BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033918
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 173 bits (438), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 82/86 (95%), Positives = 84/86 (97%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 9 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 68
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIV 86
IWDTAGQERFRTITSSYYRGAHGIIV
Sbjct: 69 IWDTAGQERFRTITSSYYRGAHGIIV 94
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 172 bits (437), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 82/86 (95%), Positives = 84/86 (97%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIV 86
IWDTAGQERFRTITSSYYRGAHGIIV
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIV 86
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 172 bits (435), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 81/86 (94%), Positives = 84/86 (97%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
MNPEYDYLFKLLLIGDSGVGK+CLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQ
Sbjct: 9 MNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 68
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIV 86
IWDTAGQERFRTITSSYYRGAHGIIV
Sbjct: 69 IWDTAGQERFRTITSSYYRGAHGIIV 94
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 169 bits (429), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/85 (95%), Positives = 83/85 (97%)
Query: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQI 61
NPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQI
Sbjct: 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 86
Query: 62 WDTAGQERFRTITSSYYRGAHGIIV 86
WDTAGQERFRTITSSYYRGAHGIIV
Sbjct: 87 WDTAGQERFRTITSSYYRGAHGIIV 111
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
Length = 181
Score = 168 bits (426), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 80/84 (95%), Positives = 82/84 (97%)
Query: 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
PEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIW
Sbjct: 4 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 63
Query: 63 DTAGQERFRTITSSYYRGAHGIIV 86
DTAGQERFRTITSSYYRGAHGIIV
Sbjct: 64 DTAGQERFRTITSSYYRGAHGIIV 87
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp
At Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp
At Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
Length = 175
Score = 168 bits (426), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 80/84 (95%), Positives = 82/84 (97%)
Query: 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
PEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIW
Sbjct: 4 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 63
Query: 63 DTAGQERFRTITSSYYRGAHGIIV 86
DTAGQERFRTITSSYYRGAHGIIV
Sbjct: 64 DTAGQERFRTITSSYYRGAHGIIV 87
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 168 bits (425), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 80/84 (95%), Positives = 82/84 (97%)
Query: 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
PEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIW
Sbjct: 1 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 63 DTAGQERFRTITSSYYRGAHGIIV 86
DTAGQERFRTITSSYYRGAHGIIV
Sbjct: 61 DTAGQERFRTITSSYYRGAHGIIV 84
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 167 bits (424), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/85 (94%), Positives = 83/85 (97%)
Query: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQI 61
+PEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQI
Sbjct: 19 SPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 78
Query: 62 WDTAGQERFRTITSSYYRGAHGIIV 86
WDTAGQERFRTITSSYYRGAHGIIV
Sbjct: 79 WDTAGQERFRTITSSYYRGAHGIIV 103
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 165 bits (418), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 79/84 (94%), Positives = 81/84 (96%)
Query: 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
PEYD LFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIW
Sbjct: 1 PEYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 63 DTAGQERFRTITSSYYRGAHGIIV 86
DTAGQERFRTITSSYYRGAHGIIV
Sbjct: 61 DTAGQERFRTITSSYYRGAHGIIV 84
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 163 bits (413), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 76/86 (88%), Positives = 82/86 (95%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ + KT+KLQ
Sbjct: 2 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQ 61
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIV 86
IWDTAGQERFRTITSSYYRGAHGII+
Sbjct: 62 IWDTAGQERFRTITSSYYRGAHGIII 87
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex
With Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 160 bits (404), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 74/86 (86%), Positives = 81/86 (94%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
MN EYDYLFKLLLIG+SGVGKSCLLLRF+DD+Y YISTIGVDFKI+TVE DGKT+KLQ
Sbjct: 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIV 86
IWDTAGQERFRTITSSYYRG+HGII+
Sbjct: 61 IWDTAGQERFRTITSSYYRGSHGIII 86
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 160 bits (404), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 74/86 (86%), Positives = 81/86 (94%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
MN EYDYLFKLLLIG+SGVGKSCLLLRF+DD+Y YISTIGVDFKI+TVE DGKT+KLQ
Sbjct: 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIV 86
IWDTAGQERFRTITSSYYRG+HGII+
Sbjct: 61 IWDTAGQERFRTITSSYYRGSHGIII 86
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 154 bits (388), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/84 (85%), Positives = 79/84 (94%)
Query: 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
EYDYLFKLLLIG+SGVGKSCLLLRF+DD+Y YISTIGVDFKI+TVE DGKT+KLQIW
Sbjct: 16 SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 75
Query: 63 DTAGQERFRTITSSYYRGAHGIIV 86
DTAGQERFRTITSSYYRG+HGII+
Sbjct: 76 DTAGQERFRTITSSYYRGSHGIII 99
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 151 bits (382), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 73/77 (94%), Positives = 75/77 (97%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 70 FRTITSSYYRGAHGIIV 86
FRTITSSYYRGAHGIIV
Sbjct: 61 FRTITSSYYRGAHGIIV 77
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 147 bits (371), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/76 (94%), Positives = 74/76 (97%)
Query: 11 LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70
LLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 71 RTITSSYYRGAHGIIV 86
RTITSSYYRGAHGIIV
Sbjct: 61 RTITSSYYRGAHGIIV 76
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 78/86 (90%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
M +YD+LFKLL+IGDSGVGKS LLLRFAD+++ SYI+TIGVDFKIRTVE +G+ +KLQ
Sbjct: 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 61
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIV 86
IWDTAGQERFRTITS+YYRG HG+IV
Sbjct: 62 IWDTAGQERFRTITSTYYRGTHGVIV 87
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 77/86 (89%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
M YDYLFKLLLIGDSGVGK+C+L RF++D++ ++ISTIG+DFKIRT+E DGK IKLQ
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIV 86
IWDTAGQERFRTIT++YYRGA GI++
Sbjct: 61 IWDTAGQERFRTITTAYYRGAMGIML 86
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 135 bits (341), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 75/81 (92%)
Query: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
DYLFKLLLIGDSGVGK+C+L RF++D++ ++ISTIG+DFKIRT+E DGK IKLQIWDTA
Sbjct: 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 66 GQERFRTITSSYYRGAHGIIV 86
GQERFRTIT++YYRGA GI++
Sbjct: 64 GQERFRTITTAYYRGAMGIML 84
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 128 bits (322), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 73/82 (89%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
YD + K+LLIGDSGVGKSCLL+RF +D + S+I+TIG+DFKI+TV+ +GK +KLQ+WDT
Sbjct: 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 76
Query: 65 AGQERFRTITSSYYRGAHGIIV 86
AGQERFRTIT++YYRGA GII+
Sbjct: 77 AGQERFRTITTAYYRGAMGIIL 98
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 57/81 (70%), Positives = 72/81 (88%)
Query: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
D + K+LLIGDSGVGKSCLL+RF +D + S+I+TIG+DFKI+TV+ +GK +KLQIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 66 GQERFRTITSSYYRGAHGIIV 86
GQERFRTIT++YYRGA GII+
Sbjct: 61 GQERFRTITTAYYRGAMGIIL 81
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 125 bits (315), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 57/81 (70%), Positives = 72/81 (88%)
Query: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
D + K+LLIGDSGVGKSCLL+RF +D + S+I+TIG+DFKI+TV+ +GK +KLQIWDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 66 GQERFRTITSSYYRGAHGIIV 86
GQERFRTIT++YYRGA GII+
Sbjct: 61 GQERFRTITTAYYRGAXGIIL 81
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 125 bits (313), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 56/81 (69%), Positives = 72/81 (88%)
Query: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
D + K+LLIGDSGVGKSCLL+RF +D + S+I+TIG+DFKI+TV+ +GK +KLQ+WDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 66 GQERFRTITSSYYRGAHGIIV 86
GQERFRTIT++YYRGA GII+
Sbjct: 61 GQERFRTITTAYYRGAXGIIL 81
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 72/84 (85%)
Query: 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
P + K+LLIGDSGVGKSCLL+RF +D + S+I+TIG+DFKI+TV+ +GK +KLQ+W
Sbjct: 2 PLGSSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLW 61
Query: 63 DTAGQERFRTITSSYYRGAHGIIV 86
DTAGQERFRTIT++YYRGA GII+
Sbjct: 62 DTAGQERFRTITTAYYRGAMGIIL 85
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 71/83 (85%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
+DY+FK+L+IG+S VGK+ L R+ADDS+ +++ST+G+DFK++T+ ++ K IKLQIWD
Sbjct: 1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 64 TAGQERFRTITSSYYRGAHGIIV 86
TAGQER+RTIT++YYRGA G I+
Sbjct: 61 TAGQERYRTITTAYYRGAMGFIL 83
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 70/82 (85%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
+DY+FKLL+IG+S VGK+ L R+ADD++ +++ST+G+DFK++TV + K +KLQIWDT
Sbjct: 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDT 79
Query: 65 AGQERFRTITSSYYRGAHGIIV 86
AGQER+RTIT++YYRGA G I+
Sbjct: 80 AGQERYRTITTAYYRGAMGFIL 101
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 69/81 (85%)
Query: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
DY+FKLLLIG+S VGK+ L R+ADDS+ +++ST+G+DFK++TV + K IKLQIWDTA
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 66 GQERFRTITSSYYRGAHGIIV 86
GQER+RTIT++YYRGA G ++
Sbjct: 80 GQERYRTITTAYYRGAMGFLL 100
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 69/82 (84%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
+DY FK+L+IG+S VGK+ L R+ADDS+ +++ST+G+DFK++T+ ++ K IKLQIWDT
Sbjct: 5 FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 65 AGQERFRTITSSYYRGAHGIIV 86
AG ER+RTIT++YYRGA G I+
