLA-GDFYHQYPKFLELVMRAIKEGKLVYVED 78 (109)
Q Consensus 1 ~~~~~l~~l~~~Griv~~G~~~~~~~~~-~~~~~~~~~~~~k~~~~~G~~~-~~~~~~~~~~~~~~~~~~~~G~l~~~~~ 78 (109)
++++++..|+..|||++||.+|+||.+. +..+..+..++.|+++++||.+ .+|.+..+++.+++..|+++|+|++.++
T Consensus 231 v~DAv~~~ln~~aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~wv~~GKi~~~et 310 (340)
T COG2130 231 VLDAVLPLLNLFARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRET 310 (340)
T ss_pred HHHHHHHhhccccceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEechhhhhhhHHHHHHHHHHHHcCceeeEee
Confidence 4789999999999999999999998653 3455667789999999999999 4444445599999999999999999999
Q ss_pred eecccchHHHHHHHhhcCCCcceEEEEeec
Q 033914 79 IAEGLEKAPSALVGIFTGQNVGKQLVVIAR 108 (109)
Q Consensus 79 ~~~~l~~~~~A~~~l~~g~~~GKvvv~~~~ 108 (109)
++.+||.+|+||..|.+|+++||+|+++.+
T Consensus 311 i~dGlEnaP~Af~gLl~G~N~GK~vvKv~~ 340 (340)
T COG2130 311 IVDGLENAPEAFIGLLSGKNFGKLVVKVAD 340 (340)
T ss_pred ehhhhhccHHHHHHHhcCCccceEEEEecC
Confidence 999999999999999999999999999864
No 2
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=99.85 E-value=3e-21 Score=130.75 Aligned_cols=109 Identities=67% Similarity=1.126 Sum_probs=101.1
Q ss_pred CHHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeee
Q 033914 1 MLDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIA 80 (109)
Q Consensus 1 ~~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~ 80 (109)
++++++..|+..|||++||++|+||.+.+....++..++.|+++++||.+.++.+.+++.++.+..|+++|+|++.+++.
T Consensus 235 ~lDavl~nM~~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l~~~ikegKI~y~edi~ 314 (343)
T KOG1196|consen 235 MLDAVLLNMNLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFLDFLLPYIKEGKITYVEDIA 314 (343)
T ss_pred HHHHHHHhhhhccceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechhhhhHHHHHHHHHHHhcCceEEehhHH
Confidence 47899999999999999999999987666445577889999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHhhcCCCcceEEEEeecC
Q 033914 81 EGLEKAPSALVGIFTGQNVGKQLVVIARE 109 (109)
Q Consensus 81 ~~l~~~~~A~~~l~~g~~~GKvvv~~~~~ 109 (109)
.+||.+|+||..|++|++.||.++.+++|
T Consensus 315 ~Glen~P~A~vglf~GkNvGKqiv~va~E 343 (343)
T KOG1196|consen 315 DGLENGPSALVGLFHGKNVGKQLVKVARE 343 (343)
T ss_pred HHHhccHHHHHHHhccCcccceEEEeecC
Confidence 99999999999999999999999999875
No 3
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.76 E-value=9.3e-18 Score=117.58 Aligned_cols=108 Identities=59% Similarity=1.046 Sum_probs=86.8
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
++.++++++++||+++||..++...+.+....++..++.|++++.|++.+.+....++.++++++++++|+|++.++.++
T Consensus 241 ~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~~~G~l~~~~~~~~ 320 (348)
T PLN03154 241 LDAALLNMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIVYIEDMSE 320 (348)
T ss_pred HHHHHHHhccCCEEEEECccccCCCCCCCCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHHHHHCCCccCceeccc
Confidence 46789999999999999987653211010123456788899999999876554445667889999999999999888789
Q ss_pred ccchHHHHHHHhhcCCCcceEEEEeecC
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVVIARE 109 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~~~~~ 109 (109)
||+++++||+.+++|+..||+||++++|
T Consensus 321 ~L~~~~~A~~~l~~g~~~GKvVl~~~~~ 348 (348)
T PLN03154 321 GLESAPAALVGLFSGKNVGKQVIRVAKE 348 (348)
T ss_pred CHHHHHHHHHHHHcCCCCceEEEEecCC
Confidence 9999999999999999999999999765
No 4
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=99.68 E-value=4.6e-16 Score=108.14 Aligned_cols=97 Identities=19% Similarity=0.185 Sum_probs=83.8
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
+++++++|+++|+++++|..... +..+++...++.+++++.|+..++ +.+.++++++.++|+|+|.+..++
T Consensus 242 ~~~~l~~l~~~G~~v~vG~~~~~----~~~~~~~~~li~~~~~i~GS~~g~-----~~d~~e~l~f~~~g~Ikp~i~e~~ 312 (339)
T COG1064 242 LEPSLKALRRGGTLVLVGLPGGG----PIPLLPAFLLILKEISIVGSLVGT-----RADLEEALDFAAEGKIKPEILETI 312 (339)
T ss_pred HHHHHHHHhcCCEEEEECCCCCc----ccCCCCHHHhhhcCeEEEEEecCC-----HHHHHHHHHHHHhCCceeeEEeeE
Confidence 68899999999999999997411 122456778999999999999886 457899999999999999996568
Q ss_pred ccchHHHHHHHhhcCCCcceEEEEee
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVVIA 107 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~~~ 107 (109)
+|+++++||+.|++++..|+.|+.+.
T Consensus 313 ~l~~in~A~~~m~~g~v~gR~Vi~~~ 338 (339)
T COG1064 313 PLDEINEAYERMEKGKVRGRAVIDMS 338 (339)
T ss_pred CHHHHHHHHHHHHcCCeeeEEEecCC
Confidence 99999999999999999999998764
No 5
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.65 E-value=5.3e-16 Score=103.74 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=86.0
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccc---cchHHHHHHHHHHHHcCceeeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFY---HQYPKFLELVMRAIKEGKLVYVED 78 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~---~~~~~~~~~~~~~~~~G~l~~~~~ 78 (109)
++.++.+|+++|.+|.+|..++. ..|+++..+-.|.+++.--++..|. .++..+..+++.++.+|.|++.++
T Consensus 228 ~~~sl~~Lk~~G~mVSfG~asgl-----~~p~~l~~ls~k~l~lvrpsl~gYi~g~~el~~~v~rl~alvnsg~lk~~I~ 302 (336)
T KOG1197|consen 228 FAKSLAALKPMGKMVSFGNASGL-----IDPIPLNQLSPKALQLVRPSLLGYIDGEVELVSYVARLFALVNSGHLKIHID 302 (336)
T ss_pred hHHHHHHhccCceEEEeccccCC-----CCCeehhhcChhhhhhccHhhhcccCCHHHHHHHHHHHHHHhhcCccceeee
Confidence 67889999999999999998884 2356677777777766554444454 345667899999999999999999
Q ss_pred eecccchHHHHHHHhhcCCCcceEEEEeecC
Q 033914 79 IAEGLEKAPSALVGIFTGQNVGKQLVVIARE 109 (109)
Q Consensus 79 ~~~~l~~~~~A~~~l~~g~~~GKvvv~~~~~ 109 (109)
.+|||+++.+|+.+|+++++.||+++.+++|
T Consensus 303 ~~ypls~vadA~~diesrktvGkvlLlp~~~ 333 (336)
T KOG1197|consen 303 HVYPLSKVADAHADIESRKTVGKVLLLPGPE 333 (336)
T ss_pred eecchHHHHHHHHHHHhhhccceEEEeCCcc
Confidence 9999999999999999999999999998764
No 6
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=99.57 E-value=2.2e-14 Score=100.09 Aligned_cols=103 Identities=16% Similarity=0.081 Sum_probs=77.7
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCcee--eeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLV--YVEDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~--~~~~~ 79 (109)
++.++++++++|+++++|...+. ....+.++..++.|++++.|++.+.+.....+.++++++++++|+++ +.++.
T Consensus 243 ~~~~~~~l~~~G~iv~~G~~~~~---~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~ 319 (347)
T PRK10309 243 VELAIEIAGPRAQLALVGTLHHD---LHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAH 319 (347)
T ss_pred HHHHHHHhhcCCEEEEEccCCCC---cccChhhhhHHhhcCcEEEEEeccccCCcchhHHHHHHHHHHcCCCCchhheEE
Confidence 56789999999999999976531 11111233467889999999876422111135688899999999985 44666
Q ss_pred ecccchHHHHHHHhhcCCCcceEEEEee
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQLVVIA 107 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvvv~~~ 107 (109)
+++|+|+++||+.+++++..||+|++++
T Consensus 320 ~~~l~~~~~A~~~~~~~~~~gKvvv~~~ 347 (347)
T PRK10309 320 RGSFESFAQAVRDLAGNPMPGKVLLQIP 347 (347)
T ss_pred EeeHHHHHHHHHHHhcCCcceEEEEeCC
Confidence 6899999999999999988999999864
No 7
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=99.56 E-value=4e-14 Score=100.26 Aligned_cols=94 Identities=14% Similarity=0.098 Sum_probs=78.3
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
++.++++++++|+++.+|...+ + .++++..++.+++++.|++.+. .+.+.++++++++|++++.+. ++
T Consensus 256 ~~~~~~~l~~~G~iv~vG~~~~-----~-~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~l~~~g~i~~~i~-~~ 323 (375)
T PLN02178 256 LLPLFSLLKVSGKLVALGLPEK-----P-LDLPIFPLVLGRKMVGGSQIGG-----MKETQEMLEFCAKHKIVSDIE-LI 323 (375)
T ss_pred HHHHHHhhcCCCEEEEEccCCC-----C-CccCHHHHHhCCeEEEEeCccC-----HHHHHHHHHHHHhCCCcccEE-EE
Confidence 4678999999999999997543 1 2356677888999999987643 346788999999999998874 58
Q ss_pred ccchHHHHHHHhhcCCCcceEEEEee
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVVIA 107 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~~~ 107 (109)
||+|+++||+.+++++..||+|+.+.
T Consensus 324 ~l~~~~~A~~~~~~~~~~gkvvi~~~ 349 (375)
T PLN02178 324 KMSDINSAMDRLAKSDVRYRFVIDVA 349 (375)
T ss_pred eHHHHHHHHHHHHcCCCceEEEEEec
Confidence 99999999999999998999999873
No 8
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=99.56 E-value=4.6e-14 Score=99.19 Aligned_cols=95 Identities=16% Similarity=0.131 Sum_probs=79.3
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
++.++++++++|+++.+|..++. .+++...++.+++++.|++.+. ...+.++++++++|++++.+. ++
T Consensus 258 ~~~~~~~l~~~G~iv~~G~~~~~------~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~~~~~g~l~~~i~-~~ 325 (357)
T PLN02514 258 LEPYLSLLKLDGKLILMGVINTP------LQFVTPMLMLGRKVITGSFIGS-----MKETEEMLEFCKEKGLTSMIE-VV 325 (357)
T ss_pred HHHHHHHhccCCEEEEECCCCCC------CcccHHHHhhCCcEEEEEecCC-----HHHHHHHHHHHHhCCCcCcEE-EE
Confidence 46789999999999999986531 1355667889999999998654 346788999999999998775 68
Q ss_pred ccchHHHHHHHhhcCCCcceEEEEeec
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVVIAR 108 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~~~~ 108 (109)
||+|+.+||+.+++++..||+|+.++.
T Consensus 326 ~l~~~~~A~~~~~~~~~~gk~v~~~~~ 352 (357)
T PLN02514 326 KMDYVNTAFERLEKNDVRYRFVVDVAG 352 (357)
T ss_pred cHHHHHHHHHHHHcCCCceeEEEEccc
Confidence 999999999999999888999998854
No 9
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.54 E-value=6.7e-14 Score=96.13 Aligned_cols=95 Identities=13% Similarity=0.181 Sum_probs=83.9
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
++.+++++|++|++|++|.+..+ ..++...++.+.++|.|+.+++ +.+.+++++++++|.|++.+.. .
T Consensus 262 ~~~~~~~lk~~Gt~V~vg~p~~~------~~~~~~~lil~~~~I~GS~vG~-----~ket~E~Ldf~a~~~ik~~IE~-v 329 (360)
T KOG0023|consen 262 LEPLLGLLKVNGTLVLVGLPEKP------LKLDTFPLILGRKSIKGSIVGS-----RKETQEALDFVARGLIKSPIEL-V 329 (360)
T ss_pred hHHHHHHhhcCCEEEEEeCcCCc------ccccchhhhcccEEEEeecccc-----HHHHHHHHHHHHcCCCcCceEE-E
Confidence 67899999999999999997752 2456677899999999999987 4578899999999999999876 4
Q ss_pred ccchHHHHHHHhhcCCCcceEEEEeec
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVVIAR 108 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~~~~ 108 (109)
+++++++||++|+.++..+|.||+++.
T Consensus 330 ~~~~v~~a~erm~kgdV~yRfVvD~s~ 356 (360)
T KOG0023|consen 330 KLSEVNEAYERMEKGDVRYRFVVDVSK 356 (360)
T ss_pred ehhHHHHHHHHHHhcCeeEEEEEEccc
Confidence 999999999999999999999998865
No 10
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=99.53 E-value=8.4e-14 Score=98.05 Aligned_cols=94 Identities=11% Similarity=0.075 Sum_probs=77.2
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
+++++++++++|+++.+|...+. ..+++..++.++.++.|++.+. .+.+.++++++++|++++.+. +|
T Consensus 261 ~~~~~~~l~~~G~iv~vG~~~~~------~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~li~~g~i~~~~~-~~ 328 (360)
T PLN02586 261 LGPLLGLLKVNGKLITLGLPEKP------LELPIFPLVLGRKLVGGSDIGG-----IKETQEMLDFCAKHNITADIE-LI 328 (360)
T ss_pred HHHHHHHhcCCcEEEEeCCCCCC------CccCHHHHHhCCeEEEEcCcCC-----HHHHHHHHHHHHhCCCCCcEE-EE
Confidence 46789999999999999975431 1355667788999999987543 346888999999999998774 68
Q ss_pred ccchHHHHHHHhhcCCCcceEEEEee
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVVIA 107 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~~~ 107 (109)
||+|+++||+.+++++..||+|+.+.
T Consensus 329 ~l~~~~~A~~~~~~~~~~gkvvi~~~ 354 (360)
T PLN02586 329 RMDEINTAMERLAKSDVRYRFVIDVA 354 (360)
T ss_pred eHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 99999999999999998999999873
No 11
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=99.53 E-value=1.2e-13 Score=96.17 Aligned_cols=92 Identities=12% Similarity=0.047 Sum_probs=74.6
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
++.++++++++|+++++|...+. . .++++..++.+++++.|++... ++.+.++++++++|++++. +.+|
T Consensus 237 ~~~~~~~l~~~G~~v~~G~~~~~---~--~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~l~~~g~i~~i-~~~~ 305 (329)
T TIGR02822 237 VPPALEALDRGGVLAVAGIHLTD---T--PPLNYQRHLFYERQIRSVTSNT-----RADAREFLELAAQHGVRVT-THTY 305 (329)
T ss_pred HHHHHHhhCCCcEEEEEeccCcc---C--CCCCHHHHhhCCcEEEEeecCC-----HHHHHHHHHHHHhCCCeeE-EEEE
Confidence 57889999999999999974331 1 1355667788999999987532 3457788999999999864 5568
Q ss_pred ccchHHHHHHHhhcCCCcceEEE
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLV 104 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv 104 (109)
||||+++||+.+++++..||+|+
T Consensus 306 ~l~~~~~A~~~~~~~~~~Gkvvl 328 (329)
T TIGR02822 306 PLSEADRALRDLKAGRFDGAAVL 328 (329)
T ss_pred eHHHHHHHHHHHHcCCCceEEEe
Confidence 99999999999999999999987
No 12
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=99.52 E-value=1.4e-14 Score=88.05 Aligned_cols=90 Identities=24% Similarity=0.151 Sum_probs=57.2
Q ss_pred HHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccc--cchHHHHHHHHHHHHcCceeeeeeee
Q 033914 3 DAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFY--HQYPKFLELVMRAIKEGKLVYVEDIA 80 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~--~~~~~~~~~~~~~~~~G~l~~~~~~~ 80 (109)
+.+.++| ++|+++.+|. .- .......+...+.+.+..... +...+.++++.+++++|+|+|.+..+
T Consensus 36 ~~~~~~l-~~G~~v~i~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~G~l~~~i~~~ 103 (127)
T PF13602_consen 36 DASRKLL-PGGRVVSIGG-DL----------PSFARRLKGRSIRYSFLFSVDPNAIRAEALEELAELVAEGKLKPPIDRV 103 (127)
T ss_dssp GGCCCTE-EEEEEEEE-S-HH----------HHHHHHHHCHHCEEECCC-H--HHHHHHHHHHHHHHHHTTSS---EEEE
T ss_pred HHHHHHC-CCCEEEEECC-cc----------cchhhhhcccceEEEEEEecCCCchHHHHHHHHHHHHHCCCeEEeeccE
Confidence 3444566 9999999984 10 011111223333333332111 11345699999999999999999989
Q ss_pred cccchHHHHHHHhhcCCCcceEEE
Q 033914 81 EGLEKAPSALVGIFTGQNVGKQLV 104 (109)
Q Consensus 81 ~~l~~~~~A~~~l~~g~~~GKvvv 104 (109)
|||+++++||+.++++++.||+||
T Consensus 104 f~l~~~~~A~~~l~~~~~~GKvVl 127 (127)
T PF13602_consen 104 FPLEEAPEAHERLESGHARGKVVL 127 (127)
T ss_dssp EEGGGHHHHHHHHHCT--SSEEEE
T ss_pred ECHHHHHHHHHHHHhCCCCCeEeC
Confidence 999999999999999999999997
No 13
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.52 E-value=2.3e-13 Score=94.76 Aligned_cols=105 Identities=64% Similarity=1.083 Sum_probs=81.1
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
++.++++++++|+++.+|..++..........+...++.+++++.|++...+.+...+.+.++++++++|++++.+..++
T Consensus 234 ~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~ 313 (338)
T cd08295 234 LDAVLLNMNLHGRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYVEDIAD 313 (338)
T ss_pred HHHHHHHhccCcEEEEecccccCCCCCCCCccCHHHHhhccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEceeeccc
Confidence 46789999999999999976543110000113345678899999998766554334566888999999999998877779
Q ss_pred ccchHHHHHHHhhcCCCcceEEEEe
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
+|+++++||+.+++++..||+|+++
T Consensus 314 ~l~~~~~A~~~~~~~~~~GkvVl~~ 338 (338)
T cd08295 314 GLESAPEAFVGLFTGSNIGKQVVKV 338 (338)
T ss_pred CHHHHHHHHHHHhcCCCCceEEEEC
Confidence 9999999999999999999999864
No 14
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.50 E-value=1.7e-13 Score=94.80 Aligned_cols=98 Identities=17% Similarity=0.197 Sum_probs=79.1
Q ss_pred HHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeeccccc-chHHHHHHHHHHHHcCceeeeeeeec
Q 033914 3 DAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYH-QYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
..++++++++||++.+|..++.+ ...++...++.+++++.|++...+.. ..++.+.+++++++ |++++.++.+|
T Consensus 226 ~~~~~~l~~~G~~v~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~ 300 (324)
T cd08291 226 GQILLAMPYGSTLYVYGYLSGKL----DEPIDPVDLIFKNKSIEGFWLTTWLQKLGPEVVKKLKKLVK-TELKTTFASRY 300 (324)
T ss_pred HHHHHhhCCCCEEEEEEecCCCC----cccCCHHHHhhcCcEEEEEEHHHhhcccCHHHHHHHHHHHh-CccccceeeEE
Confidence 45788999999999999866531 11244567788999999998765432 23567889999998 99999888889
Q ss_pred ccchHHHHHHHhhcCCCcceEEEE
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
+|||+++||+.+++++..||+++.
T Consensus 301 ~l~~~~~a~~~~~~~~~~Gkvv~~ 324 (324)
T cd08291 301 PLALTLEAIAFYSKNMSTGKKLLI 324 (324)
T ss_pred cHHHHHHHHHHHHhCCCCCeEEeC
Confidence 999999999999999999999873
No 15
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=99.49 E-value=2.3e-13 Score=95.07 Aligned_cols=93 Identities=14% Similarity=0.116 Sum_probs=76.0
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceee--eeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVY--VEDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~--~~~~ 79 (109)
++.++++++++|+++.+|..... .++++..++.|++++.|++.. .+.+.++++++++|++++ .++.
T Consensus 249 ~~~~~~~l~~~G~iv~~G~~~~~------~~~~~~~~~~k~~~i~g~~~~------~~~~~~~~~l~~~g~i~~~~~i~~ 316 (343)
T PRK09880 249 INTCLEVTRAKGVMVQVGMGGAP------PEFPMMTLIVKEISLKGSFRF------TEEFNTAVSWLANGVINPLPLLSA 316 (343)
T ss_pred HHHHHHHhhcCCEEEEEccCCCC------CccCHHHHHhCCcEEEEEeec------cccHHHHHHHHHcCCCCchhheEE
Confidence 56789999999999999974321 245667788999999998742 245788999999999986 4556
Q ss_pred ecccchHHHHHHHhhcCCCcceEEEEe
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
+++|+|+++||+.+++++..||+++.+
T Consensus 317 ~~~l~~~~~A~~~~~~~~~~gKvvl~~ 343 (343)
T PRK09880 317 EYPFTDLEEALIFAGDKTQAAKVQLVF 343 (343)
T ss_pred EEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence 789999999999999988889999864
No 16
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.49 E-value=1.6e-13 Score=94.72 Aligned_cols=93 Identities=17% Similarity=0.176 Sum_probs=74.5
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee--eee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV--EDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~--~~~ 79 (109)
+++++++++++|+++++|...+. ..+++..++.|++++.|+..+. ++.+.++++|+++|++++. ++.
T Consensus 214 ~~~~~~~l~~~G~iv~~G~~~~~------~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~l~~~g~i~~~~~it~ 282 (308)
T TIGR01202 214 IDTLVRRLAKGGEIVLAGFYTEP------VNFDFVPAFMKEARLRIAAEWQ-----PGDLHAVRELIESGALSLDGLITH 282 (308)
T ss_pred HHHHHHhhhcCcEEEEEeecCCC------cccccchhhhcceEEEEecccc-----hhHHHHHHHHHHcCCCChhhccce
Confidence 57889999999999999985431 2345566788999999875321 4568899999999999874 555
Q ss_pred ecccchHHHHHHHhhcCCCcceEEEE
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
++||+|+++||+.+.+++..||++++
T Consensus 283 ~~~l~~~~~A~~~~~~~~~~~Kv~~~ 308 (308)
T TIGR01202 283 QRPASDAAEAYMTAFSDPDCLKMILD 308 (308)
T ss_pred eecHHHHHHHHHHHhcCcCceEEEeC
Confidence 68999999999999887778999874
No 17
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=99.47 E-value=5.2e-13 Score=93.21 Aligned_cols=100 Identities=24% Similarity=0.311 Sum_probs=79.1
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeeccc-ccchHHHHHHHHHHHHcCceeeeeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDF-YHQYPKFLELVMRAIKEGKLVYVEDIA 80 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~-~~~~~~~~~~~~~~~~~G~l~~~~~~~ 80 (109)
+..++++|+++|+++.||..++ . +..+++...++.+.+++.|++.... .+...+.++++.+++++|++++.++.+
T Consensus 224 ~~~~l~~l~~~G~lv~ig~~~g-~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i~~~ 299 (326)
T COG0604 224 FAASLAALAPGGRLVSIGALSG-G---PPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASGKLKPVIDRV 299 (326)
T ss_pred HHHHHHHhccCCEEEEEecCCC-C---CccccCHHHHhhccEEEEEecceecchHHHHHHHHHHHHHHHcCCCcceeccE
Confidence 5678999999999999999884 1 1224556778889999999987532 134557888999999999999999999
Q ss_pred cccchHH--HHHHHhhcCCCcceEEEEe
Q 033914 81 EGLEKAP--SALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 81 ~~l~~~~--~A~~~l~~g~~~GKvvv~~ 106 (109)
|||+|.+ .|+..++ +++.||+|+++
T Consensus 300 ~~l~e~~~a~a~~~~~-~~~~GKvvl~~ 326 (326)
T COG0604 300 YPLAEAPAAAAHLLLE-RRTTGKVVLKV 326 (326)
T ss_pred echhhhHHHHHHHHcc-cCCcceEEEeC
Confidence 9999954 4555555 68899999975
No 18
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=99.46 E-value=4.8e-13 Score=94.40 Aligned_cols=97 Identities=12% Similarity=0.113 Sum_probs=76.7
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee--eee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV--EDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~--~~~ 79 (109)
++.++++++++|+++.+|..++.. ...++...++.|++++.|++.+.+. ..+.+.++++++++|++++. ++.
T Consensus 273 ~~~~~~~l~~~G~iv~~G~~~~~~----~~~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~l~~~g~i~~~~~i~~ 346 (371)
T cd08281 273 LETAYEITRRGGTTVTAGLPDPEA----RLSVPALSLVAEERTLKGSYMGSCV--PRRDIPRYLALYLSGRLPVDKLLTH 346 (371)
T ss_pred HHHHHHHHhcCCEEEEEccCCCCc----eeeecHHHHhhcCCEEEEEecCCCC--hHHHHHHHHHHHHcCCCCchhheee
Confidence 467899999999999999865321 1235666789999999999876542 13467888999999999864 456
Q ss_pred ecccchHHHHHHHhhcCCCcceEEE
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQLV 104 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvvv 104 (109)
+++|+|+++||+.+++++..||+|+
T Consensus 347 ~~~l~~~~~A~~~~~~~~~~~~vi~ 371 (371)
T cd08281 347 RLPLDEINEGFDRLAAGEAVRQVIL 371 (371)
T ss_pred eecHHHHHHHHHHHhCCCceeeeeC
Confidence 6899999999999999998888764
No 19
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.46 E-value=6.3e-13 Score=91.73 Aligned_cols=105 Identities=37% Similarity=0.665 Sum_probs=80.5
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCc-cccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSE-GVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIA 80 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~-~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~ 80 (109)
++.++++++++|+++.+|..+.++..... .......++.+++++.|++...+....++.++++++++++|++++....+
T Consensus 224 ~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~ 303 (329)
T cd08294 224 SSTVLSHMNDFGRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKYREHVT 303 (329)
T ss_pred HHHHHHhhccCCEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCCcCCcccc
Confidence 45788999999999999976543211110 01223457889999999876544334456788999999999999877677
Q ss_pred cccchHHHHHHHhhcCCCcceEEEEe
Q 033914 81 EGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 81 ~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
++|+++++||+.+++++..||+|+++
T Consensus 304 ~~l~~~~~A~~~~~~~~~~gkvvv~~ 329 (329)
T cd08294 304 EGFENMPQAFIGMLKGENTGKAIVKV 329 (329)
T ss_pred cCHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 89999999999999999999999874
No 20
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.44 E-value=1.1e-12 Score=91.77 Aligned_cols=94 Identities=11% Similarity=0.079 Sum_probs=74.7
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee-eeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV-EDIA 80 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~-~~~~ 80 (109)
++.++++++++|+++++|..++. .++++..++.++.++.|++... ++.+.++++++++|++++. ...+
T Consensus 255 ~~~~~~~l~~~G~iv~~G~~~~~------~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~i~~g~i~~~~~i~~ 323 (349)
T TIGR03201 255 QESALSLLSHGGTLVVVGYTMAK------TEYRLSNLMAFHARALGNWGCP-----PDRYPAALDLVLDGKIQLGPFVER 323 (349)
T ss_pred HHHHHHHHhcCCeEEEECcCCCC------cccCHHHHhhcccEEEEEecCC-----HHHHHHHHHHHHcCCCCcccceEE
Confidence 35688999999999999986531 1345567788889999987532 3467889999999999764 2235
Q ss_pred cccchHHHHHHHhhcCCCcceEEEEe
Q 033914 81 EGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 81 ~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
+||+|+++||+.+++++..||+++++
T Consensus 324 ~~l~~~~~A~~~~~~~~~~~k~~~~~ 349 (349)
T TIGR03201 324 RPLDQIEHVFAAAHHHKLKRRAILTP 349 (349)
T ss_pred ecHHHHHHHHHHHHcCCccceEEecC
Confidence 89999999999999999999999864
No 21
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.44 E-value=1.3e-12 Score=90.46 Aligned_cols=104 Identities=35% Similarity=0.563 Sum_probs=78.9
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccc-cchHHHhhcceeeeeeeecccc-cchHHHHHHHHHHHHcCceeeeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGV-HNLMQVVGKRIRMEGFLAGDFY-HQYPKFLELVMRAIKEGKLVYVEDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~-~~~~~~~~k~~~~~G~~~~~~~-~~~~~~~~~~~~~~~~G~l~~~~~~ 79 (109)
++.++++++++||++.+|..++......... .....+..+++++.|++...+. ....+.+.++++++++|++++.+..
T Consensus 220 ~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~ 299 (325)
T TIGR02825 220 SNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEVRQKALKELLKWVLEGKIQYKEYV 299 (325)
T ss_pred HHHHHHHhCcCcEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhhhhhHHHHHHHHHHHHCCCcccceec
Confidence 4678999999999999998654311001111 1234567789999998764432 2234578899999999999998878
Q ss_pred ecccchHHHHHHHhhcCCCcceEEEE
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
+++|+++++||+.+++++..||+|++
T Consensus 300 ~~~l~~~~~A~~~~~~~~~~gkvVv~ 325 (325)
T TIGR02825 300 IEGFENMPAAFMGMLKGENLGKTIVK 325 (325)
T ss_pred cccHHHHHHHHHHHhcCCCCCeEEeC
Confidence 89999999999999999999999973
No 22
>PLN02827 Alcohol dehydrogenase-like
Probab=99.43 E-value=1.5e-12 Score=92.23 Aligned_cols=97 Identities=8% Similarity=0.016 Sum_probs=77.0
Q ss_pred HHHHHHhhccC-CeEEEEccccccCCCCCccccch-HHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceee--ee
Q 033914 2 LDAVRLNMRIR-GRIAVCGMISQYNLEKSEGVHNL-MQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVY--VE 77 (109)
Q Consensus 2 ~~~~l~~l~~~-Griv~~G~~~~~~~~~~~~~~~~-~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~--~~ 77 (109)
+..++++++++ |+++++|...+. + .++. ..++.|++++.|++.+.+. .+..+.++++++++|+|++ .+
T Consensus 277 ~~~~l~~l~~g~G~iv~~G~~~~~----~--~~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~g~i~~~~~i 348 (378)
T PLN02827 277 ATTALQSCSDGWGLTVTLGVPKAK----P--EVSAHYGLFLSGRTLKGSLFGGWK--PKSDLPSLVDKYMNKEIMIDEFI 348 (378)
T ss_pred HHHHHHhhccCCCEEEEECCcCCC----c--cccccHHHHhcCceEEeeecCCCc--hhhhHHHHHHHHHcCCCChHHhe
Confidence 56789999999 999999985431 1 2222 3578899999999876542 2346788999999999998 56
Q ss_pred eeecccchHHHHHHHhhcCCCcceEEEEee
Q 033914 78 DIAEGLEKAPSALVGIFTGQNVGKQLVVIA 107 (109)
Q Consensus 78 ~~~~~l~~~~~A~~~l~~g~~~GKvvv~~~ 107 (109)
+.++||||+++||+.+++++. +|+||.++
T Consensus 349 ~~~~~le~~~~A~~~~~~~~~-~k~vi~~~ 377 (378)
T PLN02827 349 THNLSFDEINKAFELMREGKC-LRCVIHMP 377 (378)
T ss_pred EEEecHHHHHHHHHHHHCCCc-eEEEEEec
Confidence 667899999999999999876 79999875
No 23
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.38 E-value=4.5e-12 Score=90.69 Aligned_cols=97 Identities=16% Similarity=0.156 Sum_probs=75.1
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee--eee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV--EDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~--~~~ 79 (109)
++.++++++++|++++++.....+ ...++++..++.+++++.|++.+. +..+.++++++++|++++. ++.
T Consensus 271 ~~~a~~~l~~~G~~v~~~g~~~~~---~~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~li~~g~i~~~~~it~ 342 (410)
T cd08238 271 VEEADTLLAPDGCLNFFAGPVDKN---FSAPLNFYNVHYNNTHYVGTSGGN-----TDDMKEAIDLMAAGKLNPARMVTH 342 (410)
T ss_pred HHHHHHHhccCCeEEEEEccCCCC---ccccccHHHhhhcCcEEEEeCCCC-----HHHHHHHHHHHHcCCCchhhcEEE
Confidence 567899999999988875422110 012456677889999999987532 3468889999999999984 566
Q ss_pred ecccchHHHHHHHhhcCCCcceEEEEee
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQLVVIA 107 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvvv~~~ 107 (109)
++||+|+++||+.+. ++..||+|+.+.
T Consensus 343 ~~~l~~~~~A~~~~~-~~~~gKvvl~~~ 369 (410)
T cd08238 343 IGGLNAAAETTLNLP-GIPGGKKLIYTQ 369 (410)
T ss_pred EecHHHHHHHHHHhh-ccCCceEEEECC
Confidence 789999999999999 777899999873
No 24
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=99.37 E-value=3.3e-12 Score=89.31 Aligned_cols=94 Identities=15% Similarity=0.101 Sum_probs=70.5
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcC-----ceeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEG-----KLVYV 76 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G-----~l~~~ 76 (109)
++.++++++++|+++++|...+. .++++..++.|++++.|++.+. ++.+.++++++++| .+++.