Sbjct: 65 AGLERYRTITTAYYRGAXGFIL 86
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/83 (65%), Positives = 66/83 (79%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+++ DGKTIK QIWD
Sbjct: 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 84
Query: 64 TAGQERFRTITSSYYRGAHGIIV 86
TAGQER+R ITS+YYRGA G ++
Sbjct: 85 TAGQERYRAITSAYYRGAVGALL 107
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 68/86 (79%)
Query: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQI 61
+ +YD+LFKL+L+GD+ VGK+C++ RF ++ E STIGVDF ++T+E GK +KLQI
Sbjct: 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 82
Query: 62 WDTAGQERFRTITSSYYRGAHGIIVG 87
WDTAGQERFRTIT SYYR A+G I+
Sbjct: 83 WDTAGQERFRTITQSYYRSANGAILA 108
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 110 bits (276), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 65/82 (79%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
YDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+++ DGKTIK QIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 65 AGQERFRTITSSYYRGAHGIIV 86
AGQER+R ITS+YYRGA G ++
Sbjct: 62 AGQERYRRITSAYYRGAVGALL 83
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 65/82 (79%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
YDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+++ DGKTIK QIWDT
Sbjct: 17 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 76
Query: 65 AGQERFRTITSSYYRGAHGIIV 86
AGQER+R ITS+YYRGA G ++
Sbjct: 77 AGQERYRAITSAYYRGAVGALL 98
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 110 bits (274), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 62/78 (79%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K+L+IG+SGVGKS LLLRF DD++ +TIGVDFK++T+ DG KL IWDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 69 RFRTITSSYYRGAHGIIV 86
RFRT+T SYYRGA G+I+
Sbjct: 76 RFRTLTPSYYRGAQGVIL 93
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
Length = 167
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 65/83 (78%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+++ DGKTIK QIWD
Sbjct: 1 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 64 TAGQERFRTITSSYYRGAHGIIV 86
TAG ER+R ITS+YYRGA G ++
Sbjct: 61 TAGLERYRAITSAYYRGAVGALL 83
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 65/83 (78%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+++ DGKTIK QIWD
Sbjct: 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 84
Query: 64 TAGQERFRTITSSYYRGAHGIIV 86
TAG ER+R ITS+YYRGA G ++
Sbjct: 85 TAGLERYRAITSAYYRGAVGALL 107
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 69/83 (83%), Gaps = 1/83 (1%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWD 63
YD FK++L+GDSGVGK+CLL+RF D +++ ++IST+G+DF+ + ++ DG +KLQ+WD
Sbjct: 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 64 TAGQERFRTITSSYYRGAHGIIV 86
TAGQERFR++T +YYR AH +++
Sbjct: 67 TAGQERFRSVTHAYYRDAHALLL 89
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
Length = 172
Score = 109 bits (272), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 65/83 (78%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+++ DGKTIK QIWD
Sbjct: 4 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 63
Query: 64 TAGQERFRTITSSYYRGAHGIIV 86
TAG ER+R ITS+YYRGA G ++
Sbjct: 64 TAGLERYRAITSAYYRGAVGALL 86
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 109 bits (272), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 65/83 (78%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+++ DGKTIK QIWD
Sbjct: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 66
Query: 64 TAGQERFRTITSSYYRGAHGIIV 86
TAG ER+R ITS+YYRGA G ++
Sbjct: 67 TAGLERYRAITSAYYRGAVGALL 89
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 109 bits (272), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 67/83 (80%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
+YD+LFK++LIG++GVGK+CL+ RF + +TIGVDF I+TVE +G+ +KLQIWD
Sbjct: 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 81
Query: 64 TAGQERFRTITSSYYRGAHGIIV 86
TAGQERFR+IT SYYR A+ +I+
Sbjct: 82 TAGQERFRSITQSYYRSANALIL 104
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 108 bits (271), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 64/83 (77%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
+YD LFK++LIGDSGVGKS LL RF + + STIGV+F RT+E +GK IK QIWD
Sbjct: 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68
Query: 64 TAGQERFRTITSSYYRGAHGIIV 86
TAGQER+R ITS+YYRGA G ++
Sbjct: 69 TAGQERYRAITSAYYRGAVGALI 91
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 108 bits (269), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 64/86 (74%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
M +YDYLFK++LIGDSGVGKS LL RF D + STIGV+F RT+E + K IK Q
Sbjct: 3 MGYDYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQ 62
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIV 86
IWDTAG ER+R ITS+YYRGA G ++
Sbjct: 63 IWDTAGLERYRAITSAYYRGAVGALI 88
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 62/84 (73%)
Query: 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
P YLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R V DGK IKLQIW
Sbjct: 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIW 75
Query: 63 DTAGQERFRTITSSYYRGAHGIIV 86
DTAGQE FR+IT SYYRGA G ++
Sbjct: 76 DTAGQESFRSITRSYYRGAAGALL 99
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 65/81 (80%)
Query: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
D+ ++++IG GVGK+ L+ RF DD++ E+ ST+GVDFKI+TVE GK I+LQIWDTA
Sbjct: 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 66 GQERFRTITSSYYRGAHGIIV 86
GQERF +ITS+YYR A GII+
Sbjct: 84 GQERFNSITSAYYRSAKGIIL 104
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 63/86 (73%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
+ Y YLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R + DGK IKLQ
Sbjct: 3 LGSAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQ 62
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIV 86
IWDTAGQE FR+IT SYYRGA G ++
Sbjct: 63 IWDTAGQESFRSITRSYYRGAAGALL 88
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 60/82 (73%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
Y Y+FK ++IGD GVGKSCLL +F + ++ TIGV+F R +E G+ IKLQIWDT
Sbjct: 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 71
Query: 65 AGQERFRTITSSYYRGAHGIIV 86
AGQERFR +T SYYRGA G ++
Sbjct: 72 AGQERFRAVTRSYYRGAAGALM 93
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 103 bits (256), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVE-QDGKTIKLQIWD 63
YDYLFK++LIGDSGVGKS LL RF D + STIGV+F ++++ ++ K IK QIWD
Sbjct: 4 YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 64 TAGQERFRTITSSYYRGAHGIIV 86
TAGQER+R ITS+YYRGA G ++
Sbjct: 64 TAGQERYRAITSAYYRGAVGALL 86
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 103 bits (256), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 61/81 (75%)
Query: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
D+LFK L+IG +G GKSCLL +F ++ + + TIGV+F R V GKT+KLQIWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 66 GQERFRTITSSYYRGAHGIIV 86
GQERFR++T SYYRGA G ++
Sbjct: 83 GQERFRSVTRSYYRGAAGALL 103
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 102 bits (253), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 63/86 (73%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
M+ YD+LFK L+IG++G GKSCLL +F + + + TIGV+F + + GK +KLQ
Sbjct: 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIV 86
IWDTAGQERFR++T SYYRGA G ++
Sbjct: 63 IWDTAGQERFRSVTRSYYRGAAGALL 88
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 59/83 (71%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
Y Y+FK ++IGD GVGKSCLL +F + ++ TIGV+F R +E G+ IKLQIWD
Sbjct: 26 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 85
Query: 64 TAGQERFRTITSSYYRGAHGIIV 86
TAGQ RFR +T SYYRGA G ++
Sbjct: 86 TAGQGRFRAVTRSYYRGAAGALM 108
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 61/82 (74%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
YD+LFK L+IG++G GKSCLL +F + + + TIGV+F + + GK +KLQIWDT
Sbjct: 8 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 67
Query: 65 AGQERFRTITSSYYRGAHGIIV 86
AGQERFR++T SYYRGA G ++
Sbjct: 68 AGQERFRSVTRSYYRGAAGALL 89
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 96.3 bits (238), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 60/82 (73%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
YD+LFK L+IG++G GKSCLL +F + + + TIGV+F + + GK +KLQIWDT
Sbjct: 5 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 64
Query: 65 AGQERFRTITSSYYRGAHGIIV 86
AG ERFR++T SYYRGA G ++
Sbjct: 65 AGLERFRSVTRSYYRGAAGALL 86
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 92.8 bits (229), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
+ P +FK+++IGDS VGK+CL RF + + +TIGVDF+ R V+ DG+ IK+Q
Sbjct: 22 LPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ 81
Query: 61 IWDTAGQERFR-TITSSYYRGAHGII 85
+WDTAGQERFR ++ YYR H ++
Sbjct: 82 LWDTAGQERFRKSMVQHYYRNVHAVV 107
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 92.8 bits (229), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 61/85 (71%)
Query: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQI 61
+ +Y+++FK++LIG+SGVGK+ LL RF + + +TIGV+F RTV +K QI
Sbjct: 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 78
Query: 62 WDTAGQERFRTITSSYYRGAHGIIV 86
WDTAG ER+R ITS+YYRGA G ++
Sbjct: 79 WDTAGLERYRAITSAYYRGAVGALL 103
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 92.4 bits (228), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 60/84 (71%)
Query: 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
+Y+++FK++LIG+SGVGK+ LL RF + + +TIGV+F RTV +K QIW
Sbjct: 5 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 64
Query: 63 DTAGQERFRTITSSYYRGAHGIIV 86
DTAG ER+R ITS+YYRGA G ++
Sbjct: 65 DTAGLERYRAITSAYYRGAVGALL 88
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
+FK+++IGDS VGK+CL RF + + +TIGVDF+ R V+ DG+ IK+Q+WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 68 ERFR-TITSSYYRGAHGII 85
ERFR ++ YYR H ++
Sbjct: 80 ERFRKSMVQHYYRNVHAVV 98
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 63/93 (67%), Gaps = 10/93 (10%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTV--------EQDGK 55
+YDYL KLL +GDSGVGK+ L R+ D+ + +I+T+G+DF+ + V GK
Sbjct: 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 56 TIK--LQIWDTAGQERFRTITSSYYRGAHGIIV 86
K LQ+WDTAGQERFR++T++++R A G ++
Sbjct: 81 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLL 113
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 63/93 (67%), Gaps = 10/93 (10%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD--------GK 55
+YDYL KLL +GDSGVGK+ L R+ D+ + +I+T+G+DF+ + V D GK
Sbjct: 7 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 56 TIK--LQIWDTAGQERFRTITSSYYRGAHGIIV 86
K LQ+WDTAG ERFR++T++++R A G ++
Sbjct: 67 AFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLL 99
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 63/93 (67%), Gaps = 10/93 (10%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD--------GK 55
+YDYL KLL +GDSGVGK+ L R+ D+ + +I+T+G+DF+ + V D GK
Sbjct: 7 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 56 TIK--LQIWDTAGQERFRTITSSYYRGAHGIIV 86
K LQ+WDTAG ERFR++T++++R A G ++
Sbjct: 67 AFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLL 99
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 58/78 (74%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+K++L GD+ VGKS L+R + + E+ +T+GVDF+++T+ DG+ LQ+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 69 RFRTITSSYYRGAHGIIV 86
RFR+I SY+R A G+++
Sbjct: 89 RFRSIAKSYFRKADGVLL 106
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 63/93 (67%), Gaps = 10/93 (10%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD--------GK 55
+YDYL KLL +GDSGVGK+ L R+ D+ + +I+T+G+DF+ + V D GK
Sbjct: 7 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 56 TIK--LQIWDTAGQERFRTITSSYYRGAHGIIV 86
K LQ+WDTAG ERFR++T++++R A G ++
Sbjct: 67 AFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLL 99
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 63/93 (67%), Gaps = 10/93 (10%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD--------GK 55
+YDYL KLL +GDSGVGK+ L R+ D+ + +I+T+G+DF+ + V D GK
Sbjct: 7 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 56 TIK--LQIWDTAGQERFRTITSSYYRGAHGIIV 86
K LQ+WDTAG ERFR++T++++R A G ++
Sbjct: 67 AFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLL 99
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 52/78 (66%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +TV D T+K +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 69 RFRTITSSYYRGAHGIIV 86
R+ ++ YYRGA IV
Sbjct: 68 RYHSLAPXYYRGAQAAIV 85
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 52/78 (66%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +TV D T+K +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 69 RFRTITSSYYRGAHGIIV 86
R+ ++ YYRGA IV
Sbjct: 68 RYHSLAPMYYRGAQAAIV 85
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 52/78 (66%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +TV D T+K +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 69 RFRTITSSYYRGAHGIIV 86
R+ ++ YYRGA IV
Sbjct: 64 RYHSLAPMYYRGAQAAIV 81
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 52/78 (66%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +TV D T+K +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFRTITSSYYRGAHGIIV 86
R+ ++ YYRGA IV
Sbjct: 67 RYHSLAPMYYRGAQAAIV 84
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gtp
Length = 170
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 52/78 (66%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +TV D T+K +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFRTITSSYYRGAHGIIV 86
R+ ++ YYRGA IV
Sbjct: 67 RYHSLAPMYYRGAQAAIV 84
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex
With Gppnhp
Length = 170
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 52/78 (66%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +TV D T+K +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFRTITSSYYRGAHGIIV 86
R+ ++ YYRGA IV
Sbjct: 67 RYHSLAPMYYRGAQAAIV 84
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 52/77 (67%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+L+GD G GKS L+LRF D ++E STIG F +T+ + T+K +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 70 FRTITSSYYRGAHGIIV 86
+ ++ YYRGA I+
Sbjct: 74 YHSLAPMYYRGAAAAII 90
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex
With Gppnhp
Length = 170
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 52/78 (66%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +TV D T+K +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFRTITSSYYRGAHGIIV 86
R+ ++ YYRGA IV
Sbjct: 67 RYHSLAPMYYRGAQAAIV 84
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 52/78 (66%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F ++V D T+K +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 69 RFRTITSSYYRGAHGIIV 86
R+ ++ YYRGA IV
Sbjct: 69 RYHSLAPMYYRGAQAAIV 86
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex
With Gppnhp
Length = 170
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 52/78 (66%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +TV D T+K +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFRTITSSYYRGAHGIIV 86
R+ ++ YYRGA IV
Sbjct: 67 RYHSLAPMYYRGAQAAIV 84
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex
With Gppnhp
Length = 170
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 52/78 (66%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +TV D T+K +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFRTITSSYYRGAHGIIV 86
R+ ++ YYRGA IV
Sbjct: 67 RYHSLAPMYYRGAQAAIV 84
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-KTIKL 59
M+ + K++++GDSGVGK+ L+ R+ +D Y + Y +TIG DF + V DG K +
Sbjct: 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 60 QIWDTAGQERFRTITSSYYRGAHGIIV 86
Q+WDTAGQERF+++ ++YRGA ++
Sbjct: 61 QVWDTAGQERFQSLGVAFYRGADCCVL 87
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 56/78 (71%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+ +G+ VGK+ L+ RF DS+ +Y +TIG+DF +T+ + +TI+LQ+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 69 RFRTITSSYYRGAHGIIV 86
RFR++ SY R + +V
Sbjct: 67 RFRSLIPSYIRDSAAAVV 84
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 51/78 (65%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STI F +TV D T+K +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 69 RFRTITSSYYRGAHGIIV 86
R+ ++ YYRGA IV
Sbjct: 66 RYHSLAPMYYRGAQAAIV 83
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 55/79 (69%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L K++L+GD GVGKS L+ R+ + + TIGV+F R +E DG+ + LQIWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 68 ERFRTITSSYYRGAHGIIV 86
ERF+++ + +YRGA ++
Sbjct: 67 ERFKSLRTPFYRGADCCLL 85
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 51/78 (65%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +TV D T+K +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 69 RFRTITSSYYRGAHGIIV 86
R+ ++ YYRGA IV
Sbjct: 66 RYHSLAPMYYRGAQAAIV 83
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The
C2h2 Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The
C2h2 Zinc Finger Of Eea1
Length = 168
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 51/78 (65%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +TV D T+K +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 69 RFRTITSSYYRGAHGIIV 86
R+ ++ YYRGA IV
Sbjct: 66 RYHSLAPMYYRGAQAAIV 83
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 53/74 (71%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
LFK++L+GD GVGKS L+ R+ + + TIGV+F + +E DG + +QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 68 ERFRTITSSYYRGA 81
ERFR++ + +YRG+
Sbjct: 71 ERFRSLRTPFYRGS 84
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase:
A Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase:
A Novel Antiviral Drug Target
Length = 177
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 55/79 (69%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
LFK++L+GD GVGKS L+ R+ + + TIGV+F + +E DG + +QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 68 ERFRTITSSYYRGAHGIIV 86
ERFR++ + +YRG+ ++
Sbjct: 67 ERFRSLRTPFYRGSDCCLL 85
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A
Dimer With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A
Dimer With An Active Conformation Of Switch Ii
Length = 177
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 53/74 (71%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
LFK++L+GD GVGKS L+ R+ + + TIGV+F + +E DG + +QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 68 ERFRTITSSYYRGA 81
ERFR++ + +YRG+
Sbjct: 69 ERFRSLRTPFYRGS 82
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 61/93 (65%), Gaps = 10/93 (10%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ----------D 53
+YDYL K L +GDSGVGK+ +L ++ D + +I+T+G+DF+ + V
Sbjct: 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGR 66
Query: 54 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86
G+ I LQ+WDTAG ERFR++T++++R A G ++
Sbjct: 67 GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLL 99
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 56/78 (71%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+ +G+ VGK+ L+ RF DS+ +Y +TIG+DF +T+ + +T++LQ+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 69 RFRTITSSYYRGAHGIIV 86
RFR++ SY R + +V
Sbjct: 62 RFRSLIPSYIRDSTVAVV 79
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 56/78 (71%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+ +G+ VGK+ L+ RF DS+ +Y +TIG+DF +T+ + +T++LQ+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIV 86
RFR++ SY R + +V
Sbjct: 63 RFRSLIPSYIRDSTVAVV 80
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
Length = 179
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 56/78 (71%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+ +G+ VGK+ L+ RF DS+ +Y +TIG+DF +T+ + +T++LQ+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 69 RFRTITSSYYRGAHGIIV 86
RFR++ SY R + +V
Sbjct: 75 RFRSLIPSYIRDSTVAVV 92
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 55/78 (70%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+ +G+ VGK+ L+ RF DS+ +Y +TIG+DF +T+ + +TI+LQ+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 69 RFRTITSSYYRGAHGIIV 86
RFR++ SY R + +V
Sbjct: 74 RFRSLIPSYIRDSAAAVV 91
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K+ L+GD+GVGKS ++ RF +DS+ + TIG F +TV+ + K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 69 RFRTITSSYYRG-AHGIIVGD 88
RFR + YYRG A IIV D
Sbjct: 66 RFRALAPMYYRGSAAAIIVYD 86
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 56/86 (65%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
M L K++++GDSGVGK+ L+ ++ + + Y +TIG DF + V D + + +Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIV 86
IWDTAGQERF+++ ++YRGA ++
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVL 86
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 56/86 (65%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
M L K++++GDSGVGK+ L+ ++ + + Y +TIG DF + V D + + +Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIV 86
IWDTAGQERF+++ ++YRGA ++
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVL 86
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 56/86 (65%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
M L K++++GDSGVGK+ L+ ++ + + Y +TIG DF + V D + + +Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIV 86
IWDTAGQERF+++ ++YRGA ++
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVL 86
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6
Complexed With Gdp
Length = 162
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 54/78 (69%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+ +G+ VGK+ ++ RF D++ +Y STIG+DF +T+ D ++LQ+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 69 RFRTITSSYYRGAHGIIV 86
RFR++ SY R + IV