T Consensus 239 ~~~~~~~l~~~G~iv~~G~~~~~------~~~~~~~~~~k~~~i~g~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~ 307 (341)
T cd08237 239 INQIIDYIRPQGTIGLMGVSEYP------VPINTRMVLEKGLTLVGSSRST-----REDFERAVELLSRNPEVAEYLRKL 307 (341)
T ss_pred HHHHHHhCcCCcEEEEEeecCCC------cccCHHHHhhCceEEEEecccC-----HHHHHHHHHHHHhCCcccCChHHH
Confidence 57889999999999999974321 2355667889999999986532 34678899999999 46666
Q ss_pred eeeecccc---hHHHHHHHhhcCCCcceEEEEee
Q 033914 77 EDIAEGLE---KAPSALVGIFTGQNVGKQLVVIA 107 (109)
Q Consensus 77 ~~~~~~l~---~~~~A~~~l~~g~~~GKvvv~~~ 107 (109)
++.+++|+ ++++||+.+.++ ..||+|+.++
T Consensus 308 i~~~~~l~~l~~~~~a~~~~~~~-~~gKvvi~~~ 340 (341)
T cd08237 308 VGGVFPVRSINDIHRAFESDLTN-SWGKTVMEWE 340 (341)
T ss_pred hccccccccHHHHHHHHHHHhhc-CcceEEEEee
Confidence 66678875 566666666555 6899999864
No 25
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=99.35 E-value=1.2e-11 Score=85.95 Aligned_cols=90 Identities=20% Similarity=0.175 Sum_probs=71.9
Q ss_pred HHHHHhhccCCeEEEEccccccCCCCCccccc-hHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceee--eeee
Q 033914 3 DAVRLNMRIRGRIAVCGMISQYNLEKSEGVHN-LMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVY--VEDI 79 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~-~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~--~~~~ 79 (109)
+.++++++++|+++.+|..++. .++ ...++.|++++.|++.+. .+.+.++++++++|++++ .++.
T Consensus 246 ~~~~~~l~~~G~~v~~g~~~~~-------~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~~~~~g~i~~~~~i~~ 313 (339)
T cd08239 246 RLALEAVRPWGRLVLVGEGGEL-------TIEVSNDLIRKQRTLIGSWYFS-----VPDMEECAEFLARHKLEVDRLVTH 313 (339)
T ss_pred HHHHHHhhcCCEEEEEcCCCCc-------ccCcHHHHHhCCCEEEEEecCC-----HHHHHHHHHHHHcCCCChhHeEEE
Confidence 5688999999999999975432 122 245788999999987643 346788999999999875 4566
Q ss_pred ecccchHHHHHHHhhcCCCcceEEEE
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
+++|+|+++||+.+++++ .||+|++
T Consensus 314 ~~~l~~~~~a~~~~~~~~-~gKvvi~ 338 (339)
T cd08239 314 RFGLDQAPEAYALFAQGE-SGKVVFV 338 (339)
T ss_pred EecHHHHHHHHHHHHcCC-ceEEEEe
Confidence 689999999999998876 7999986
No 26
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=99.35 E-value=1.1e-11 Score=87.01 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=74.4
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee--eee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV--EDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~--~~~ 79 (109)
++.++++++++|+++++|...+. ....++...++.+++++.|++.+.+. ..+.++++++++++|++++. ++.
T Consensus 259 ~~~~~~~~~~~G~iv~~G~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~~~g~l~~~~~i~~ 332 (358)
T TIGR03451 259 YKQAFYARDLAGTVVLVGVPTPD----MTLELPLLDVFGRGGALKSSWYGDCL--PERDFPMLVDLYLQGRLPLDAFVTE 332 (358)
T ss_pred HHHHHHHhccCCEEEEECCCCCC----ceeeccHHHHhhcCCEEEEeecCCCC--cHHHHHHHHHHHHcCCCCchheEEE
Confidence 46788999999999999985431 01234556788899999998754321 13567889999999999864 566
Q ss_pred ecccchHHHHHHHhhcCCCcceEEEE
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
+|||+|+.+||+.+++++.. |+++.
T Consensus 333 ~~~l~~~~~A~~~~~~~~~~-k~~~~ 357 (358)
T TIGR03451 333 RIGLDDVEEAFDKMHAGDVL-RSVVE 357 (358)
T ss_pred EecHHHHHHHHHHHhCCCcc-eeEEe
Confidence 78999999999999988765 77764
No 27
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.33 E-value=2.6e-11 Score=84.43 Aligned_cols=105 Identities=31% Similarity=0.459 Sum_probs=72.5
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCc-cccc--hHHH-hhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSE-GVHN--LMQV-VGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVE 77 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~-~~~~--~~~~-~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~ 77 (109)
++.++++++++|+++.+|..++++.+.+. ...+ ...+ ..+.++..++....+....++.++++.+++++|++++..
T Consensus 237 ~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~ 316 (345)
T cd08293 237 SDTVISQMNENSHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFLVLNYKDKFEEAIAQLSQWVKEGKLKVKE 316 (345)
T ss_pred HHHHHHHhccCCEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEEEeeccHhHHHHHHHHHHHHHHCCCcccee
Confidence 46788999999999999975543211110 0111 1112 234555555543333333456788899999999999887
Q ss_pred eeecccchHHHHHHHhhcCCCcceEEEEe
Q 033914 78 DIAEGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 78 ~~~~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
..+++|+++.+||+.+++++..||+|+++
T Consensus 317 ~~~~~l~~~~~A~~~~~~~~~~gkvvl~~ 345 (345)
T cd08293 317 TVYEGLENAGEAFQSMMNGGNIGKQIVKV 345 (345)
T ss_pred EEeecHHHHHHHHHHHhcCCCCCeEEEEC
Confidence 77789999999999999999899999864
No 28
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=99.28 E-value=2.8e-11 Score=84.61 Aligned_cols=92 Identities=20% Similarity=0.151 Sum_probs=73.8
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceee--eeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVY--VEDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~--~~~~ 79 (109)
++.++++++++|+++.+|..+.. .++++..++.|++++.|++.+. .+.+.++++++++|+|++ .++.
T Consensus 255 ~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~~~~~g~l~~~~~i~~ 323 (351)
T cd08233 255 LDTAIDALRPRGTAVNVAIWEKP------ISFNPNDLVLKEKTLTGSICYT-----REDFEEVIDLLASGKIDAEPLITS 323 (351)
T ss_pred HHHHHHhccCCCEEEEEccCCCC------CccCHHHHHhhCcEEEEEeccC-----cchHHHHHHHHHcCCCChHHheEE
Confidence 46788999999999999986521 2356667889999999987532 246788999999999964 3566
Q ss_pred ecccchH-HHHHHHhhcCCCc-ceEEE
Q 033914 80 AEGLEKA-PSALVGIFTGQNV-GKQLV 104 (109)
Q Consensus 80 ~~~l~~~-~~A~~~l~~g~~~-GKvvv 104 (109)
+++|+|+ ++||+.+.+++.. ||+||
T Consensus 324 ~~~l~e~~~~a~~~~~~~~~~~~k~v~ 350 (351)
T cd08233 324 RIPLEDIVEKGFEELINDKEQHVKILV 350 (351)
T ss_pred EecHHHHHHHHHHHHHhCCCCceEEEe
Confidence 7899997 6899999999874 99987
No 29
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=99.26 E-value=2.9e-11 Score=84.81 Aligned_cols=93 Identities=14% Similarity=0.051 Sum_probs=70.0
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccc----hHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCc-----
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHN----LMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGK----- 72 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~----~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~----- 72 (109)
++.++++++++|+++++|..++.. . .+++ ...++.|++++.|++.+. ++.+.++++++.+++
T Consensus 252 ~~~~~~~l~~~G~~v~~G~~~~~~---~-~~~~~~~~~~~~~~k~~~i~g~~~~~-----~~~~~~~~~~l~~~~~~~~~ 322 (355)
T cd08230 252 AFEALPALAPNGVVILFGVPGGGR---E-FEVDGGELNRDLVLGNKALVGSVNAN-----KRHFEQAVEDLAQWKYRWPG 322 (355)
T ss_pred HHHHHHHccCCcEEEEEecCCCCC---c-cccChhhhhhhHhhcCcEEEEecCCc-----hhhHHHHHHHHHhccccccc
Confidence 567899999999999999866421 1 1222 346788999999987543 235677788888776
Q ss_pred -eeeeeeeecccchHHHHHHHhhcCCCcceEEEE
Q 033914 73 -LVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 73 -l~~~~~~~~~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
+++.++.+++|+|+++||+.++++. +|+||+
T Consensus 323 ~~~~~i~~~~~l~~~~~a~~~~~~~~--~K~v~~ 354 (355)
T cd08230 323 VLERLITRRVPLEEFAEALTEKPDGE--IKVVIE 354 (355)
T ss_pred chHHheeeeecHHHHHHHHHhcccCC--eEEEee
Confidence 5566777899999999999987654 699986
No 30
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=99.22 E-value=1.2e-10 Score=80.98 Aligned_cols=92 Identities=16% Similarity=0.167 Sum_probs=74.4
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
++.++++++++|+++.+|..+.. .+++...++.+++++.|+..+. ...+.+++++++++++++.+. ++
T Consensus 242 ~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~l~~~v~-~~ 309 (333)
T cd08296 242 ISALVGGLAPRGKLLILGAAGEP------VAVSPLQLIMGRKSIHGWPSGT-----ALDSEDTLKFSALHGVRPMVE-TF 309 (333)
T ss_pred HHHHHHHcccCCEEEEEecCCCC------CCcCHHHHhhcccEEEEeCcCC-----HHHHHHHHHHHHhCCCCceEE-EE
Confidence 46678999999999999985521 2345567789999999987432 346778888999999987754 68
Q ss_pred ccchHHHHHHHhhcCCCcceEEEE
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
+++|+.+||+.+++++..||+|++
T Consensus 310 ~~~~~~~a~~~~~~~~~~gk~v~~ 333 (333)
T cd08296 310 PLEKANEAYDRMMSGKARFRVVLT 333 (333)
T ss_pred EHHHHHHHHHHHHCCCCceeEEeC
Confidence 999999999999999999999874
No 31
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.21 E-value=1.1e-10 Score=80.62 Aligned_cols=96 Identities=18% Similarity=0.231 Sum_probs=76.5
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeee-
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIA- 80 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~- 80 (109)
+++++.+++.+|+++++|.-+. ..++++.....|++++.|++- |.. .++..+++++++|++++...+|
T Consensus 256 ~~aai~a~r~gGt~vlvg~g~~------~~~fpi~~v~~kE~~~~g~fr--y~~---~~y~~ai~li~sGki~~k~lIT~ 324 (354)
T KOG0024|consen 256 IRAAIKATRSGGTVVLVGMGAE------EIQFPIIDVALKEVDLRGSFR--YCN---GDYPTAIELVSSGKIDVKPLITH 324 (354)
T ss_pred HHHHHHHhccCCEEEEeccCCC------ccccChhhhhhheeeeeeeee--ecc---ccHHHHHHHHHcCCcCchhheec
Confidence 5789999999999999997443 235778889999999999984 432 2567777899999999775544
Q ss_pred -cccchHHHHHHHhhcCCC-cceEEEEeec
Q 033914 81 -EGLEKAPSALVGIFTGQN-VGKQLVVIAR 108 (109)
Q Consensus 81 -~~l~~~~~A~~~l~~g~~-~GKvvv~~~~ 108 (109)
|+|+++.+||+.+..++. .-|+++..++
T Consensus 325 r~~~~~~~eAf~~~~~~~~~~iKv~i~~~~ 354 (354)
T KOG0024|consen 325 RYKFDDADEAFETLQHGEEGVIKVIITGPE 354 (354)
T ss_pred ccccchHHHHHHHHHhCcCCceEEEEeCCC
Confidence 699999999999988775 4588887653
No 32
>PLN02740 Alcohol dehydrogenase-like
Probab=99.20 E-value=1.9e-10 Score=81.60 Aligned_cols=97 Identities=16% Similarity=0.100 Sum_probs=72.1
Q ss_pred HHHHHHhhccC-CeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceee--eee
Q 033914 2 LDAVRLNMRIR-GRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVY--VED 78 (109)
Q Consensus 2 ~~~~l~~l~~~-Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~--~~~ 78 (109)
++.++++++++ |+++++|..++. ...+++... +.+++++.|++.+.+.. ...+.++++++.+|++++ .++
T Consensus 282 ~~~a~~~~~~g~G~~v~~G~~~~~----~~~~~~~~~-~~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~g~i~~~~~it 354 (381)
T PLN02740 282 LREAFLSTHDGWGLTVLLGIHPTP----KMLPLHPME-LFDGRSITGSVFGDFKG--KSQLPNLAKQCMQGVVNLDGFIT 354 (381)
T ss_pred HHHHHHhhhcCCCEEEEEccCCCC----ceecccHHH-HhcCCeEEEEecCCCCc--HHHHHHHHHHHHcCCCChHHhee
Confidence 56788999997 999999986531 111233322 34789999998765432 346788999999999876 356
Q ss_pred eecccchHHHHHHHhhcCCCcceEEEEe
Q 033914 79 IAEGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 79 ~~~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
.+|+|+|+++||+.+++++. .|++|++
T Consensus 355 ~~~~l~e~~~A~~~~~~~~~-~k~~~~~ 381 (381)
T PLN02740 355 HELPFEKINEAFQLLEDGKA-LRCLLHL 381 (381)
T ss_pred EEecHHHHHHHHHHHHCCCc-eeEEEeC
Confidence 67899999999999998875 6999863
No 33
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.20 E-value=2.8e-10 Score=77.71 Aligned_cols=99 Identities=17% Similarity=0.128 Sum_probs=77.6
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhh--cceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVG--KRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~--k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~ 79 (109)
++.++++++++|+++.+|..+.. . .++++..+.. ++.++.++.... .....+.+..+++++++|++++.+..
T Consensus 205 ~~~~~~~l~~~G~~v~~g~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~ 278 (305)
T cd08270 205 LARALELLAPGGTVVSVGSSSGE---P--AVFNPAAFVGGGGGRRLYTFFLYD-GEPLAADLARLLGLVAAGRLDPRIGW 278 (305)
T ss_pred HHHHHHHhcCCCEEEEEeccCCC---c--ccccHHHHhcccccceEEEEEccC-HHHHHHHHHHHHHHHHCCCccceecc
Confidence 46789999999999999975421 1 1344445554 699999988653 22345678889999999999987767
Q ss_pred ecccchHHHHHHHhhcCCCcceEEEEe
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
+++++++++||+.+.++...||+|+.+
T Consensus 279 ~~~~~~~~~a~~~~~~~~~~gkvvi~~ 305 (305)
T cd08270 279 RGSWTEIDEAAEALLARRFRGKAVLDV 305 (305)
T ss_pred EEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 789999999999999999999999864
No 34
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=99.20 E-value=2.1e-10 Score=80.84 Aligned_cols=95 Identities=11% Similarity=0.019 Sum_probs=71.1
Q ss_pred HHHHHHhhccC-CeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee--ee
Q 033914 2 LDAVRLNMRIR-GRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV--ED 78 (109)
Q Consensus 2 ~~~~l~~l~~~-Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~--~~ 78 (109)
++.++++++++ |+++++|..+... ..+++...+ .+++++.|++.+.+. .+..+.++++++.+|++++. +.
T Consensus 271 ~~~~~~~~~~~~g~~v~~g~~~~~~----~~~~~~~~~-~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~i~ 343 (369)
T cd08301 271 MISAFECVHDGWGVTVLLGVPHKDA----VFSTHPMNL-LNGRTLKGTLFGGYK--PKTDLPNLVEKYMKKELELEKFIT 343 (369)
T ss_pred HHHHHHHhhcCCCEEEEECcCCCCc----ccccCHHHH-hcCCeEEEEecCCCC--hHHHHHHHHHHHHcCCCCcHHhee
Confidence 45678999996 9999999865321 112333333 478999999876542 23467889999999998764 55
Q ss_pred eecccchHHHHHHHhhcCCCcceEEE
Q 033914 79 IAEGLEKAPSALVGIFTGQNVGKQLV 104 (109)
Q Consensus 79 ~~~~l~~~~~A~~~l~~g~~~GKvvv 104 (109)
.++||+|+++||+.+++++. .|+++
T Consensus 344 ~~~~l~~~~~A~~~~~~~~~-~k~~~ 368 (369)
T cd08301 344 HELPFSEINKAFDLLLKGEC-LRCIL 368 (369)
T ss_pred eeecHHHHHHHHHHHHCCCc-eeEEe
Confidence 66899999999999999885 59886
No 35
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=99.19 E-value=9.2e-11 Score=82.64 Aligned_cols=96 Identities=20% Similarity=0.124 Sum_probs=75.0
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeee-
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIA- 80 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~- 80 (109)
+++++++++++|+++++|...+. . .+++...++.|++++.|++.... +..+..+++++++|++++...++
T Consensus 252 ~~~ai~~~r~gG~v~~vGv~~~~----~-~~~~~~~~~~kel~l~gs~~~~~----~~~~~~~~~ll~~g~i~~~~lit~ 322 (350)
T COG1063 252 LDQALEALRPGGTVVVVGVYGGE----D-IPLPAGLVVSKELTLRGSLRPSG----REDFERALDLLASGKIDPEKLITH 322 (350)
T ss_pred HHHHHHHhcCCCEEEEEeccCCc----c-CccCHHHHHhcccEEEeccCCCC----cccHHHHHHHHHcCCCChhHceEe
Confidence 57899999999999999997652 1 03566789999999999954221 23577888899999999874433
Q ss_pred -cccchHHHHHHHhhcCCC-cceEEEEe
Q 033914 81 -EGLEKAPSALVGIFTGQN-VGKQLVVI 106 (109)
Q Consensus 81 -~~l~~~~~A~~~l~~g~~-~GKvvv~~ 106 (109)
++|+|+++||+.+.+++. ..|+++.+
T Consensus 323 ~~~~~~~~~a~~~~~~~~~~~~Kv~i~~ 350 (350)
T COG1063 323 RLPLDDAAEAYELFADRKEEAIKVVLKP 350 (350)
T ss_pred eccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 489999999999998654 56888763
No 36
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.17 E-value=3.1e-10 Score=79.05 Aligned_cols=92 Identities=14% Similarity=0.045 Sum_probs=75.3
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
+++++++++++|+++.+|..... ..+++..++.+++++.|++... .+.++++++++++|++++.+ .++
T Consensus 246 ~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~l~~~~-~~~ 313 (337)
T cd05283 246 LDPYLSLLKPGGTLVLVGAPEEP------LPVPPFPLIFGRKSVAGSLIGG-----RKETQEMLDFAAEHGIKPWV-EVI 313 (337)
T ss_pred HHHHHHHhcCCCEEEEEeccCCC------CccCHHHHhcCceEEEEecccC-----HHHHHHHHHHHHhCCCccce-EEE
Confidence 56789999999999999975542 1345566778999999987643 45788899999999998765 457
Q ss_pred ccchHHHHHHHhhcCCCcceEEEE
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
+++++++||+.++++++.||+|++
T Consensus 314 ~~~~~~~a~~~~~~~~~~~k~v~~ 337 (337)
T cd05283 314 PMDGINEALERLEKGDVRYRFVLD 337 (337)
T ss_pred EHHHHHHHHHHHHcCCCcceEeeC
Confidence 999999999999999999999874
No 37
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=99.16 E-value=3.2e-10 Score=79.92 Aligned_cols=95 Identities=11% Similarity=0.078 Sum_probs=70.5
Q ss_pred HHHHHHhhccC-CeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceee--eee
Q 033914 2 LDAVRLNMRIR-GRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVY--VED 78 (109)
Q Consensus 2 ~~~~l~~l~~~-Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~--~~~ 78 (109)
++.++++++++ |+++.+|..++.+ .+++...++. ++++.|++.+.+. .+..+.++++++++|+++. .++
T Consensus 268 ~~~~~~~l~~~~G~~v~~g~~~~~~-----~~~~~~~~~~-~~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~ 339 (365)
T cd08277 268 MNEALESTKLGWGVSVVVGVPPGAE-----LSIRPFQLIL-GRTWKGSFFGGFK--SRSDVPKLVSKYMNKKFDLDELIT 339 (365)
T ss_pred HHHHHHhcccCCCEEEEEcCCCccc-----cccCHhHHhh-CCEEEeeecCCCC--hHHHHHHHHHHHHCCCcChhHhee
Confidence 45788899885 9999999865311 1233444553 8999999876653 2345788999999998764 466
Q ss_pred eecccchHHHHHHHhhcCCCcceEEEE
Q 033914 79 IAEGLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 79 ~~~~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
.+++|+|+++||+.+++++ ..|+++.
T Consensus 340 ~~~~l~~~~~A~~~~~~~~-~~k~~i~ 365 (365)
T cd08277 340 HVLPFEEINKGFDLMKSGE-CIRTVIT 365 (365)
T ss_pred eEEchhhHHHHHHHHHCCC-CceEeeC
Confidence 6789999999999999887 5798873
No 38
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=99.14 E-value=1.1e-10 Score=81.13 Aligned_cols=96 Identities=15% Similarity=0.100 Sum_probs=73.2
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeee-
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIA- 80 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~- 80 (109)
+++++++..++|+.+++|...-. ...+.++.+++.. .+++|++.+.-.. +.++.++++|+.+|+|.....++
T Consensus 268 ~~~al~~~~~~G~~v~iGv~~~~----~~i~~~~~~lv~g-r~~~Gs~~G~~~p--~~diP~lv~~y~~Gkl~~d~lvt~ 340 (366)
T COG1062 268 MRQALEATHRGGTSVIIGVAGAG----QEISTRPFQLVTG-RVWKGSAFGGARP--RSDIPRLVDLYMAGKLPLDRLVTH 340 (366)
T ss_pred HHHHHHHHhcCCeEEEEecCCCC----ceeecChHHeecc-ceEEEEeecCCcc--ccchhHHHHHHHcCCCchhHHhhc
Confidence 67899999999999999985531 1223445556655 8999998875432 24677888899999999876544
Q ss_pred -cccchHHHHHHHhhcCCCcceEEEE
Q 033914 81 -EGLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 81 -~~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
++|||+++||++|++|+.. |-||.
T Consensus 341 ~~~Le~INeaf~~m~~G~~I-R~Vi~ 365 (366)
T COG1062 341 TIPLEDINEAFDLMHEGKSI-RSVIR 365 (366)
T ss_pred cccHHHHHHHHHHHhCCcee-eEEec
Confidence 6999999999999999864 66654
No 39
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=99.14 E-value=4.8e-10 Score=79.14 Aligned_cols=96 Identities=14% Similarity=0.097 Sum_probs=69.2
Q ss_pred HHHHHHhhccC-CeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee--ee
Q 033914 2 LDAVRLNMRIR-GRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV--ED 78 (109)
Q Consensus 2 ~~~~l~~l~~~-Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~--~~ 78 (109)
+++++++++++ ||++.+|..++. .. ...+...++ +..++.|++.+.+. .++.+.++++++++|++++. ++
T Consensus 270 ~~~a~~~l~~~~G~~v~~g~~~~~---~~-~~~~~~~~~-~~~~~~g~~~~~~~--~~~~~~~~~~~~~~g~l~~~~~i~ 342 (368)
T cd08300 270 MRAALEACHKGWGTSVIIGVAAAG---QE-ISTRPFQLV-TGRVWKGTAFGGWK--SRSQVPKLVEDYMKGKIKVDEFIT 342 (368)
T ss_pred HHHHHHhhccCCCeEEEEccCCCC---Cc-cccCHHHHh-hcCeEEEEEecccC--cHHHHHHHHHHHHcCCCChhhcee
Confidence 46788999997 999999986421 01 122222333 34578888765543 24567889999999999864 56
Q ss_pred eecccchHHHHHHHhhcCCCcceEEEE
Q 033914 79 IAEGLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 79 ~~~~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
.+++|||+++||+.+++++. .|++++
T Consensus 343 ~~~~le~~~~A~~~~~~~~~-~k~~~~ 368 (368)
T cd08300 343 HTMPLDEINEAFDLMHAGKS-IRTVVK 368 (368)
T ss_pred eeEcHHHHHHHHHHHhCCCC-ceeeeC
Confidence 67899999999999998874 699874
No 40
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.14 E-value=6.3e-10 Score=77.48 Aligned_cols=95 Identities=21% Similarity=0.216 Sum_probs=77.0
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
++.++++++++|+++.+|...+. ...+++..++.+++++.|+.... .+.+.++++++.+|++++.+..++
T Consensus 256 ~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~l~~~~~~~~ 325 (350)
T cd08274 256 FPDLLRLLRPGGRYVTAGAIAGP-----VVELDLRTLYLKDLTLFGSTLGT-----REVFRRLVRYIEEGEIRPVVAKTF 325 (350)
T ss_pred HHHHHHHhccCCEEEEecccCCc-----cccCCHHHhhhcceEEEEeecCC-----HHHHHHHHHHHHCCCccccccccc
Confidence 46788999999999999975431 12355667788999999987532 456888999999999988766778
Q ss_pred ccchHHHHHHHhhcCCCcceEEEEe
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
+++++.+|++.+.++...||+|+.+
T Consensus 326 ~~~~~~~a~~~~~~~~~~~kvvi~~ 350 (350)
T cd08274 326 PLSEIREAQAEFLEKRHVGKLVLVP 350 (350)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEeC
Confidence 9999999999999988899999864
No 41
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.13 E-value=4.4e-10 Score=77.57 Aligned_cols=103 Identities=46% Similarity=0.802 Sum_probs=77.4
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
++.++++++++|+++.+|..+...........+...++.+++++.|+....+.....+.+.++++++.+|.+++....++
T Consensus 227 ~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ 306 (329)
T cd05288 227 LDAALTLLNKGGRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYREDVVE 306 (329)
T ss_pred HHHHHHhcCCCceEEEEeeccCcccccccccccHHHHhhCcceEEeecchhhHHHHHHHHHHHHHHHHCCCccccccccc
Confidence 46788999999999999976543110000012345667899999998764443334567888999999999998766778
Q ss_pred ccchHHHHHHHhhcCCCcceEEE
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLV 104 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv 104 (109)
+|+++++|++.+.+++..||+++
T Consensus 307 ~l~~~~~a~~~~~~~~~~gkvvv 329 (329)
T cd05288 307 GLENAPEAFLGLFTGKNTGKLVV 329 (329)
T ss_pred cHHHHHHHHHHHhcCCCccceeC
Confidence 99999999999999888899874
No 42
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.11 E-value=6.3e-10 Score=76.60 Aligned_cols=99 Identities=15% Similarity=0.172 Sum_probs=76.3
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeeccccc-----chHHHHHHHHHHHHcCceeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYH-----QYPKFLELVMRAIKEGKLVYV 76 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~-----~~~~~~~~~~~~~~~G~l~~~ 76 (109)
+..++++++++||++.+|...+. . ..+++..++.+++++.++....+.. ...+.+.++++++.+|.+++.
T Consensus 221 ~~~~~~~l~~~g~~v~~g~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~ 295 (324)
T cd08292 221 AGELLSLLGEGGTLVSFGSMSGE----P-MQISSGDLIFKQATVRGFWGGRWSQEMSVEYRKRMIAELLTLALKGQLLLP 295 (324)
T ss_pred HHHHHHhhcCCcEEEEEecCCCC----C-CcCCHHHHhhCCCEEEEEEcHHhhhhcCHHHHHHHHHHHHHHHHCCCccCc
Confidence 35678999999999999975321 1 1344555678999999988654321 124568889999999999866
Q ss_pred eeeecccchHHHHHHHhhcCCCcceEEEE
Q 033914 77 EDIAEGLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 77 ~~~~~~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
+..+++++++.+||+.+.++...||++++
T Consensus 296 ~~~~~~~~~~~~a~~~~~~~~~~~kvvv~ 324 (324)
T cd08292 296 VEAVFDLGDAAKAAAASMRPGRAGKVLLR 324 (324)
T ss_pred cccEecHHHHHHHHHHHHcCCCCceEEeC
Confidence 66678999999999999988889999873
No 43
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=99.11 E-value=1.1e-09 Score=77.74 Aligned_cols=95 Identities=15% Similarity=0.199 Sum_probs=76.2
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
++.++++++++|+++.+|...+.. ..++...++.++.++.|++... .+.+.++++++++|.+.+.+..++
T Consensus 298 ~~~~~~~l~~~G~~v~~g~~~~~~-----~~~~~~~l~~~~~~i~g~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~ 367 (393)
T cd08246 298 FPTSVFVCDRGGMVVICAGTTGYN-----HTYDNRYLWMRQKRIQGSHFAN-----DREAAEANRLVMKGRIDPCLSKVF 367 (393)
T ss_pred HHHHHHHhccCCEEEEEcccCCCC-----CCCcHHHHhhheeEEEecccCc-----HHHHHHHHHHHHcCCceeeeeEEE
Confidence 467889999999999999755321 1345566788999999986543 346778899999999998766678
Q ss_pred ccchHHHHHHHhhcC-CCcceEEEEe
Q 033914 82 GLEKAPSALVGIFTG-QNVGKQLVVI 106 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g-~~~GKvvv~~ 106 (109)
+++++++||+.+.++ +..||+++.+
T Consensus 368 ~l~~~~~a~~~~~~~~~~~gkvvv~~ 393 (393)
T cd08246 368 SLDETPDAHQLMHRNQHHVGNMAVLV 393 (393)
T ss_pred eHHHHHHHHHHHHhCccccceEEEeC
Confidence 999999999999999 7899999753
No 44
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=99.10 E-value=4.9e-10 Score=80.04 Aligned_cols=100 Identities=15% Similarity=0.092 Sum_probs=68.3
Q ss_pred HHHHHHhhccCCeEEEEccccccC-CCCC------ccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCcee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYN-LEKS------EGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLV 74 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~-~~~~------~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~ 74 (109)
+++++++++++|+++++|...... .... ...+....++.+++++.|... . ..+...++++++++|+++
T Consensus 282 ~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~~--~---~~~~~~~~~~~~~~g~i~ 356 (393)
T TIGR02819 282 LNSLMEVTRVGGAIGIPGLYVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSFHTGQT--P---VMKYNRNLMQAILHDRVQ 356 (393)
T ss_pred HHHHHHHhhCCCEEEEeeecCCcccccccccccccccccchHHhhccCceEEeccC--C---hhhhHHHHHHHHHcCCCC
Confidence 678999999999999999863211 0000 011223345567777776321 1 112346789999999998
Q ss_pred ee--ee-eecccchHHHHHHHhhcCCCcceEEEEee
Q 033914 75 YV--ED-IAEGLEKAPSALVGIFTGQNVGKQLVVIA 107 (109)
Q Consensus 75 ~~--~~-~~~~l~~~~~A~~~l~~g~~~GKvvv~~~ 107 (109)
+. +. .++||+|+++||+.+.+++ .+|+++.+.
T Consensus 357 ~~~~i~~~~~~l~~~~~a~~~~~~~~-~~Kvvi~~~ 391 (393)
T TIGR02819 357 IAKAVNVTVISLDDAPEGYAEFDAGA-AKKFVIDPH 391 (393)
T ss_pred HHHceecceecHHHHHHHHHHHhhCC-ceEEEEeCC
Confidence 64 33 4589999999999998875 599999763
No 45
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=99.09 E-value=8.2e-10 Score=77.50 Aligned_cols=95 Identities=17% Similarity=0.120 Sum_probs=70.2
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcC--ce--eeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEG--KL--VYVE 77 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G--~l--~~~~ 77 (109)
++.++++++++|+++.+|..+.. ....++...++.+++++.|++.++ ++.+.++++++.++ .+ .+.+
T Consensus 263 ~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i 333 (361)
T cd08231 263 VPEGLELLRRGGTYVLVGSVAPA----GTVPLDPERIVRKNLTIIGVHNYD-----PSHLYRAVRFLERTQDRFPFAELV 333 (361)
T ss_pred HHHHHHHhccCCEEEEEcCCCCC----CccccCHHHHhhcccEEEEcccCC-----chhHHHHHHHHHhccCcCCchhhe
Confidence 45788999999999999975421 111344456788999999987543 34567777788777 43 3455
Q ss_pred eeecccchHHHHHHHhhcCCCcceEEEEe
Q 033914 78 DIAEGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 78 ~~~~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
..+++|+|+++||+.++++. .+|+||++
T Consensus 334 ~~~~~l~~~~~a~~~~~~~~-~~k~vi~~ 361 (361)
T cd08231 334 THRYPLEDINEALELAESGT-ALKVVIDP 361 (361)
T ss_pred eeeeeHHHHHHHHHHHHcCC-ceEEEeCC
Confidence 66789999999999998887 48999864
No 46
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=99.07 E-value=2.5e-09 Score=74.10 Aligned_cols=96 Identities=21% Similarity=0.248 Sum_probs=74.6
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
+.+++++++++|+++.+|..+.. ...+.++...+.+++++.+++.. .++.+.++++++++|.+++.+..++
T Consensus 238 ~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (334)
T PRK13771 238 LEESLRSLNMGGKIIQIGNVDPS----PTYSLRLGYIILKDIEIIGHISA-----TKRDVEEALKLVAEGKIKPVIGAEV 308 (334)
T ss_pred HHHHHHHHhcCCEEEEEeccCCC----CCcccCHHHHHhcccEEEEecCC-----CHHHHHHHHHHHHcCCCcceEeeeE
Confidence 45788999999999999975431 11012334456788999987532 2457888999999999987776778
Q ss_pred ccchHHHHHHHhhcCCCcceEEEEe
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
+++++.+||+.+.++...||+++.+
T Consensus 309 ~~~~~~~a~~~~~~~~~~~kvv~~~ 333 (334)
T PRK13771 309 SLSEIDKALEELKDKSRIGKILVKP 333 (334)
T ss_pred cHHHHHHHHHHHHcCCCcceEEEec
Confidence 9999999999999988899999875
No 47
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.05 E-value=2.3e-09 Score=74.92 Aligned_cols=93 Identities=17% Similarity=0.204 Sum_probs=74.7
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
++.++++++++|+++.+|..++. ...++..+..+++++.+++... ++.+.++++++++|.+++....++
T Consensus 257 ~~~~~~~l~~~g~~v~~g~~~~~------~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~ll~~~~i~~~~~~~~ 325 (350)
T cd08240 257 ASLAFDILAKGGKLVLVGLFGGE------ATLPLPLLPLRALTIQGSYVGS-----LEELRELVALAKAGKLKPIPLTER 325 (350)
T ss_pred HHHHHHHhhcCCeEEEECCCCCC------CcccHHHHhhcCcEEEEcccCC-----HHHHHHHHHHHHcCCCccceeeEE
Confidence 46788999999999999976542 1233445566999999887543 356788899999999987766678
Q ss_pred ccchHHHHHHHhhcCCCcceEEEE
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
+++++.+||+.+.+++..||+++.