Sbjct: 62 RFRSLIPSYIRDSAAAIV 79
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 55/78 (70%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+ +G+ VGK+ L+ RF DS+ +Y +TIG+DF +T+ + +T++LQ+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 69 RFRTITSSYYRGAHGIIV 86
RFR++ SY R + +V
Sbjct: 67 RFRSLIPSYIRDSTVAVV 84
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 50/77 (64%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+L+G++ VGKS ++LRF + + E+ TIG F + V + T+K +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 70 FRTITSSYYRGAHGIIV 86
F ++ YYR A +V
Sbjct: 65 FASLAPXYYRNAQAALV 81
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 55/78 (70%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+ +G+ VGK+ L+ RF DS+ +Y +TIG+DF +T+ + +T++LQ+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 69 RFRTITSSYYRGAHGIIV 86
RFR++ SY R + +V
Sbjct: 77 RFRSLIPSYIRDSTVAVV 94
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K+ L+GD+GVGKS ++ RF +DS+ + TIG F +TV+ + K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 69 RFRTITSSYYRG-AHGIIVGD 88
RFR + YYRG A IIV D
Sbjct: 67 RFRALAPMYYRGSAAAIIVYD 87
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
Y FK++L+G+ VGK+ L+LR+ ++ + + +I+T+G F + + GK + L IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 67 QERFRTITSSYYRGAHGIIV 86
QERF + YYR ++G I+
Sbjct: 65 QERFHALGPIYYRDSNGAIL 84
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 55/86 (63%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
M L K++++GDSGVGK+ L+ ++ + + Y +TIG DF + V D + + +Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIV 86
IWDTAG ERF+++ ++YRGA ++
Sbjct: 61 IWDTAGLERFQSLGVAFYRGADCCVL 86
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K+ L+GD+GVGKS ++ RF D + + TIG F +TV + K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 69 RFRTITSSYYRGAHGIIV 86
RF ++ YYRG+ ++
Sbjct: 84 RFHSLAPMYYRGSAAAVI 101
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space
Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1)
Space Group
Length = 168
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 51/77 (66%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K++++G+ VGKS ++ R+ + + Y TIGVDF R ++ + + ++L +WDTAGQE
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 70 FRTITSSYYRGAHGIIV 86
F IT +YYRGA ++
Sbjct: 67 FDAITKAYYRGAQACVL 83
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
Y FK++L+G+ VGK+ L+LR+ ++ + + +I+T+ F + + GK + L IWDTAG
Sbjct: 19 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 67 QERFRTITSSYYRGAHGIIV 86
QERF + YYR ++G I+
Sbjct: 79 QERFHALGPIYYRDSNGAIL 98
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66
Y FK++L+G+ VGK+ L+LR+ ++ + + +I+T+ F + + GK + L IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 67 QERFRTITSSYYRGAHGIIV 86
QERF + YYR ++G I+
Sbjct: 65 QERFHALGPIYYRDSNGAIL 84
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIG-VDFKIRTVEQDGKTIKLQIWDTAGQ 67
+K+ LIGD GVGK+ + R D + ++Y +T+G V+ + ++ G IK +WDTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 68 ERFRTITSSYYRGAHGIIV 86
E+ + YY GA G I+
Sbjct: 72 EKKAVLKDVYYIGASGAIL 90
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ I +E DGK ++L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 69 --RFRTIT 74
R R ++
Sbjct: 86 YDRLRPLS 93
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ I +E DGK ++L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 69 --RFRTIT 74
R R ++
Sbjct: 86 YDRLRPLS 93
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp
(Complex C)
Length = 185
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 69
Query: 69 --RFRTIT 74
R R ++
Sbjct: 70 YDRLRPLS 77
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 69 --RFRTIT 74
R R ++
Sbjct: 68 YDRLRPLS 75
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 69 --RFRTIT 74
R R ++
Sbjct: 67 YDRLRPLS 74
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 69 --RFRTIT 74
R R ++
Sbjct: 68 YDRLRPLS 75
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 69 --RFRTIT 74
R R ++
Sbjct: 67 YDRLRPLS 74
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 68
Query: 69 --RFRTIT 74
R R ++
Sbjct: 69 YDRLRPLS 76
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 69 --RFRTIT 74
R R ++
Sbjct: 68 YDRLRPLS 75
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 69 --RFRTIT 74
R R ++
Sbjct: 66 YDRLRPLS 73
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85
Query: 69 --RFRTIT 74
R R ++
Sbjct: 86 YDRLRPLS 93
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
K + +GD VGK+C+L+ + +++ Y+ T+ +F V DG T+ L +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQ 64
Query: 68 ERFRTITSSYYRGAHGIIVG 87
E + + YRGA I+
Sbjct: 65 EDYNRLRPLSYRGADVFILA 84
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y++T+GV+ + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFRTITSSYYRGAHGIIV 86
+F + YY A I+
Sbjct: 71 KFGGLEDGYYIQAQCAII 88
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
K + +GD VGK+CLL+ + +++ Y+ T+ +F V +G T+ L +WDTAGQ
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQ 66
Query: 68 ERFRTITSSYYRGAHGIIVG 87
E + + YRGA I+
Sbjct: 67 EDYNRLRPLSYRGADVFILA 86
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y++T+GV+ + IK +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 69 RFRTITSSYYRGAHGIIV 86
+F + YY A I+
Sbjct: 76 KFGGLRDGYYIQAQCAII 93
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y++T+GV+ + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFRTITSSYYRGAHGIIV 86
+F + YY A I+
Sbjct: 71 KFGGLRDGYYIQAQCAII 88
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
Length = 216
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y++T+GV+ + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFRTITSSYYRGAHGIIV 86
+F + YY A I+
Sbjct: 71 KFGGLRDGYYIQAQCAII 88
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y++T+GV+ + IK +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 69 RFRTITSSYYRGAHGIIV 86
+F + YY A I+
Sbjct: 64 KFGGLRDGYYIQAQCAII 81
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y++T+GV+ + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFRTITSSYYRGAHGIIV 86
+F + YY A I+
Sbjct: 71 KFGGLRDGYYIQAQCAII 88
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With
Its Cargo (Kap60p) And Rangtp
Length = 176
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y++T+GV+ + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFRTITSSYYRGAHGIIV 86
+F + YY A I+
Sbjct: 71 KFGGLRDGYYIQAQCAII 88
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y+ T+GV+ + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFRTITSSYYRGAHGIIV 86
+F + YY A I+
Sbjct: 71 KFGGLRDGYYIQAQCAII 88
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals
A Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L K++++G GVGKS L L+F D ++E Y T ++ + V DG+ +++ I DTAGQ
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 76
Query: 68 ERFRTITSSYYRGAHGII 85
E + I +Y+R G +
Sbjct: 77 EDYAAIRDNYFRSGEGFL 94
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L K++++G GVGKS L L+F D ++E Y T ++ + V DG+ +++ I DTAGQ
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 64
Query: 68 ERFRTITSSYYRGAHGII 85
E + I +Y+R G +
Sbjct: 65 EDYAAIRDNYFRSGEGFL 82
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone
Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone
Complex
Length = 180
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
K + +GD VGK+C+L+ + +++ Y+ T+ +F V DG T+ L +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
Query: 68 ERFRTITSSYYRGA 81
E + + YRGA
Sbjct: 65 EDYNRLRPLSYRGA 78
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
Length = 168
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L K++++G GVGKS L L+F D ++E Y T ++ + V DG+ +++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 68 ERFRTITSSYYRGAHGII 85
E + I +Y+R G +
Sbjct: 63 EDYAAIRDNYFRSGEGFL 80
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y+ T+GV+ + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFRTITSSYYRGAHGIIV 86
+F + YY A I+
Sbjct: 71 KFGGLRDGYYIQAQCAII 88
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L K++++G GVGKS L L+F D ++E Y T ++ + V DG+ +++ I DTAGQ
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 68 ERFRTITSSYYRGAHGII 85
E + I +Y+R G +
Sbjct: 73 EDYAAIRDNYFRSGEGFL 90
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K++L+GD G GK+ LL+ FAD ++ ESY T+ + + ++ GK + L IWDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 70 FRTITSSYYRGA 81
+ + +Y A
Sbjct: 95 YDRLRPLFYPDA 106
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed
With Gdp
Length = 180
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ F+ D + Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 70 F 70
+
Sbjct: 66 Y 66
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
KL+++GD GK+CLL+ + D + E Y+ T+ ++ I +E DGK ++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 65
Query: 69 --RFRTIT 74
R R ++
Sbjct: 66 YDRLRPLS 73
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
KL+++GD GK+CLL+ + D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 69 --RFRTIT 74
R R ++
Sbjct: 66 YDRLRPLS 73
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
KL+++GD GK+CLL+ + D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 69 --RFRTIT 74
R R ++
Sbjct: 64 YDRLRPLS 71
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
KL+++GD GK+CLL+ + D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 69 --RFRTIT 74
R R ++
Sbjct: 64 YDRLRPLS 71
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y++T+GV+ + IK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFRTITSSYYRGAHGIIV 86
++ + YY A I+
Sbjct: 71 KYGGLRDGYYIQAQCAII 88
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
KL+++GD GK+CLL+ + D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 69 --RFRTIT 74
R R ++
Sbjct: 66 YDRLRPLS 73
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With
Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
KL+++GD GK+CLL+ + D + E Y+ T+ ++ + +E DGK ++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 69 --RFRTIT 74
R R ++
Sbjct: 66 YDRLRPLS 73
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + Y++T+GV+ + IK +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 69 RFRTITSSYYRGAHGIIV 86
+F + YY A I+
Sbjct: 76 KFGGLRDGYYIQAQCAII 93
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
K + +GD VGK+C+L+ + + + YI T+ +F V DG+ + L +WDTAGQ
Sbjct: 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQ 67
Query: 68 ERFRTITSSYYRGA 81
E + + YRGA
Sbjct: 68 EDYSRLRPLSYRGA 81
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + YI+TIGV+ + + IK +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 69 RFRTITSSYYRGAHGIIV 86
+F + YY A I+
Sbjct: 73 KFGGLRDGYYINAQCAII 90
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + YI+TIGV+ + + IK +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 69 RFRTITSSYYRGAHGIIV 86
+F + YY A I+
Sbjct: 66 KFGGLRDGYYINAQCAII 83