T Consensus 326 ~~~~~~~a~~~~~~~~~~gkvvv~ 349 (350)
T cd08240 326 PLSDVNDALDDLKAGKVVGRAVLK 349 (350)
T ss_pred cHHHHHHHHHHHHcCCccceEEec
Confidence 999999999999999889999985
No 48
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.05 E-value=3.3e-09 Score=73.16 Aligned_cols=99 Identities=19% Similarity=0.257 Sum_probs=74.0
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccc-cchHHHHHHHHHHHHcCceeeeeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFY-HQYPKFLELVMRAIKEGKLVYVEDIA 80 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~-~~~~~~~~~~~~~~~~G~l~~~~~~~ 80 (109)
+++++++++++||++.+|..++. + ...++..++.+++++.|+...... ....+.+.++.+++..|.+++.. .+
T Consensus 224 ~~~~~~~l~~~G~~v~~g~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 297 (323)
T TIGR02823 224 LANVLAQLKYGGAVAACGLAGGP----D-LPTTVLPFILRGVSLLGIDSVYCPMALREAAWQRLATDLKPRNLESIT-RE 297 (323)
T ss_pred HHHHHHHhCCCCEEEEEcccCCC----C-ccccHHHHhhcceEEEEEeccccCchhHHHHHHHHHHHhhcCCCcCce-ee
Confidence 46788999999999999976431 1 123345566899999997653221 22334567788888899887654 36
Q ss_pred cccchHHHHHHHhhcCCCcceEEEEe
Q 033914 81 EGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 81 ~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
++++++++||+.+.+++..||+|+++
T Consensus 298 ~~l~~~~~a~~~~~~~~~~~k~vv~~ 323 (323)
T TIGR02823 298 ITLEELPEALEQILAGQHRGRTVVDV 323 (323)
T ss_pred ecHHHHHHHHHHHhCCCccceEEEeC
Confidence 89999999999999999999999864
No 49
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.04 E-value=2.7e-09 Score=74.06 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=74.6
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
++.++++++.+|+++.+|..... ..++...+..++.++.|++.+. ++.+.++++++++|.+++.+. ++
T Consensus 244 ~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~g~l~~~v~-~~ 311 (338)
T PRK09422 244 FNQAVDAVRAGGRVVAVGLPPES------MDLSIPRLVLDGIEVVGSLVGT-----RQDLEEAFQFGAEGKVVPKVQ-LR 311 (338)
T ss_pred HHHHHHhccCCCEEEEEeeCCCC------ceecHHHHhhcCcEEEEecCCC-----HHHHHHHHHHHHhCCCCccEE-EE
Confidence 46789999999999999975431 1345566777899998876432 356788999999999987655 47
Q ss_pred ccchHHHHHHHhhcCCCcceEEEEee
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVVIA 107 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~~~ 107 (109)
+++++++||+.+.++...||+++...
T Consensus 312 ~~~~~~~a~~~~~~~~~~gkvvv~~~ 337 (338)
T PRK09422 312 PLEDINDIFDEMEQGKIQGRMVIDFT 337 (338)
T ss_pred cHHHHHHHHHHHHcCCccceEEEecC
Confidence 99999999999999999999998653
No 50
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.03 E-value=3.7e-09 Score=75.36 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=76.9
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
+..++++++++|+++.+|..++.+ ...+...++.++.++.|+....+ ..+++++++++++++++.+..++
T Consensus 293 ~~~~~~~l~~~G~~v~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~ 362 (398)
T TIGR01751 293 FPTSVFVCRRGGMVVICGGTTGYN-----HDYDNRYLWMRQKRIQGSHFANL-----REAWEANRLVAKGRIDPTLSKVY 362 (398)
T ss_pred HHHHHHhhccCCEEEEEccccCCC-----CCcCHHHHhhcccEEEccccCcH-----HHHHHHHHHHHCCCcccceeeEE
Confidence 457889999999999999865431 13445667788888988765432 24678899999999998777778
Q ss_pred ccchHHHHHHHhhcCCCcceEEEEee
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVVIA 107 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~~~ 107 (109)
+++++++||+.+.+++..||+|+++.
T Consensus 363 ~l~~~~~a~~~~~~~~~~gkvvv~~~ 388 (398)
T TIGR01751 363 PLEEIGQAHQDVHRNHHQGNVAVLVL 388 (398)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEEeC
Confidence 99999999999999999999999874
No 51
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=99.02 E-value=3.6e-09 Score=74.75 Aligned_cols=96 Identities=14% Similarity=0.077 Sum_probs=67.6
Q ss_pred HHHHHHhhccC-CeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceee--eee
Q 033914 2 LDAVRLNMRIR-GRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVY--VED 78 (109)
Q Consensus 2 ~~~~l~~l~~~-Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~--~~~ 78 (109)
+++++++++++ |+++.+|...+. .. .+++...++ ++..+.|++.+... .+..+.++++++++|++++ .++
T Consensus 269 ~~~~~~~~~~~~G~~v~~g~~~~~---~~-~~~~~~~~~-~~~~~~g~~~~~~~--~~~~~~~~~~~~~~g~i~~~~~it 341 (368)
T TIGR02818 269 MRAALECCHKGWGESIIIGVAGAG---QE-ISTRPFQLV-TGRVWRGSAFGGVK--GRTELPGIVEQYMKGEIALDDFVT 341 (368)
T ss_pred HHHHHHHhhcCCCeEEEEeccCCC---Cc-ccccHHHHh-ccceEEEeeccCCC--cHHHHHHHHHHHHCCCCCchhhee
Confidence 46788999886 999999985421 01 122233333 34467887654321 2346888999999999875 356
Q ss_pred eecccchHHHHHHHhhcCCCcceEEEE
Q 033914 79 IAEGLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 79 ~~~~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
.++||||+++||+.+++++. +|++++
T Consensus 342 ~~~~l~~~~~A~~~~~~~~~-~k~~v~ 367 (368)
T TIGR02818 342 HTMPLEDINEAFDLMHEGKS-IRTVIH 367 (368)
T ss_pred EEecHHHHHHHHHHHhCCCc-eeEEee
Confidence 67899999999999988764 799886
No 52
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=99.02 E-value=2.3e-09 Score=84.15 Aligned_cols=102 Identities=18% Similarity=0.207 Sum_probs=77.6
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHH----HHcCceeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRA----IKEGKLVYVE 77 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~----~~~G~l~~~~ 77 (109)
++++++||+.+||+..+|-..=.+ + .|.. +..+.|+.+++|+.+.+..+..-+.+.++..+ +++|.++|..
T Consensus 1638 LQASiRCLa~~GRFLEIGKfDLSq-N---spLG-MavfLkNvsfHGiLLDsvmege~e~~~ev~~Lv~eGIksGvV~PL~ 1712 (2376)
T KOG1202|consen 1638 LQASIRCLALHGRFLEIGKFDLSQ-N---SPLG-MAVFLKNVSFHGILLDSVMEGEEEMWREVAALVAEGIKSGVVRPLP 1712 (2376)
T ss_pred HHHHHHHHHhcCeeeeecceeccc-C---Ccch-hhhhhcccceeeeehhhhhcCcHHHHHHHHHHHHhhhccCceeccc
Confidence 678999999999999999643211 1 1232 35788999999999876654333445555544 5567788888
Q ss_pred eeecccchHHHHHHHhhcCCCcceEEEEeec
Q 033914 78 DIAEGLEKAPSALVGIFTGQNVGKQLVVIAR 108 (109)
Q Consensus 78 ~~~~~l~~~~~A~~~l~~g~~~GKvvv~~~~ 108 (109)
...|+=+++++||+.|.+|+++||||+++-.
T Consensus 1713 ttvF~~~qvE~AFRfMasGKHIGKVvikvr~ 1743 (2376)
T KOG1202|consen 1713 TTVFHGQQVEDAFRFMASGKHIGKVVIKVRA 1743 (2376)
T ss_pred cccccHHHHHHHHHHHhccCccceEEEEEcc
Confidence 8788999999999999999999999999843
No 53
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.01 E-value=4.6e-09 Score=72.23 Aligned_cols=99 Identities=19% Similarity=0.135 Sum_probs=77.4
Q ss_pred HHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccc-cchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 3 DAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFY-HQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~-~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
+.++++++++|+++.+|..... . ..++...++.+++++.++...... ....+.+.+++++++++.+++.+..++
T Consensus 225 ~~~~~~l~~~g~~v~~g~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 299 (324)
T cd08244 225 RAALALLAPGGRFLTYGWASGE----W-TALDEDDARRRGVTVVGLLGVQAERGGLRALEARALAEAAAGRLVPVVGQTF 299 (324)
T ss_pred HHHHHHhccCcEEEEEecCCCC----C-CccCHHHHhhCCcEEEEeecccCCHHHHHHHHHHHHHHHHCCCccCccceEE
Confidence 5678999999999999976542 1 134444567899999998764322 234567888899999999987766778
Q ss_pred ccchHHHHHHHhhcCCCcceEEEEe
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
+++++++|++.+.+++..||+++++
T Consensus 300 ~~~~~~~a~~~~~~~~~~~kvv~~~ 324 (324)
T cd08244 300 PLERAAEAHAALEARSTVGKVLLLP 324 (324)
T ss_pred eHHHHHHHHHHHHcCCCCceEEEeC
Confidence 9999999999999999999999864
No 54
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=99.01 E-value=2.3e-09 Score=73.28 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=77.4
Q ss_pred HHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeeccccc------chHHHHHHHHHHHHcCceeeee
Q 033914 4 AVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYH------QYPKFLELVMRAIKEGKLVYVE 77 (109)
Q Consensus 4 ~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~------~~~~~~~~~~~~~~~G~l~~~~ 77 (109)
...+.|.+||++|.||.+|.. | ...+...+++|+++++|||+..|.. ++-+.+.++.+|+++|+|+...
T Consensus 248 ~iar~L~~GgtmvTYGGMSkq----P-v~~~ts~lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~~ 322 (354)
T KOG0025|consen 248 EIARYLERGGTMVTYGGMSKQ----P-VTVPTSLLIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAPN 322 (354)
T ss_pred HHHHHHhcCceEEEecCccCC----C-cccccchheeccceeeeeeeeehhhccCCcHHHHHHHHHHHHHHHcCeecccc
Confidence 456789999999999998874 2 2355677999999999999988853 2346678899999999999877
Q ss_pred eeecccchHHHHHHHhhcC-CCcceEEEEe
Q 033914 78 DIAEGLEKAPSALVGIFTG-QNVGKQLVVI 106 (109)
Q Consensus 78 ~~~~~l~~~~~A~~~l~~g-~~~GKvvv~~ 106 (109)
....+|++-..|++...+. ...||-++.+
T Consensus 323 ~e~v~L~~~~tald~~L~~~~~~~Kq~i~~ 352 (354)
T KOG0025|consen 323 CEKVPLADHKTALDAALSKFGKSGKQIIVL 352 (354)
T ss_pred ceeeechhhhHHHHHHHHHhccCCceEEEe
Confidence 6556999999999887654 3357877765
No 55
>PRK10083 putative oxidoreductase; Provisional
Probab=99.00 E-value=5e-09 Score=72.82 Aligned_cols=95 Identities=15% Similarity=0.095 Sum_probs=71.9
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee--eee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV--EDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~--~~~ 79 (109)
+..++++++++|+++.+|..+.. .+++...+..+++++.+.... .+.++++++++++|++++. +..
T Consensus 242 ~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~l~~~~~~~~ 309 (339)
T PRK10083 242 LEEAVTLASPAARIVLMGFSSEP------SEIVQQGITGKELSIFSSRLN------ANKFPVVIDWLSKGLIDPEKLITH 309 (339)
T ss_pred HHHHHHHhhcCCEEEEEccCCCC------ceecHHHHhhcceEEEEEecC------hhhHHHHHHHHHcCCCChHHheee
Confidence 46788999999999999975431 123344455688888876531 3468889999999999974 566
Q ss_pred ecccchHHHHHHHhhcCC-CcceEEEEeec
Q 033914 80 AEGLEKAPSALVGIFTGQ-NVGKQLVVIAR 108 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~-~~GKvvv~~~~ 108 (109)
+++++++++||+.++++. ..||+++.+++
T Consensus 310 ~~~l~~~~~a~~~~~~~~~~~~kvvv~~~~ 339 (339)
T PRK10083 310 TFDFQHVADAIELFEKDQRHCCKVLLTFAE 339 (339)
T ss_pred eecHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 789999999999998654 57999997653
No 56
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.00 E-value=4.5e-09 Score=72.28 Aligned_cols=99 Identities=16% Similarity=0.224 Sum_probs=72.9
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccc-cchHHHHHHHHHHHHcCceeeeeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFY-HQYPKFLELVMRAIKEGKLVYVEDIA 80 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~-~~~~~~~~~~~~~~~~G~l~~~~~~~ 80 (109)
+++++++++++|+++.+|.....+ ...++..++.+++++.++...... ....+.++.+.+++..+... .+..+
T Consensus 226 ~~~~~~~l~~~g~~v~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 299 (325)
T cd05280 226 LANLLKQTKYGGVVASCGNAAGPE-----LTTTVLPFILRGVSLLGIDSVNCPMELRKQVWQKLATEWKPDLLE-IVVRE 299 (325)
T ss_pred HHHHHHhhcCCCEEEEEecCCCCc-----cccccchheeeeeEEEEEEeecCchhHHHHHHHHHHHHHhcCCcc-ceeeE
Confidence 467899999999999999754321 123344556899999998764332 12335566777777777444 46667
Q ss_pred cccchHHHHHHHhhcCCCcceEEEEe
Q 033914 81 EGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 81 ~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
++++++++|++.+.+++..||+|+++
T Consensus 300 ~~~~~~~~a~~~~~~~~~~gk~vv~~ 325 (325)
T cd05280 300 ISLEELPEAIDRLLAGKHRGRTVVKI 325 (325)
T ss_pred ecHHHHHHHHHHHhcCCcceEEEEeC
Confidence 89999999999999999999999864
No 57
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=98.99 E-value=5.8e-09 Score=72.10 Aligned_cols=93 Identities=24% Similarity=0.376 Sum_probs=75.0
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
++.++++|+++|+++.+|..... ...+...++.++.++.|++... ++.+.++++++++|.|++. ...+
T Consensus 246 ~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~~~l~~~-~~~~ 313 (338)
T cd08254 246 FEDAQKAVKPGGRIVVVGLGRDK------LTVDLSDLIARELRIIGSFGGT-----PEDLPEVLDLIAKGKLDPQ-VETR 313 (338)
T ss_pred HHHHHHHhhcCCEEEEECCCCCC------CccCHHHHhhCccEEEEeccCC-----HHHHHHHHHHHHcCCCccc-ceeE
Confidence 45788999999999999975431 1244567788999999876432 4578889999999999876 4467
Q ss_pred ccchHHHHHHHhhcCCCcceEEEEe
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
+++++.+|++.+.+++..||+|+++
T Consensus 314 ~~~~~~~a~~~~~~~~~~~kvv~~~ 338 (338)
T cd08254 314 PLDEIPEVLERLHKGKVKGRVVLVP 338 (338)
T ss_pred cHHHHHHHHHHHHcCCccceEEEeC
Confidence 9999999999999999999999875
No 58
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=98.98 E-value=8.2e-09 Score=71.79 Aligned_cols=94 Identities=17% Similarity=0.138 Sum_probs=74.3
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
++.++++++++|+++.+|..+.. ..+++...++.+++++.++..+. .+.+.++++++++|.+++.+ ..+
T Consensus 248 ~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~-~~~ 316 (341)
T cd08297 248 YEQALDYLRPGGTLVCVGLPPGG-----FIPLDPFDLVLRGITIVGSLVGT-----RQDLQEALEFAARGKVKPHI-QVV 316 (341)
T ss_pred HHHHHHHhhcCCEEEEecCCCCC-----CCCCCHHHHHhcccEEEEeccCC-----HHHHHHHHHHHHcCCCccee-EEE
Confidence 45678999999999999975431 12345566778999999876432 45788899999999998755 457
Q ss_pred ccchHHHHHHHhhcCCCcceEEEEe
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
+++++++||+.+..+...||++++.
T Consensus 317 ~~~~~~~a~~~~~~~~~~gkvvi~~ 341 (341)
T cd08297 317 PLEDLNEVFEKMEEGKIAGRVVVDF 341 (341)
T ss_pred cHHHHHHHHHHHHcCCccceEEEeC
Confidence 9999999999999999999999863
No 59
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=98.97 E-value=5.3e-09 Score=72.12 Aligned_cols=100 Identities=16% Similarity=0.239 Sum_probs=67.9
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeeccc-ccchHHHHHHHHHHHHcCceeeeeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDF-YHQYPKFLELVMRAIKEGKLVYVEDIA 80 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~-~~~~~~~~~~~~~~~~~G~l~~~~~~~ 80 (109)
++.++++++++|+++.+|..+.. + ...++..++.+++++.|+..... .....+.+..+.+.+..+.+...+..+
T Consensus 226 ~~~~~~~l~~~G~~i~~g~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (326)
T cd08289 226 LAYLLSTLQYGGSVAVSGLTGGG----E-VETTVFPFILRGVNLLGIDSVECPMELRRRIWRRLATDLKPTQLLNEIKQE 300 (326)
T ss_pred HHHHHHHhhcCCEEEEEeecCCC----C-CCcchhhhhhccceEEEEEeEecCchHHHHHHHHHHhhcCccccccccceE
Confidence 46788999999999999986432 1 12334556789999999864221 112233444444444323233344666
Q ss_pred cccchHHHHHHHhhcCCCcceEEEEe
Q 033914 81 EGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 81 ~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
++++++.+||+.+.+++..||+|+++
T Consensus 301 ~~l~~~~~a~~~~~~~~~~gkvvv~~ 326 (326)
T cd08289 301 ITLDELPEALKQILQGRVTGRTVVKL 326 (326)
T ss_pred eeHHHHHHHHHHHhcCcccceEEEeC
Confidence 89999999999999999999999864
No 60
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=98.97 E-value=7.4e-09 Score=71.91 Aligned_cols=92 Identities=23% Similarity=0.175 Sum_probs=72.3
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
++.++++++++|+++.+|..+.. .++...++.+++++.++.... .+.+.++++++++|.+++.+. ++
T Consensus 249 ~~~~~~~l~~~g~~i~~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~g~l~~~~~-~~ 315 (340)
T cd05284 249 LALAAKLLAKGGRYVIVGYGGHG-------RLPTSDLVPTEISVIGSLWGT-----RAELVEVVALAESGKVKVEIT-KF 315 (340)
T ss_pred HHHHHHHhhcCCEEEEEcCCCCC-------ccCHHHhhhcceEEEEEeccc-----HHHHHHHHHHHHhCCCCcceE-EE
Confidence 45678999999999999975421 233344568999999986532 346788899999999987544 57
Q ss_pred ccchHHHHHHHhhcCCCcceEEEEe
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
+++++++|++.+.+++..||+++.+
T Consensus 316 ~~~~~~~a~~~~~~~~~~gkvv~~~ 340 (340)
T cd05284 316 PLEDANEALDRLREGRVTGRAVLVP 340 (340)
T ss_pred eHHHHHHHHHHHHcCCccceEEecC
Confidence 9999999999999999999999864
No 61
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=98.96 E-value=1.2e-08 Score=70.28 Aligned_cols=95 Identities=23% Similarity=0.302 Sum_probs=75.1
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
++.++++++++|+++.+|..+... ...+....+.+++++.++.... ...+.++++++++|.+++.+..++
T Consensus 248 ~~~~~~~l~~~G~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~ 317 (342)
T cd08266 248 WEKSLKSLARGGRLVTCGATTGYE-----APIDLRHVFWRQLSILGSTMGT-----KAELDEALRLVFRGKLKPVIDSVF 317 (342)
T ss_pred HHHHHHHhhcCCEEEEEecCCCCC-----CCcCHHHHhhcceEEEEEecCC-----HHHHHHHHHHHHcCCcccceeeeE
Confidence 466789999999999999765421 1234445678899999886532 346788899999999988776778
Q ss_pred ccchHHHHHHHhhcCCCcceEEEEe
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
+++++++|++.+.++...||+++++
T Consensus 318 ~~~~~~~a~~~~~~~~~~~kvv~~~ 342 (342)
T cd08266 318 PLEEAAEAHRRLESREQFGKIVLTP 342 (342)
T ss_pred cHHHHHHHHHHHHhCCCCceEEEeC
Confidence 9999999999999888899999864
No 62
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.95 E-value=1.2e-08 Score=70.25 Aligned_cols=95 Identities=22% Similarity=0.287 Sum_probs=76.1
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
+..++++++++|+++.+|..+... ...+...++.+++++.++..+. .+.+.++.++++++.+.+....++
T Consensus 242 ~~~~~~~l~~~G~~v~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~l~~~~~~~~ 311 (336)
T cd08276 242 LAQSIKAVAPGGVISLIGFLSGFE-----APVLLLPLLTKGATLRGIAVGS-----RAQFEAMNRAIEAHRIRPVIDRVF 311 (336)
T ss_pred HHHHHHhhcCCCEEEEEccCCCCc-----cCcCHHHHhhcceEEEEEecCc-----HHHHHHHHHHHHcCCcccccCcEE
Confidence 456789999999999999866531 1234556788999999987643 346788889999999987666668
Q ss_pred ccchHHHHHHHhhcCCCcceEEEEe
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
+++++++|++.+.++...||+++++
T Consensus 312 ~~~~~~~a~~~~~~~~~~~kvv~~~ 336 (336)
T cd08276 312 PFEEAKEAYRYLESGSHFGKVVIRV 336 (336)
T ss_pred eHHHHHHHHHHHHhCCCCceEEEeC
Confidence 9999999999999988899999864
No 63
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=98.93 E-value=9.4e-09 Score=73.07 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=72.9
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee--eee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV--EDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~--~~~ 79 (109)
++.++++++++|+++.+|..+.. . ...+...++.+++++.++... ..+.+.++++++++|++++. +..
T Consensus 289 ~~~~~~~l~~~G~iv~~g~~~~~---~--~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~l~~g~l~~~~~~~~ 358 (386)
T cd08283 289 LREAIQAVRKGGTVSIIGVYGGT---V--NKFPIGAAMNKGLTLRMGQTH-----VQRYLPRLLELIESGELDPSFIITH 358 (386)
T ss_pred HHHHHHHhccCCEEEEEcCCCCC---c--CccCHHHHHhCCcEEEeccCC-----chHHHHHHHHHHHcCCCChhHceEE
Confidence 45688999999999999976542 1 124455678899999987531 24568889999999999874 445
Q ss_pred ecccchHHHHHHHhhcCC-CcceEEEEe
Q 033914 80 AEGLEKAPSALVGIFTGQ-NVGKQLVVI 106 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~-~~GKvvv~~ 106 (109)
+++++++.+||+.+.++. ..||+|+++
T Consensus 359 ~~~l~~~~~a~~~~~~~~~~~~k~~~~~ 386 (386)
T cd08283 359 RLPLEDAPEAYKIFDKKEDGCIKVVLKP 386 (386)
T ss_pred EecHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 689999999999998876 468999864
No 64
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.93 E-value=7.6e-09 Score=72.37 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=68.9
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccch--HHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceee---e
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNL--MQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVY---V 76 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~--~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~---~ 76 (109)
+..++++++++|+++.+|..+... . ..++. .....+..++.+.+... .++.+.++++++++|+|++ .
T Consensus 249 ~~~~~~~l~~~G~~v~~g~~~~~~---~-~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~g~i~~~~~~ 320 (351)
T cd08285 249 FEQALKVLKPGGTISNVNYYGEDD---Y-LPIPREEWGVGMGHKTINGGLCPG----GRLRMERLASLIEYGRVDPSKLL 320 (351)
T ss_pred HHHHHHHhhcCCEEEEecccCCCc---e-eecChhhhhhhccccEEEEeecCC----ccccHHHHHHHHHcCCCChhhce
Confidence 467889999999999999765421 1 11221 12335667777654322 1356788899999999998 3
Q ss_pred eeeecccchHHHHHHHhhcCCC-cceEEEEe
Q 033914 77 EDIAEGLEKAPSALVGIFTGQN-VGKQLVVI 106 (109)
Q Consensus 77 ~~~~~~l~~~~~A~~~l~~g~~-~GKvvv~~ 106 (109)
+..+++|+++++|++.+++++. .+|++|++
T Consensus 321 ~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~ 351 (351)
T cd08285 321 THHFFGFDDIEEALMLMKDKPDDLIKPVIIF 351 (351)
T ss_pred eccccCHHHHHHHHHHHhcccCCeEEEEEeC
Confidence 3445899999999999999874 78999863
No 65
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=98.93 E-value=1.1e-08 Score=71.09 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=73.9
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCcee--eeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLV--YVEDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~--~~~~~ 79 (109)
+..++++|+++|+++.+|...+. ......++..++.+++++.|++.........+.++++++++++|+++ +.+..
T Consensus 241 ~~~~~~~l~~~G~~v~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (343)
T cd08236 241 IEQALALARPGGKVVLVGIPYGD---VTLSEEAFEKILRKELTIQGSWNSYSAPFPGDEWRTALDLLASGKIKVEPLITH 317 (343)
T ss_pred HHHHHHHhhcCCEEEEEcccCCC---cccccCCHHHHHhcCcEEEEEeeccccccchhhHHHHHHHHHcCCCChHHheee
Confidence 35678999999999999975431 11112344567789999999976433223356788899999999986 44556
Q ss_pred ecccchHHHHHHHhhc-CCCcceEEE
Q 033914 80 AEGLEKAPSALVGIFT-GQNVGKQLV 104 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~-g~~~GKvvv 104 (109)
+++++++.++++.+.+ +...||+|+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~k~v~ 343 (343)
T cd08236 318 RLPLEDGPAAFERLADREEFSGKVLL 343 (343)
T ss_pred eecHHHHHHHHHHHHcCCCCeeEEeC
Confidence 6899999999999998 667889874
No 66
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=98.93 E-value=1.7e-08 Score=69.61 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=77.3
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeeccccc-----chHHHHHHHHHHHHcCceeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYH-----QYPKFLELVMRAIKEGKLVYV 76 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~-----~~~~~~~~~~~~~~~G~l~~~ 76 (109)
+..++++++++|+++.+|...+.+ ...+++..++.+++++.|+....+.. ...+.++++++++++|.+++.
T Consensus 223 ~~~~~~~l~~~g~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 298 (334)
T PTZ00354 223 LSETAEVLAVDGKWIVYGFMGGAK----VEKFNLLPLLRKRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEIKPI 298 (334)
T ss_pred HHHHHHHhccCCeEEEEecCCCCc----ccccCHHHHHhhCCEEEeeeccccchhhhHHHHHHHHHHHHHHHHCCCccCc
Confidence 456789999999999999755421 11155566777888999987544221 122456778899999999877
Q ss_pred eeeecccchHHHHHHHhhcCCCcceEEEEeec
Q 033914 77 EDIAEGLEKAPSALVGIFTGQNVGKQLVVIAR 108 (109)
Q Consensus 77 ~~~~~~l~~~~~A~~~l~~g~~~GKvvv~~~~ 108 (109)
+...+++++++++++.+.+++..||+|+.+.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~kvvv~~~~ 330 (334)
T PTZ00354 299 VDRTYPLEEVAEAHTFLEQNKNIGKVVLTVNE 330 (334)
T ss_pred cccEEcHHHHHHHHHHHHhCCCCceEEEecCC
Confidence 66668999999999999988888999997654
No 67
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=98.92 E-value=1.2e-08 Score=70.19 Aligned_cols=98 Identities=17% Similarity=0.173 Sum_probs=75.9
Q ss_pred HHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccc-----cchHHHHHHHHHHHHcCceeeee
Q 033914 3 DAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFY-----HQYPKFLELVMRAIKEGKLVYVE 77 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~-----~~~~~~~~~~~~~~~~G~l~~~~ 77 (109)
..++++++++|+++.+|..+.. + ..++...+..+++++.++....+. ....+.+.++++++.+|.+.+..
T Consensus 221 ~~~~~~l~~~g~~v~~g~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 295 (323)
T cd05282 221 TRLARSLRPGGTLVNYGLLSGE----P-VPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTTPV 295 (323)
T ss_pred HHHHHhhCCCCEEEEEccCCCC----C-CCCCHHHHhhcCceEEEEEehHhhccCCHHHHHHHHHHHHHHHhCCCcccCc
Confidence 4567899999999999976542 1 123444555599999998865542 23346788899999999998876
Q ss_pred eeecccchHHHHHHHhhcCCCcceEEEE
Q 033914 78 DIAEGLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 78 ~~~~~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
..+++++++.+||+.+.+++..||+|++
T Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 323 (323)
T cd05282 296 GAKFPLEDFEEAVAAAEQPGRGGKVLLT 323 (323)
T ss_pred cceecHHHHHHHHHHHhcCCCCceEeeC
Confidence 6678999999999999998889999874
No 68
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=98.91 E-value=1e-08 Score=70.68 Aligned_cols=90 Identities=19% Similarity=0.159 Sum_probs=69.8
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCcee--eeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLV--YVEDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~--~~~~~ 79 (109)
++.++++++++|+++.+|..... ..++...++.++.++.|+..+. ++++++++++|+|+ +.+..
T Consensus 228 ~~~~~~~l~~~g~~v~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~ 293 (319)
T cd08242 228 LELALRLVRPRGTVVLKSTYAGP------ASFDLTKAVVNEITLVGSRCGP--------FAPALRLLRKGLVDVDPLITA 293 (319)
T ss_pred HHHHHHHhhcCCEEEEEcccCCC------CccCHHHheecceEEEEEeccc--------HHHHHHHHHcCCCChhhceEE
Confidence 45678899999999997764431 2345667788999999886432 66788899999994 45666
Q ss_pred ecccchHHHHHHHhhcCCCcceEEEEe
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
+++++++.+||+.++++. .+|+|+++
T Consensus 294 ~~~l~~~~~a~~~~~~~~-~~k~vi~~ 319 (319)
T cd08242 294 VYPLEEALEAFERAAEPG-ALKVLLRP 319 (319)
T ss_pred EEeHHHHHHHHHHHhcCC-ceEEEeCC
Confidence 789999999999998776 58999864
No 69
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=98.91 E-value=1.5e-08 Score=71.35 Aligned_cols=96 Identities=19% Similarity=0.150 Sum_probs=72.7
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee--eee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV--EDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~--~~~ 79 (109)
++.++++++++|+++.+|..+.. ....++...++.+++++.+++... ..+.+.++++++++|.+++. +..
T Consensus 270 ~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ll~~~~l~~~~~~~~ 341 (367)
T cd08263 270 FKLALDVVRDGGRAVVVGLAPGG----ATAEIPITRLVRRGIKIIGSYGAR----PRQDLPELVGLAASGKLDPEALVTH 341 (367)
T ss_pred HHHHHHHHhcCCEEEEEccCCCC----CccccCHHHHhhCCeEEEecCCCC----cHHHHHHHHHHHHcCCCCcccceeE
Confidence 35678999999999999975431 111344555667899998864322 14578889999999999874 445
Q ss_pred ecccchHHHHHHHhhcCCCcceEEEE
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
.++++++.+||+.+.++.+.||+||.
T Consensus 342 ~~~~~~~~~a~~~~~~~~~~g~~~~~ 367 (367)
T cd08263 342 KYKLEEINEAYENLRKGLIHGRAIVE 367 (367)
T ss_pred EecHHHHHHHHHHHhcCCccceeeeC
Confidence 57999999999999999989999973
No 70
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=98.91 E-value=1.4e-08 Score=70.55 Aligned_cols=99 Identities=23% Similarity=0.259 Sum_probs=75.7
Q ss_pred HHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccc-----cchHHHHHHHHHHHHcCceeeee
Q 033914 3 DAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFY-----HQYPKFLELVMRAIKEGKLVYVE 77 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~-----~~~~~~~~~~~~~~~~G~l~~~~ 77 (109)
..++++++++|+++.+|..... + ..++...++.+++++.++....+. ......+.++++++.+|.+++..
T Consensus 235 ~~~~~~l~~~G~~v~~g~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (341)
T cd08290 235 TELARLLSPGGTMVTYGGMSGQ----P-VTVPTSLLIFKDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKAPP 309 (341)
T ss_pred HHHHHHhCCCCEEEEEeccCCC----C-cccCHHHHhhCCceEEEEecHHHHhhcCHHHHHHHHHHHHHHHHcCCccCCc
Confidence 4577899999999999965432 1 123444568899999998764322 12234688899999999998876
Q ss_pred eeec---ccchHHHHHHHhhcCCCcceEEEEe
Q 033914 78 DIAE---GLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 78 ~~~~---~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
..++ +++++.+|++.+.++...||+|+.+
T Consensus 310 ~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~~~ 341 (341)
T cd08290 310 VEKVTDDPLEEFKDALANALKGGGGGKQVLVM 341 (341)
T ss_pred ccccccCCHHHHHHHHHHHhhcCCCCeEEEeC
Confidence 6667 9999999999999998899999863
No 71
>PLN02702 L-idonate 5-dehydrogenase
Probab=98.89 E-value=2.1e-08 Score=70.60 Aligned_cols=92 Identities=15% Similarity=0.172 Sum_probs=70.1
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceee--eeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVY--VEDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~--~~~~ 79 (109)
++.++++++++|+++.+|..++. .+.+...+..+++++.|++.. ...++++++++++|++++ .+..
T Consensus 268 ~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~ 335 (364)
T PLN02702 268 MSTALEATRAGGKVCLVGMGHNE------MTVPLTPAAAREVDVVGVFRY------RNTWPLCLEFLRSGKIDVKPLITH 335 (364)
T ss_pred HHHHHHHHhcCCEEEEEccCCCC------CcccHHHHHhCccEEEEeccC------hHHHHHHHHHHHcCCCCchHheEE
Confidence 46788999999999999975431 123445678899999998742 235678899999999863 3444
Q ss_pred ecc--cchHHHHHHHhhcCCCcceEEEE
Q 033914 80 AEG--LEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 80 ~~~--l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
+++ ++++.+||+.+.+++..||+|+.
T Consensus 336 ~~~l~~~~~~~a~~~~~~~~~~~kvv~~ 363 (364)
T PLN02702 336 RFGFSQKEVEEAFETSARGGNAIKVMFN 363 (364)
T ss_pred EeccChHHHHHHHHHHhcCCCceEEEEe
Confidence 544 48999999999988888999985
No 72
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=98.87 E-value=2.8e-08 Score=67.61 Aligned_cols=100 Identities=16% Similarity=0.125 Sum_probs=74.4
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccc---cchHHHHHHHHHHHHcCceeeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFY---HQYPKFLELVMRAIKEGKLVYVED 78 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~---~~~~~~~~~~~~~~~~G~l~~~~~ 78 (109)
++.++++++++|+++.+|..+.. ...++...+..+++++.++....+. ..+.+.+.++++++.++.+++...
T Consensus 218 ~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 292 (320)
T cd05286 218 FEGSLDSLRPRGTLVSFGNASGP-----VPPFDLLRLSKGSLFLTRPSLFHYIATREELLARAAELFDAVASGKLKVEIG 292 (320)
T ss_pred HHHHHHhhccCcEEEEEecCCCC-----CCccCHHHHHhcCcEEEEEehhhhcCCHHHHHHHHHHHHHHHHCCCCcCccc
Confidence 35678999999999999975432 1123344444788888876543332 234456778899999999987766
Q ss_pred eecccchHHHHHHHhhcCCCcceEEEEe
Q 033914 79 IAEGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 79 ~~~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
.+++++++.+|++.+.++...||++++|
T Consensus 293 ~~~~~~~~~~a~~~~~~~~~~~~vv~~~ 320 (320)
T cd05286 293 KRYPLADAAQAHRDLESRKTTGKLLLIP 320 (320)
T ss_pred ceEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 6789999999999999988899999865
No 73
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=98.86 E-value=2.4e-08 Score=69.56 Aligned_cols=94 Identities=17% Similarity=0.190 Sum_probs=70.8
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcC-ceeeeeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEG-KLVYVEDIA 80 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G-~l~~~~~~~ 80 (109)
++.++++++++|+++.+|..+.. ..++...++.+++++.|+....+ .+.+.++++++.+| ++.+.+..+
T Consensus 246 ~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 315 (341)
T PRK05396 246 FRQMLDNMNHGGRIAMLGIPPGD------MAIDWNKVIFKGLTIKGIYGREM----FETWYKMSALLQSGLDLSPIITHR 315 (341)
T ss_pred HHHHHHHHhcCCEEEEEecCCCC------CcccHHHHhhcceEEEEEEccCc----cchHHHHHHHHHcCCChhHheEEE
Confidence 45678999999999999975431 12335677889999998863222 23456778899998 455556667
Q ss_pred cccchHHHHHHHhhcCCCcceEEEEe
Q 033914 81 EGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 81 ~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
++++++.+||+.+.++. .||++++.
T Consensus 316 ~~l~~~~~a~~~~~~~~-~gk~vv~~ 340 (341)
T PRK05396 316 FPIDDFQKGFEAMRSGQ-SGKVILDW 340 (341)
T ss_pred EeHHHHHHHHHHHhcCC-CceEEEec
Confidence 89999999999999877 89999865
No 74
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=98.86 E-value=4e-08 Score=68.27 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=71.0
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee--eee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV--EDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~--~~~ 79 (109)
++.++++|+++|+++.+|..+. + .+.++..++.+++++.|+.. ..+.+.++++++++|.+++. +..
T Consensus 245 ~~~~~~~L~~~G~~v~~g~~~~---~---~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~ 312 (339)
T cd08232 245 LASALRVVRPGGTVVQVGMLGG---P---VPLPLNALVAKELDLRGSFR------FDDEFAEAVRLLAAGRIDVRPLITA 312 (339)
T ss_pred HHHHHHHHhcCCEEEEEecCCC---C---ccCcHHHHhhcceEEEEEec------CHHHHHHHHHHHHcCCCCchhheeE
Confidence 4577899999999999986442 1 12334455778899988763 23467888999999998643 456
Q ss_pred ecccchHHHHHHHhhcCCCcceEEEE
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
+++++++++|++.+.++...||+|++
T Consensus 313 ~~~~~~~~~a~~~~~~~~~~gkvvv~ 338 (339)
T cd08232 313 VFPLEEAAEAFALAADRTRSVKVQLS 338 (339)
T ss_pred EecHHHHHHHHHHHHhCCCceeEEEe
Confidence 68999999999999998889999986
No 75
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=98.85 E-value=4e-08 Score=67.72 Aligned_cols=93 Identities=23% Similarity=0.283 Sum_probs=71.4
Q ss_pred HHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeecc
Q 033914 3 DAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAEG 82 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~ 82 (109)
..++++++++|+++.+|...... ...+......++.++.++... ..+.++++++++++|.+++.+...++
T Consensus 240 ~~~~~~~~~~g~~v~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~ 309 (332)
T cd08259 240 EESLRSLNKGGRLVLIGNVTPDP-----APLRPGLLILKEIRIIGSISA-----TKADVEEALKLVKEGKIKPVIDRVVS 309 (332)
T ss_pred HHHHHHhhcCCEEEEEcCCCCCC-----cCCCHHHHHhCCcEEEEecCC-----CHHHHHHHHHHHHcCCCccceeEEEc
Confidence 56788999999999999755421 112333344678888877421 24568889999999999887776789
Q ss_pred cchHHHHHHHhhcCCCcceEEEE
Q 033914 83 LEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 83 l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
++++++||+.+.++...||++++
T Consensus 310 ~~~~~~a~~~~~~~~~~~kvv~~ 332 (332)
T cd08259 310 LEDINEALEDLKSGKVVGRIVLK 332 (332)
T ss_pred HHHHHHHHHHHHcCCcccEEEeC
Confidence 99999999999999889999874
No 76
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.82 E-value=5.6e-08 Score=66.50 Aligned_cols=97 Identities=18% Similarity=0.191 Sum_probs=71.0
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHH--hhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQV--VGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~--~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~ 79 (109)
++.++++++++|+++.+|..++.. .......... ..+++++.++..... ..+.+.++++++++|.+++....
T Consensus 221 ~~~~~~~l~~~g~~v~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 294 (320)
T cd08243 221 LKDSLRHLRPGGIVCMTGLLGGQW---TLEDFNPMDDIPSGVNLTLTGSSSGDV---PQTPLQELFDFVAAGHLDIPPSK 294 (320)
T ss_pred HHHHHHHhccCCEEEEEccCCCCc---ccCCcchhhhhhhccceEEEecchhhh---hHHHHHHHHHHHHCCceeccccc
Confidence 456789999999999999765421 0001111222 367888888764322 23467889999999999876666
Q ss_pred ecccchHHHHHHHhhcCCCcceEEE
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQLV 104 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvvv 104 (109)
+++++++++|++.+.++...||+|+
T Consensus 295 ~~~l~~~~~a~~~~~~~~~~~kvvv 319 (320)
T cd08243 295 VFTFDEIVEAHAYMESNRAFGKVVV 319 (320)
T ss_pred EEcHHHHHHHHHHHHhCCCCCcEEe
Confidence 7899999999999999988999886
No 77
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=98.82 E-value=4.1e-08 Score=68.27 Aligned_cols=93 Identities=20% Similarity=0.205 Sum_probs=69.1
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee--eee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV--EDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~--~~~ 79 (109)
+..++++++++|+++.+|..... . .......+.+++++.++... .++.+.++++++++|.+++. +..
T Consensus 247 ~~~~~~~l~~~g~~v~~g~~~~~---~---~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~g~i~~~~~i~~ 315 (341)
T cd08262 247 IQQIIEGAPPGGRIVVVGVCMES---D---NIEPALAIRKELTLQFSLGY-----TPEEFADALDALAEGKVDVAPMVTG 315 (341)
T ss_pred HHHHHHHhccCCEEEEECCCCCC---C---ccCHHHHhhcceEEEEEecc-----cHHHHHHHHHHHHcCCCChHHheEE
Confidence 35678899999999999975431 1 11222235688888865432 14467889999999999864 355
Q ss_pred ecccchHHHHHHHhhcCCCcceEEEE
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
+++++++++|++.+.+++..||+|++
T Consensus 316 ~~~l~~~~~a~~~~~~~~~~~kvvv~ 341 (341)
T cd08262 316 TVGLDGVPDAFEALRDPEHHCKILVD 341 (341)
T ss_pred EeeHHHHHHHHHHHhcCCCceEEEeC
Confidence 68999999999999999999999973
No 78
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=98.81 E-value=5.4e-08 Score=67.85 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=73.6
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee--eee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV--EDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~--~~~ 79 (109)
+..++++++++|+++.+|...... . ....++..++.+++++.|+.... .+.++++++++++|++.+. +..
T Consensus 247 ~~~~~~~l~~~g~~i~~g~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~i~~~~~~~~ 318 (345)
T cd08260 247 CRNSVASLRKRGRHVQVGLTLGEE--A-GVALPMDRVVARELEIVGSHGMP-----AHRYDAMLALIASGKLDPEPLVGR 318 (345)
T ss_pred HHHHHHHhhcCCEEEEeCCcCCCC--C-ccccCHHHHhhcccEEEeCCcCC-----HHHHHHHHHHHHcCCCChhhheeE
Confidence 356789999999999999865421 0 01345556678999999976421 4567888999999998864 445
Q ss_pred ecccchHHHHHHHhhcCCCcceEEEE
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
.++++++.+||+.+++++..||+|++
T Consensus 319 ~~~~~~~~~a~~~~~~~~~~~~~v~~ 344 (345)
T cd08260 319 TISLDEAPDALAAMDDYATAGITVIT 344 (345)
T ss_pred EecHHHHHHHHHHHHcCCCCceEEec
Confidence 67999999999999999999999864
No 79
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=98.81 E-value=4.7e-08 Score=69.18 Aligned_cols=99 Identities=17% Similarity=0.087 Sum_probs=73.0
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCC-------CccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCcee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEK-------SEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLV 74 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~-------~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~ 74 (109)
++.++++++++|+++.+|..+...... ....+++..+..++.++.+.... .++.+.++++++++|+++
T Consensus 268 ~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~l~ 342 (375)
T cd08282 268 LNQLIRVTRPGGGIGIVGVYVAEDPGAGDAAAKQGELSFDFGLLWAKGLSFGTGQAP-----VKKYNRQLRDLILAGRAK 342 (375)
T ss_pred HHHHHHHhhcCcEEEEEeccCCcccccccccccCccccccHHHHHhcCcEEEEecCC-----chhhHHHHHHHHHcCCCC
Confidence 567889999999999999754211100 01123555677788888776432 245678889999999998
Q ss_pred ee--eeeecccchHHHHHHHhhcCCCcceEEEEe
Q 033914 75 YV--EDIAEGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 75 ~~--~~~~~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
+. +..+++++++++||+.+.++. .||+|+++
T Consensus 343 ~~~~~~~~~~l~~~~~a~~~~~~~~-~~kvvv~~ 375 (375)
T cd08282 343 PSFVVSHVISLEDAPEAYARFDKRL-ETKVVIKP 375 (375)
T ss_pred hHHcEEEEeeHHHHHHHHHHHhcCC-ceEEEeCC
Confidence 74 566789999999999999988 99999853
No 80
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=98.80 E-value=7.1e-08 Score=66.76 Aligned_cols=96 Identities=17% Similarity=0.078 Sum_probs=71.2
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccc---c----chHHHHHHHHHHHHcCcee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFY---H----QYPKFLELVMRAIKEGKLV 74 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~---~----~~~~~~~~~~~~~~~G~l~ 74 (109)
++.++++++++|+++.+|.... .++...++.+++++.++....+. . ...+.+.++++++.+|.++
T Consensus 231 ~~~~~~~l~~~g~~v~~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 302 (336)
T cd08252 231 WDAMAELIAPQGHICLIVDPQE--------PLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLK 302 (336)
T ss_pred HHHHHHHhcCCCEEEEecCCCC--------cccchhhhcccceEEEEEeeccccccccchhhHHHHHHHHHHHHHCCCEe
Confidence 4567899999999999986421 23344455788999886653211 1 2235688899999999999
Q ss_pred eeee---eecccchHHHHHHHhhcCCCcceEEEE
Q 033914 75 YVED---IAEGLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 75 ~~~~---~~~~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
+... ..++++++++|++.+.+++..||++++
T Consensus 303 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~ 336 (336)
T cd08252 303 TTLTETLGPINAENLREAHALLESGKTIGKIVLE 336 (336)
T ss_pred cceeeeecCCCHHHHHHHHHHHHcCCccceEEeC
Confidence 7533 236999999999999999999999863
No 81
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=98.80 E-value=5.4e-08 Score=67.26 Aligned_cols=98 Identities=16% Similarity=0.088 Sum_probs=65.8
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcc------eeeeeeeecccccchHHHHHHHHHHHHcCceee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKR------IRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVY 75 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~------~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~ 75 (109)
+..++++++++|+++.+|..+.. ....+...+..++ .++.+++ ...+...+.+.++++++.+|++++
T Consensus 222 ~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~l~~ 294 (327)
T PRK10754 222 WEASLDCLQRRGLMVSFGNASGP-----VTGVNLGILNQKGSLYVTRPSLQGYI--TTREELTEASNELFSLIASGVIKV 294 (327)
T ss_pred HHHHHHHhccCCEEEEEccCCCC-----CCCcCHHHHhccCceEEecceeeccc--CCHHHHHHHHHHHHHHHHCCCeee
Confidence 35678899999999999976531 0112222222221 1222322 111233445677899999999986
Q ss_pred ee--eeecccchHHHHHHHhhcCCCcceEEEEe
Q 033914 76 VE--DIAEGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 76 ~~--~~~~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
.. ..+++++++++|++.+.++...||+|+.+
T Consensus 295 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 327 (327)
T PRK10754 295 DVAEQQKFPLKDAQRAHEILESRATQGSSLLIP 327 (327)
T ss_pred ecccCcEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence 53 45689999999999999999999999864
No 82
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=98.80 E-value=4.9e-08 Score=68.86 Aligned_cols=97 Identities=15% Similarity=0.208 Sum_probs=71.9
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceee-eeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVY-VEDIA 80 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~-~~~~~ 80 (109)
++.++++++++|+++.+|..... +...+++..++.+++++.++....+. ..+.+.++++++++|++++ ....+
T Consensus 268 ~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~g~l~~~~~~~~ 341 (365)
T cd08278 268 IEQAVDALAPRGTLALVGAPPPG----AEVTLDVNDLLVSGKTIRGVIEGDSV--PQEFIPRLIELYRQGKFPFDKLVTF 341 (365)
T ss_pred HHHHHHHhccCCEEEEeCcCCCC----CccccCHHHHhhcCceEEEeecCCcC--hHHHHHHHHHHHHcCCCChHHheEE
Confidence 46788999999999999975321 11235566666899999988754321 2456788999999999865 23446
Q ss_pred cccchHHHHHHHhhcCCCcceEEEE
Q 033914 81 EGLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 81 ~~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
++|+++++||+.+.+++. -|+|++
T Consensus 342 ~~l~~~~~a~~~~~~~~~-~k~~~~ 365 (365)
T cd08278 342 YPFEDINQAIADSESGKV-IKPVLR 365 (365)
T ss_pred ecHHHHHHHHHHHHCCCc-eEEEEC
Confidence 899999999999998765 488763
No 83
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=98.79 E-value=6.1e-08 Score=67.00 Aligned_cols=103 Identities=27% Similarity=0.478 Sum_probs=74.3
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCC-----CccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEK-----SEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV 76 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~-----~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~ 76 (109)
+..++++++++|+++.+|..++...+. ....++ ...+.+++++.++....+....++.+.++++++++|.+++.
T Consensus 220 ~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 298 (329)
T cd08250 220 FDTCVDNLALKGRLIVIGFISGYQSGTGPSPVKGATLP-PKLLAKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCE 298 (329)
T ss_pred HHHHHHHhccCCeEEEEecccCCcccCccccccccccc-HHHhhcCceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeee
Confidence 356789999999999999765421000 000111 24577889999987643332345678889999999999985
Q ss_pred ee--eecccchHHHHHHHhhcCCCcceEEEE
Q 033914 77 ED--IAEGLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 77 ~~--~~~~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
.. .+++++++.+|++.+.++...||++++
T Consensus 299 ~~~~~~~~~~~~~~a~~~~~~~~~~~kvvv~ 329 (329)
T cd08250 299 VDPTRFRGLESVADAVDYLYSGKNIGKVVVE 329 (329)
T ss_pred ECCccccCHHHHHHHHHHHHcCCCCceEEeC
Confidence 42 347999999999999998888999873
No 84
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=98.79 E-value=6.3e-08 Score=67.34 Aligned_cols=94 Identities=18% Similarity=0.116 Sum_probs=71.5
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceee--eeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVY--VEDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~--~~~~ 79 (109)
+..++++++++|+++.+|..+..+ ...++...+..+++++.+++... ++.++++++++++|.+++ .+..
T Consensus 248 ~~~~~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~l~~~~~l~~~~~~~~ 318 (343)
T cd08235 248 QAQALELVRKGGRILFFGGLPKGS----TVNIDPNLIHYREITITGSYAAS-----PEDYKEALELIASGKIDVKDLITH 318 (343)
T ss_pred HHHHHHHhhcCCEEEEEeccCCCC----CcccCHHHHhhCceEEEEEecCC-----hhhHHHHHHHHHcCCCChHHheee
Confidence 356788999999999999755421 11334456777888988876422 456788899999999873 3455
Q ss_pred ecccchHHHHHHHhhcCCCcceEEEE
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
+++++++.+|++.+.+++ .||+|++
T Consensus 319 ~~~~~~~~~a~~~~~~~~-~~k~vi~ 343 (343)
T cd08235 319 RFPLEDIEEAFELAADGK-SLKIVIT 343 (343)
T ss_pred EeeHHHHHHHHHHHhCCC-cEEEEeC
Confidence 689999999999999999 9999973
No 85
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=98.79 E-value=6e-08 Score=67.47 Aligned_cols=94 Identities=17% Similarity=0.057 Sum_probs=70.8
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee--eee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV--EDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~--~~~ 79 (109)
++.++++++++|+++.+|...... ...+....+.+++++.+.... ..+.+.++++++++|++++. +..
T Consensus 249 ~~~~~~~l~~~g~~v~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~ 318 (344)
T cd08284 249 LDLAFDLVRPGGVISSVGVHTAEE-----FPFPGLDAYNKNLTLRFGRCP-----VRSLFPELLPLLESGRLDLEFLIDH 318 (344)
T ss_pred HHHHHHhcccCCEEEEECcCCCCC-----ccccHHHHhhcCcEEEEecCC-----cchhHHHHHHHHHcCCCChHHhEee
Confidence 456789999999999999765321 123345567888888765311 34578889999999999863 455
Q ss_pred ecccchHHHHHHHhhcCCCcceEEEEe
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
+++++++++||+.+.+++. ||+|+++
T Consensus 319 ~~~~~~~~~a~~~~~~~~~-~k~Vi~~ 344 (344)
T cd08284 319 RMPLEEAPEAYRLFDKRKV-LKVVLDP 344 (344)
T ss_pred eecHHHHHHHHHHHhcCCc-eEEEecC
Confidence 6799999999999998887 9999853
No 86
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=98.78 E-value=4.8e-08 Score=68.31 Aligned_cols=91 Identities=15% Similarity=0.095 Sum_probs=68.9
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHH-hhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee--ee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQV-VGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV--ED 78 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~-~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~--~~ 78 (109)
+..++++++++|+++.+|..... ...++..+ ..+++++.|+.... ..+.++++++++|.+++. +.
T Consensus 257 ~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~g~l~~~~~~~ 324 (350)
T cd08256 257 VEQGLNMIRKLGRFVEFSVFGDP------VTVDWSIIGDRKELDVLGSHLGP------YCYPIAIDLIASGRLPTDGIVT 324 (350)
T ss_pred HHHHHHHhhcCCEEEEEccCCCC------CccChhHhhcccccEEEEeccCc------hhHHHHHHHHHcCCCChhHheE
Confidence 35678999999999999864421 12233333 36788888876542 257788999999999874 45
Q ss_pred eecccchHHHHHHHhhcCCCcceEEE
Q 033914 79 IAEGLEKAPSALVGIFTGQNVGKQLV 104 (109)
Q Consensus 79 ~~~~l~~~~~A~~~l~~g~~~GKvvv 104 (109)
.+++++++++||+.++++...||+|+
T Consensus 325 ~~~~l~~~~~a~~~~~~~~~~~kvv~ 350 (350)
T cd08256 325 HQFPLEDFEEAFELMARGDDSIKVVL 350 (350)
T ss_pred EEeEHHHHHHHHHHHHhCCCceEEeC
Confidence 66899999999999999988999875
No 87
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=98.78 E-value=9.4e-08 Score=65.40 Aligned_cols=97 Identities=16% Similarity=0.065 Sum_probs=73.4
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee--eee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV--EDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~--~~~ 79 (109)
++.++++++++|+++.+|..+.. + .++++..+..+++++.++..... ....+.++++++++++|.+++. ...
T Consensus 212 ~~~~~~~l~~~g~~~~~g~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 285 (312)
T cd08269 212 LDLAGELVAERGRLVIFGYHQDG----P-RPVPFQTWNWKGIDLINAVERDP-RIGLEGMREAVKLIADGRLDLGSLLTH 285 (312)
T ss_pred HHHHHHHhccCCEEEEEccCCCC----C-cccCHHHHhhcCCEEEEecccCc-cchhhHHHHHHHHHHcCCCCchhheee
Confidence 45678999999999999975421 1 13445567788999888764332 2234678889999999999873 455
Q ss_pred ecccchHHHHHHHhhcCCC-cceEEE
Q 033914 80 AEGLEKAPSALVGIFTGQN-VGKQLV 104 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~-~GKvvv 104 (109)
+++++++++|++.+.+++. .+|+++
T Consensus 286 ~~~~~~~~~a~~~~~~~~~~~~~~~~ 311 (312)
T cd08269 286 EFPLEELGDAFEAARRRPDGFIKGVI 311 (312)
T ss_pred eecHHHHHHHHHHHHhCCCCceEEEe
Confidence 6899999999999999865 689987
No 88
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=98.78 E-value=1e-07 Score=65.69 Aligned_cols=98 Identities=18% Similarity=0.209 Sum_probs=73.4
Q ss_pred HHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccc-cchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 3 DAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFY-HQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~-~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
+.++.+++.+|+++.+|...+. + .+.++..++.+++++.|+...... ....+.+..+.+++.+|.+++. ...+
T Consensus 226 ~~~~~~~~~~g~~~~~G~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~ 299 (324)
T cd08288 226 ANVLAQTRYGGAVAACGLAGGA----D-LPTTVMPFILRGVTLLGIDSVMAPIERRRAAWARLARDLDPALLEAL-TREI 299 (324)
T ss_pred HHHHHHhcCCCEEEEEEecCCC----C-CCcchhhhhccccEEEEEEeecccchhhHHHHHHHHHHHhcCCcccc-ceee
Confidence 4567788999999999986431 1 123344556899999998643222 2345677888899999988774 4567
Q ss_pred ccchHHHHHHHhhcCCCcceEEEEe
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
+++++++||+.+.+++..||+++++
T Consensus 300 ~~~~~~~a~~~~~~~~~~~~vvv~~ 324 (324)
T cd08288 300 PLADVPDAAEAILAGQVRGRVVVDV 324 (324)
T ss_pred cHHHHHHHHHHHhcCCccCeEEEeC
Confidence 9999999999999999999999864
No 89
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=98.77 E-value=9.9e-08 Score=65.05 Aligned_cols=99 Identities=21% Similarity=0.210 Sum_probs=74.4
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccc----hHHHHHHHHHHHHcCceeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQ----YPKFLELVMRAIKEGKLVYVE 77 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~----~~~~~~~~~~~~~~G~l~~~~ 77 (109)
++.++++++++|+++.+|..+.. ....+....+.+++++.|+....+... ..+.+.++++++.++.+++..
T Consensus 221 ~~~~~~~~~~~g~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (323)
T cd08241 221 FEASLRSLAWGGRLLVIGFASGE-----IPQIPANLLLLKNISVVGVYWGAYARREPELLRANLAELFDLLAEGKIRPHV 295 (323)
T ss_pred HHHHHHhhccCCEEEEEccCCCC-----cCcCCHHHHhhcCcEEEEEecccccchhHHHHHHHHHHHHHHHHCCCccccc
Confidence 35678899999999999975431 111223345778999999876544322 235678899999999998776
Q ss_pred eeecccchHHHHHHHhhcCCCcceEEEE
Q 033914 78 DIAEGLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 78 ~~~~~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
...++++++.+|++.+.++...||++++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~vvv~ 323 (323)
T cd08241 296 SAVFPLEQAAEALRALADRKATGKVVLT 323 (323)
T ss_pred ceEEcHHHHHHHHHHHHhCCCCCcEEeC
Confidence 6678999999999999988888999863
No 90
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=98.76 E-value=8.6e-08 Score=66.81 Aligned_cols=93 Identities=19% Similarity=0.201 Sum_probs=69.4
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchH-HHhhcceeeeeeeecccccchHHHHHHHHHHHHcCcee--eeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLM-QVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLV--YVED 78 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~-~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~--~~~~ 78 (109)
++.++++++++|+++.+|..... . +.+.. .++.+++++.+++... +.+.+.++++++++|+++ +.+.
T Consensus 244 ~~~~~~~l~~~g~~v~~g~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~ 313 (340)
T TIGR00692 244 LEQGLQAVTPGGRVSLLGLPPGK---V---TIDFTNKVIFKGLTIYGITGRH----MFETWYTVSRLIQSGKLDLDPIIT 313 (340)
T ss_pred HHHHHHhhcCCCEEEEEccCCCC---c---ccchhhhhhhcceEEEEEecCC----chhhHHHHHHHHHcCCCChHHhee
Confidence 35678899999999999975421 1 12233 5677888988876322 235678899999999987 3345
Q ss_pred eecccchHHHHHHHhhcCCCcceEEEE
Q 033914 79 IAEGLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 79 ~~~~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
..++++++.+|++.+.+++ .||+|++
T Consensus 314 ~~~~l~~~~~a~~~~~~~~-~gkvvv~ 339 (340)
T TIGR00692 314 HKFKFDKFEKGFELMRSGQ-TGKVILS 339 (340)
T ss_pred eeeeHHHHHHHHHHHhcCC-CceEEEe
Confidence 6679999999999999887 4999986
No 91
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.75 E-value=1.7e-07 Score=64.59 Aligned_cols=105 Identities=18% Similarity=0.241 Sum_probs=75.6
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCC-----------ccccchHHHhhcceeeeeeeeccccc---chHHHHHHHHHH
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKS-----------EGVHNLMQVVGKRIRMEGFLAGDFYH---QYPKFLELVMRA 67 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~-----------~~~~~~~~~~~k~~~~~G~~~~~~~~---~~~~~~~~~~~~ 67 (109)
++.++++++++|+++.+|.....+.... ...++...++.+++++.++....... .....+.+++++
T Consensus 219 ~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (337)
T cd08275 219 TRKSYDLLKPMGRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEERELLTEVMDKLLKL 298 (337)
T ss_pred HHHHHHhhccCcEEEEEeecCCcCcccccccccccccccccccCHHHHhhcCceEEEeechhhhhChHHHHHHHHHHHHH
Confidence 3567889999999999997553211000 00122245678899999987542211 122457888999
Q ss_pred HHcCceeeeeeeecccchHHHHHHHhhcCCCcceEEEEe
Q 033914 68 IKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 68 ~~~G~l~~~~~~~~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
+.+|.+++.....+++++++++++.+.++...||+++++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~ 337 (337)
T cd08275 299 YEEGKIKPKIDSVFPFEEVGEAMRRLQSRKNIGKVVLTP 337 (337)
T ss_pred HHCCCCCCceeeEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence 999999887767789999999999999988899999864
No 92
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=98.74 E-value=1.1e-07 Score=65.80 Aligned_cols=91 Identities=14% Similarity=0.070 Sum_probs=68.7
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
++.++++++++|+++.+|.... ....+++.. +.++..+.|+.... .+.+.++++++++|.+++. ..++
T Consensus 239 ~~~~~~~l~~~G~~v~~g~~~~-----~~~~~~~~~-~~~~~~i~~~~~~~-----~~~~~~~~~l~~~~~l~~~-~~~~ 306 (329)
T cd08298 239 VPAALRAVKKGGRVVLAGIHMS-----DIPAFDYEL-LWGEKTIRSVANLT-----RQDGEEFLKLAAEIPIKPE-VETY 306 (329)
T ss_pred HHHHHHHhhcCCEEEEEcCCCC-----CCCccchhh-hhCceEEEEecCCC-----HHHHHHHHHHHHcCCCCce-EEEE
Confidence 5678999999999999985332 111233333 56788888876421 3467888999999999875 4568
Q ss_pred ccchHHHHHHHhhcCCCcceEEE
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLV 104 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv 104 (109)
+++++.+||+.+++++..||+|+
T Consensus 307 ~~~~~~~a~~~~~~~~~~~~~v~ 329 (329)
T cd08298 307 PLEEANEALQDLKEGRIRGAAVL 329 (329)
T ss_pred eHHHHHHHHHHHHcCCCcceeeC
Confidence 99999999999999999999874
No 93
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=98.74 E-value=1.1e-07 Score=64.69 Aligned_cols=97 Identities=20% Similarity=0.230 Sum_probs=73.0
Q ss_pred HHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccc-c----chHHHHHHHHHHHHcCceeeee
Q 033914 3 DAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFY-H----QYPKFLELVMRAIKEGKLVYVE 77 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~-~----~~~~~~~~~~~~~~~G~l~~~~ 77 (109)
..++++++++|+++.+|..+... ...++..++.+++++.|+...... . .....+.++++++.+|++++..
T Consensus 222 ~~~~~~~~~~g~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (323)
T cd05276 222 ARNLRALAPDGRLVLIGLLGGAK-----AELDLAPLLRKRLTLTGSTLRSRSLEEKAALAAAFREHVWPLFASGRIRPVI 296 (323)
T ss_pred HHHHHhhccCCEEEEEecCCCCC-----CCCchHHHHHhCCeEEEeeccchhhhccHHHHHHHHHHHHHHHHCCCccCCc
Confidence 45778899999999999765431 123445566799999998764321 1 1234567788899999998776
Q ss_pred eeecccchHHHHHHHhhcCCCcceEEE
Q 033914 78 DIAEGLEKAPSALVGIFTGQNVGKQLV 104 (109)
Q Consensus 78 ~~~~~l~~~~~A~~~l~~g~~~GKvvv 104 (109)
...++++++++|++.+.++...||+++
T Consensus 297 ~~~~~~~~~~~a~~~~~~~~~~~kvv~ 323 (323)
T cd05276 297 DKVFPLEEAAEAHRRMESNEHIGKIVL 323 (323)
T ss_pred ceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence 667899999999999998888899874
No 94
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=98.73 E-value=1.6e-07 Score=64.13 Aligned_cols=100 Identities=21% Similarity=0.229 Sum_probs=75.1
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeeccccc-----chHHHHHHHHHHHHcCceeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYH-----QYPKFLELVMRAIKEGKLVYV 76 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~-----~~~~~~~~~~~~~~~G~l~~~ 76 (109)
+..++++++++|+++.+|..+..+ ...++..++.+++++.|+....+.. .....+.+++++++++.+++.
T Consensus 221 ~~~~~~~l~~~g~~v~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (325)
T TIGR02824 221 LNRNIKALALDGRIVQIGFQGGRK-----AELDLGPLLAKRLTITGSTLRARPVAEKAAIAAELREHVWPLLASGRVRPV 295 (325)
T ss_pred HHHHHHhhccCcEEEEEecCCCCc-----CCCChHHHHhcCCEEEEEehhhcchhhhHHHHHHHHHHHHHHHHCCcccCc
Confidence 356778999999999999754321 1344555668999999988644211 122456778899999999876
Q ss_pred eeeecccchHHHHHHHhhcCCCcceEEEEe
Q 033914 77 EDIAEGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 77 ~~~~~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
....+++++++++++.+.++...||+++++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 325 (325)
T TIGR02824 296 IDKVFPLEDAAQAHALMESGDHIGKIVLTV 325 (325)
T ss_pred cccEEeHHHHHHHHHHHHhCCCcceEEEeC
Confidence 666689999999999999888899999864
No 95
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=98.72 E-value=1e-07 Score=66.43 Aligned_cols=94 Identities=19% Similarity=0.170 Sum_probs=69.4
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccch-HHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceee--eee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNL-MQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVY--VED 78 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~-~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~--~~~ 78 (109)
++.++++|+++|+++.+|..+.. . ..++ ..+..+++++.++.... ..+.+.++.+++++|.+++ .+.
T Consensus 245 ~~~~~~~l~~~G~~v~~g~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~ 314 (341)
T cd05281 245 IEQGLKALTPGGRVSILGLPPGP---V---DIDLNNLVIFKGLTVQGITGRK----MFETWYQVSALLKSGKVDLSPVIT 314 (341)
T ss_pred HHHHHHHhccCCEEEEEccCCCC---c---ccccchhhhccceEEEEEecCC----cchhHHHHHHHHHcCCCChhHheE
Confidence 35678999999999999875431 1 1122 23677888888876322 2345778899999999863 344
Q ss_pred eecccchHHHHHHHhhcCCCcceEEEEe
Q 033914 79 IAEGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 79 ~~~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
..++++++++||+.+.++. .||+|+++
T Consensus 315 ~~~~~~~~~~a~~~~~~~~-~gk~vv~~ 341 (341)
T cd05281 315 HKLPLEDFEEAFELMRSGK-CGKVVLYP 341 (341)
T ss_pred EEecHHHHHHHHHHHhcCC-CceEEecC
Confidence 4579999999999999998 99999864
No 96
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.72 E-value=1.4e-07 Score=65.78 Aligned_cols=93 Identities=13% Similarity=0.123 Sum_probs=70.8
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee--eee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV--EDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~--~~~ 79 (109)
++.++++++++|+++.+|...+. ..+++...+.+++++.+.... ..+.+.++++++++|++++. +..