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y++T+GV+ + IK +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 69 RFRTITSSYYRGAHGIIV 86
+F + YY A I+
Sbjct: 71 KFGGLRDGYYIQAQCAII 88
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y++T+GV+ + IK +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 69 RFRTITSSYYRGAHGIIV 86
+F + YY A I+
Sbjct: 73 KFGGLRDGYYIQAQCAII 90
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + YI+TIGV+ + + IK +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 69 RFRTITSSYYRGAHGIIV 86
+F + YY A I+
Sbjct: 65 KFGGLRDGYYINAQCAII 82
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal Ii)
Length = 176
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + Y++T+GV+ + IK +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 69 RFRTITSSYYRGAHGIIV 86
+F + YY A I+
Sbjct: 67 KFGGLRDGYYIQAQCAII 84
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L K++++G GVGKS L L+F D ++E Y T ++ + V DG+ +++ I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 68 ERFRTITSSYYRGAHGIIV 86
E + I +Y+R G ++
Sbjct: 62 EDYAAIRDNYFRSGEGFLL 80
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L K++++G GVGKS L L+F D ++E Y T ++ + V DG+ +++ I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 68 ERFRTITSSYYRGAHGIIV 86
E + I +Y+R G ++
Sbjct: 66 EDYAAIRDNYFRSGEGFLL 84
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L K++++G GVGKS L L+F D ++E Y T ++ + V DG+ +++ I DTAG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 68 ERFRTITSSYYRGAHGII 85
E + I +Y+R G +
Sbjct: 65 EDYAAIRDNYFRSGEGFL 82
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
KL+++GD GK+CLL+ + D + E Y+ T+ ++ + +E DGK ++L +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED 68
Query: 69 --RFRTIT 74
R R ++
Sbjct: 69 YDRLRPLS 76
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 37/115 (32%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVE----------------- 51
+K +L+G+S VGKS ++LR D++ E+ +TIG F V
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 52 --------------------QDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86
++ IK IWDTAGQER+ +I YYRGA IV
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ + + E Y+ T+ ++ + VE DG+ ++L +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGRRVELALWDTAGQED 70
Query: 70 FRTITSSYYRGAHGIIV 86
+ + Y ++ +++
Sbjct: 71 YDRLRPLSYPDSNVVLI 87
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
+ K +++GD VGK+CLL+ +A+D++ E Y+ T+ D +V GK L ++DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 68 E---RFRTIT 74
E R R ++
Sbjct: 77 EDYDRLRPLS 86
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
M+P + K++++GDS GK+ LL FA D + E+Y+ T+ ++ + E D + I+L
Sbjct: 16 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELS 74
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIV 86
+WDT+G + + Y + +++
Sbjct: 75 LWDTSGSPYYDNVRPLSYPDSDAVLI 100
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ 60
M+P + K++++GDS GK+ LL FA D + E+Y+ T+ ++ + E D + I+L
Sbjct: 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELS 79
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIV 86
+WDT+G + + Y + +++
Sbjct: 80 LWDTSGSPYYDNVRPLSYPDSDAVLI 105
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 66
Query: 69 ---RFRTIT 74
R R ++
Sbjct: 67 DYDRLRPLS 75
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 64
Query: 69 ---RFRTIT 74
R R ++
Sbjct: 65 DYDRLRPLS 73
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of
The Vav1 Exchange Factor
Length = 184
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69 ---RFRTIT 74
R R ++
Sbjct: 63 DYDRLRPLS 71
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69 ---RFRTIT 74
R R ++
Sbjct: 63 DYDRLRPLS 71
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 64
Query: 69 ---RFRTIT 74
R R ++
Sbjct: 65 DYDRLRPLS 73
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQED 90
Query: 69 --RFRTIT 74
R R ++
Sbjct: 91 YDRLRPLS 98
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 69 ---RFRTIT 74
R R ++
Sbjct: 63 DYDRLRPLS 71
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In
Complex With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In
Complex With Rac1 (T17n Mutant)
Length = 184
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ D V DGK + L +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 69
Query: 69 ---RFRTIT 74
R R ++
Sbjct: 70 DYDRLRPLS 78
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain
Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain
Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69 ---RFRTIT 74
R R ++
Sbjct: 63 DYDRLRPLS 71
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 69 ---RFRTIT 74
R R ++
Sbjct: 64 DYDRLRPLS 72
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C
Beta 2
Length = 178
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69 ---RFRTIT 74
R R ++
Sbjct: 63 DYDRLRPLS 71
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 69 ---RFRTIT 74
R R ++
Sbjct: 64 DYDRLRPLS 72
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 69 ---RFRTIT 74
R R ++
Sbjct: 63 DYDRLRPLS 71
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69 ---RFRTIT 74
R R ++
Sbjct: 63 DYDRLRPLS 71
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 69 ---RFRTIT 74
R R ++
Sbjct: 63 DYDRLRPLS 71
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 24 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQED 82
Query: 69 --RFRTIT 74
R R ++
Sbjct: 83 YDRLRPLS 90
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 69 --RFRTIT 74
R R ++
Sbjct: 64 YDRLRPLS 71
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQED 73
Query: 69 --RFRTIT 74
R R ++
Sbjct: 74 YDRLRPLS 81
>pdb|1CLU|A Chain A, H-Ras Complexed With
Diaminobenzophenone-Beta,Gamma-Imido- Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + ++ YI T+ ++ V DGK + L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 89
Query: 69 ---RFRTIT 74
R R ++
Sbjct: 90 DYDRLRPLS 98
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++F ++E Y TI ++ + VE D + L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 69 RFRTITSSYYRGAHG 83
+F + Y + G
Sbjct: 63 QFTAMRDLYMKNGQG 77
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 64 EYSAMRDQYMRTGEGFL 80
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 64 EYSAMRDQYMRTGEGFL 80
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK-TIKLQIWDTAGQ 67
K++++GD GK+ L FA +++ + Y TIG+DF +R + G + LQIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 68 ERFRTITSSYYRGAHGIIV 86
+ Y GA G+++
Sbjct: 67 TIGGKMLDKYIYGAQGVLL 85
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++F ++E Y TI ++ + VE D + L+I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 69 RFRTITSSYYRGAHG 83
+F + Y + G
Sbjct: 65 QFTAMRDLYMKNGQG 79
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 52.4 bits (124), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 68 ERF 70
E +
Sbjct: 214 EDY 216
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 52.0 bits (123), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 68 ERF 70
E +
Sbjct: 214 EDY 216
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 52.0 bits (123), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 68 ERF 70
E +
Sbjct: 214 EDY 216
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++F ++E Y TI ++ + VE D + L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 69 RFRTITSSYYRGAHG 83
+F + Y + G
Sbjct: 63 QFTAMRDLYMKNGQG 77
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V D K + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 62
Query: 69 ---RFRTIT 74
R R ++
Sbjct: 63 DYDRLRPLS 71
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V D K + L +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 68
Query: 69 ---RFRTIT 74
R R ++
Sbjct: 69 DYDRLRPLS 77
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V D K + L +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 69
Query: 69 ---RFRTIT 74
R R ++
Sbjct: 70 DYDRLRPLS 78
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAG E
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLED 90
Query: 69 --RFRTIT 74
R R ++
Sbjct: 91 YDRLRPLS 98
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 65
Query: 69 ---RFRTIT 74
R R ++
Sbjct: 66 DYDRLRPLS 74
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 69 ---RFRTIT 74
R R ++
Sbjct: 63 DYDRLRPLS 71
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex
With Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK + L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 69 ---RFRTIT 74
R R ++
Sbjct: 63 DYDRLRPLS 71
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K++++GDS GK+ LL FA D + E+Y+ T+ ++ + E D + I+L +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 67
Query: 70 FRTITSSYYRGAHGIIV 86
+ + Y + +++
Sbjct: 68 YDNVRPLSYPDSDAVLI 84
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++F +++ Y TI ++ + VE D + L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 69 RFRTITSSYYRGAHG 83
+F + Y + G
Sbjct: 63 QFTAMRDLYMKNGQG 77
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K++++GD VGK+CLLL F+ +Y+ T+ +F ++ + L +WDTAGQE
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQE 82
Query: 69 RF 70
+
Sbjct: 83 EY 84
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K +L+GD VGK+ L++ + + Y YI T +F V DG+ ++LQ+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDE 80
Query: 70 F 70
F
Sbjct: 81 F 81
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G G GK+ +L + I + I TIG F + TV+ K I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETVQY--KNISFTVWDVGGQD 72
Query: 69 RFRTITSSYYRGAHGII 85
R R++ YYR G+I
Sbjct: 73 RIRSLWRHYYRNTEGVI 89
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
Length = 164
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G G GK+ +L + I + I TIG F + TV+ K I +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETVQY--KNISFTVWDVGGQD 55
Query: 69 RFRTITSSYYRGAHGII 85
R R++ YYR G+I
Sbjct: 56 RIRSLWRHYYRNTEGVI 72
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
K++++GD VGK+CLLL F+ +Y+ T+ +F ++ + L +WDTAGQE
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQE 81
Query: 69 RF 70
+
Sbjct: 82 EY 83
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G G GK+ +L + I + I TIG F + TV+ K I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETVQY--KNISFTVWDVGGQD 72
Query: 69 RFRTITSSYYRGAHGII 85
R R++ YYR G+I
Sbjct: 73 RIRSLWRHYYRNTEGVI 89
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+L+GD GK+ +L A D Y E+Y+ T+ ++ +E + + ++L +WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSPY 87
Query: 70 FRTITSSYYRGAHGIIV 86
+ + Y + +++
Sbjct: 88 YDNVRPLCYSDSDAVLL 104
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+L+GD GK+ +L A D Y E+Y+ T+ ++ +E + + ++L +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSPY 71
Query: 70 FRTITSSYYRGAHGIIV 86
+ + Y + +++
Sbjct: 72 YDNVRPLCYSDSDAVLL 88
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+L L+G GK+ + A + E I T+G F +R V + TIK IWD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQP 78