T Consensus 251 ~~~~~~~l~~~g~~v~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (345)
T cd08287 251 MEQAIAIARPGGRVGYVGVPHGG------VELDVRELFFRNVGLAGGPAP-----VRRYLPELLDDVLAGRINPGRVFDL 319 (345)
T ss_pred HHHHHHhhccCCEEEEecccCCC------CccCHHHHHhcceEEEEecCC-----cHHHHHHHHHHHHcCCCCHHHhEEe
Confidence 46788999999999999875421 124444567899999886432 24578889999999999863 455
Q ss_pred ecccchHHHHHHHhhcCCCcceEEEEe
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
+++++++++|++.+.++.. .|++|++
T Consensus 320 ~~~l~~~~~a~~~~~~~~~-~k~~~~~ 345 (345)
T cd08287 320 TLPLDEVAEGYRAMDERRA-IKVLLRP 345 (345)
T ss_pred eecHHHHHHHHHHHhCCCc-eEEEeCC
Confidence 6899999999999887765 4999863
No 97
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=98.71 E-value=1.3e-07 Score=65.73 Aligned_cols=95 Identities=17% Similarity=0.056 Sum_probs=69.6
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee--eee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV--EDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~--~~~ 79 (109)
++.++++++++|+++.+|...+. ..... ....+.+++++.++.... .+.+.++++++++|.+++. +..
T Consensus 250 ~~~~~~~l~~~G~~v~~g~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~ 319 (347)
T cd05278 250 FEQAVKVVRPGGTIANVGVYGKP----DPLPL-LGEWFGKNLTFKTGLVPV-----RARMPELLDLIEEGKIDPSKLITH 319 (347)
T ss_pred HHHHHHHhhcCCEEEEEcCCCCC----cccCc-cchhhhceeEEEeeccCc-----hhHHHHHHHHHHcCCCChhHcEEE
Confidence 45678999999999999965431 10011 123356888888765321 4578889999999999864 445
Q ss_pred ecccchHHHHHHHhhcCCC-cceEEEEe
Q 033914 80 AEGLEKAPSALVGIFTGQN-VGKQLVVI 106 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~-~GKvvv~~ 106 (109)
.++++++.+|++.+.+++. .+|+|+++
T Consensus 320 ~~~~~~~~~a~~~~~~~~~~~~~~vv~~ 347 (347)
T cd05278 320 RFPLDDILKAYRLFDNKPDGCIKVVIRP 347 (347)
T ss_pred EecHHHHHHHHHHHhcCCCCceEEEecC
Confidence 6899999999999988877 78999864
No 98
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=98.70 E-value=2.1e-07 Score=65.55 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=71.1
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee--eee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV--EDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~--~~~ 79 (109)
++.++++++++|+++.+|..... ....++...+..++.++.|++.+.. ...+.++++++++++|++++. +..
T Consensus 265 ~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~g~l~~~~~~~~ 338 (363)
T cd08279 265 IRQALAMTRKGGTAVVVGMGPPG----ETVSLPALELFLSEKRLQGSLYGSA--NPRRDIPRLLDLYRAGRLKLDELVTR 338 (363)
T ss_pred HHHHHHHhhcCCeEEEEecCCCC----cccccCHHHHhhcCcEEEEEEecCc--CcHHHHHHHHHHHHcCCCCcceeEEE
Confidence 35678999999999999875421 1123455566778888888765322 235678899999999999863 455
Q ss_pred ecccchHHHHHHHhhcCCCcceEE
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQL 103 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvv 103 (109)
+++++++.+||+.+++++..+.|+
T Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~ 362 (363)
T cd08279 339 RYSLDEINEAFADMLAGENARGVI 362 (363)
T ss_pred EEcHHHHHHHHHHHhcCCceeEEe
Confidence 689999999999999888765554
No 99
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=98.70 E-value=1.8e-07 Score=65.25 Aligned_cols=92 Identities=15% Similarity=0.074 Sum_probs=68.7
Q ss_pred HHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee--eeee
Q 033914 3 DAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV--EDIA 80 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~--~~~~ 80 (109)
+.++++++++|+++.+|..... .++++..++.+++++.+.... .+.+.++.+++++|.+++. +..+
T Consensus 250 ~~~~~~l~~~g~~v~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~ 317 (345)
T cd08286 250 ELCQELVAPGGHIANVGVHGKP------VDLHLEKLWIKNITITTGLVD------TNTTPMLLKLVSSGKLDPSKLVTHR 317 (345)
T ss_pred HHHHHhccCCcEEEEecccCCC------CCcCHHHHhhcCcEEEeecCc------hhhHHHHHHHHHcCCCChHHcEEeE
Confidence 5567899999999999974321 234555667899999886432 1357788899999998763 4566
Q ss_pred cccchHHHHHHHhhcCCC--cceEEEEe
Q 033914 81 EGLEKAPSALVGIFTGQN--VGKQLVVI 106 (109)
Q Consensus 81 ~~l~~~~~A~~~l~~g~~--~GKvvv~~ 106 (109)
++++++.+|++.+.+... ..|++|++
T Consensus 318 ~~l~~~~~a~~~~~~~~~~~~~k~~~~~ 345 (345)
T cd08286 318 FKLSEIEKAYDTFSAAAKHKALKVIIDF 345 (345)
T ss_pred eeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence 899999999999987643 45998864
No 100
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=98.69 E-value=2.4e-07 Score=64.43 Aligned_cols=93 Identities=15% Similarity=0.061 Sum_probs=71.2
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceee--eeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVY--VEDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~--~~~~ 79 (109)
+..++++++++|+++.+|..... ...+...+..+++++.+... ...+.++++.+++++|.+++ .+..
T Consensus 241 ~~~~~~~l~~~G~~i~~g~~~~~------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~i~~~~~~~~ 309 (337)
T cd08261 241 MEEAVELVAHGGRVVLVGLSKGP------VTFPDPEFHKKELTILGSRN-----ATREDFPDVIDLLESGKVDPEALITH 309 (337)
T ss_pred HHHHHHHHhcCCEEEEEcCCCCC------CccCHHHHHhCCCEEEEecc-----CChhhHHHHHHHHHcCCCChhhheEE
Confidence 35678899999999999875421 12334456678888887632 13457888999999999997 6666
Q ss_pred ecccchHHHHHHHhhcC-CCcceEEEE
Q 033914 80 AEGLEKAPSALVGIFTG-QNVGKQLVV 105 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g-~~~GKvvv~ 105 (109)
+++++++.+|++.+.++ ...||+|++
T Consensus 310 ~~~~~~~~~a~~~~~~~~~~~~k~v~~ 336 (337)
T cd08261 310 RFPFEDVPEAFDLWEAPPGGVIKVLIE 336 (337)
T ss_pred EeeHHHHHHHHHHHhcCCCceEEEEEe
Confidence 78999999999999988 478999986
No 101
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=98.69 E-value=2.5e-07 Score=64.07 Aligned_cols=92 Identities=20% Similarity=0.226 Sum_probs=69.3
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee--eee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV--EDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~--~~~ 79 (109)
+..++++++++|+++.+|..... .. ...+...++.+++++.++... .+.++++++++++|++++. +..
T Consensus 240 ~~~~~~~l~~~G~~v~~g~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~ 309 (334)
T cd08234 240 LEQAIEYARRGGTVLVFGVYAPD---AR-VSISPFEIFQKELTIIGSFIN------PYTFPRAIALLESGKIDVKGLVSH 309 (334)
T ss_pred HHHHHHHHhcCCEEEEEecCCCC---CC-cccCHHHHHhCCcEEEEeccC------HHHHHHHHHHHHcCCCChhhhEEE
Confidence 35678899999999999975431 11 123344456688899887642 3467889999999999753 455
Q ss_pred ecccchHHHHHHHhhcCCCcceEEE
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQLV 104 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvvv 104 (109)
+++++++++|++.+.+ ...||+|+
T Consensus 310 ~~~~~~~~~a~~~~~~-~~~~k~vi 333 (334)
T cd08234 310 RLPLEEVPEALEGMRS-GGALKVVV 333 (334)
T ss_pred EecHHHHHHHHHHHhc-CCceEEEe
Confidence 6899999999999998 77899986
No 102
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=98.68 E-value=2.4e-07 Score=64.12 Aligned_cols=92 Identities=20% Similarity=0.178 Sum_probs=71.1
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
...++++++++|+++.+|..... . ...+...++.++.++.|+..+. ...++++++++.+|.+++.. ..+
T Consensus 239 ~~~~~~~l~~~G~~i~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~~~l~~~~-~~~ 307 (330)
T cd08245 239 AEAALGGLRRGGRIVLVGLPESP----P-FSPDIFPLIMKRQSIAGSTHGG-----RADLQEALDFAAEGKVKPMI-ETF 307 (330)
T ss_pred HHHHHHhcccCCEEEEECCCCCC----c-cccchHHHHhCCCEEEEeccCC-----HHHHHHHHHHHHcCCCcceE-EEE
Confidence 35678999999999999975432 1 1122445778899999887542 34678888999999998643 457
Q ss_pred ccchHHHHHHHhhcCCCcceEEE
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLV 104 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv 104 (109)
+++++.+||+.+.++...||+|+
T Consensus 308 ~~~~~~~a~~~~~~~~~~~~~v~ 330 (330)
T cd08245 308 PLDQANEAYERMEKGDVRFRFVL 330 (330)
T ss_pred cHHHHHHHHHHHHcCCCCcceeC
Confidence 99999999999999999999875
No 103
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.67 E-value=1.3e-07 Score=65.55 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=72.5
Q ss_pred HHHHHHhhccC-CeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeee
Q 033914 2 LDAVRLNMRIR-GRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIA 80 (109)
Q Consensus 2 ~~~~l~~l~~~-Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~ 80 (109)
+.+++.+.+.| |.-|++|..+.. ...+..+.. +.+..++.|+..+.|.. +.++..+.+.+.+++++....++
T Consensus 276 m~~al~s~h~GwG~sv~iGv~~~~----~~i~~~p~~-l~~GR~~~Gs~FGG~K~--~~~iP~lV~~y~~~~l~ld~~IT 348 (375)
T KOG0022|consen 276 MRAALESCHKGWGKSVVIGVAAAG----QEISTRPFQ-LVTGRTWKGSAFGGFKS--KSDIPKLVKDYMKKKLNLDEFIT 348 (375)
T ss_pred HHHHHHHhhcCCCeEEEEEecCCC----cccccchhh-hccccEEEEEecccccc--hhhhhHHHHHHHhCccchhhhhh
Confidence 56889999999 999999986542 112334444 44577888888777653 45677888888999999887666
Q ss_pred c--ccchHHHHHHHhhcCCCcceEEEE
Q 033914 81 E--GLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 81 ~--~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
| ||+++++||++|.+|+.. |-|+.
T Consensus 349 h~l~f~~In~AF~ll~~Gksi-R~vl~ 374 (375)
T KOG0022|consen 349 HELPFEEINKAFDLLHEGKSI-RCVLW 374 (375)
T ss_pred cccCHHHHHHHHHHHhCCceE-EEEEe
Confidence 4 999999999999999865 76664
No 104
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.67 E-value=2.5e-07 Score=64.55 Aligned_cols=91 Identities=18% Similarity=0.153 Sum_probs=68.8
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCcee--eeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLV--YVEDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~--~~~~~ 79 (109)
++.++++++++|+++.+|..... ..++...+..+.+++.+++.. .+.+.+++++++++.+. +....
T Consensus 248 ~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~ 315 (343)
T cd05285 248 IQTAIYATRPGGTVVLVGMGKPE------VTLPLSAASLREIDIRGVFRY------ANTYPTAIELLASGKVDVKPLITH 315 (343)
T ss_pred HHHHHHHhhcCCEEEEEccCCCC------CccCHHHHhhCCcEEEEeccC------hHHHHHHHHHHHcCCCCchHhEEE
Confidence 35678899999999999964431 123445677888898887532 24677888999999875 33455
Q ss_pred ecccchHHHHHHHhhcCC-CcceEEE
Q 033914 80 AEGLEKAPSALVGIFTGQ-NVGKQLV 104 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~-~~GKvvv 104 (109)
+++++++.+|++.+.+++ ..+|+++
T Consensus 316 ~~~l~~~~~a~~~~~~~~~~~~k~~~ 341 (343)
T cd05285 316 RFPLEDAVEAFETAAKGKKGVIKVVI 341 (343)
T ss_pred EEeHHHHHHHHHHHHcCCCCeeEEEE
Confidence 689999999999999874 4699987
No 105
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=98.65 E-value=2.7e-07 Score=65.56 Aligned_cols=92 Identities=16% Similarity=0.147 Sum_probs=68.6
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee--eee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV--EDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~--~~~ 79 (109)
++.++++++++||++.+|..+.. .++++..+..+..++.|+.... ....+.++++++++|.+++. ...
T Consensus 290 ~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~ll~~g~l~~~~~~~~ 359 (384)
T cd08265 290 IPQMEKSIAINGKIVYIGRAATT------VPLHLEVLQVRRAQIVGAQGHS----GHGIFPSVIKLMASGKIDMTKIITA 359 (384)
T ss_pred HHHHHHHHHcCCEEEEECCCCCC------CcccHHHHhhCceEEEEeeccC----CcchHHHHHHHHHcCCCChHHheEE
Confidence 35678899999999999975431 1234456777888888875321 13357889999999999864 445
Q ss_pred ecccchHHHHHHHhhcCCCcceEEE
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQLV 104 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvvv 104 (109)
+++++++.+|++.+.++ ..||+|+
T Consensus 360 ~~~~~~~~~a~~~~~~~-~~~kvvv 383 (384)
T cd08265 360 RFPLEGIMEAIKAASER-TDGKITI 383 (384)
T ss_pred EeeHHHHHHHHHHHhcC-CCceEEe
Confidence 68999999999997665 5799986
No 106
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.65 E-value=4e-07 Score=62.24 Aligned_cols=100 Identities=17% Similarity=0.229 Sum_probs=73.9
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeeccc---ccchHHHHHHHHHHHHcCceeeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDF---YHQYPKFLELVMRAIKEGKLVYVED 78 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~---~~~~~~~~~~~~~~~~~G~l~~~~~ 78 (109)
...++++++++|+++.+|..... . ...+....+.+++++.++..... .......+..+.+++.++.+.+...
T Consensus 226 ~~~~~~~l~~~g~~v~~g~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (328)
T cd08268 226 FAKLADALAPGGTLVVYGALSGE---P--TPFPLKAALKKSLTFRGYSLDEITLDPEARRRAIAFILDGLASGALKPVVD 300 (328)
T ss_pred HHHHHHhhccCCEEEEEEeCCCC---C--CCCchHHHhhcCCEEEEEecccccCCHHHHHHHHHHHHHHHHCCCCcCCcc
Confidence 35678899999999999975431 1 12334446889999998865432 1233455677777888998887766
Q ss_pred eecccchHHHHHHHhhcCCCcceEEEEe
Q 033914 79 IAEGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 79 ~~~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
.+++++++.++++.+.++...||+++++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~vv~~~ 328 (328)
T cd08268 301 RVFPFDDIVEAHRYLESGQQIGKIVVTP 328 (328)
T ss_pred cEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 6789999999999999888899999864
No 107
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=98.64 E-value=2.4e-07 Score=63.95 Aligned_cols=90 Identities=24% Similarity=0.220 Sum_probs=68.0
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
++.++++++++|+++.+|..... ...+++..++.++.++.|+..+. ++.+.++++++..++ ..+..++
T Consensus 236 ~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~--~~~~~~~ 303 (325)
T cd08264 236 WDLSLSVLGRGGRLVTFGTLTGG-----EVKLDLSDLYSKQISIIGSTGGT-----RKELLELVKIAKDLK--VKVWKTF 303 (325)
T ss_pred HHHHHHhhccCCEEEEEecCCCC-----CCccCHHHHhhcCcEEEEccCCC-----HHHHHHHHHHHHcCC--ceeEEEE
Confidence 46789999999999999974221 12456667778899999876442 456778888886554 4455668
Q ss_pred ccchHHHHHHHhhcCCCcceEE
Q 033914 82 GLEKAPSALVGIFTGQNVGKQL 103 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvv 103 (109)
+++++++|++.+.++...||++
T Consensus 304 ~~~~~~~a~~~~~~~~~~~kv~ 325 (325)
T cd08264 304 KLEEAKEALKELFSKERDGRIL 325 (325)
T ss_pred cHHHHHHHHHHHHcCCCccccC
Confidence 9999999999999888888863
No 108
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=98.62 E-value=5.6e-07 Score=62.34 Aligned_cols=95 Identities=17% Similarity=0.119 Sum_probs=66.9
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeec--c-cc--cc--hHHHHHHHHHHHHcCcee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAG--D-FY--HQ--YPKFLELVMRAIKEGKLV 74 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~--~-~~--~~--~~~~~~~~~~~~~~G~l~ 74 (109)
++.++++++++|+++.++... ..+...+..+++++.++... . +. .. ..+.+.++++++.+|.++
T Consensus 230 ~~~~~~~l~~~G~~v~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 300 (336)
T TIGR02817 230 FKEIVELLAPQGRFALIDDPA---------ELDISPFKRKSISLHWEFMFTRSMFQTADMIEQHHLLNRVARLVDAGKIR 300 (336)
T ss_pred HHHHHHHhccCCEEEEEcccc---------cccchhhhhcceEEEEEEeecccccchhhhhhhHHHHHHHHHHHHCCCee
Confidence 456789999999999885321 12334455566777764432 1 11 11 124678899999999998
Q ss_pred eeeeeec---ccchHHHHHHHhhcCCCcceEEEE
Q 033914 75 YVEDIAE---GLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 75 ~~~~~~~---~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
+.+..++ +++++.+||+.+.+++..||+++.
T Consensus 301 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~ 334 (336)
T TIGR02817 301 TTLAETFGTINAANLKRAHALIESGKARGKIVLE 334 (336)
T ss_pred ccchhccCCCCHHHHHHHHHHHHcCCccceEEEe
Confidence 7655444 479999999999999999999874
No 109
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=98.60 E-value=2.6e-07 Score=65.29 Aligned_cols=104 Identities=14% Similarity=0.140 Sum_probs=69.0
Q ss_pred HHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeeccc----ccchHHHHHHHHHHHHcCceeeeee
Q 033914 3 DAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDF----YHQYPKFLELVMRAIKEGKLVYVED 78 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~----~~~~~~~~~~~~~~~~~G~l~~~~~ 78 (109)
..++.++..+|+...+|..++...+... ...+..+........+.+..++ ....++.+..+.++++.|+|+|.++
T Consensus 239 ~~~~~~l~~~g~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ie~gkikp~i~ 317 (347)
T KOG1198|consen 239 TKSLSCLLKGGGGAYIGLVGDELANYKL-DDLWQSANGIKLYSLGLKGVNYRWLYFVPSAEYLKALVELIEKGKIKPVID 317 (347)
T ss_pred ccchhhhccCCceEEEEecccccccccc-ccchhhhhhhhheeeeeeccceeeeeecCCHHHHHHHHHHHHcCcccCCcc
Confidence 3466788889988888876654221110 1000001111111111111111 1234678999999999999999999
Q ss_pred eecccchHHHHHHHhhcCCCcceEEEEee
Q 033914 79 IAEGLEKAPSALVGIFTGQNVGKQLVVIA 107 (109)
Q Consensus 79 ~~~~l~~~~~A~~~l~~g~~~GKvvv~~~ 107 (109)
..|||+++.+||+.+.++...||+++.+.
T Consensus 318 ~~~p~~~~~ea~~~~~~~~~~GK~vl~~~ 346 (347)
T KOG1198|consen 318 SVYPFSQAKEAFEKLEKSHATGKVVLEKD 346 (347)
T ss_pred eeeeHHHHHHHHHHHhhcCCcceEEEEec
Confidence 99999999999999999889999999864
No 110
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=98.59 E-value=6.5e-07 Score=61.07 Aligned_cols=98 Identities=20% Similarity=0.171 Sum_probs=72.9
Q ss_pred HHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccc-cchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 3 DAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFY-HQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~-~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
+.++++++++|+++.+|..... .+.++..++.+..++.++...... ....+.+.++.+++.+|.+++.....+
T Consensus 227 ~~~~~~l~~~g~~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 300 (325)
T cd08253 227 AKDLDVLAPGGRIVVYGSGGLR------GTIPINPLMAKEASIRGVLLYTATPEERAAAAEAIAAGLADGALRPVIAREY 300 (325)
T ss_pred HHHHHhhCCCCEEEEEeecCCc------CCCChhHHHhcCceEEeeehhhcCHHHHHHHHHHHHHHHHCCCccCccccEE
Confidence 4567889999999999975411 123344456788888887643221 233456777888999999987766678
Q ss_pred ccchHHHHHHHhhcCCCcceEEEEe
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
++++++++++.+.++...||+++++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~kvv~~~ 325 (325)
T cd08253 301 PLEEAAAAHEAVESGGAIGKVVLDP 325 (325)
T ss_pred cHHHHHHHHHHHHcCCCcceEEEeC
Confidence 9999999999999998999999864
No 111
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.57 E-value=5.9e-07 Score=62.00 Aligned_cols=101 Identities=13% Similarity=0.064 Sum_probs=67.1
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccch----------HHHhhcceeeeeeeecccc----cchHHHHHHHHHH
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNL----------MQVVGKRIRMEGFLAGDFY----HQYPKFLELVMRA 67 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~----------~~~~~k~~~~~G~~~~~~~----~~~~~~~~~~~~~ 67 (109)
++.++++++.+|+++.+|.....+.. . ..++. ........++.++....+. +..++.+.+++++
T Consensus 216 ~~~~~~~l~~~g~~v~~g~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 293 (331)
T cd08273 216 YEESYAALAPGGTLVCYGGNSSLLQG-R-RSLAALGSLLARLAKLKLLPTGRRATFYYVWRDRAEDPKLFRQDLTELLDL 293 (331)
T ss_pred HHHHHHHhcCCCEEEEEccCCCCCCc-c-ccccchhhhhhhhhhhcceeccceeEEEeechhcccCHHHHHHHHHHHHHH
Confidence 35678999999999999976543110 0 00100 0122233333333321111 2245678899999
Q ss_pred HHcCceeeeeeeecccchHHHHHHHhhcCCCcceEEE
Q 033914 68 IKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLV 104 (109)
Q Consensus 68 ~~~G~l~~~~~~~~~l~~~~~A~~~l~~g~~~GKvvv 104 (109)
+++|.+++....+++++++++|++.+.+++..||+|+
T Consensus 294 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv~ 330 (331)
T cd08273 294 LAKGKIRPKIAKRLPLSEVAEAHRLLESGKVVGKIVL 330 (331)
T ss_pred HHCCCccCCcceEEcHHHHHHHHHHHHcCCCcceEEe
Confidence 9999998876667899999999999999888999986
No 112
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=98.56 E-value=8.9e-07 Score=60.08 Aligned_cols=89 Identities=19% Similarity=0.131 Sum_probs=68.0
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
...++++++++|+++.+|..... .. ....+++++..+..... .+.+.+++++++++.+++.+..++
T Consensus 221 ~~~~~~~l~~~g~~v~~g~~~~~--------~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 286 (309)
T cd05289 221 LARSLALVKPGGRLVSIAGPPPA--------EQ--AAKRRGVRAGFVFVEPD----GEQLAELAELVEAGKLRPVVDRVF 286 (309)
T ss_pred HHHHHHHHhcCcEEEEEcCCCcc--------hh--hhhhccceEEEEEeccc----HHHHHHHHHHHHCCCEEEeeccEE
Confidence 35678999999999999974321 11 33456677776654221 567888999999999988766678
Q ss_pred ccchHHHHHHHhhcCCCcceEEE
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLV 104 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv 104 (109)
+++++.+|++.+..++..||+++
T Consensus 287 ~~~~~~~a~~~~~~~~~~~kvv~ 309 (309)
T cd05289 287 PLEDAAEAHERLESGHARGKVVL 309 (309)
T ss_pred cHHHHHHHHHHHHhCCCCCcEeC
Confidence 99999999999998888899874
No 113
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=98.55 E-value=8.5e-07 Score=62.61 Aligned_cols=95 Identities=12% Similarity=0.081 Sum_probs=70.2
Q ss_pred HHHHHHhhc-cCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeee--ee
Q 033914 2 LDAVRLNMR-IRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYV--ED 78 (109)
Q Consensus 2 ~~~~l~~l~-~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~--~~ 78 (109)
++.++++++ ++|+++.+|..... ....++...+ .++.++.|++.+.+. ..+.+.++++++++|.+++. ..
T Consensus 267 ~~~~~~~l~~~~G~~v~~g~~~~~----~~~~~~~~~~-~~~~~l~g~~~~~~~--~~~~~~~~~~l~~~~~l~~~~~~~ 339 (365)
T cd05279 267 LKQALDATRLGGGTSVVVGVPPSG----TEATLDPNDL-LTGRTIKGTVFGGWK--SKDSVPKLVALYRQKKFPLDELIT 339 (365)
T ss_pred HHHHHHHhccCCCEEEEEecCCCC----CceeeCHHHH-hcCCeEEEEeccCCc--hHhHHHHHHHHHHcCCcchhHhee
Confidence 456789999 99999999975311 0123445555 788899998765543 24568889999999999864 55
Q ss_pred eecccchHHHHHHHhhcCCCcceEEE
Q 033914 79 IAEGLEKAPSALVGIFTGQNVGKQLV 104 (109)
Q Consensus 79 ~~~~l~~~~~A~~~l~~g~~~GKvvv 104 (109)
.+++++++++||+.+++++. .|+++
T Consensus 340 ~~~~l~~~~~a~~~~~~~~~-~~~~~ 364 (365)
T cd05279 340 HVLPFEEINDGFDLMRSGES-IRTIL 364 (365)
T ss_pred eeecHHHHHHHHHHHhCCCc-eeeee
Confidence 56799999999999988765 46665
No 114
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.55 E-value=1.2e-06 Score=59.99 Aligned_cols=95 Identities=20% Similarity=0.193 Sum_probs=70.7
Q ss_pred HHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecc--c----ccchHHHHHHHHHHHHcCceeee
Q 033914 3 DAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGD--F----YHQYPKFLELVMRAIKEGKLVYV 76 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~--~----~~~~~~~~~~~~~~~~~G~l~~~ 76 (109)
..++++++++|+++.+|.... .++.....+++++.++.... . .....+.+.++++++.++.+++.
T Consensus 225 ~~~~~~l~~~g~~v~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 295 (326)
T cd08272 225 DASFEAVALYGRVVSILGGAT---------HDLAPLSFRNATYSGVFTLLPLLTGEGRAHHGEILREAARLVERGQLRPL 295 (326)
T ss_pred HHHHHHhccCCEEEEEecCCc---------cchhhHhhhcceEEEEEcccccccccchhhHHHHHHHHHHHHHCCCcccc
Confidence 457889999999999987531 11222347888888876432 1 11234578888999999999876
Q ss_pred ee-eecccchHHHHHHHhhcCCCcceEEEEe
Q 033914 77 ED-IAEGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 77 ~~-~~~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
+. ..++++++.+|++.+.+++..||+++++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~ 326 (326)
T cd08272 296 LDPRTFPLEEAAAAHARLESGSARGKIVIDV 326 (326)
T ss_pred cccceecHHHHHHHHHHHHcCCcccEEEEEC
Confidence 54 6689999999999999888889999864
No 115
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=98.54 E-value=5.2e-07 Score=61.03 Aligned_cols=97 Identities=20% Similarity=0.172 Sum_probs=68.4
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeeccccc-------chHHHHHHHHHHHHcCcee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYH-------QYPKFLELVMRAIKEGKLV 74 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~-------~~~~~~~~~~~~~~~G~l~ 74 (109)
++.++++++++|+++.+|..... . ......+..+.+++.++....... ...+.++++++++.+|.++
T Consensus 173 ~~~~~~~l~~~g~~~~~g~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 246 (277)
T cd08255 173 LETALRLLRDRGRVVLVGWYGLK----P--LLLGEEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEEALDLLAEGRLE 246 (277)
T ss_pred HHHHHHHhcCCcEEEEEeccCCC----c--cccHHHHHhccCeEEeecccccccccccccccccccHHHHHHHHHcCCcc
Confidence 35678899999999999975542 1 111123555777888776532211 1125688899999999998
Q ss_pred eeeeeecccchHHHHHHHhhcC-CCcceEEE
Q 033914 75 YVEDIAEGLEKAPSALVGIFTG-QNVGKQLV 104 (109)
Q Consensus 75 ~~~~~~~~l~~~~~A~~~l~~g-~~~GKvvv 104 (109)
+.....++++++.+||+.+.++ ....|+++
T Consensus 247 ~~~~~~~~~~~~~~a~~~~~~~~~~~~k~~~ 277 (277)
T cd08255 247 ALITHRVPFEDAPEAYRLLFEDPPECLKVVL 277 (277)
T ss_pred ccccCccCHHHHHHHHHHHHcCCccceeeeC
Confidence 8766678999999999999877 33577764
No 116
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=98.53 E-value=7.7e-07 Score=62.12 Aligned_cols=93 Identities=15% Similarity=0.053 Sum_probs=64.9
Q ss_pred HHHHHHhhcc--CCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecc-------cccchHHHHHHHHHHHHcCc
Q 033914 2 LDAVRLNMRI--RGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGD-------FYHQYPKFLELVMRAIKEGK 72 (109)
Q Consensus 2 ~~~~l~~l~~--~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~-------~~~~~~~~~~~~~~~~~~G~ 72 (109)
+..+++++++ +|+++.+|.....+ .+....++..+.... ........+.++.+++++|+
T Consensus 235 ~~~~~~~l~~~~~g~~v~~g~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (339)
T cd08249 235 AQLCAEALGRSGGGKLVSLLPVPEET------------EPRKGVKVKFVLGYTVFGEIPEDREFGEVFWKYLPELLEEGK 302 (339)
T ss_pred HHHHHHHHhccCCCEEEEecCCCccc------------cCCCCceEEEEEeeeecccccccccchHHHHHHHHHHHHcCC
Confidence 4578899999 99999999755421 011122222222111 11223356778999999999
Q ss_pred eeeeeeeecc--cchHHHHHHHhhcCC-CcceEEEEe
Q 033914 73 LVYVEDIAEG--LEKAPSALVGIFTGQ-NVGKQLVVI 106 (109)
Q Consensus 73 l~~~~~~~~~--l~~~~~A~~~l~~g~-~~GKvvv~~ 106 (109)
+.+....+++ ++++++||+.+..++ ..||+|+++
T Consensus 303 l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~kvvv~~ 339 (339)
T cd08249 303 LKPHPVRVVEGGLEGVQEGLDLLRKGKVSGEKLVVRL 339 (339)
T ss_pred ccCCCceecCCcHHHHHHHHHHHHCCCccceEEEEeC
Confidence 9987656677 999999999999998 899999874
No 117
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=98.50 E-value=6.5e-07 Score=59.99 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=69.3
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeeccc----ccchHHHHHHHHHHHHcCceeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDF----YHQYPKFLELVMRAIKEGKLVYVE 77 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~----~~~~~~~~~~~~~~~~~G~l~~~~ 77 (109)
++.++++++++|+++.+|.....+ .. ..+. ..+.+.+++.++....+ .....+.+.++++++++|++++..
T Consensus 192 ~~~~~~~l~~~g~~v~~g~~~~~~--~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (293)
T cd05195 192 LRASWRCLAPFGRFVEIGKRDILS--NS--KLGM-RPFLRNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLKPLP 266 (293)
T ss_pred HHHHHHhcccCceEEEeecccccc--CC--ccch-hhhccCCeEEEEeHHHHhhhChHHHHHHHHHHHHHHHCCCcccCC
Confidence 466789999999999999765421 00 1112 22345566666543322 112345678899999999998877
Q ss_pred eeecccchHHHHHHHhhcCCCcceEEE
Q 033914 78 DIAEGLEKAPSALVGIFTGQNVGKQLV 104 (109)
Q Consensus 78 ~~~~~l~~~~~A~~~l~~g~~~GKvvv 104 (109)
..+++++++++|++.+.++...||+++
T Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~ivv 293 (293)
T cd05195 267 PTVVPSASEIDAFRLMQSGKHIGKVVL 293 (293)
T ss_pred CeeechhhHHHHHHHHhcCCCCceecC
Confidence 777899999999999999988899874
No 118
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.49 E-value=1.1e-06 Score=60.25 Aligned_cols=100 Identities=14% Similarity=0.085 Sum_probs=69.2
Q ss_pred HHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccc---cchHHHHHHHHHHHHcCceeeeeee
Q 033914 3 DAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFY---HQYPKFLELVMRAIKEGKLVYVEDI 79 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~---~~~~~~~~~~~~~~~~G~l~~~~~~ 79 (109)
..++++++++|+++.+|...... ...+. ...+..+++.+.+++..... ....+.+.++++++.++.+++....
T Consensus 223 ~~~~~~l~~~G~~v~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 298 (325)
T cd08271 223 AALAPTLAFNGHLVCIQGRPDAS---PDPPF-TRALSVHEVALGAAHDHGDPAAWQDLRYAGEELLELLAAGKLEPLVIE 298 (325)
T ss_pred HHHHHhhccCCEEEEEcCCCCCc---chhHH-hhcceEEEEEecccccccchhhHHHHHHHHHHHHHHHHCCCeeeccce
Confidence 45788999999999998644310 00011 11234556666655432210 2244567889999999999877666
Q ss_pred ecccchHHHHHHHhhcCCCcceEEEEe
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
+++++++.+|++.+.++...||+++++
T Consensus 299 ~~~~~~~~~a~~~~~~~~~~~kiv~~~ 325 (325)
T cd08271 299 VLPFEQLPEALRALKDRHTRGKIVVTI 325 (325)
T ss_pred EEcHHHHHHHHHHHHcCCccceEEEEC
Confidence 689999999999999988899999864
No 119
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=98.47 E-value=3.6e-07 Score=55.39 Aligned_cols=59 Identities=25% Similarity=0.356 Sum_probs=46.5
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHc
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKE 70 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 70 (109)
++.++++++++|+++++|..++. ..+++...++.|++++.|++.++ ++.++++++++++
T Consensus 72 ~~~~~~~l~~~G~~v~vg~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~~la~ 130 (130)
T PF00107_consen 72 LQEAIKLLRPGGRIVVVGVYGGD-----PISFNLMNLMFKEITIRGSWGGS-----PEDFQEALQLLAQ 130 (130)
T ss_dssp HHHHHHHEEEEEEEEEESSTSTS-----EEEEEHHHHHHTTEEEEEESSGG-----HHHHHHHHHHHH-
T ss_pred HHHHHHHhccCCEEEEEEccCCC-----CCCCCHHHHHhCCcEEEEEccCC-----HHHHHHHHHHhcC
Confidence 67899999999999999997731 23577889999999999998754 4566777777653
No 120
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=98.47 E-value=3.6e-07 Score=62.38 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=55.1
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcC--ceee--ee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEG--KLVY--VE 77 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G--~l~~--~~ 77 (109)
++.++++++++|+++.+|..... .+ .++++..++.|++++.|++.+. ++.+.+++++++++ ++++ .+
T Consensus 201 ~~~~~~~l~~~G~iv~~G~~~~~---~~-~~i~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~i 271 (280)
T TIGR03366 201 VRACLESLDVGGTAVLAGSVFPG---GP-VALDPEQVVRRWLTIRGVHNYE-----PRHLDQAVRFLAANGQRFPFEELV 271 (280)
T ss_pred HHHHHHHhcCCCEEEEeccCCCC---Cc-eeeCHHHHHhCCcEEEecCCCC-----HHHHHHHHHHHHhhCCCCCHHHHh
Confidence 56789999999999999975421 01 2456778899999999987432 35688899999985 4543 24
Q ss_pred eeecccchH
Q 033914 78 DIAEGLEKA 86 (109)
Q Consensus 78 ~~~~~l~~~ 86 (109)
+.+|||||+
T Consensus 272 t~~~~l~~~ 280 (280)
T TIGR03366 272 GKPFPLADV 280 (280)
T ss_pred hcccccccC
Confidence 455788874
No 121
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=98.44 E-value=1.7e-06 Score=58.02 Aligned_cols=98 Identities=15% Similarity=0.172 Sum_probs=68.3
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeeccc---ccchHHHHHHHHHHHHcCceeeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDF---YHQYPKFLELVMRAIKEGKLVYVED 78 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~---~~~~~~~~~~~~~~~~~G~l~~~~~ 78 (109)
++.++++++++|+++.+|.....+ . ...+... +.+++++.++....+ .....+.+.++++++++|++++...
T Consensus 188 ~~~~~~~l~~~g~~v~~g~~~~~~---~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T smart00829 188 LDASLRCLAPGGRFVEIGKRDIRD---N-SQLGMAP-FRRNVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVLRPLPV 262 (288)
T ss_pred HHHHHHhccCCcEEEEEcCcCCcc---c-cccchhh-hcCCceEEEEEHHHhhcChHHHHHHHHHHHHHHHCCCccCcCc
Confidence 356788999999999999754321 0 1222222 456777777654211 1122345778889999999887655
Q ss_pred eecccchHHHHHHHhhcCCCcceEEE
Q 033914 79 IAEGLEKAPSALVGIFTGQNVGKQLV 104 (109)
Q Consensus 79 ~~~~l~~~~~A~~~l~~g~~~GKvvv 104 (109)
..++++++++|++.+.+++..||+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~ivv 288 (288)
T smart00829 263 TVFPISDVEDAFRYMQQGKHIGKVVL 288 (288)
T ss_pred eEEcHHHHHHHHHHHhcCCCcceEeC
Confidence 66899999999999999888889874
No 122
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=98.39 E-value=7.3e-07 Score=60.41 Aligned_cols=98 Identities=12% Similarity=0.048 Sum_probs=64.8
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeec----ccccchHHHHHHHHHHHHcCceeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAG----DFYHQYPKFLELVMRAIKEGKLVYVE 77 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~----~~~~~~~~~~~~~~~~~~~G~l~~~~ 77 (109)
+..++++++++|+++.+|..+..+ .. ..++.. +.++.++..+... ...+...+.+.++++++++|.+++..
T Consensus 202 ~~~~~~~l~~~g~~v~~~~~~~~~--~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 276 (303)
T cd08251 202 IQKGLNCLAPGGRYVEIAMTALKS--AP--SVDLSV-LSNNQSFHSVDLRKLLLLDPEFIADYQAEMVSLVEEGELRPTV 276 (303)
T ss_pred HHHHHHHhccCcEEEEEeccCCCc--cC--ccChhH-hhcCceEEEEehHHhhhhCHHHHHHHHHHHHHHHHCCCccCCC
Confidence 345788999999999998754211 01 122222 2233333322211 11122345678889999999998776
Q ss_pred eeecccchHHHHHHHhhcCCCcceEEE
Q 033914 78 DIAEGLEKAPSALVGIFTGQNVGKQLV 104 (109)
Q Consensus 78 ~~~~~l~~~~~A~~~l~~g~~~GKvvv 104 (109)
...+++++++++++.+.+++..||+++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~iv~ 303 (303)
T cd08251 277 SRIFPFDDIGEAYRYLSDRENIGKVVV 303 (303)
T ss_pred ceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence 666899999999999999988999874
No 123
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=98.34 E-value=2.4e-06 Score=59.55 Aligned_cols=102 Identities=18% Similarity=0.143 Sum_probs=63.9
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCC-Cc--cccchHHHhhcceeeeeee------ecccccchHHHHHHHHHHHHcCc
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEK-SE--GVHNLMQVVGKRIRMEGFL------AGDFYHQYPKFLELVMRAIKEGK 72 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~-~~--~~~~~~~~~~k~~~~~G~~------~~~~~~~~~~~~~~~~~~~~~G~ 72 (109)
++.++++++++||++.+|..+..+... .. .+. ...+......+..+. +.. .....+.+.++++++.+|.
T Consensus 240 ~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 317 (350)
T cd08248 240 EKWALKLLKKGGTYVTLVSPLLKNTDKLGLVGGML-KSAVDLLKKNVKSLLKGSHYRWGF-FSPSGSALDELAKLVEDGK 317 (350)
T ss_pred HHHHHHHhccCCEEEEecCCcccccccccccchhh-hhHHHHHHHHHHHHhcCCCeeEEE-ECCCHHHHHHHHHHHhCCC
Confidence 457889999999999999653221000 00 000 001111111111110 000 1113567889999999999
Q ss_pred eeeeeeeecccchHHHHHHHhhcCCCcceEEEE
Q 033914 73 LVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 73 l~~~~~~~~~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
+.+.+...++++++++||+.+.++...||++++
T Consensus 318 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~ 350 (350)
T cd08248 318 IKPVIDKVFPFEEVPEAYEKVESGHARGKTVIK 350 (350)
T ss_pred EecccceeecHHHHHHHHHHHhcCCCceEEEeC
Confidence 988766678999999999999988888999863
No 124
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=98.25 E-value=6.7e-06 Score=57.53 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCceeeeeeeecccchHHHHHHHhhcCCCcceEEEEe
Q 033914 59 KFLELVMRAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 59 ~~~~~~~~~~~~G~l~~~~~~~~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
+.+.++++++.+|.+++....+++++++++||+.+++++..||+++++
T Consensus 305 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 352 (352)
T cd08247 305 DWIEKCAELIADGKVKPPIDSVYPFEDYKEAFERLKSNRAKGKVVIKV 352 (352)
T ss_pred HHHHHHHHHHhCCCeEeeeccEecHHHHHHHHHHHHcCCCCCcEEEeC
Confidence 467888999999999987666789999999999999999899999864
No 125
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=98.16 E-value=2.9e-05 Score=55.11 Aligned_cols=96 Identities=11% Similarity=0.070 Sum_probs=63.1
Q ss_pred HHHHHhh-ccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceee--eeee
Q 033914 3 DAVRLNM-RIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVY--VEDI 79 (109)
Q Consensus 3 ~~~l~~l-~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~--~~~~ 79 (109)
..++..+ +.+|+++.+|..... .+ ..++.. .+.++.++.|++.+.+.. ++.+.++++++.++.+++ .+..
T Consensus 275 ~~~~~~~~~~~G~~v~~g~~~~~---~~-~~~~~~-~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 347 (373)
T cd08299 275 KAALASCHEGYGVSVIVGVPPSS---QN-LSINPM-LLLTGRTWKGAVFGGWKS--KDSVPKLVADYMAKKFNLDPLITH 347 (373)
T ss_pred HHHHHhhccCCCEEEEEccCCCC---ce-eecCHH-HHhcCCeEEEEEecCCcc--HHHHHHHHHHHHcCCCCchhheee
Confidence 3445544 579999999985431 01 122222 345778999998765431 245566777777776543 3556
Q ss_pred ecccchHHHHHHHhhcCCCcceEEEEe
Q 033914 80 AEGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 80 ~~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
+++|+++.+||+.+.+++. .|+++.+
T Consensus 348 ~~~l~e~~~a~~~~~~~~~-~k~~~~~ 373 (373)
T cd08299 348 TLPFEKINEGFDLLRSGKS-IRTVLTF 373 (373)
T ss_pred eecHHHHHHHHHHHhCCCc-ceEEEeC
Confidence 6899999999999887764 5888753
No 126
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.12 E-value=3.5e-05 Score=52.65 Aligned_cols=91 Identities=27% Similarity=0.229 Sum_probs=59.9
Q ss_pred hhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeecccchHH
Q 033914 8 NMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAEGLEKAP 87 (109)
Q Consensus 8 ~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~l~~~~ 87 (109)
.++++|+++.+|...... .....+.+.. ......++...... . ..+.+.+++++++++++++....++++++++
T Consensus 229 ~l~~~g~~i~~g~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~--~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~ 302 (319)
T cd08267 229 ALKPGGRYVSVGGGPSGL-LLVLLLLPLT-LGGGGRRLKFFLAK--P--NAEDLEQLAELVEEGKLKPVIDSVYPLEDAP 302 (319)
T ss_pred ccCCCCEEEEeccccccc-cccccccchh-hccccceEEEEEec--C--CHHHHHHHHHHHHCCCeeeeeeeEEcHHHHH
Confidence 389999999999754321 0000000111 11222233333221 1 1567888999999999998777778999999
Q ss_pred HHHHHhhcCCCcceEEE
Q 033914 88 SALVGIFTGQNVGKQLV 104 (109)
Q Consensus 88 ~A~~~l~~g~~~GKvvv 104 (109)
+|++.+.++...||+++
T Consensus 303 ~a~~~~~~~~~~~~vvv 319 (319)
T cd08267 303 EAYRRLKSGRARGKVVI 319 (319)
T ss_pred HHHHHHhcCCCCCcEeC
Confidence 99999999888899874
No 127
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.96 E-value=2.2e-05 Score=56.73 Aligned_cols=93 Identities=8% Similarity=-0.020 Sum_probs=66.3
Q ss_pred HHHH-HHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHH--HHHHHHHcCce-eeee
Q 033914 2 LDAV-RLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLE--LVMRAIKEGKL-VYVE 77 (109)
Q Consensus 2 ~~~~-l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~--~~~~~~~~G~l-~~~~ 77 (109)
++.. ++++++||+++.+|... ..+++..+..+++++.|++.... .+ .+. +.+.++++|++ +...
T Consensus 271 i~~~~l~~mk~GgilvnvG~~~--------~eId~~~L~~~el~i~g~~~~~~--~~--~~~~g~aI~LLa~Grlvnl~~ 338 (413)
T cd00401 271 ITGEHFEQMKDGAIVCNIGHFD--------VEIDVKGLKENAVEVVNIKPQVD--RY--ELPDGRRIILLAEGRLVNLGC 338 (413)
T ss_pred HHHHHHhcCCCCcEEEEeCCCC--------CccCHHHHHhhccEEEEccCCcc--eE--EcCCcchhhhhhCcCCCCCcc
Confidence 3444 88999999999999531 24677788899999999875321 11 233 57789999999 5543
Q ss_pred eeec-------ccc-hHHHHHHHhhcCCC-cceEEEEe
Q 033914 78 DIAE-------GLE-KAPSALVGIFTGQN-VGKQLVVI 106 (109)
Q Consensus 78 ~~~~-------~l~-~~~~A~~~l~~g~~-~GKvvv~~ 106 (109)
..+| +|+ ++.++++.+.+++. .-|+++.+
T Consensus 339 ~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~p 376 (413)
T cd00401 339 ATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFLP 376 (413)
T ss_pred cCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEECC
Confidence 3344 588 99999999987654 35777655
No 128
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=97.90 E-value=5.8e-05 Score=52.08 Aligned_cols=60 Identities=20% Similarity=0.358 Sum_probs=46.9
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcC
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEG 71 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G 71 (109)
++.++++++++|+++.+|..++. + ..+++..++.|++++.|+++++ +++++++++++++|
T Consensus 247 ~~~~~~~l~~~G~~v~~g~~~~~----~-~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~~~~~~ 306 (306)
T cd08258 247 LEQALELLRKGGRIVQVGIFGPL----A-ASIDVERIIQKELSVIGSRSST-----PASWETALRLLASG 306 (306)
T ss_pred HHHHHHHhhcCCEEEEEcccCCC----C-cccCHHHHhhcCcEEEEEecCc-----hHhHHHHHHHHhcC
Confidence 45678899999999999986631 1 2356677889999999999764 45688899999876
No 129
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.97 E-value=0.0045 Score=42.19 Aligned_cols=90 Identities=11% Similarity=0.048 Sum_probs=51.3
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHc-Ccee--eeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKE-GKLV--YVED 78 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~-G~l~--~~~~ 78 (109)
++.+.++|++||++++.+..... +. ...+.+...+.+....... ...++.+++++ |-.. ....
T Consensus 166 l~~~~r~LkpGG~l~i~~~~~~~-------~~--~~~~~~~~~~~~~~~~~~~-----~~~e~~~~l~~aGf~~v~i~~~ 231 (272)
T PRK11873 166 FKEAFRVLKPGGRFAISDVVLRG-------EL--PEEIRNDAELYAGCVAGAL-----QEEEYLAMLAEAGFVDITIQPK 231 (272)
T ss_pred HHHHHHHcCCCcEEEEEEeeccC-------CC--CHHHHHhHHHHhccccCCC-----CHHHHHHHHHHCCCCceEEEec
Confidence 56788999999999998865431 11 1223333333322211111 13345556665 4222 2233
Q ss_pred eecccchHHHHHHHh--hcCCCcceEEEE
Q 033914 79 IAEGLEKAPSALVGI--FTGQNVGKQLVV 105 (109)
Q Consensus 79 ~~~~l~~~~~A~~~l--~~g~~~GKvvv~ 105 (109)
..++++++.++++.+ .+++..++.+..
T Consensus 232 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 260 (272)
T PRK11873 232 REYRIPDAREFLEDWGIAPGRQLDGYIVS 260 (272)
T ss_pred cceecccHHHHHHHhccccccccCceEEE
Confidence 346899999999999 666666665543
No 130
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.63 E-value=0.057 Score=35.80 Aligned_cols=56 Identities=23% Similarity=0.228 Sum_probs=38.3
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHH
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRA 67 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~ 67 (109)
++.++++++++|+++.+|...... . .......+.+++++.|+..+.+ +.+++++++
T Consensus 215 ~~~~~~~l~~~G~~v~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 270 (271)
T cd05188 215 LAQALRLLRPGGRIVVVGGTSGGP---P--LDDLRRLLFKELTIIGSTGGTR-----EDFEEALDL 270 (271)
T ss_pred HHHHHHhcccCCEEEEEccCCCCC---C--cccHHHHHhcceEEEEeecCCH-----HHHHHHHhh
Confidence 356788999999999999865431 1 1124467889999999986542 345555554
No 131
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.72 E-value=0.086 Score=39.48 Aligned_cols=71 Identities=11% Similarity=0.005 Sum_probs=47.0
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhh-cceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVG-KRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIA 80 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~-k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~ 80 (109)
.+++++.+++||+|+.+|...+.+.+ ...+...++. +++++.|++ +++.. ...+..+++.+|.+++....+
T Consensus 268 t~~~v~~mkpGgvIVdvg~~~GG~~e---~t~~~~~v~~~~gVti~Gv~--n~P~~---~p~~As~lla~~~i~l~~lIt 339 (509)
T PRK09424 268 TAEMVASMKPGSVIVDLAAENGGNCE---LTVPGEVVVTDNGVTIIGYT--DLPSR---LPTQSSQLYGTNLVNLLKLLC 339 (509)
T ss_pred HHHHHHhcCCCCEEEEEccCCCCCcc---cccCccceEeECCEEEEEeC--CCchh---HHHHHHHHHHhCCccHHHHhc
Confidence 48899999999999999985432211 1222334555 899999986 33322 223478899999887665444
No 132
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=84.46 E-value=0.99 Score=31.79 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=19.6
Q ss_pred HHHHHHhhccCCeEEEEccccc
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQ 23 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~ 23 (109)
+++++++|++|||++++-.+|=
T Consensus 227 L~~a~~~L~~gGRl~VIsFHSL 248 (314)
T COG0275 227 LEAALDLLKPGGRLAVISFHSL 248 (314)
T ss_pred HHHHHHhhCCCcEEEEEEecch
Confidence 6788999999999999998774
No 133
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=80.50 E-value=0.53 Score=33.98 Aligned_cols=46 Identities=7% Similarity=-0.145 Sum_probs=30.2
Q ss_pred HHHHHHHHHH---cCceeeeeeeecccchHHHHHHHhhcCCCcceEEEEee
Q 033914 60 FLELVMRAIK---EGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVVIA 107 (109)
Q Consensus 60 ~~~~~~~~~~---~G~l~~~~~~~~~l~~~~~A~~~l~~g~~~GKvvv~~~ 107 (109)
...++++.+. .||+-......++|+++.++++.++... ||+|+..+
T Consensus 348 ~~~~A~~~~~~~~~gKvvl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 396 (410)
T cd08238 348 AAAETTLNLPGIPGGKKLIYTQKPLPLTGIEELADKEPEEP--AAIVLENG 396 (410)
T ss_pred HHHHHHHHhhccCCceEEEECCCCCCCchhHhhHhhcCCCh--HHHHHhcC
Confidence 3444444544 2333333344579999999999998776 88887653
No 134
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=80.31 E-value=1.8 Score=30.48 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.4
Q ss_pred HHHHHHhhccCCeEEEEccccc
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQ 23 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~ 23 (109)
++++.++|++|||++++-.+|-
T Consensus 223 L~~~~~~L~~gGrl~VISfHSL 244 (305)
T TIGR00006 223 LQFAPNLLAPGGRLSIISFHSL 244 (305)
T ss_pred HHHHHHHhcCCCEEEEEecCcH
Confidence 5778899999999999998774
No 135
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=72.69 E-value=3.9 Score=28.68 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=19.3
Q ss_pred HHHHHHhhccCCeEEEEccccc
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQ 23 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~ 23 (109)
++++.++|++|||++++-.+|-
T Consensus 219 L~~~~~~L~~gGrl~visfHSl 240 (296)
T PRK00050 219 LEAALDLLKPGGRLAVISFHSL 240 (296)
T ss_pred HHHHHHHhcCCCEEEEEecCcH
Confidence 5678899999999999988774
No 136
>PF13065 DUF3928: Protein of unknown function (DUF3928)
Probab=71.42 E-value=15 Score=20.41 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHcCceeeeeeeecccchHHHHHHHh
Q 033914 57 YPKFLELVMRAIKEGKLVYVEDIAEGLEKAPSALVGI 93 (109)
Q Consensus 57 ~~~~~~~~~~~~~~G~l~~~~~~~~~l~~~~~A~~~l 93 (109)
..+.++++.++++-|++.... +-=|++.+||+..
T Consensus 57 ~~kalqeiarlvelgrftyvh---yrn~eie~afeav 90 (95)
T PF13065_consen 57 QQKALQEIARLVELGRFTYVH---YRNEEIEKAFEAV 90 (95)
T ss_pred HHHHHHHHHHHHHhcceeEEE---eccHHHHHHHHHH
Confidence 356789999999999998764 3457788888865
No 137
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=69.91 E-value=2.7 Score=26.21 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=17.2
Q ss_pred HHHHHHhhccCCeEEEEccccc
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQ 23 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~ 23 (109)
++++++.|++||.++++-..+.
T Consensus 75 l~~al~lL~~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 75 LEAALELLKPGGIITIVVYPGH 96 (140)
T ss_dssp HHHHHHHEEEEEEEEEEE--ST
T ss_pred HHHHHHhhccCCEEEEEEeCCC
Confidence 5789999999999998877543
No 138
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=68.37 E-value=2.7 Score=29.70 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.3
Q ss_pred HHHHHHhhccCCeEEEEccccc
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQ 23 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~ 23 (109)
++.+.++|++|||++++-.+|-
T Consensus 224 L~~a~~~L~~gGrl~VISFHSL 245 (310)
T PF01795_consen 224 LEAAPDLLKPGGRLVVISFHSL 245 (310)
T ss_dssp HHHHHHHEEEEEEEEEEESSHH
T ss_pred HHHHHHHhcCCcEEEEEEecch
Confidence 5678889999999999998875
No 139
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=66.44 E-value=4.6 Score=26.49 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=16.3
Q ss_pred CHHHHHHhhccCCeEEEEcc
Q 033914 1 MLDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 1 ~~~~~l~~l~~~Griv~~G~ 20 (109)
+++.+.+.|++|||+|.=-.
T Consensus 117 ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 117 ILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred HHHHHHHHcCcCCeEEEEee
Confidence 36788999999999987543
No 140
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=60.45 E-value=15 Score=21.48 Aligned_cols=29 Identities=21% Similarity=0.153 Sum_probs=21.9
Q ss_pred eeecccchHHHHHHHhhcCCCcceEEEEee
Q 033914 78 DIAEGLEKAPSALVGIFTGQNVGKQLVVIA 107 (109)
Q Consensus 78 ~~~~~l~~~~~A~~~l~~g~~~GKvvv~~~ 107 (109)
.+.||-+|+.++++.+.+.. .+++++++.
T Consensus 5 LIHYp~~d~~~~l~~La~~t-~~~~ifTfA 33 (97)
T PF07109_consen 5 LIHYPAEDAAQMLAHLASRT-RGSLIFTFA 33 (97)
T ss_pred EeccCHHHHHHHHHHHHHhc-cCcEEEEEC
Confidence 45578899999999876654 578888764
No 141
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=59.83 E-value=23 Score=22.08 Aligned_cols=55 Identities=20% Similarity=0.124 Sum_probs=32.4
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCc
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGK 72 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~ 72 (109)
++..|+..+++..++++|..+. ..+..+....++..|... ..+.+.+++.+.+|.
T Consensus 78 i~~iL~~~~~~~~vil~GpS~~---------~~P~~l~~~Gv~~v~g~~-------v~d~~~~~~~i~~Gg 132 (147)
T PF04016_consen 78 IDDILELARNAREVILYGPSAP---------LHPEALFDYGVTYVGGSR-------VVDPEKVLRAISEGG 132 (147)
T ss_dssp HHHHHHHTTTSSEEEEESCCGG---------S-GGGGCCTT-SEEEEEE-------ES-HHHHHHHHCTTS
T ss_pred HHHHHHhCccCCeEEEEecCch---------hhHHHHHhCCCCEEEEEE-------EeCHHHHHHHHHcCC
Confidence 5667777787888899986442 212234556676665542 124556667777764
No 142
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=58.23 E-value=8.7 Score=25.55 Aligned_cols=68 Identities=15% Similarity=0.066 Sum_probs=36.1
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeee
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDI 79 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~ 79 (109)
+..+-++|++||.+++||-..-.. ..++ +-..-+-..++-+.-.+| + .+++++.++.++..+.....+
T Consensus 124 f~~a~~~L~~gG~L~~YGPF~~~G---~~ts-~SN~~FD~sLr~rdp~~G-i-----RD~e~v~~lA~~~GL~l~~~~ 191 (204)
T PF06080_consen 124 FAGAARLLKPGGLLFLYGPFNRDG---KFTS-ESNAAFDASLRSRDPEWG-I-----RDIEDVEALAAAHGLELEEDI 191 (204)
T ss_pred HHHHHHhCCCCCEEEEeCCcccCC---EeCC-cHHHHHHHHHhcCCCCcC-c-----cCHHHHHHHHHHCCCccCccc
Confidence 556778899999999999644211 1111 111222233333322222 1 146677777777767655443
No 143
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=53.07 E-value=11 Score=26.13 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=16.0
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
+..+.++|+|||+++++-.
T Consensus 237 l~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 237 CKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred HHHHHHhcCCCCEEEEEEe
Confidence 5567889999999999865
No 144
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=52.88 E-value=61 Score=23.39 Aligned_cols=39 Identities=13% Similarity=0.049 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHHHcCceeeeeeeecccchHHHHHHHhh
Q 033914 56 QYPKFLELVMRAIKEGKLVYVEDIAEGLEKAPSALVGIF 94 (109)
Q Consensus 56 ~~~~~~~~~~~~~~~G~l~~~~~~~~~l~~~~~A~~~l~ 94 (109)
...+.+..+-+++++|++++.-....+-+++.+||....
T Consensus 142 piee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~ 180 (336)
T KOG1575|consen 142 PIEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAP 180 (336)
T ss_pred CHHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcC
Confidence 345788999999999999998777778888999988753
No 145
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=52.29 E-value=13 Score=25.32 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCceeeeeeeecccchH
Q 033914 61 LELVMRAIKEGKLVYVEDIAEGLEKA 86 (109)
Q Consensus 61 ~~~~~~~~~~G~l~~~~~~~~~l~~~ 86 (109)
..++.+++++..++..++.+||+..-
T Consensus 55 ~~~l~~~l~~~~i~~vIDATHPfA~~ 80 (249)
T PF02571_consen 55 EEGLAEFLRENGIDAVIDATHPFAAE 80 (249)
T ss_pred HHHHHHHHHhCCCcEEEECCCchHHH
Confidence 56777899999999999999998653
No 146
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=51.24 E-value=17 Score=24.87 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=16.3
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
.+.+.++++.+||++.||.
T Consensus 39 v~~~~~~l~~ggrl~~~Ga 57 (257)
T cd05007 39 VDAAAERLRAGGRLIYVGA 57 (257)
T ss_pred HHHHHHHHHcCCEEEEEcC
Confidence 3567788999999999996
No 147
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=49.48 E-value=18 Score=23.08 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=14.8
Q ss_pred HHHHHHhhccCCeEEEEc
Q 033914 2 LDAVRLNMRIRGRIAVCG 19 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G 19 (109)
++.+.++|++||++++..
T Consensus 129 l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 129 LDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHHHHccCCCEEEEEE
Confidence 456788999999999865
No 148
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=48.87 E-value=18 Score=22.86 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=15.0
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
++.+.+.|++||+++++-.
T Consensus 123 l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 123 LDELPEILKEGGRVQLIQS 141 (179)
T ss_pred HHhHHHhhCCCCEEEEEEe
Confidence 4566788999999988753
No 149
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=48.75 E-value=16 Score=24.93 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCceeeeeeeecccchHH
Q 033914 61 LELVMRAIKEGKLVYVEDIAEGLEKAP 87 (109)
Q Consensus 61 ~~~~~~~~~~G~l~~~~~~~~~l~~~~ 87 (109)
.+.+.+++.+..++..++.+|||...-
T Consensus 54 ~~~l~~~l~~~~i~~VIDATHPfA~~i 80 (248)
T PRK08057 54 AEGLAAYLREEGIDLVIDATHPYAAQI 80 (248)
T ss_pred HHHHHHHHHHCCCCEEEECCCccHHHH
Confidence 467788999999999999999986543
No 150
>PRK14967 putative methyltransferase; Provisional
Probab=48.33 E-value=15 Score=24.27 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=14.0
Q ss_pred HHHHHHhhccCCeEEEE
Q 033914 2 LDAVRLNMRIRGRIAVC 18 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~ 18 (109)
++.+.+.|++||+++++
T Consensus 142 l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 142 CDAAPALLAPGGSLLLV 158 (223)
T ss_pred HHHHHHhcCCCcEEEEE
Confidence 45678899999999876
No 151
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=48.05 E-value=11 Score=25.42 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=16.1
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
+....+.|+|||+++++-.
T Consensus 136 l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 136 LREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp HHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHcCCCeEEEEeec
Confidence 4677889999999998876
No 152
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=47.86 E-value=8.2 Score=26.56 Aligned_cols=20 Identities=10% Similarity=0.368 Sum_probs=16.0
Q ss_pred HHHHHhhccCCeEEEEcccc
Q 033914 3 DAVRLNMRIRGRIAVCGMIS 22 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~~~ 22 (109)
.....+|+|||+++++|...
T Consensus 183 ~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 183 RNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HHHHTTEEEEEEEEEEEESS
T ss_pred HHHHHHcCCCcEEEEEEEcC
Confidence 34566899999999999854
No 153
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=47.76 E-value=87 Score=21.98 Aligned_cols=45 Identities=24% Similarity=0.186 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCceeeeee--------eecccchHHHHHHHhhcCCCcceEEEEe
Q 033914 61 LELVMRAIKEGKLVYVED--------IAEGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 61 ~~~~~~~~~~G~l~~~~~--------~~~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
..++...+++|.++..+. ....=+++.+|.+.|...+ .|++++.-
T Consensus 220 ~~dI~~aia~g~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~n-VGRLlV~d 272 (294)
T COG2524 220 LSDIAKAIANGNLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNN-VGRLLVTD 272 (294)
T ss_pred HHHHHHHHHcCCccccHHHHhccCCceEcCchhHHHHHHHHHhcC-cceEEEEc
Confidence 467788899998876542 1134588999999987665 68988865
No 154
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=47.46 E-value=16 Score=24.93 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=14.0
Q ss_pred HHHHHHhhccCCeEEEE
Q 033914 2 LDAVRLNMRIRGRIAVC 18 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~ 18 (109)
++.+++++++||++|..
T Consensus 182 L~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 182 IDSAFDALKPGGVLVYS 198 (264)
T ss_pred HHHHHHhcCCCCEEEEE
Confidence 57788999999999643
No 155
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=47.03 E-value=18 Score=22.01 Aligned_cols=18 Identities=44% Similarity=0.721 Sum_probs=13.2
Q ss_pred HHHHHhhccCCeEEEEcc
Q 033914 3 DAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~ 20 (109)
+...++++.||++.+||.
T Consensus 26 ~~i~~~~~~gg~i~~~G~ 43 (138)
T PF13580_consen 26 DLIAEALRNGGRIFVCGN 43 (138)
T ss_dssp HHHHHHHHTT--EEEEES
T ss_pred HHHHHHHHCCCEEEEEcC
Confidence 445678999999999997
No 156
>PRK13938 phosphoheptose isomerase; Provisional
Probab=46.43 E-value=19 Score=23.66 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=15.9
Q ss_pred HHHHHhhccCCeEEEEccc
Q 033914 3 DAVRLNMRIRGRIAVCGMI 21 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~~ 21 (109)
+...++++.+|||.+||.-
T Consensus 36 ~~~~~~l~~g~rI~i~G~G 54 (196)
T PRK13938 36 DRLIAGYRAGARVFMCGNG 54 (196)
T ss_pred HHHHHHHHCCCEEEEEeCc
Confidence 4567789999999999973
No 157
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=46.35 E-value=21 Score=22.32 Aligned_cols=19 Identities=5% Similarity=0.233 Sum_probs=15.2
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
+....+.|+|||++++.=.
T Consensus 64 l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 64 MKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred HHHHHHHcCcCeEEEEEEC
Confidence 4567789999999987644
No 158
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=45.86 E-value=18 Score=23.40 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=13.7
Q ss_pred HHHHHHhhccCCeEEEE
Q 033914 2 LDAVRLNMRIRGRIAVC 18 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~ 18 (109)
++.+.++|++||++++.
T Consensus 128 l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 128 ISASWEIIKKGGRIVID 144 (198)
T ss_pred HHHHHHHcCCCcEEEEE
Confidence 56778889999999753
No 159
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=45.38 E-value=24 Score=24.77 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=15.6
Q ss_pred HHHHHhhccCCeEEEEcc
Q 033914 3 DAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~ 20 (109)
+.+.++++.+||+++||.
T Consensus 49 ~~~~~~l~~ggrl~~~Ga 66 (296)
T PRK12570 49 DKIVAAFKKGGRLIYMGA 66 (296)
T ss_pred HHHHHHHHcCCeEEEECC
Confidence 456778999999999996
No 160
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=45.04 E-value=16 Score=27.38 Aligned_cols=21 Identities=10% Similarity=0.292 Sum_probs=16.6
Q ss_pred CHHHHHHhhccCCeEEEEcccc
Q 033914 1 MLDAVRLNMRIRGRIAVCGMIS 22 (109)
Q Consensus 1 ~~~~~l~~l~~~Griv~~G~~~ 22 (109)
+++.+.++|++||++ +|.+++
T Consensus 224 iL~~A~~~LkpGG~L-VYSTCT 244 (470)
T PRK11933 224 LIESAFHALKPGGTL-VYSTCT 244 (470)
T ss_pred HHHHHHHHcCCCcEE-EEECCC
Confidence 367899999999988 565555
No 161
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=45.03 E-value=24 Score=24.65 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=15.2
Q ss_pred HHHHHhhccCCeEEEEcc
Q 033914 3 DAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~ 20 (109)
+.+.++++.+||++++|.
T Consensus 48 ~~~~~~l~~gGrl~~~G~ 65 (291)
T TIGR00274 48 EQIVQAFQQGGRLIYIGA 65 (291)
T ss_pred HHHHHHHhcCCEEEEECC
Confidence 456678899999999996
No 162
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=44.12 E-value=23 Score=22.99 Aligned_cols=17 Identities=12% Similarity=0.147 Sum_probs=14.5
Q ss_pred HHHHHHhhccCCeEEEE
Q 033914 2 LDAVRLNMRIRGRIAVC 18 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~ 18 (109)
++.+.+.|++||+++++
T Consensus 128 l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 128 VELCLPLLKPGGRFLAL 144 (187)
T ss_pred HHHHHHhcCCCeEEEEE
Confidence 46778899999999877
No 163
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=43.13 E-value=45 Score=22.13 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCceeeeeeee--cccchHHHHHHHhhcC
Q 033914 58 PKFLELVMRAIKEGKLVYVEDIA--EGLEKAPSALVGIFTG 96 (109)
Q Consensus 58 ~~~~~~~~~~~~~G~l~~~~~~~--~~l~~~~~A~~~l~~g 96 (109)
|.++-++++++++|.++|...+- -+|-.+.++-+.+.+.