Query: 69 RFRTITSSYYRGAHGII 85
RFR++ Y RG + I+
Sbjct: 79 RFRSMWERYCRGVNAIV 95
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
KL+L+GD GK+ +L A D Y E+Y+ T+ ++ +E + + ++L +WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 70
Query: 70 FRTITSSYYRGAHGIIV 86
+ + Y + +++
Sbjct: 71 YDNVRPLCYSDSDAVLL 87
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+L L+G GK+ + A + E I T+G F +R + + TIKL WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 87
Query: 69 RFRTITSSYYRGAHGII 85
RFR++ Y RG I+
Sbjct: 88 RFRSMWERYCRGVSAIV 104
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+L L+G GK+ + A + E I T+G F +R + + TIKL WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 78
Query: 69 RFRTITSSYYRGAHGII 85
RFR++ Y RG I+
Sbjct: 79 RFRSMWERYCRGVSAIV 95
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 69 --RFRTIT 74
R R ++
Sbjct: 64 YDRLRPLS 71
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal
Domain Sopb In Complex With Cdc42
Length = 193
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 73
Query: 69 --RFRTIT 74
R R ++
Sbjct: 74 YDRLRPLS 81
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 69 --RFRTIT 74
R R ++
Sbjct: 67 YDRLRPLS 74
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 69 --RFRTIT 74
R R ++
Sbjct: 67 YDRLRPLS 74
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 69 --RFRTIT 74
R R ++
Sbjct: 66 YDRLRPLS 73
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In
Complex With Cdc42 (T17n Mutant)
Length = 195
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 12 KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 70
Query: 69 --RFRTIT 74
R R ++
Sbjct: 71 YDRLRPLS 78
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain
Of The Salmonella Typhimurium Sope Toxin And Human
Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain
Of The Salmonella Typhimurium Sope Toxin And Human
Cdc42
Length = 180
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 69 --RFRTIT 74
R R ++
Sbjct: 66 YDRLRPLS 73
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 69 --RFRTIT 74
R R ++
Sbjct: 64 YDRLRPLS 71
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
Length = 177
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 69 --RFRTIT 74
R R ++
Sbjct: 64 YDRLRPLS 71
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 69 --RFRTIT 74
R R ++
Sbjct: 64 YDRLRPLS 71
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 12 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 70
Query: 69 --RFRTIT 74
R R ++
Sbjct: 71 YDRLRPLS 78
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 69 --RFRTIT 74
R R ++
Sbjct: 64 YDRLRPLS 71
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 69 --RFRTIT 74
R R ++
Sbjct: 68 YDRLRPLS 75
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 69 --RFRTIT 74
R R ++
Sbjct: 64 YDRLRPLS 71
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 64
Query: 69 --RFRTIT 74
R R ++
Sbjct: 65 YDRLRPLS 72
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 69 --RFRTIT 74
R R ++
Sbjct: 64 YDRLRPLS 71
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 69 --RFRTIT 74
R R ++
Sbjct: 64 YDRLRPLS 71
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 69 --RFRTIT 74
R R ++
Sbjct: 64 YDRLRPLS 71
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+++ + G GVGKS L+LRF ++ ESYI T+ ++ + + D LQI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 69 RFRTITSSYYRGAHGIIV 86
+F + H I+
Sbjct: 63 QFPAMQRLSISKGHAFIL 80
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
++L++G GK+ +L + + + I T+G F + TV K +K +WD GQ++
Sbjct: 324 RILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGQDK 378
Query: 70 FRTITSSYYRGAHGII 85
R + YY G G+I
Sbjct: 379 IRPLWRHYYTGTQGLI 394
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+LL++G GK+ +L +F + I++ T+G F I+T+E G KL IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGED-IDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 71
Query: 69 RFRTITSSYYRGAHGII 85
R+ +Y+ G+I
Sbjct: 72 SLRSYWRNYFESTDGLI 88
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein,
Rras, In The Gdp- Bound State
Length = 181
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDF-KIRTVEQDGKTIKL 59
M+P KL+++G GVGKS L ++F ++ Y TI + KI +V DG +L
Sbjct: 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSV--DGIPARL 59
Query: 60 QIWDTAGQERFRTITSSYYRGAHGIIV 86
I DTAGQE F + Y R HG ++
Sbjct: 60 DILDTAGQEEFGAMREQYMRAGHGFLL 86
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+LL++G GK+ +L +F + +++ T+G F I+T+E G KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73
Query: 69 RFRTITSSYYRGAHGII 85
R+ +Y+ G+I
Sbjct: 74 SLRSYWRNYFESTDGLI 90
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+LL++G GK+ +L +F + +++ T+G F I+T+E G KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73
Query: 69 RFRTITSSYYRGAHGII 85
R+ +Y+ G+I
Sbjct: 74 SLRSYWRNYFESTDGLI 90
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between
Cdc42 And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between
Cdc42 And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L + DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQED 63
Query: 69 --RFRTIT 74
R R ++
Sbjct: 64 YDRLRPLS 71
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 69 --RFRTIT 74
R R ++
Sbjct: 64 YDRLRPLS 71
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
++L++G GK+ +L + + + I TIG F + TVE K I +WD GQ++
Sbjct: 167 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 221
Query: 70 FRTITSSYYRGAHGII 85
R + Y++ G+I
Sbjct: 222 IRPLWRHYFQNTQGLI 237
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + + Y+ + ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 69 --RFRTIT 74
R R ++
Sbjct: 64 YDRLRPLS 71
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I T+G F + TV K +K +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGQD 55
Query: 69 RFRTITSSYYRGAHGII 85
+ R + YY G G+I
Sbjct: 56 KIRPLWRHYYTGTQGLI 72
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+,
And Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I T+G F + TV K +K +WD GQ+
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGQD 68
Query: 69 RFRTITSSYYRGAHGII 85
+ R + YY G G+I
Sbjct: 69 KIRPLWRHYYTGTQGLI 85
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I T+G F + TV K +K +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGQD 55
Query: 69 RFRTITSSYYRGAHGII 85
+ R + YY G G+I
Sbjct: 56 KIRPLWRHYYTGTQGLI 72
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I T+G F + TV K +K +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGQD 67
Query: 69 RFRTITSSYYRGAHGII 85
+ R + YY G G+I
Sbjct: 68 KIRPLWRHYYTGTQGLI 84
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQE 68
K+ ++G VGKS L ++F + +++SY TI F K+ TV +G+ LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV--NGQEYHLQLVDTAGQD 65
Query: 69 RFRTITSSYYRGAHGIIV 86
+ +Y +G I+
Sbjct: 66 EYSIFPQTYSIDINGYIL 83
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I TIG F + TVE K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNICFTVWDVGGQD 72
Query: 69 RFRTITSSYYRGAHGII 85
R R + Y++ G+I
Sbjct: 73 RIRPLWKHYFQNTQGLI 89
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQE 68
K+ ++G VGKS L ++F + +++SY TI F K+ TV +G+ LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV--NGQEYHLQLVDTAGQD 65
Query: 69 RFRTITSSYYRGAHGIIV 86
+ +Y +G I+
Sbjct: 66 EYSIFPQTYSIDINGYIL 83
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 42.7 bits (99), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I TIG F + TVE K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
Query: 69 RFRTITSSYYRGAHGII 85
+ R + YY+ II
Sbjct: 73 KIRPLWRHYYQNTQAII 89
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To
Gdp
Length = 169
Score = 42.7 bits (99), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQE 68
K+ ++G VGKS L ++F + +++SY TI F K+ TV +G+ LQ+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV--NGQEYHLQLVDTAGQD 60
Query: 69 RFRTITSSYYRGAHGIIV 86
+ +Y +G I+
Sbjct: 61 EYSIFPQTYSIDINGYIL 78
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed
With Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain
Carrying The Mutation Of The Catalytic Glutamate To
Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I TIG F + TVE K I +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 55
Query: 69 RFRTITSSYYRGAHGII 85
+ R + Y++ G+I
Sbjct: 56 KIRPLWRHYFQNTQGLI 72
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 69 --RFRTIT 74
R R ++
Sbjct: 64 YDRLRPLS 71
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE- 68
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAG E
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 67
Query: 69 --RFRTIT 74
R R ++
Sbjct: 68 YDRLRPLS 75
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Monomeric Crystal Form
Length = 181
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I TIG F + TVE K I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
Query: 69 RFRTITSSYYRGAHGII 85
+ R + Y++ G+I
Sbjct: 73 KIRPLWRHYFQNTQGLI 89
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I TIG F + TVE K I +WD GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 71
Query: 69 RFRTITSSYYRGAHGII 85
+ R + Y++ G+I
Sbjct: 72 KIRPLWRHYFQNTQGLI 88
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
+ +LL++G GK+ +L +F + +++ T+G F I+T+E G KL IWD G
Sbjct: 1 MLRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGL 55
Query: 68 ERFRTITSSYYRGAHGII 85
+ R+ +Y+ G+I
Sbjct: 56 KSLRSYWRNYFESTDGLI 73
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I TIG F + TVE K I +WD GQ+
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 75
Query: 69 RFRTITSSYYRGAHGII 85
+ R + Y++ G+I
Sbjct: 76 KIRPLWRHYFQNTQGLI 92
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 20 GKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR 79
GKS L ++F ++IE Y TI DF + +E D L+I DTAG E+F ++ Y +
Sbjct: 15 GKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIK 73
Query: 80 GAHGIIV 86
G I+
Sbjct: 74 NGQGFIL 80
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
++L +G GK+ +L + + + I T+G F + TV K +K +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGQDK 56
Query: 70 FRTITSSYYRGAHGII 85
R + YY G G+I
Sbjct: 57 IRPLWRHYYTGTQGLI 72
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I TIG F + TVE K I +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNICFTVWDVGGQD 84
Query: 69 RFRTITSSYYRGAHGII 85
+ R + Y++ G+I
Sbjct: 85 KIRPLWRHYFQNTQGLI 101
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G G GK+ +L + I + I TIG F + V+ I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVECVQY--CNISFTVWDVGGQD 72
Query: 69 RFRTITSSYYRGAHGII 85
R R++ YY G+I
Sbjct: 73 RIRSLWRHYYCNTEGVI 89
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + ++E Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound
State
Length = 196
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
KL + G +GVGKS L++RF +I Y T+ ++ + D + + ++I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQE 87