T Consensus 129 PTAL~~ll~li~~~~~~PalVIg~PVGFV~A~ESKe~L~~~ 169 (198)
T PF02570_consen 129 PTALFELLELIEEGGVRPALVIGVPVGFVGAAESKEALMQS 169 (198)
T ss_dssp HHHHHHHHHHHHTTT-TTSEEEE---SSSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCCcEEEECCCcccCcHHHHHHHHhC
Confidence 77899999999999998865433 4788999998888765
No 164
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=43.12 E-value=24 Score=23.75 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=16.9
Q ss_pred HHHHHHhhccCCeEEEEcccc
Q 033914 2 LDAVRLNMRIRGRIAVCGMIS 22 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~ 22 (109)
+..+.+.|++||++++.|...
T Consensus 196 ~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 196 APDLARLLKPGGRLILSGILE 216 (250)
T ss_pred HHHHHHhcCCCcEEEEEECcH
Confidence 456778899999999988643
No 165
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=42.86 E-value=56 Score=22.63 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=18.2
Q ss_pred HHHHHHHHHcCceeeeeeeecccc
Q 033914 61 LELVMRAIKEGKLVYVEDIAEGLE 84 (109)
Q Consensus 61 ~~~~~~~~~~G~l~~~~~~~~~l~ 84 (109)
.+.+..++++..++..++.+||+.
T Consensus 55 ~e~l~~~l~e~~i~llIDATHPyA 78 (257)
T COG2099 55 AEGLAAFLREEGIDLLIDATHPYA 78 (257)
T ss_pred HHHHHHHHHHcCCCEEEECCChHH
Confidence 456677888888888888888764
No 166
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=41.03 E-value=20 Score=25.71 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=14.3
Q ss_pred CHHHHHHhhccCCeEEE
Q 033914 1 MLDAVRLNMRIRGRIAV 17 (109)
Q Consensus 1 ~~~~~l~~l~~~Griv~ 17 (109)
+++.+++.+++||++|.
T Consensus 270 iL~~a~~~lk~GG~LVY 286 (355)
T COG0144 270 ILAAALKLLKPGGVLVY 286 (355)
T ss_pred HHHHHHHhcCCCCEEEE
Confidence 36889999999999864
No 167
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=40.52 E-value=22 Score=26.15 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=14.2
Q ss_pred HHHHHHhhccCCeEEEE
Q 033914 2 LDAVRLNMRIRGRIAVC 18 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~ 18 (109)
++.+.+++++||++|..
T Consensus 367 L~~a~~~lkpgG~lvys 383 (434)
T PRK14901 367 LESLAPLLKPGGTLVYA 383 (434)
T ss_pred HHHHHHhcCCCCEEEEE
Confidence 67889999999999753
No 168
>COG2082 CobH Precorrin isomerase [Coenzyme metabolism]
Probab=39.80 E-value=74 Score=21.36 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCceeeeeeee--cccchHHHHHHHhhcCC
Q 033914 58 PKFLELVMRAIKEGKLVYVEDIA--EGLEKAPSALVGIFTGQ 97 (109)
Q Consensus 58 ~~~~~~~~~~~~~G~l~~~~~~~--~~l~~~~~A~~~l~~g~ 97 (109)
|.++-++++++++|+++|...+- -+|-++.++=+.+.+..
T Consensus 138 PTAL~~l~elie~~~~~palvIg~PVGFv~AaesKe~L~~~~ 179 (210)
T COG2082 138 PTALFELLELIEEGGIKPALVIGVPVGFVGAAESKEALRESP 179 (210)
T ss_pred HHHHHHHHHHHHccCCCCcEEEEcCCcccchHHHHHHHHhCC
Confidence 67899999999999999875543 37888888888776544
No 169
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=39.74 E-value=30 Score=23.59 Aligned_cols=19 Identities=5% Similarity=0.240 Sum_probs=15.4
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
+....+.|+|||+++++-.
T Consensus 165 l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 165 MQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred HHHHHHHcCcCcEEEEEEC
Confidence 4667889999999988744
No 170
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=39.64 E-value=21 Score=26.08 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=15.0
Q ss_pred HHHHHHhhccCCeEEEEcccc
Q 033914 2 LDAVRLNMRIRGRIAVCGMIS 22 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~ 22 (109)
+..++++|++||++|. .++|
T Consensus 279 L~rgl~lLk~GG~lVY-STCS 298 (375)
T KOG2198|consen 279 LRRGLRLLKVGGRLVY-STCS 298 (375)
T ss_pred HHHHHHHhcCCCEEEE-eccC
Confidence 5678999999999864 3444
No 171
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=39.45 E-value=28 Score=24.89 Aligned_cols=20 Identities=20% Similarity=0.081 Sum_probs=17.3
Q ss_pred HHHHHHhhccCCeEEEEccc
Q 033914 2 LDAVRLNMRIRGRIAVCGMI 21 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~ 21 (109)
+..++.+|++||+|+++|.-
T Consensus 95 l~~~~~~l~~g~~i~~~G~~ 114 (342)
T PRK09489 95 LMNLLSLLPVGTDIFVVGEN 114 (342)
T ss_pred HHHHHHhCCCCCEEEEEEec
Confidence 56788999999999999963
No 172
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=39.43 E-value=29 Score=22.81 Aligned_cols=17 Identities=29% Similarity=0.261 Sum_probs=14.1
Q ss_pred HHHHHHhhccCCeEEEE
Q 033914 2 LDAVRLNMRIRGRIAVC 18 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~ 18 (109)
++.+.+.|++||++++.
T Consensus 148 L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 148 LDMCRDVLAPGGSFVVK 164 (209)
T ss_pred HHHHHHHcCCCCEEEEE
Confidence 46677899999999884
No 173
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=38.98 E-value=31 Score=22.17 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=16.4
Q ss_pred HHHHHHhhccCCeEEEEccc
Q 033914 2 LDAVRLNMRIRGRIAVCGMI 21 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~ 21 (109)
++.+.+.|++||++++++..
T Consensus 126 l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 126 LREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred HHHHHHHcCCCcEEEEEEec
Confidence 45677889999999998763
No 174
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=38.81 E-value=35 Score=23.96 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=16.4
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
++.+.++++.+||+.+||.
T Consensus 52 v~~~~~~l~~ggrI~~~Ga 70 (299)
T PRK05441 52 VDAAAAALRQGGRLIYIGA 70 (299)
T ss_pred HHHHHHHHHCCCEEEEEcC
Confidence 4567789999999999996
No 175
>PRK07402 precorrin-6B methylase; Provisional
Probab=38.65 E-value=32 Score=22.12 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=14.8
Q ss_pred HHHHHHhhccCCeEEEEc
Q 033914 2 LDAVRLNMRIRGRIAVCG 19 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G 19 (109)
++.+.+.|++||++++.-
T Consensus 125 l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 125 LQAVWQYLKPGGRLVATA 142 (196)
T ss_pred HHHHHHhcCCCeEEEEEe
Confidence 466778899999998875
No 176
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=38.60 E-value=23 Score=22.36 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=14.4
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
+...+.++++||.|.++|-
T Consensus 88 L~~l~~~L~~g~~i~vVGE 106 (155)
T PF08468_consen 88 LANLLSHLPPGTEIFVVGE 106 (155)
T ss_dssp HHHHHTTS-TT-EEEEEEE
T ss_pred HHHHHHhCCCCCEEEEEec
Confidence 4667788999999999995
No 177
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=38.29 E-value=25 Score=25.77 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=14.2
Q ss_pred HHHHHHhhccCCeEEEE
Q 033914 2 LDAVRLNMRIRGRIAVC 18 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~ 18 (109)
++.+.++|++||++|..
T Consensus 351 L~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 351 LDAIWPLLKTGGTLVYA 367 (426)
T ss_pred HHHHHHhcCCCcEEEEE
Confidence 56788999999999853
No 178
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=38.17 E-value=36 Score=23.87 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=16.1
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
.+...+.++.|||++.+|+
T Consensus 50 v~~~~~~l~~GGRLiY~GA 68 (298)
T COG2103 50 VDIIAAALKQGGRLIYIGA 68 (298)
T ss_pred HHHHHHHHHcCCeEEEEcC
Confidence 3566778999999999997
No 179
>PF07655 Secretin_N_2: Secretin N-terminal domain; InterPro: IPR011514 This is a short domain found in bacterial type II/III secretory system proteins. The architecture of these proteins suggests that this family may be functionally analogous to IPR005644 from INTERPRO.; GO: 0009297 pilus assembly, 0019867 outer membrane
Probab=37.80 E-value=45 Score=19.22 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=19.2
Q ss_pred cccchHHHHHHHhhcCCCcceEEEEee
Q 033914 81 EGLEKAPSALVGIFTGQNVGKQLVVIA 107 (109)
Q Consensus 81 ~~l~~~~~A~~~l~~g~~~GKvvv~~~ 107 (109)
.-++++.++++.|......||.||..+
T Consensus 70 dfW~~L~~~l~~ilg~~~~Gr~vv~~~ 96 (98)
T PF07655_consen 70 DFWEDLQKTLQAILGTPGDGRSVVSNP 96 (98)
T ss_pred chHHHHHHHHHHHhCCCCCCCEEEeCC
Confidence 356888888888886555688777543
No 180
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=37.59 E-value=32 Score=24.36 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=17.0
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
+.+.++++.+||.|+++|-
T Consensus 56 La~ll~~~~~g~~i~v~g~ 74 (300)
T COG2813 56 LAQLLARLPPGGEIVVVGE 74 (300)
T ss_pred HHHHHhhCCCCCeEEEEec
Confidence 5678899999999999996
No 181
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=37.23 E-value=36 Score=23.57 Aligned_cols=21 Identities=10% Similarity=0.248 Sum_probs=16.7
Q ss_pred HHHHHHhhccCCeEEEEcccc
Q 033914 2 LDAVRLNMRIRGRIAVCGMIS 22 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~ 22 (109)
+....++|++||++++.|...
T Consensus 242 l~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 242 YPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred HHHHHHHcCCCcEEEEEeCcH
Confidence 456678999999999988643
No 182
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=37.15 E-value=20 Score=22.60 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=16.3
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
++.+.+.|+++|++.++..
T Consensus 123 i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 123 IEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp HHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHhccCCCEEEEEee
Confidence 5678899999999988775
No 183
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=36.95 E-value=35 Score=23.91 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=16.0
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
+..|.+.|+||||+.+.=.
T Consensus 197 l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 197 LREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred HHHHHHhcCCCcEEEEEEc
Confidence 5688999999999986655
No 184
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=36.67 E-value=36 Score=23.22 Aligned_cols=19 Identities=5% Similarity=0.148 Sum_probs=15.4
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
+..+.++|+|||++++...
T Consensus 139 l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 139 FEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HHHHHHHcCCCcEEEEEEe
Confidence 4567789999999998754
No 185
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=36.46 E-value=36 Score=16.44 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCceeeeeeee-cccch
Q 033914 60 FLELVMRAIKEGKLVYVEDIA-EGLEK 85 (109)
Q Consensus 60 ~~~~~~~~~~~G~l~~~~~~~-~~l~~ 85 (109)
..+++.+++++|.|.+...+- .++++
T Consensus 15 s~~el~~l~~~g~i~~~tlvw~~g~~~ 41 (45)
T PF14237_consen 15 SLEELRQLISSGEIDPDTLVWKEGMSD 41 (45)
T ss_pred CHHHHHHHHHcCCCCCCCeEeCCChhh
Confidence 367888899999998865442 24443
No 186
>KOG1774 consensus Small nuclear ribonucleoprotein E [RNA processing and modification]
Probab=36.44 E-value=18 Score=20.45 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=17.2
Q ss_pred ccchHHHHHHHhhcCCCcceEEEE
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
=|||+.+.+-.-.+++..||++++
T Consensus 53 VlD~aeev~~k~~~rk~lGRilLK 76 (88)
T KOG1774|consen 53 VLDDAEEVHSKTKSRKELGRILLK 76 (88)
T ss_pred hhcchhhccccccCCCccccEEEc
Confidence 356666666666667778999886
No 187
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=36.17 E-value=35 Score=23.23 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=16.8
Q ss_pred HHHHHHhhccCCeEEEEcccc
Q 033914 2 LDAVRLNMRIRGRIAVCGMIS 22 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~ 22 (109)
+....+.|+||||++++=...
T Consensus 139 L~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 139 LKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred HHHHHHhhcCCeEEEEEEcCC
Confidence 456778999999999987633
No 188
>PRK14968 putative methyltransferase; Provisional
Probab=35.91 E-value=36 Score=21.28 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=13.6
Q ss_pred HHHHHHhhccCCeEEEE
Q 033914 2 LDAVRLNMRIRGRIAVC 18 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~ 18 (109)
++++.+.|+++|+++++
T Consensus 131 i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 131 LDEVGRYLKPGGRILLL 147 (188)
T ss_pred HHHHHHhcCCCeEEEEE
Confidence 46778899999988765
No 189
>PRK04266 fibrillarin; Provisional
Probab=35.26 E-value=36 Score=22.83 Aligned_cols=17 Identities=12% Similarity=0.315 Sum_probs=13.6
Q ss_pred HHHHHHhhccCCeEEEE
Q 033914 2 LDAVRLNMRIRGRIAVC 18 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~ 18 (109)
++.+.+.|++||+++++
T Consensus 159 L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 159 IDNAEFFLKDGGYLLLA 175 (226)
T ss_pred HHHHHHhcCCCcEEEEE
Confidence 35666789999999886
No 190
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=34.82 E-value=39 Score=22.53 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=22.7
Q ss_pred cccchHHHHHHHhhcCCCcceEEEEee
Q 033914 81 EGLEKAPSALVGIFTGQNVGKQLVVIA 107 (109)
Q Consensus 81 ~~l~~~~~A~~~l~~g~~~GKvvv~~~ 107 (109)
.+.+|+.+||+...+..+.||-+|..+
T Consensus 75 ~ay~DV~~AF~~yL~~~n~GRPfILaG 101 (207)
T PF11288_consen 75 LAYSDVRAAFDYYLANYNNGRPFILAG 101 (207)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 588999999999998888898777654
No 191
>PRK05954 precorrin-8X methylmutase; Provisional
Probab=34.76 E-value=1e+02 Score=20.60 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCceeeeeeee--cccchHHHHHHHhhc
Q 033914 58 PKFLELVMRAIKEGKLVYVEDIA--EGLEKAPSALVGIFT 95 (109)
Q Consensus 58 ~~~~~~~~~~~~~G~l~~~~~~~--~~l~~~~~A~~~l~~ 95 (109)
|.++.++++++++|.++|...+- -+|-.+.|+=+.+.+
T Consensus 131 PTAL~~l~eli~~g~~~PalVIg~PVGFV~A~ESKe~L~~ 170 (203)
T PRK05954 131 PTALLALCQQIRAGRVKPSLVIGVPVGFVSVVEAKQALAQ 170 (203)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccCHHHHHHHHHh
Confidence 67899999999999988875433 378888877777654
No 192
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=34.68 E-value=37 Score=22.22 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=14.4
Q ss_pred HHHHHHhhccCCeEEEEc
Q 033914 2 LDAVRLNMRIRGRIAVCG 19 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G 19 (109)
++.+.+.|++||++++.-
T Consensus 134 l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 134 LREMYRVVKPGGKVVCLE 151 (231)
T ss_pred HHHHHHHcCcCeEEEEEE
Confidence 456788999999998754
No 193
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=34.16 E-value=39 Score=22.74 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=14.7
Q ss_pred HHHHHHhhccCCeEEEEc
Q 033914 2 LDAVRLNMRIRGRIAVCG 19 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G 19 (109)
++.+.+.|++||+++++-
T Consensus 132 l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 132 LQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HHHHHHHcCCCeEEEEEE
Confidence 567788999999998763
No 194
>PRK08286 cbiC cobalt-precorrin-8X methylmutase; Validated
Probab=34.16 E-value=95 Score=20.91 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCceeeeeeee--cccchHHHHHHHhhc
Q 033914 58 PKFLELVMRAIKEGKLVYVEDIA--EGLEKAPSALVGIFT 95 (109)
Q Consensus 58 ~~~~~~~~~~~~~G~l~~~~~~~--~~l~~~~~A~~~l~~ 95 (109)
|.++.++++++++|+++|...+- -+|-.+.|+=+.+.+
T Consensus 142 PTAL~~l~~li~~g~~~PalVIG~PVGFV~AaEsKe~L~~ 181 (214)
T PRK08286 142 PTALFRLLEMVEHGQLQVDAVVGVPVGFVGAAESKEALTE 181 (214)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEeCCccccHHHHHHHHHh
Confidence 77899999999999999875543 378888887777754
No 195
>PF14805 THDPS_N_2: Tetrahydrodipicolinate N-succinyltransferase N-terminal; PDB: 3EG4_A 3TDT_A 2TDT_A 1KGT_A 1TDT_A 1KGQ_A 3BXY_A 3GOS_A 3TK8_A.
Probab=34.02 E-value=47 Score=18.15 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=18.0
Q ss_pred chHHHHHHHHHHHHcCceeeeee
Q 033914 56 QYPKFLELVMRAIKEGKLVYVED 78 (109)
Q Consensus 56 ~~~~~~~~~~~~~~~G~l~~~~~ 78 (109)
+..+.+.++++++.+|+++.-.-
T Consensus 25 ~~~~av~~~i~~Ld~G~lRvAek 47 (70)
T PF14805_consen 25 ELRDAVEEVIELLDSGELRVAEK 47 (70)
T ss_dssp HHHHHHHHHHHHHHTTSS-SEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEEee
Confidence 45678999999999999987643
No 196
>PLN02244 tocopherol O-methyltransferase
Probab=33.83 E-value=40 Score=23.97 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=15.4
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
+....+.|++||+++++-.
T Consensus 206 l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 206 VQELARVAAPGGRIIIVTW 224 (340)
T ss_pred HHHHHHHcCCCcEEEEEEe
Confidence 4567889999999998754
No 197
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=33.57 E-value=34 Score=25.23 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=14.1
Q ss_pred HHHHHHhhccCCeEEEE
Q 033914 2 LDAVRLNMRIRGRIAVC 18 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~ 18 (109)
++.+.++|++||+++..
T Consensus 362 L~~a~~~LkpGG~lvys 378 (444)
T PRK14902 362 LESVAQYLKKGGILVYS 378 (444)
T ss_pred HHHHHHHcCCCCEEEEE
Confidence 56788999999999853
No 198
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=33.53 E-value=43 Score=22.18 Aligned_cols=20 Identities=5% Similarity=-0.129 Sum_probs=16.0
Q ss_pred HHHHHHhhccCCeEEEEccc
Q 033914 2 LDAVRLNMRIRGRIAVCGMI 21 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~ 21 (109)
++...++|++||++++++..
T Consensus 135 ~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 135 AAHLLALLPPGARQLLITLD 154 (213)
T ss_pred HHHHHHHcCCCCeEEEEEEE
Confidence 45678899999998888763
No 199
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=33.37 E-value=37 Score=23.13 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=16.6
Q ss_pred HHHHHHhhccCCeEEEEccccc
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQ 23 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~ 23 (109)
++..-+.|||||+++.+---.+
T Consensus 165 L~e~~rlLRpgG~iifiEHva~ 186 (252)
T KOG4300|consen 165 LNEVRRLLRPGGRIIFIEHVAG 186 (252)
T ss_pred HHHHHHhcCCCcEEEEEecccc
Confidence 4556678999999999875443
No 200
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=32.82 E-value=46 Score=21.33 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=13.6
Q ss_pred HHHHHHhhccCCeEEEE
Q 033914 2 LDAVRLNMRIRGRIAVC 18 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~ 18 (109)
++.+.++|++||+++++
T Consensus 125 ~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 125 LELTLNLLKVGGYFLAY 141 (181)
T ss_pred HHHHHHhcCCCCEEEEE
Confidence 35567889999999876
No 201
>PRK08285 cobH precorrin-8X methylmutase; Reviewed
Probab=32.44 E-value=1e+02 Score=20.60 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCceeeeeeee--cccchHHHHHHHhhc
Q 033914 58 PKFLELVMRAIKEGKLVYVEDIA--EGLEKAPSALVGIFT 95 (109)
Q Consensus 58 ~~~~~~~~~~~~~G~l~~~~~~~--~~l~~~~~A~~~l~~ 95 (109)
|.++.++++++++|+++|...+- -+|-.+.++=+.+.+
T Consensus 137 PTAL~~l~~li~~g~~~PalVIG~PVGFV~a~ESKe~L~~ 176 (208)
T PRK08285 137 PTALFRLLEMLDAGAPRPAAILGFPVGFVGAAESKDALAA 176 (208)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeCCccccHHHHHHHHHh
Confidence 67899999999999988865433 478888877777655
No 202
>PRK08317 hypothetical protein; Provisional
Probab=31.15 E-value=52 Score=21.26 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.0
Q ss_pred HHHHHHhhccCCeEEEEc
Q 033914 2 LDAVRLNMRIRGRIAVCG 19 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G 19 (109)
+....++|++||++++..
T Consensus 107 l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 107 LAEIARVLRPGGRVVVLD 124 (241)
T ss_pred HHHHHHHhcCCcEEEEEe
Confidence 466788999999998875
No 203
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=30.97 E-value=39 Score=24.81 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=13.5
Q ss_pred HHHHHHhhccCCeEEE
Q 033914 2 LDAVRLNMRIRGRIAV 17 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~ 17 (109)
++.+.+.|++||+++.
T Consensus 355 L~~a~~~LkpGG~lvy 370 (427)
T PRK10901 355 LDALWPLLKPGGTLLY 370 (427)
T ss_pred HHHHHHhcCCCCEEEE
Confidence 5678889999999974
No 204
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=30.20 E-value=51 Score=20.92 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=14.3
Q ss_pred HHHHHHhhccCCeEEEEc
Q 033914 2 LDAVRLNMRIRGRIAVCG 19 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G 19 (109)
++.+.+.|++||++++..
T Consensus 114 l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 114 IDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred HHHHHHhcCCCeEEEEEE
Confidence 466788999999997753
No 205
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=30.05 E-value=1.1e+02 Score=17.21 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=19.2
Q ss_pred HHHHHHHcCceeeeeeeecccchHH
Q 033914 63 LVMRAIKEGKLVYVEDIAEGLEKAP 87 (109)
Q Consensus 63 ~~~~~~~~G~l~~~~~~~~~l~~~~ 87 (109)
++.+++++|+++..+...++.++..
T Consensus 51 ~i~~~i~~~~IdlVIn~~~~~~~~~ 75 (95)
T PF02142_consen 51 QIMDLIKNGKIDLVINTPYPFSDQE 75 (95)
T ss_dssp HHHHHHHTTSEEEEEEE--THHHHH
T ss_pred HHHHHHHcCCeEEEEEeCCCCcccc
Confidence 5888999999998888777777665
No 206
>PRK05575 cbiC precorrin-8X methylmutase; Validated
Probab=29.92 E-value=1.2e+02 Score=20.23 Aligned_cols=38 Identities=29% Similarity=0.153 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCceeeeeeee--cccchHHHHHHHhhc
Q 033914 58 PKFLELVMRAIKEGKLVYVEDIA--EGLEKAPSALVGIFT 95 (109)
Q Consensus 58 ~~~~~~~~~~~~~G~l~~~~~~~--~~l~~~~~A~~~l~~ 95 (109)
|.++.++++++++|.++|...+- -+|-.+.|+=+.+.+
T Consensus 136 PTAL~~l~~li~~g~~~PalVIG~PVGFV~A~ESKe~L~~ 175 (204)
T PRK05575 136 PTALYKLKELIKEGKANPKFIIAVPVGFVGAAESKEELEK 175 (204)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeCCccccHHHHHHHHHh
Confidence 77899999999999888765433 478888888777754
No 207
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=29.79 E-value=54 Score=19.17 Aligned_cols=14 Identities=14% Similarity=0.164 Sum_probs=12.0
Q ss_pred HHHHHhhccCCeEE
Q 033914 3 DAVRLNMRIRGRIA 16 (109)
Q Consensus 3 ~~~l~~l~~~Griv 16 (109)
.+|.++|+++|+++
T Consensus 65 ~~A~rAL~~NG~i~ 78 (100)
T PF05172_consen 65 LSAQRALQKNGTIF 78 (100)
T ss_dssp HHHHHHHTTTTEEE
T ss_pred HHHHHHHHhCCeEE
Confidence 46889999999994
No 208
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=29.60 E-value=51 Score=23.68 Aligned_cols=19 Identities=16% Similarity=0.345 Sum_probs=15.8
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
++.+.+.|++||++++.+.
T Consensus 198 L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 198 IKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred HHHHHHhcCCCcEEEEEEe
Confidence 5678889999999988764
No 209
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=29.55 E-value=43 Score=24.46 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=16.4
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
+..+.++|++||++.+++.
T Consensus 323 ~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 323 FHHARRCLKINGELYIVAN 341 (378)
T ss_pred HHHHHHhcccCCEEEEEEe
Confidence 5678889999999999974
No 210
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=29.48 E-value=54 Score=21.51 Aligned_cols=16 Identities=6% Similarity=0.119 Sum_probs=12.8
Q ss_pred HHHHHhhccCCeEEEE
Q 033914 3 DAVRLNMRIRGRIAVC 18 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~ 18 (109)
+..++.|++||++++.
T Consensus 160 ~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 160 KPLIEQLKDGGIMVIP 175 (212)
T ss_pred HHHHHhhCCCcEEEEE
Confidence 4567889999998774
No 211
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=29.46 E-value=57 Score=21.22 Aligned_cols=19 Identities=5% Similarity=0.333 Sum_probs=15.5
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
++.+.+.|+|||++++...
T Consensus 87 l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 87 FSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHHHHHcCCCCEEEEEEc
Confidence 4567789999999998765
No 212
>PRK06264 cbiC precorrin-8X methylmutase; Validated
Probab=29.44 E-value=1.3e+02 Score=20.28 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCceeeeeeee--cccchHHHHHHHhhc
Q 033914 58 PKFLELVMRAIKEGKLVYVEDIA--EGLEKAPSALVGIFT 95 (109)
Q Consensus 58 ~~~~~~~~~~~~~G~l~~~~~~~--~~l~~~~~A~~~l~~ 95 (109)
|.++.++++++++|.++|...+- -+|-.+.|.=+.+.+
T Consensus 137 PTAL~~l~~li~~g~~~PalVIg~PVGFV~A~ESKe~L~~ 176 (210)
T PRK06264 137 PTALFEVIRLVKEEGIKPKLVVGVPVGFVKAAESKEALRN 176 (210)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCCccccHHHHHHHHHh
Confidence 77899999999999998865443 378888877777654
No 213
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=29.41 E-value=31 Score=20.69 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=13.4
Q ss_pred HHHHHHhhccCCeEEEE
Q 033914 2 LDAVRLNMRIRGRIAVC 18 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~ 18 (109)
+....++|+|||++++=
T Consensus 27 f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 27 FRRIYSLLRPGGILILE 43 (110)
T ss_dssp HHHHHHHEEEEEEEEEE
T ss_pred HHHHHHhhCCCCEEEEe
Confidence 45677889999999764
No 214
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=29.14 E-value=47 Score=22.31 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=16.6
Q ss_pred HHHHHHhhccCCeEEEEcccc
Q 033914 2 LDAVRLNMRIRGRIAVCGMIS 22 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~ 22 (109)
+....++|++||.+++.....
T Consensus 147 l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 147 LDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred HHHHHHhcCCCCEEEEEEecC
Confidence 466778999999999986433
No 215
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=29.06 E-value=45 Score=24.64 Aligned_cols=17 Identities=6% Similarity=0.010 Sum_probs=13.8
Q ss_pred HHHHHHhhccCCeEEEE
Q 033914 2 LDAVRLNMRIRGRIAVC 18 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~ 18 (109)
++.+.+.|++||+++..
T Consensus 349 L~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 349 VSQAWKLLEKGGILLYS 365 (431)
T ss_pred HHHHHHhcCCCCEEEEE
Confidence 67888999999997543
No 216
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=28.82 E-value=32 Score=22.88 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=14.1
Q ss_pred HHHHHHhhccCCeEEEEc
Q 033914 2 LDAVRLNMRIRGRIAVCG 19 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G 19 (109)
++...++|+|||++|++-
T Consensus 129 l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 129 LDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp HHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHhCCCCEEEEEE
Confidence 355677899999998854
No 217
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=28.73 E-value=50 Score=18.21 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=17.2
Q ss_pred HHHHHH--hhccCCeEEEEcccccc
Q 033914 2 LDAVRL--NMRIRGRIAVCGMISQY 24 (109)
Q Consensus 2 ~~~~l~--~l~~~Griv~~G~~~~~ 24 (109)
+..+++ .+++|.+++++|.-+|.
T Consensus 57 L~~~~~~g~~~~Gd~vl~~~~G~G~ 81 (90)
T PF08541_consen 57 LADALEEGRIKPGDRVLLVGFGAGF 81 (90)
T ss_dssp HHHHHHTTSSCTTEEEEEEEEETTT
T ss_pred HHHHHHcCCCCCCCEEEEEEEEhhh
Confidence 345566 68899999999986654
No 218
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=28.68 E-value=34 Score=22.71 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=18.3
Q ss_pred HHHHHHhhccC--CeEEEEccccc
Q 033914 2 LDAVRLNMRIR--GRIAVCGMISQ 23 (109)
Q Consensus 2 ~~~~l~~l~~~--Griv~~G~~~~ 23 (109)
+..+.++|+|| |||+++-..-.
T Consensus 180 L~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 180 LRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp HHHHHHHSEECTTEEEEEEEEEEC
T ss_pred HHHHHHHhCCCCCCeEEEEeeccC
Confidence 56788899988 99999987643
No 219
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=28.42 E-value=69 Score=20.85 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=15.8
Q ss_pred HHHHhhccCCeEEEEcccc
Q 033914 4 AVRLNMRIRGRIAVCGMIS 22 (109)
Q Consensus 4 ~~l~~l~~~Griv~~G~~~ 22 (109)
..++++..|+++..||.-+
T Consensus 33 ~i~~~l~~G~Kvl~cGNGg 51 (176)
T COG0279 33 LLVQSLLNGNKVLACGNGG 51 (176)
T ss_pred HHHHHHHcCCEEEEECCCc
Confidence 4567899999999999843
No 220
>PRK13937 phosphoheptose isomerase; Provisional
Probab=28.41 E-value=67 Score=20.67 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=16.6
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
.+.+.++++.++||.++|.
T Consensus 28 a~~i~~~l~~a~rI~i~G~ 46 (188)
T PRK13937 28 AEALIEALANGGKILLCGN 46 (188)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 3567889999999999997
No 221
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=28.23 E-value=66 Score=20.74 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=13.1
Q ss_pred HHHHHHhhccCCeEEEEc
Q 033914 2 LDAVRLNMRIRGRIAVCG 19 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G 19 (109)
+....++|++||+++++-
T Consensus 116 l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 116 IANMQAHTRPGGYNLIVA 133 (195)
T ss_pred HHHHHHHhCCCcEEEEEE
Confidence 456678899999965543
No 222
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=28.21 E-value=2e+02 Score=19.55 Aligned_cols=91 Identities=15% Similarity=0.061 Sum_probs=45.2
Q ss_pred HHHHHHhhccCCeEEEEccccccCCCCCccccchHHHhhcceeeeeeeecccccchHHHHHHHHHHHHcCceeeeeeeec
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQYNLEKSEGVHNLMQVVGKRIRMEGFLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAE 81 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~~~k~~~~~G~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 81 (109)
++++.+.+....+|.++|.-.. ..+..-+...+...|.......+ ..........+.++.+-..+....
T Consensus 118 l~~~~~~i~~a~~I~i~G~G~s---------~~~A~~~~~~l~~~g~~~~~~~d--~~~~~~~~~~~~~~Dv~I~iS~sg 186 (278)
T PRK11557 118 LHECVTMLRSARRIILTGIGAS---------GLVAQNFAWKLMKIGINAVAERD--MHALLATVQALSPDDLLLAISYSG 186 (278)
T ss_pred HHHHHHHHhcCCeEEEEecChh---------HHHHHHHHHHHhhCCCeEEEcCC--hHHHHHHHHhCCCCCEEEEEcCCC
Confidence 5678889999999999997332 11222333333344443321111 112223334555555433333222
Q ss_pred ccchHHHHHHHhhcCCCcceEEEE
Q 033914 82 GLEKAPSALVGIFTGQNVGKQLVV 105 (109)
Q Consensus 82 ~l~~~~~A~~~l~~g~~~GKvvv~ 105 (109)
.-.++.++.+.....+ -|++..
T Consensus 187 ~~~~~~~~~~~ak~~g--a~iI~I 208 (278)
T PRK11557 187 ERRELNLAADEALRVG--AKVLAI 208 (278)
T ss_pred CCHHHHHHHHHHHHcC--CCEEEE
Confidence 3456667777665543 245443
No 223
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=28.14 E-value=51 Score=22.08 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=15.1
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
++.+++++++||.+++=..
T Consensus 161 ~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 161 HEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred HHHHHHhcCCCeEEEEEcC
Confidence 5678899999999876543
No 224
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=27.85 E-value=3.1e+02 Score=21.79 Aligned_cols=73 Identities=21% Similarity=0.207 Sum_probs=41.5
Q ss_pred hHHHhhcceeeee-eeecccccchHHHHHHHHHHHHcCceeeeeeeecccchHHHHHHHhhcCCCcceEEEEeec
Q 033914 35 LMQVVGKRIRMEG-FLAGDFYHQYPKFLELVMRAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVVIAR 108 (109)
Q Consensus 35 ~~~~~~k~~~~~G-~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~l~~~~~A~~~l~~g~~~GKvvv~~~~ 108 (109)
+.+.+.|-..+.| +. ..|.....-+++.++...-.|..-..-...-++.-+.+.|..+...+..|=+|+...|
T Consensus 45 i~e~la~~~~~l~~vy-~e~s~NEkvA~e~a~GA~~~G~ral~~mKhVGlNvAsDpl~s~ay~Gv~GGlviv~aD 118 (640)
T COG4231 45 LIETLAKAKKILGDVY-FEWSLNEKVALETAAGASYAGVRALVTMKHVGLNVASDPLMSLAYAGVTGGLVIVVAD 118 (640)
T ss_pred HHHHHHHhhhhcCcEE-EEecccHHHHHHHHHHhhhcCceeeEEecccccccchhhhhhhhhcCccccEEEEEcc
Confidence 3344555444443 32 2333212234555666666675444434444899888999888765566777776654
No 225
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=27.81 E-value=64 Score=23.33 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=13.4
Q ss_pred HHHhh-ccCCeEEEEcccc
Q 033914 5 VRLNM-RIRGRIAVCGMIS 22 (109)
Q Consensus 5 ~l~~l-~~~Griv~~G~~~ 22 (109)
.++.. +.||||+.+|+.+
T Consensus 241 ~i~~~k~~GgRIiaVGTTs 259 (348)
T COG0809 241 AINAAKARGGRIIAVGTTS 259 (348)
T ss_pred HHHHHHHcCCeEEEEcchh
Confidence 34444 7789999999866
No 226
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=27.44 E-value=49 Score=24.44 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=14.7
Q ss_pred HHHHHHhhccCCeEEEEc
Q 033914 2 LDAVRLNMRIRGRIAVCG 19 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G 19 (109)
+..+.+++++||+++..-
T Consensus 360 L~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 360 LDHAASLLKPGGVLVYAT 377 (445)
T ss_pred HHHHHHhcCCCcEEEEEe
Confidence 567888999999997743
No 227
>PRK05953 precorrin-8X methylmutase; Validated
Probab=27.37 E-value=1.4e+02 Score=20.04 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCceeeeeeee--cccchHHHHHHHhhc
Q 033914 58 PKFLELVMRAIKEGKLVYVEDIA--EGLEKAPSALVGIFT 95 (109)
Q Consensus 58 ~~~~~~~~~~~~~G~l~~~~~~~--~~l~~~~~A~~~l~~ 95 (109)
|.++-++++++++|..+|...+- -+|-.+.++=+.|.+
T Consensus 129 PTAL~~l~~li~~g~~~PalVIG~PVGFV~AaESKe~L~~ 168 (208)
T PRK05953 129 QTALTALVELVEAEEIRPALVIATPAGFIDADDAKERLQD 168 (208)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCcccCcHHHHHHHHh
Confidence 67899999999999888865433 478888888888764
No 228
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=27.02 E-value=68 Score=20.84 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=14.1
Q ss_pred HHHHHHhhccCCeEEEEc
Q 033914 2 LDAVRLNMRIRGRIAVCG 19 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G 19 (109)
++.+.+.|+++|+++++-
T Consensus 139 l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 139 LALYARKLKPGGEIHFAT 156 (202)
T ss_pred HHHHHHHcCCCCEEEEEc
Confidence 456677899999998764
No 229
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=26.99 E-value=57 Score=22.61 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=16.0
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
++.+-++|++||++++|--
T Consensus 178 le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 178 LEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred HHHHHHHhCCCcEEEEEcC
Confidence 5778889999999998853
No 230
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=26.97 E-value=34 Score=20.62 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=14.5
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
++...++|+|||.+++.=.
T Consensus 98 l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 98 LKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp HHHHHHCEEEEEEEEEEEE
T ss_pred HHHHHHhcCCCCEEEEEEc
Confidence 4566778999999977653
No 231
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.88 E-value=65 Score=23.52 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=18.1
Q ss_pred HHHHHHhhccCCeEEEEccccc
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQ 23 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~ 23 (109)
+..+++.|.++||++.+|..+.
T Consensus 106 ~~~~l~~l~~~griv~i~s~~~ 127 (450)
T PRK08261 106 FHPVLRSLAPCGRVVVLGRPPE 127 (450)
T ss_pred HHHHHHhccCCCEEEEEccccc
Confidence 4567888999999999998655
No 232
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=26.82 E-value=2.2e+02 Score=19.70 Aligned_cols=48 Identities=19% Similarity=0.054 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCceeeeeeeecccchHHHHHHHhhcCCCcceEEEEe
Q 033914 58 PKFLELVMRAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 58 ~~~~~~~~~~~~~G~l~~~~~~~~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
++.+.++.+++++-.++|.... |...++..+...+..|--.+.+.+.+
T Consensus 125 ~~~~~~~~~~~~e~Gi~pe~ev-~d~~~l~~~~~l~~~G~l~~p~~~~~ 172 (272)
T PF05853_consen 125 PADARELARRMRERGIKPEIEV-FDPGHLRNARRLIEKGLLPGPLLVNF 172 (272)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-SSHHHHHHHHHHHHTTSS-SSEEEEE
T ss_pred HHHHHHHHHHHHHcCCeEEEEE-EcHHHHHHHHHHHHCCCCCCCeEEEE
Confidence 5678888899999999999875 67788888888777776556555543
No 233
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=26.64 E-value=48 Score=23.48 Aligned_cols=18 Identities=17% Similarity=0.421 Sum_probs=14.5
Q ss_pred HHHHHHhhccCCeEEEEc
Q 033914 2 LDAVRLNMRIRGRIAVCG 19 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G 19 (109)
+....++|++||++++--
T Consensus 208 L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 208 LKQLKHQLVIKGELVLET 225 (314)
T ss_pred HHHHHHhcCCCCEEEEEE
Confidence 566778999999998753
No 234
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=26.32 E-value=47 Score=21.51 Aligned_cols=15 Identities=40% Similarity=0.663 Sum_probs=12.4
Q ss_pred hhccCCeEEEEcccc
Q 033914 8 NMRIRGRIAVCGMIS 22 (109)
Q Consensus 8 ~l~~~Griv~~G~~~ 22 (109)
-+++.+++|+||..+
T Consensus 5 kmGk~~kVvVcG~k~ 19 (198)
T KOG3883|consen 5 KMGKVCKVVVCGMKS 19 (198)
T ss_pred hhCcceEEEEECCcc
Confidence 478889999999755
No 235
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=26.26 E-value=83 Score=25.70 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=22.5
Q ss_pred hhccCCeEEEEccccccCCCCCccccchHHH----hhcceeeeeeee
Q 033914 8 NMRIRGRIAVCGMISQYNLEKSEGVHNLMQV----VGKRIRMEGFLA 50 (109)
Q Consensus 8 ~l~~~Griv~~G~~~~~~~~~~~~~~~~~~~----~~k~~~~~G~~~ 50 (109)
.|+.|.+||+||+ .|+ . .-.++.+ -.|++++.|-++
T Consensus 725 ~L~eGD~IvvcG~-~Gp---I---vTtIRaLLtP~PlkElRVk~~Y~ 764 (1064)
T KOG1144|consen 725 ELHEGDQIVVCGL-QGP---I---VTTIRALLTPQPLKELRVKGTYV 764 (1064)
T ss_pred eeccCCEEEEcCC-CCc---h---hHHHHHhcCCcchHhhcccccee
Confidence 4788999999998 332 1 0112222 247888888765
No 236
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=25.98 E-value=60 Score=21.20 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=12.6
Q ss_pred HHHHHhhccCCeEEEE
Q 033914 3 DAVRLNMRIRGRIAVC 18 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~ 18 (109)
+...+.|++||++++.
T Consensus 161 ~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 161 EALIDQLKEGGILVMP 176 (215)
T ss_pred HHHHHhcCcCcEEEEE
Confidence 4567889999998763
No 237
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=25.85 E-value=69 Score=20.78 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=15.8
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
++.+.++|+++|+++++..
T Consensus 141 l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 141 LREMYRVLKPGGRLVILEF 159 (239)
T ss_pred HHHHHHhccCCcEEEEEEe
Confidence 4667889999999998765
No 238
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=25.69 E-value=69 Score=17.93 Aligned_cols=47 Identities=21% Similarity=0.342 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHcCceeeeeee---e-cccchHHHHHHHhhc--CCCcceEE
Q 033914 57 YPKFLELVMRAIKEGKLVYVEDI---A-EGLEKAPSALVGIFT--GQNVGKQL 103 (109)
Q Consensus 57 ~~~~~~~~~~~~~~G~l~~~~~~---~-~~l~~~~~A~~~l~~--g~~~GKvv 103 (109)
.+..+..++++++.|+--..... + .+.+++.++++.+-+ -...|+||
T Consensus 22 ~~~L~r~LLr~LA~G~PVt~~~LA~a~g~~~e~v~~~L~~~p~tEyD~~GrIV 74 (77)
T PF12324_consen 22 FAWLLRPLLRLLAKGQPVTVEQLAAALGWPVEEVRAALAAMPDTEYDDQGRIV 74 (77)
T ss_dssp HHHHHHHHHHHHTTTS-B-HHHHHHHHT--HHHHHHHHHH-TTSEEETTSEEE
T ss_pred cHHHHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHhCCCceEcCCCCee
Confidence 34567888999999974333221 1 389999999988753 23457765
No 239
>PLN02476 O-methyltransferase
Probab=25.65 E-value=62 Score=22.61 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=15.6
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
++.++++|++||.|++=..
T Consensus 211 ~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 211 FELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred HHHHHHhcCCCcEEEEecC
Confidence 6788999999999977554
No 240
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=25.59 E-value=95 Score=21.33 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=22.1
Q ss_pred cchHHHHHHHhhcCCCcceEEEEeecC
Q 033914 83 LEKAPSALVGIFTGQNVGKQLVVIARE 109 (109)
Q Consensus 83 l~~~~~A~~~l~~g~~~GKvvv~~~~~ 109 (109)
-+++.++++.|...+...|+|+-++.|
T Consensus 132 ~~~L~~~L~~m~~~~~y~~lv~~veaC 158 (256)
T PF01650_consen 132 ADDLADALDKMHEKKRYKKLVFVVEAC 158 (256)
T ss_pred HHHHHHHHHHHHhhCCcceEEEEEecc
Confidence 467889999999888888999887654
No 241
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=25.24 E-value=70 Score=21.47 Aligned_cols=17 Identities=24% Similarity=-0.044 Sum_probs=13.7
Q ss_pred HHHHHHhhccCCeEEEE
Q 033914 2 LDAVRLNMRIRGRIAVC 18 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~ 18 (109)
+....+.|++||++++.
T Consensus 109 l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 109 LVRWVDELAPGSWIAVQ 125 (255)
T ss_pred HHHHHHhCCCCcEEEEE
Confidence 45677889999999875
No 242
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=25.02 E-value=70 Score=21.20 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=15.4
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
+....+.|++||++++.-.
T Consensus 144 l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 144 LTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred HHHHHHhcCCCeEEEEeec
Confidence 4667788999999988754
No 243
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=24.75 E-value=72 Score=21.31 Aligned_cols=18 Identities=17% Similarity=0.027 Sum_probs=14.5
Q ss_pred HHHHHHhhccCCeEEEEc
Q 033914 2 LDAVRLNMRIRGRIAVCG 19 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G 19 (109)
+....++|++||++++..
T Consensus 113 l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 113 FPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred HHHHHHhcCCCcEEEEEC
Confidence 466778999999998853
No 244
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=24.19 E-value=67 Score=20.23 Aligned_cols=17 Identities=12% Similarity=0.014 Sum_probs=12.5
Q ss_pred HHHHHHhhccCCeEEEE
Q 033914 2 LDAVRLNMRIRGRIAVC 18 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~ 18 (109)
+..+++.|++||.+|+-
T Consensus 122 l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 122 LLLALELLKPGGTFVIK 138 (181)
T ss_dssp HHHHHHHHCTTEEEEEE
T ss_pred HHHHHhhhcCCCEEEEE
Confidence 34567789999987654
No 245
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=24.10 E-value=87 Score=20.12 Aligned_cols=17 Identities=18% Similarity=0.102 Sum_probs=13.3
Q ss_pred HHHHHHhhccCCeEEEE
Q 033914 2 LDAVRLNMRIRGRIAVC 18 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~ 18 (109)
+..+.+.|++||++.+.
T Consensus 115 l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 115 LKEYANVLKKGGVIHFK 131 (194)
T ss_pred HHHHHHHhCCCCEEEEE
Confidence 45677889999999665
No 246
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=23.92 E-value=86 Score=19.41 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=16.3
Q ss_pred HHHHHhhccCCeEEEEccc
Q 033914 3 DAVRLNMRIRGRIAVCGMI 21 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~~ 21 (109)
+...+++..++||.++|.-
T Consensus 2 ~~~~~~l~~a~rI~~~G~G 20 (154)
T TIGR00441 2 VLLADSFKAGGKVLICGNG 20 (154)
T ss_pred hHHHHHHHCCCEEEEEeCc
Confidence 4678899999999999973
No 247
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=23.73 E-value=60 Score=19.70 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=12.8
Q ss_pred hhccCCeEEEEccccc
Q 033914 8 NMRIRGRIAVCGMISQ 23 (109)
Q Consensus 8 ~l~~~Griv~~G~~~~ 23 (109)
+.+|.|.+|+||.+..
T Consensus 81 l~aP~gs~V~YGQP~e 96 (121)
T PF04019_consen 81 LYAPEGSVVLYGQPGE 96 (121)
T ss_pred HhCCCCCEEEECCCCC
Confidence 4688899999998653
No 248
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=23.62 E-value=67 Score=23.66 Aligned_cols=22 Identities=9% Similarity=0.001 Sum_probs=18.1
Q ss_pred HHHHHHhhccCCeEEEEccccc
Q 033914 2 LDAVRLNMRIRGRIAVCGMISQ 23 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~~ 23 (109)
...+++.|++||.++.|-..+.
T Consensus 319 ~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 319 NDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred HHHHHHHcCCCCEEEEEecCCc
Confidence 4678999999999999976443
No 249
>PF12916 DUF3834: Protein of unknown function (DUF3834); InterPro: IPR024533 This family is likely to be related to solute-binding lipo-proteins.; PDB: 3MST_A.
Probab=23.57 E-value=57 Score=21.70 Aligned_cols=35 Identities=9% Similarity=0.132 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCceeeeeeeecccchHHHHHHHhhc
Q 033914 59 KFLELVMRAIKEGKLVYVEDIAEGLEKAPSALVGIFT 95 (109)
Q Consensus 59 ~~~~~~~~~~~~G~l~~~~~~~~~l~~~~~A~~~l~~ 95 (109)
+++.++++++++|+++..+.. -+++. .+.||++..
T Consensus 101 dD~~~i~~Ml~~g~vdsAVv~-~~~~~-G~~fEdl~~ 135 (201)
T PF12916_consen 101 DDMSEIVKMLNEGEVDSAVVG-SEFSK-GETFEDLLG 135 (201)
T ss_dssp --HHHHHHHHHTT-E--EEEE-TTT----EEHHHHHH
T ss_pred cCHHHHHHHHhcCceeeeeec-chhcc-chhHHHHHh
Confidence 468889999999999766543 34433 455665544
No 250
>PF09857 DUF2084: Uncharacterized protein conserved in bacteria (DUF2084); InterPro: IPR018654 This domain is found in various hypothetical bacterial proteins that have no known function.
Probab=23.50 E-value=1.1e+02 Score=17.48 Aligned_cols=19 Identities=26% Similarity=0.001 Sum_probs=14.3
Q ss_pred HHHHhhccCCeEEEEcccc
Q 033914 4 AVRLNMRIRGRIAVCGMIS 22 (109)
Q Consensus 4 ~~l~~l~~~Griv~~G~~~ 22 (109)
..|-.|+.||+|...=..+
T Consensus 9 R~LHvLAqGG~I~~~rd~~ 27 (85)
T PF09857_consen 9 RVLHVLAQGGRIRHERDDS 27 (85)
T ss_pred HHHHHHhcCCeEEEEECCC
Confidence 4677899999998775433
No 251
>COG1803 MgsA Methylglyoxal synthase [Carbohydrate transport and metabolism]
Probab=23.45 E-value=76 Score=19.71 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=20.6
Q ss_pred HHHHHHHHcCceeeeeeeecccchHH
Q 033914 62 ELVMRAIKEGKLVYVEDIAEGLEKAP 87 (109)
Q Consensus 62 ~~~~~~~~~G~l~~~~~~~~~l~~~~ 87 (109)
+++-.++++|+++..+....||...|
T Consensus 65 QQiGa~Iaeg~id~lIFf~DPLtaqP 90 (142)
T COG1803 65 QQIGALIAEGKIDVLIFFWDPLTAQP 90 (142)
T ss_pred HHHHHHHhcCcceEEEEEecCCCCCC
Confidence 57888999999999987766776543
No 252
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=23.31 E-value=87 Score=20.22 Aligned_cols=19 Identities=5% Similarity=0.064 Sum_probs=13.6
Q ss_pred HHHHHHhhccCCeEEEEcc
Q 033914 2 LDAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~ 20 (109)
+....++|++||.++++..
T Consensus 117 l~~i~~~LkpgG~~~~~~~ 135 (197)
T PRK11207 117 IANMQRCTKPGGYNLIVAA 135 (197)
T ss_pred HHHHHHHcCCCcEEEEEEE
Confidence 4566778999999655443
No 253
>PRK13936 phosphoheptose isomerase; Provisional
Probab=23.16 E-value=96 Score=20.17 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=15.4
Q ss_pred HHHHHhhccCCeEEEEcc
Q 033914 3 DAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~ 20 (109)
+.+.+++..++||.+||.
T Consensus 34 ~~~~~~l~~a~~I~i~G~ 51 (197)
T PRK13936 34 ELMVQALLNEGKILACGN 51 (197)
T ss_pred HHHHHHHHCCCEEEEEeC
Confidence 456678999999999997
No 254
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=23.08 E-value=73 Score=20.71 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=12.7
Q ss_pred HHHHHhhccCCeEEEE
Q 033914 3 DAVRLNMRIRGRIAVC 18 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~ 18 (109)
+..++.|++||++++.
T Consensus 157 ~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 157 SALVRQLKDGGVLVIP 172 (205)
T ss_pred HHHHHhcCcCcEEEEE
Confidence 4567889999999764
No 255
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=23.06 E-value=64 Score=21.25 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=16.7
Q ss_pred HHHHHhhccCCeEEEEcccccc
Q 033914 3 DAVRLNMRIRGRIAVCGMISQY 24 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~~~~~ 24 (109)
+.+++.++++|+|+.+++.+++
T Consensus 80 ~~~~~~~~~~g~Iv~isS~~~~ 101 (241)
T PRK12428 80 EALLPRMAPGGAIVNVASLAGA 101 (241)
T ss_pred HHHHHhccCCcEEEEeCcHHhh
Confidence 4556667778999999987664
No 256
>PRK04457 spermidine synthase; Provisional
Probab=23.05 E-value=78 Score=21.64 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=13.9
Q ss_pred HHHHHHhhccCCeEEE
Q 033914 2 LDAVRLNMRIRGRIAV 17 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~ 17 (109)
++.+.++|+++|.+++
T Consensus 160 l~~~~~~L~pgGvlvi 175 (262)
T PRK04457 160 FDDCRNALSSDGIFVV 175 (262)
T ss_pred HHHHHHhcCCCcEEEE
Confidence 5678889999999987
No 257
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=22.84 E-value=1.8e+02 Score=19.69 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCceeeeeeeecccchHHHHHHH
Q 033914 58 PKFLELVMRAIKEGKLVYVEDIAEGLEKAPSALVG 92 (109)
Q Consensus 58 ~~~~~~~~~~~~~G~l~~~~~~~~~l~~~~~A~~~ 92 (109)
.+.++.+.++.++|+++..-...+..+.+.++++.
T Consensus 108 ~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~ 142 (267)
T PRK11172 108 EEFMQALLEAKKQGLTREIGISNFTIALMKQAIAA 142 (267)
T ss_pred HHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHh
Confidence 35677788888888888765555666666666653
No 258
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.77 E-value=1.2e+02 Score=15.14 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCceeeee----------eeecccchHHHHHHHhh
Q 033914 58 PKFLELVMRAIKEGKLVYVE----------DIAEGLEKAPSALVGIF 94 (109)
Q Consensus 58 ~~~~~~~~~~~~~G~l~~~~----------~~~~~l~~~~~A~~~l~ 94 (109)
+....++++.+++..+++.. ..+.+-++.+++.+.++
T Consensus 15 ~~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~i~~~~~~~~~~~Lh 61 (66)
T cd04924 15 PGVAGRVFGALGKAGINVIMISQGSSEYNISFVVAEDDGWAAVKAVH 61 (66)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHH
Confidence 34455666667666555531 12235667777766654
No 259
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=22.30 E-value=49 Score=17.11 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=11.4
Q ss_pred hccCCeEEEEcccc
Q 033914 9 MRIRGRIAVCGMIS 22 (109)
Q Consensus 9 l~~~Griv~~G~~~ 22 (109)
+.+.|+|++.|...
T Consensus 8 ~q~DGkIlv~G~~~ 21 (55)
T TIGR02608 8 VQSDGKILVAGYVD 21 (55)
T ss_pred ECCCCcEEEEEEee
Confidence 46789999999754
No 260
>PF11195 DUF2829: Protein of unknown function (DUF2829) ; InterPro: IPR021361 This entry is represented by Bacteriophage 16-3, p046. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.09 E-value=80 Score=17.31 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=14.7
Q ss_pred HHHHHHhhccCCeEEEEc
Q 033914 2 LDAVRLNMRIRGRIAVCG 19 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G 19 (109)
|..|+++|+.|.++.--|
T Consensus 3 F~eAl~alK~Gkkv~R~g 20 (75)
T PF11195_consen 3 FGEALEALKQGKKVARKG 20 (75)
T ss_pred HHHHHHHHHcCCCEEeCc
Confidence 678999999988886665
No 261
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=21.90 E-value=2.1e+02 Score=20.14 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCceeeeeeeecccchHHHHHHH
Q 033914 59 KFLELVMRAIKEGKLVYVEDIAEGLEKAPSALVG 92 (109)
Q Consensus 59 ~~~~~~~~~~~~G~l~~~~~~~~~l~~~~~A~~~ 92 (109)
+.+..+.++..+|+++..=..-|..+++.++.+.
T Consensus 121 etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~ 154 (280)
T COG0656 121 ETWKALEELVDEGLIRAIGVSNFGVEHLEELLSL 154 (280)
T ss_pred HHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHh
Confidence 6677777777777777654444666666666554
No 262
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=21.90 E-value=67 Score=22.72 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=14.6
Q ss_pred HHHHHHhhccCCeEEEEc
Q 033914 2 LDAVRLNMRIRGRIAVCG 19 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G 19 (109)
+....++|++||++++-.
T Consensus 209 L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 209 LKQLKDQLVPGGELVLET 226 (322)
T ss_pred HHHHHHhcCCCcEEEEEE
Confidence 567788999999998743
No 263
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=21.75 E-value=72 Score=23.40 Aligned_cols=18 Identities=6% Similarity=-0.129 Sum_probs=15.4
Q ss_pred HHHHHhhccCCeEEEEcc
Q 033914 3 DAVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~ 20 (109)
..++++|++||.++.|..
T Consensus 323 ~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 323 MLAIQLLNPGGILLTFSC 340 (396)
T ss_pred HHHHHHcCCCeEEEEEeC
Confidence 467899999999999874
No 264
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=21.52 E-value=2.2e+02 Score=19.45 Aligned_cols=34 Identities=12% Similarity=0.098 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHcCceeeeeeeecccchHHHHH
Q 033914 57 YPKFLELVMRAIKEGKLVYVEDIAEGLEKAPSAL 90 (109)
Q Consensus 57 ~~~~~~~~~~~~~~G~l~~~~~~~~~l~~~~~A~ 90 (109)
+.+.++.+.++.++|+++..-...+..+++.++.
T Consensus 116 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~ 149 (275)
T PRK11565 116 YVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLI 149 (275)
T ss_pred HHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHHH
Confidence 3456666777777777776544445545554444
No 265
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=21.44 E-value=51 Score=22.57 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=14.9
Q ss_pred HHHHHHhh-ccCCeEEEEc
Q 033914 2 LDAVRLNM-RIRGRIAVCG 19 (109)
Q Consensus 2 ~~~~l~~l-~~~Griv~~G 19 (109)
++.+.++| ++||+++++-
T Consensus 128 i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 128 IPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp HHHHHHHE-EEEEEEEEEE
T ss_pred HHHHHHHHhcCCceEEEEC
Confidence 56788899 8999998884
No 266
>PF12471 GTP_CH_N: GTP cyclohydrolase N terminal ; InterPro: IPR022163 This domain family is found in bacteria and eukaryotes, and is approximately 190 amino acids in length. This family is the N-terminal of GTP cyclohydrolase, the rate limiting enzyme in the synthesis of tetrahydrobiopterin.
Probab=21.37 E-value=1.7e+02 Score=19.36 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=23.9
Q ss_pred HHHcC-ceeeeeeeecccchHHHHHHHhhcCC--CcceEEEE
Q 033914 67 AIKEG-KLVYVEDIAEGLEKAPSALVGIFTGQ--NVGKQLVV 105 (109)
Q Consensus 67 ~~~~G-~l~~~~~~~~~l~~~~~A~~~l~~g~--~~GKvvv~ 105 (109)
.+++| .|+|.+.+|..-=+++|-.+.+.+|+ .-||+|+.
T Consensus 114 ~~~~G~DiRPTIAvTkAh~~lpEi~eav~~GrL~~DGki~~~ 155 (194)
T PF12471_consen 114 EIEEGYDIRPTIAVTKAHMKLPEIREAVRKGRLVPDGKIVLN 155 (194)
T ss_pred HHHcCCccCccceeeccccCcHHHHHHHHhCCCCCCCeEEec
Confidence 34666 57788877754444455555555554 36888875
No 267
>PRK12747 short chain dehydrogenase; Provisional
Probab=21.26 E-value=89 Score=20.50 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=17.1
Q ss_pred HHHHHhhccCCeEEEEcccccc
Q 033914 3 DAVRLNMRIRGRIAVCGMISQY 24 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~~~~~ 24 (109)
..+++.++..|+|+.+++.++.
T Consensus 128 ~~~~~~~~~~g~iv~isS~~~~ 149 (252)
T PRK12747 128 QQALSRLRDNSRIINISSAATR 149 (252)
T ss_pred HHHHHHhhcCCeEEEECCcccc
Confidence 4567777788999999987664
No 268
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=21.02 E-value=83 Score=21.34 Aligned_cols=18 Identities=11% Similarity=-0.047 Sum_probs=13.8
Q ss_pred HHHHHHhhccCCeEEEEc
Q 033914 2 LDAVRLNMRIRGRIAVCG 19 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G 19 (109)
++.+.+.|+++|++++.-
T Consensus 199 ~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 199 AAGAPDWLAPGGHLLVET 216 (251)
T ss_pred HHHHHHhcCCCCEEEEEE
Confidence 456668899999998764
No 269
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=20.98 E-value=98 Score=16.81 Aligned_cols=20 Identities=10% Similarity=0.267 Sum_probs=12.9
Q ss_pred HHHHhhccCCeEEEEccccc
Q 033914 4 AVRLNMRIRGRIAVCGMISQ 23 (109)
Q Consensus 4 ~~l~~l~~~Griv~~G~~~~ 23 (109)
.-++.|+..|+.|+|=...|
T Consensus 40 ~~I~~L~~~G~~vicY~s~G 59 (74)
T PF03537_consen 40 EEIARLKAQGKKVICYFSIG 59 (74)
T ss_dssp HHHHHHHHTT-EEEEEEESS
T ss_pred HHHHHHHHCCCEEEEEEeCc
Confidence 45677888898888755333
No 270
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=20.97 E-value=97 Score=20.88 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=17.0
Q ss_pred HHHHHHhhccCCeEEEEcccc
Q 033914 2 LDAVRLNMRIRGRIAVCGMIS 22 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G~~~ 22 (109)
++.++++|++||-||.=-...
T Consensus 149 le~~~~lLr~GGliv~DNvl~ 169 (219)
T COG4122 149 LERALPLLRPGGLIVADNVLF 169 (219)
T ss_pred HHHHHHHhCCCcEEEEeeccc
Confidence 678899999999998776543
No 271
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=20.84 E-value=1.1e+02 Score=20.02 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=13.8
Q ss_pred HHHHhhccCCeEEEEcc
Q 033914 4 AVRLNMRIRGRIAVCGM 20 (109)
Q Consensus 4 ~~l~~l~~~Griv~~G~ 20 (109)
...+++..++||.+||.
T Consensus 33 ~l~~~l~~~~rI~~~G~ 49 (196)
T PRK10886 33 TLVQSLLNGNKILCCGN 49 (196)
T ss_pred HHHHHHHcCCEEEEEEC
Confidence 34566789999999997
No 272
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=20.60 E-value=3e+02 Score=19.04 Aligned_cols=12 Identities=25% Similarity=0.476 Sum_probs=9.6
Q ss_pred CCeEEEEccccc
Q 033914 12 RGRIAVCGMISQ 23 (109)
Q Consensus 12 ~Griv~~G~~~~ 23 (109)
.|++.++|.-.|
T Consensus 2 ~G~L~VVGiGPG 13 (249)
T COG1010 2 TGKLYVVGIGPG 13 (249)
T ss_pred CceEEEEEeCCC
Confidence 599999998554
No 273
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.60 E-value=91 Score=20.90 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=13.0
Q ss_pred HHHHHhhccCCeEEE-Ec
Q 033914 3 DAVRLNMRIRGRIAV-CG 19 (109)
Q Consensus 3 ~~~l~~l~~~Griv~-~G 19 (109)
+.-++.|++|||+|+ +|
T Consensus 153 ~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 153 EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred HHHHHhcccCCEEEEEEc
Confidence 345788999999965 45
No 274
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=20.60 E-value=57 Score=20.73 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=15.6
Q ss_pred cccchHHHHHHHhhcCCCcceEEEEe
Q 033914 81 EGLEKAPSALVGIFTGQNVGKQLVVI 106 (109)
Q Consensus 81 ~~l~~~~~A~~~l~~g~~~GKvvv~~ 106 (109)
|+++.-+..+++...-...||+||..
T Consensus 31 yGi~ape~~~dDy~g~DVkGKiVvvl 56 (157)
T cd04821 31 YGIVAPEYGWDDYKGLDVKGKTVVIL 56 (157)
T ss_pred cCccCcccCcccccCCCcCCcEEEEE
Confidence 45554334555555556778888765
No 275
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=20.58 E-value=2.6e+02 Score=18.25 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=39.4
Q ss_pred hHHHhhcceeeeeeeecccc---cchHHHHHHHHHHHHcCceeeeeeeecccchHHHHHHHhhcC
Q 033914 35 LMQVVGKRIRMEGFLAGDFY---HQYPKFLELVMRAIKEGKLVYVEDIAEGLEKAPSALVGIFTG 96 (109)
Q Consensus 35 ~~~~~~k~~~~~G~~~~~~~---~~~~~~~~~~~~~~~~G~l~~~~~~~~~l~~~~~A~~~l~~g 96 (109)
+..+...+..+.|++.+.-- +++..-.+++.++.+.-.|+..... ++++++-++..-+++.
T Consensus 15 ~~~L~~~g~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~-Y~~~~w~~~v~~~e~e 78 (176)
T PF02677_consen 15 LERLREEGFDVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIEGD-YDPEEWLRAVKGLEDE 78 (176)
T ss_pred HHHHHHCCCCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEecC-CCHHHHHHHHhhCccC
Confidence 44556666888888865332 2344445666666666677666554 8888888887777654
No 276
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=20.39 E-value=2.2e+02 Score=20.09 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCceeeeeeeecccchHHHHHHHh
Q 033914 58 PKFLELVMRAIKEGKLVYVEDIAEGLEKAPSALVGI 93 (109)
Q Consensus 58 ~~~~~~~~~~~~~G~l~~~~~~~~~l~~~~~A~~~l 93 (109)
.+.+..+-+++++|+++..-...+.-+++.+|++..
T Consensus 135 ~e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~ 170 (316)
T COG0667 135 EETLEALDELVREGKIRYIGVSNYSAEQIAEALAVA 170 (316)
T ss_pred HHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhc
Confidence 356888889999999988766666777788777764
No 277
>PRK09744 DNA-binding transcriptional regulator DicC; Provisional
Probab=20.32 E-value=1.4e+02 Score=16.59 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=16.8
Q ss_pred cccchHHHHHHHHHHHHcCceeee
Q 033914 53 FYHQYPKFLELVMRAIKEGKLVYV 76 (109)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~G~l~~~ 76 (109)
|.+..|+...--++.+..|+|++.
T Consensus 30 WGe~VPe~rA~~ie~~T~G~LK~~ 53 (75)
T PRK09744 30 WGELVPEGRAMRLQEASGGELQYD 53 (75)
T ss_pred HhccCcHHHHHHHHHHhCCceecC
Confidence 334456656666788889999887
No 278
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=20.30 E-value=1e+02 Score=21.71 Aligned_cols=18 Identities=17% Similarity=0.219 Sum_probs=14.0
Q ss_pred HHHHHHhhccCCeEEEEc
Q 033914 2 LDAVRLNMRIRGRIAVCG 19 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G 19 (109)
++.+.+.|++||+++++-
T Consensus 277 l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 277 LEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred HHHHHHHccCCcEEEEEE
Confidence 456678899999998763
No 279
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=20.17 E-value=1.1e+02 Score=21.09 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=14.5
Q ss_pred HHHHHHhhccCCeEEEEc
Q 033914 2 LDAVRLNMRIRGRIAVCG 19 (109)
Q Consensus 2 ~~~~l~~l~~~Griv~~G 19 (109)
+..+-++|+++|++.+|=
T Consensus 153 i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 153 IRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred HHHHHHHccCCCEEEEEe
Confidence 456778899999998884
No 280
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.15 E-value=1.2e+02 Score=19.65 Aligned_cols=21 Identities=14% Similarity=0.109 Sum_probs=16.2
Q ss_pred HHHHHhhccCCeEEEEccccc
Q 033914 3 DAVRLNMRIRGRIAVCGMISQ 23 (109)
Q Consensus 3 ~~~l~~l~~~Griv~~G~~~~ 23 (109)
+..+++++++|+++.++..++
T Consensus 119 ~~~~~~~~~~~~iv~~ss~~~ 139 (238)
T PRK05786 119 NASLRFLKEGSSIVLVSSMSG 139 (238)
T ss_pred HHHHHHHhcCCEEEEEecchh
Confidence 456677788999999997654
Done!