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I T+G F + TV K +K +WD G +
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGLD 68
Query: 69 RFRTITSSYYRGAHGII 85
+ R + YY G G+I
Sbjct: 69 KIRPLWRHYYTGTQGLI 85
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
Length = 172
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I T+G F + TV K +K +WD G +
Sbjct: 3 MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGLD 57
Query: 69 RFRTITSSYYRGAHGII 85
+ R + YY G G+I
Sbjct: 58 KIRPLWRHYYTGTQGLI 74
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I T+G F + TV K +K +WD G +
Sbjct: 4 MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGLD 58
Query: 69 RFRTITSSYYRGAHGII 85
+ R + YY G G+I
Sbjct: 59 KIRPLWRHYYTGTQGLI 75
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G G GK+ +L R + + I TIG F + TV K +K Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGQT 57
Query: 69 RFRTITSSYYRGAHGII 85
R YY +I
Sbjct: 58 SIRPYWRCYYSNTDAVI 74
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
++L++G GK+ +L + + + I TIG F + TVE + I +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEVVTT-IPTIG--FNVETVE--FRNISFTVWDVGGQDK 73
Query: 70 FRTITSSYYRGAHGII 85
R + YY G+I
Sbjct: 74 IRPLWRHYYSNTDGLI 89
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYRKQVV-IDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQE 68
K+ ++G VGKS L ++F + +++S TI F K+ TV +G+ LQ+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITV--NGQEYHLQLVDTAGQD 63
Query: 69 RFRTITSSYYRGAHGIIV 86
+ +Y +G I+
Sbjct: 64 EYSIFPQTYSIDINGYIL 81
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In
Complex With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G GK+ +L + + + I TIG F + TVE K I +WD G +
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGLD 57
Query: 69 RFRTITSSYYRGAHGII 85
+ R + Y++ G+I
Sbjct: 58 KIRPLWRHYFQNTQGLI 74
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
D ++LL+G GK+ LL + A + I T G F I++V+ G KL +WD
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASED-ISHITPTQG--FNIKSVQSQG--FKLNVWDIG 68
Query: 66 GQERFRTITSSYYRGAHGII 85
GQ + R SY+ +I
Sbjct: 69 GQRKIRPYWRSYFENTDILI 88
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGIIV 86
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFLC 80
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In
Complex With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In
Complex With Unc119a
Length = 189
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
D ++LL+G GK+ LL + A + I T G F I++V+ G KL +WD
Sbjct: 15 DQEVRILLLGLDNAGKTTLLKQLASED-ISHITPTQG--FNIKSVQSQG--FKLNVWDIG 69
Query: 66 GQERFRTITSSYYRGAHGII 85
GQ + R SY+ +I
Sbjct: 70 GQRKIRPYWRSYFENTDILI 89
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDEYMRTGEGFL 79
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 9 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 67
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 68 EYSAMRDQYMRTGEGFL 84
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 67
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 68 EYSAMRDQYMRTGEGFL 84
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus
Des C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate
Conformation Of H-Ras P21 At 1.35 Angstroms Resolution:
Implications For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In
Calcium A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution:
One Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs
Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs
Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs
Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With
Gdp
Length = 190
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 80
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 81 EYSAMRDQYMRTGEGFL 97
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With Gdp (2)
Length = 166
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|1RVD|A Chain A, H-Ras Complexed With
Diaminobenzophenone-Beta,Gamma-Imido- Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 5 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 64 EYSAMRDQYMRTGEGFL 80
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 5 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 64 EYSAMRDQYMRTGEGFL 80
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant
In Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By
The Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An
Oncogenic Mutant Complexed With Gsp
Length = 171
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An
Oncogenic Mutant Complexed With Gsp
Length = 171
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With
Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With
Hras
Length = 173
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 11 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 69
Query: 69 RFRTITSSYYRGAHGIIV 86
+ + Y R G +
Sbjct: 70 EYSAMRDQYMRTGEGFLC 87
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed
With The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed
With The Ras-interacting Domain Of Ralgds
Length = 167
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDF-KIRTVEQDGKTIKLQIWDTAGQE 68
K++++G VGK+ L +F + + E Y T+ + KI T+ +D L + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKD--EFHLHLVDTAGQD 83
Query: 69 RFRTITSSYYRGAHGIIV 86
+ + S+ G HG ++
Sbjct: 84 EYSILPYSFIIGVHGYVL 101
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 18 GVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSY 77
GK+ +L +F + +++ T+G F I+T+E G KL IWD GQ+ R+ +Y
Sbjct: 28 NAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNY 82
Query: 78 YRGAHGII 85
+ G+I
Sbjct: 83 FESTDGLI 90
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
++LL+G GK+ LL + A + I T G F I++V+ G KL +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASED-ISHITPTQG--FNIKSVQSQG--FKLNVWDIGGQRK 60
Query: 70 FRTITSSYYRGAHGII 85
R SY+ +I
Sbjct: 61 IRPYWRSYFENTDILI 76
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant
Of Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant
Of Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant
Of Ras
Length = 166
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGK+ L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y +I ++ + V DG+T L I DTAGQE
Sbjct: 10 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQE 68
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 69 EYSAMRDQYMRTGEGFL 85
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y +I ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ + TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH
GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH
GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH
GP
Length = 183
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++GD GVGKS L ++F +++ Y TI ++ T E D + L + DTAGQE
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHT-EIDNQWAILDVLDTAGQE 77
Query: 69 RFRTITSSYYRGAHGIIV 86
F + Y R G ++
Sbjct: 78 EFSAMREQYMRTGDGFLI 95
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++GD GVGKS L ++F +++ Y TI D ++ E D + L + DTAGQE
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQE 77
Query: 69 RFRTITSSYYRGAHGIIV 86
F + Y R G ++
Sbjct: 78 EFSAMREQYMRTGDGFLI 95
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAG+E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGKE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DT GQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTTGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++GD GVGKS L ++F ++ Y TI D ++ E D + L + DTAGQE
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQE 77
Query: 69 RFRTITSSYYRGAHGIIV 86
F + Y R G ++
Sbjct: 78 EFSAMREQYMRTGDGFLI 95
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ Y R G +
Sbjct: 63 EASAMRDQYMRTGEGFL 79
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAG E
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHE 80
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 81 EYSAMRDQYMRTGEGFL 97
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G G GK+ +L R + + I TIG F + TV K +K Q+WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGLT 59
Query: 69 RFRTITSSYYRGAHGII 85
R YY +I
Sbjct: 60 SIRPYWRCYYSNTDAVI 76
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DT GQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTGGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFAD--DSYIESYISTIGVDFKIRTVEQDGKTIKLQI--WDTA 65
K+ ++G++ VGKS L+ F +++ Y T GV+ + V T+ +++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 66 GQERFRTITSSYYRGA-HGIIVGD 88
G + ++ S Y+ G + I+V D
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFD 105
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++GD GVGKS L ++F ++ Y TI D ++ E D + L + DTAGQE
Sbjct: 14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQE 72
Query: 69 RFRTITSSYYRGAHGIIV 86
F + Y R G ++
Sbjct: 73 EFSAMREQYMRTGDGFLI 90
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGEICLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 10 KLLLIGDSGVGKSCLL--LRFADDSYIESYISTIGVDFK---IRTVEQDGKTIKLQIWDT 64
KL ++G++G GK+ LL L S + +T+G+D K I+ ++ + + L +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 65 AGQERF 70
AG+E F
Sbjct: 64 AGREEF 69
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
++L++G G GK+ +L R + + I TIG F + TV K +K Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGLTS 63
Query: 70 FRTITSSYYRGAHGII 85
R YY +I
Sbjct: 64 IRPYWRCYYSNTDAVI 79
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 10 KLLLIGDSGVGKSCLL--LRFADDSYIESYISTIGVDFK---IRTVEQDGKTIKLQIWDT 64
KL ++G++G GK+ LL L S + +T+G+D K I+ ++ + + L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 65 AGQERF 70
AG+E F
Sbjct: 62 AGREEF 67
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAG E
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLE 67
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 68 EYSAMRDQYMRTGEGFL 84
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
++L++G G GK+ +L R + + TIG F + T+ K +KL +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIG--FNVETLSY--KNLKLNVWDLGGQT 73
Query: 69 RFRTITSSYYRGAHGII 85
R YY +I
Sbjct: 74 SIRPYWRCYYADTAAVI 90
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound
Form
Length = 166
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGGE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With Gdp
Length = 166
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETXLLDILDTAGGE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIE 62
Query: 69 RFRTITSSYYRGAHGII 85
+ + Y R G +
Sbjct: 63 EYSAMRDQYMRTGEGFL 79
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
++LL+G GK+ LL + A + I T G F I++V+ G KL +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASED-ISHITPTQG--FNIKSVQSQG--FKLNVWDIGGLRK 60
Query: 70 FRTITSSYYRGAHGII 85
R SY+ +I
Sbjct: 61 IRPYWRSYFENTDILI 76
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 21 KSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80
KS L ++F ++ Y TI + + V D + +L I DTAGQE F + Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 81 AHGIIV 86
G ++
Sbjct: 77 GEGFLL 82
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 7 YLFKLLLIGDSGVGKSCLLLR-FADDSYIESYI--------STIGVDFKIRTVEQDGKTI 57
+ F L+++G+SG+GKS L+ F D Y E I T+ ++ +E+ G +
Sbjct: 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 58 KLQIWDTAG-------QERFRTITS 75
+L + DT G ++ F+TI S
Sbjct: 96 RLTVVDTPGYGDAINCRDCFKTIIS 120
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
P K++++G GK+ +L +F+ + + + TIG + + + + +W
Sbjct: 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVI----NNTRFLMW 70
Query: 63 DTAGQERFRTITSSYYRGAHGIIV 86
D GQE R+ ++YY +IV
Sbjct: 71 DIGGQESLRSSWNTYYTNTEFVIV 94
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
PE +++++ G GVGKS L+LRF ++ ++YI TI ++ + + D LQI
Sbjct: 3 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQIT 61
Query: 63 DTAGQERFRTITSSYYRGAHGIIV 86
DT G +F + H I+
Sbjct: 62 DTTGSHQFPAMQRLSISKGHAFIL 85
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 7 YLFKLLLIGDSGVGKSCLLLR-FADDSYIESYIS--------TIGVDFKIRTVEQDGKTI 57
+ F L ++G+SG+GKS L+ F D Y E IS T+ ++ +E+ G +
Sbjct: 17 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKL 76
Query: 58 KLQIWDTAG-------QERFRTITS 75
+L + DT G ++ F+TI S
Sbjct: 77 RLTVVDTPGYGDAINCRDCFKTIIS 101
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 7 YLFKLLLIGDSGVGKSCLLLR-FADDSYIESYIS--------TIGVDFKIRTVEQDGKTI 57
+ F L+++G+SG+GKS L+ F D Y E I T+ ++ +E+ G +
Sbjct: 4 FEFTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERGVKL 63
Query: 58 KLQIWDTAG-------QERFRTITS 75
+L + DT G ++ F+TI S
Sbjct: 64 RLTVVDTPGYGDAINCRDCFKTIIS 88
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K++++G GK+ +L +F+ + + + TIG + + + + +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVI----NNTRFLMWDIGGQES 78
Query: 70 FRTITSSYYRGAHGIIV 86
R+ ++YY +IV
Sbjct: 79 LRSSWNTYYTNTEFVIV 95
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K++++G GK+ +L +F+ + + + TIG + + E + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVE----EIVINNTRFLMWDIGGQES 72
Query: 70 FRTITSSYYRGAHGIIV 86
R+ ++YY +IV
Sbjct: 73 LRSSWNTYYTNTEFVIV 89
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K++++G GK+ +L +F+ + + + TIG + + E + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVE----EIVINNTRFLMWDIGGQES 72
Query: 70 FRTITSSYYRGAHGIIV 86
R+ ++YY +IV
Sbjct: 73 LRSSWNTYYTNTEFVIV 89
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
K++++G GK+ +L +F + + + TIG + + V K +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHTS-PTIGSNVEEIVV----KNTHFLMWDIGGQES 72
Query: 70 FRTITSSYYRGAHGIIV 86
R+ ++YY II+
Sbjct: 73 LRSSWNTYYSNTEFIIL 89
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 9 FKLLLIGDSGVGKSCLLLRFA--DDSYIESYISTIGVDFKIRTVEQDGKT---IKLQIWD 63
++++LIG+ GVGKS L FA DS ++S +G D RT+ DG++ I L +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDS-MDSDCEVLGEDTYERTLMVDGESATIILLDMWE 96
Query: 64 TAGQERF 70
G+ +
Sbjct: 97 NKGENEW 103
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 9 FKLLLIGDSGVGKSCLLLRFA--DDSYIESYISTIGVDFKIRTVEQDGKT---IKLQIWD 63
++++LIG+ GVGKS L FA DS ++S +G D RT+ DG++ I L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDS-MDSDCEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 64 TAGQERF 70
G+ +
Sbjct: 66 NKGENEW 72
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFA--DDSYIESYISTIGVDFKIRTVEQDGKT---IKLQIWD 63
++++LIG+ GVGKS L FA DS ++S +G D RT+ DG++ I L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDS-MDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 64 TAGQ 67
G+
Sbjct: 66 NKGE 69
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFA--DDSYIESYISTIGVDFKIRTVEQDGKT---IKLQIWD 63
++++LIG+ GVGKS L FA DS ++S +G D RT+ DG++ I L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDS-MDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 64 TAGQ 67
G+
Sbjct: 66 NKGE 69
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 16/85 (18%)
Query: 7 YLFKLLLIGDSGVGKSCLLLR-FADDSYIESYIS--------TIGVDFKIRTVEQDGKTI 57
+ F L ++G+SG+GKS L+ F D Y E I T+ ++ +E+ G +
Sbjct: 36 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 58 KLQIWDTAG-------QERFRTITS 75
+L + DT G ++ F+TI S
Sbjct: 96 RLTVVDTPGYGDAINCRDCFKTIIS 120
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
L++++L+GD GVGK+ L FA + + +G D RT+ DG+ L + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 68 ERF 70
E+
Sbjct: 63 EKL 65
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound
Gdp
Length = 195
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
+ D +FK++L+G+SGVGKS L F ++ D R + D + + L ++D
Sbjct: 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYD 78
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain
Bound To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain
Bound To Gdp
Length = 180
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 6 DYLFKLLLIGDSGVGKSCL 24
D +FK++L+G+SGVGKS L
Sbjct: 10 DGVFKVMLLGESGVGKSTL 28
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 29.3 bits (64), Expect = 0.65, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 7 YLFKLLLIGDSGVGKSCLLLR-FADDSYIESY-------ISTIGVDFKIRTVEQDGKTIK 58
+ F L+++G+SG+GKS L+ F D Y Y T+ V+ +++ G +
Sbjct: 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLL 89
Query: 59 LQIWDTAG 66
L I DT G
Sbjct: 90 LTIVDTPG 97
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 12 LLIGDSGVG-KSCLLLRFADDS---YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67
++IG S +G K+ + + ADD +IESY +GVD V+Q+G L +
Sbjct: 50 IVIGSSKLGLKAGFIGKIADDQHGRFIESYXRGVGVDTSNLVVDQEGHKTGLAFTEIKSP 109
Query: 68 ER 69
E
Sbjct: 110 EE 111
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like
6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like
6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like
6
Length = 190
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 11 LLLIGDSGVGKSCLLLRF-ADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69
+L +G GK+ ++ + ++ ++ + TIG F I + ++ ++D +GQ R
Sbjct: 24 VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFK--SSSLSFTVFDMSGQGR 79
Query: 70 FRTITSSYYRGAHGII 85
+R + YY+ II
Sbjct: 80 YRNLWEHYYKEGQAII 95
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 7 YLFKLLLIGDSGVGKSCLLLR-FADDSYIESYI-------STIGVDFKIRTVEQDGKTIK 58
+ F L+++G+SG+GKS L+ F D Y Y T+ V+ +++ G +
Sbjct: 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLL 66
Query: 59 LQIWDTAG 66
L I DT G
Sbjct: 67 LTIVDTPG 74
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFAD--DSYIESYISTIGVDFKIRTVEQDGKTIK 58
+N E F +L++G +GVGK+ + + A + +S + G F+ VEQ
Sbjct: 86 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQ------ 139
Query: 59 LQIW 62
LQ+W
Sbjct: 140 LQVW 143
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 7 YLFKLLLIGDSGVGKSCLLLR-FADDSYIESYI-------STIGVDFKIRTVEQDGKTIK 58
+ F L+++G+SG+GKS L+ F D Y Y T+ V+ +++ G +
Sbjct: 2 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLL 61
Query: 59 LQIWDTAG 66
L I DT G
Sbjct: 62 LTIVDTPG 69
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFAD--DSYIESYISTIGVDFKIRTVEQDGKTIK 58
+N E F +L++G +GVGK+ + + A + +S + G F+ VEQ
Sbjct: 92 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQ------ 145
Query: 59 LQIW 62
LQ+W
Sbjct: 146 LQVW 149
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFAD--DSYIESYISTIGVDFKIRTVEQDGKTIK 58
+N E F +L++G +GVGK+ + + A + +S + G F+ VEQ
Sbjct: 91 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQ------ 144
Query: 59 LQIW 62
LQ+W
Sbjct: 145 LQVW 148
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 16/17 (94%)
Query: 8 LFKLLLIGDSGVGKSCL 24
+FK++L+G+SGVGKS L
Sbjct: 2 VFKVMLVGESGVGKSTL 18
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human
Grlf1 (P190rhogap)
Length = 255
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 15 GDSGVGKSCLLLRFADDSYIESYISTIGV----DFKIRTVEQD 53
G G+GKSCL RF S E ++ V DF R V D
Sbjct: 35 GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNND 77
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDF------KIRTVEQDG--KTIKLQI 61
K+ LIGD GK+ LL + +++ T G++ I+ +E D K
Sbjct: 43 KVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHF 102
Query: 62 WDTAGQE 68
WD GQE
Sbjct: 103 WDFGGQE 109
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFAD--DSYIESYISTIGVDFKIRTVEQDGKTIK 58
+N E F +L++G +GVGK+ + + A + +S + G F+ VEQ
Sbjct: 286 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQ------ 339
Query: 59 LQIW 62
LQ+W
Sbjct: 340 LQVW 343
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 9 FKLLLIGDSGVGKSCL--------LLRFADDSYIESYIS-TIGVDFKIRTVEQDGKTIKL 59
F ++++G SG+GKS L + R A E I T+ + +E+ G +KL
Sbjct: 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKL 62
Query: 60 QIWDTAG 66
+ DT G
Sbjct: 63 TVIDTPG 69
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 10 KLLLIGDSGVGKSCLL-LRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68
KLLL+G SG GKS + + F++ S ++ +D + + G + L +WD GQ+
Sbjct: 8 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQD 66
Query: 69 RF 70
F
Sbjct: 67 VF 68
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 6 DYLFKLLLIGDSGVGKSCLLLRFA---DDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
+ ++K+LL+G GVGKS L F D E+ T R++ DG+ L ++
Sbjct: 5 ESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-----RSIVVDGEEASLMVY 59
Query: 63 DTAGQERFRTITSSYYRGAHGIIVGD 88
D Q+ R + H + +GD
Sbjct: 60 DIWEQDGGRWLP------GHCMAMGD 79
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog
Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog
Complex
Length = 166
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFA---DDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
++K+LL+G GVGKS L F D E+ T R++ DG+ L ++D
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-----RSIVVDGEEASLMVYDI 56
Query: 65 AGQERFRTITSSYYRGAHGIIVGD 88
Q+ R + H + +GD
Sbjct: 57 WEQDGGRWLP------GHCMAMGD 74
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 6 DYLFKLLLIGDSGVGKSCLLLRFA---DDSYIESYISTIGVDFKIRTVEQDGKTIKLQIW 62
+ ++K+LL+G GVGKS L F D E+ T R++ DG+ L ++
Sbjct: 5 ESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-----RSIVVDGEEASLMVY 59
Query: 63 DTAGQERFRTITSSYYRGAHGIIVGD 88
D Q+ R + H + +GD
Sbjct: 60 DIWEQDGGRWLP------GHCMAMGD 79
>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
Length = 302
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 6 DYL--FKLLLIGDSGVGKSCLLLRFADDS 32
DYL F +L G SGVGKS +L R +
Sbjct: 161 DYLEGFICILAGPSGVGKSSILSRLTGEE 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.142 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,765,962
Number of Sequences: 62578
Number of extensions: 94098
Number of successful extensions: 915
Number of sequences better than 100.0: 360
Number of HSP's better than 100.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 361
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)