Query 033918
Match_columns 109
No_of_seqs 114 out of 1181
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 07:46:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033918.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033918hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 3E-30 6.4E-35 157.9 10.6 107 1-107 2-120 (205)
2 KOG0078 GTP-binding protein SE 99.9 2E-25 4.4E-30 138.1 10.8 104 4-107 8-123 (207)
3 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.9 2.7E-25 5.8E-30 136.2 11.1 91 6-96 20-114 (221)
4 cd04121 Rab40 Rab40 subfamily. 99.9 1.7E-24 3.6E-29 135.1 11.8 104 5-108 3-117 (189)
5 cd04120 Rab12 Rab12 subfamily. 99.9 1.5E-24 3.2E-29 136.5 11.6 100 9-108 1-112 (202)
6 KOG0080 GTPase Rab18, small G 99.9 5E-25 1.1E-29 131.5 8.2 93 4-96 7-103 (209)
7 KOG0087 GTPase Rab11/YPT3, sma 99.9 1.1E-24 2.3E-29 134.8 9.5 105 3-107 9-125 (222)
8 cd01875 RhoG RhoG subfamily. 99.9 5.1E-24 1.1E-28 133.0 11.1 100 8-108 3-114 (191)
9 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 6.5E-24 1.4E-28 131.7 11.3 103 5-108 2-116 (182)
10 KOG0098 GTPase Rab2, small G p 99.9 5.2E-24 1.1E-28 129.7 10.1 92 5-96 3-98 (216)
11 KOG0394 Ras-related GTPase [Ge 99.9 2.4E-24 5.2E-29 130.9 8.1 93 4-96 5-101 (210)
12 cd04133 Rop_like Rop subfamily 99.9 1.5E-23 3.1E-28 129.6 11.4 99 9-108 2-112 (176)
13 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 1.5E-23 3.4E-28 131.6 11.1 100 9-108 1-117 (201)
14 cd01874 Cdc42 Cdc42 subfamily. 99.9 2.2E-23 4.8E-28 128.6 11.5 100 8-108 1-112 (175)
15 cd04122 Rab14 Rab14 subfamily. 99.9 2.4E-23 5.2E-28 127.0 11.4 101 8-108 2-114 (166)
16 cd04131 Rnd Rnd subfamily. Th 99.9 2.3E-23 5E-28 128.9 11.3 100 8-108 1-112 (178)
17 KOG0092 GTPase Rab5/YPT51 and 99.9 1.1E-23 2.5E-28 128.6 9.3 91 6-96 3-97 (200)
18 PLN03071 GTP-binding nuclear p 99.9 4.3E-23 9.4E-28 131.3 12.1 104 5-108 10-124 (219)
19 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 2.7E-23 5.9E-28 132.4 10.7 99 9-108 2-112 (222)
20 cd01867 Rab8_Rab10_Rab13_like 99.9 6.6E-23 1.4E-27 125.3 11.5 103 6-108 1-115 (167)
21 cd04128 Spg1 Spg1p. Spg1p (se 99.9 6.1E-23 1.3E-27 127.4 11.3 88 9-96 1-92 (182)
22 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 7.5E-23 1.6E-27 125.9 11.5 100 8-108 2-114 (172)
23 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 6.4E-23 1.4E-27 131.4 11.1 101 7-108 12-124 (232)
24 cd04136 Rap_like Rap-like subf 99.9 1E-22 2.2E-27 123.5 11.1 100 8-108 1-113 (163)
25 cd04102 RabL3 RabL3 (Rab-like3 99.9 6.1E-23 1.3E-27 129.1 10.3 88 9-96 1-97 (202)
26 KOG0086 GTPase Rab4, small G p 99.9 2.1E-23 4.7E-28 123.8 7.7 96 1-96 2-101 (214)
27 cd04124 RabL2 RabL2 subfamily. 99.9 1.5E-22 3.2E-27 123.2 11.5 100 9-108 1-111 (161)
28 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.5E-22 3.2E-27 124.3 11.6 86 10-95 2-91 (170)
29 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 2E-22 4.3E-27 122.9 11.7 101 8-108 2-114 (166)
30 cd04116 Rab9 Rab9 subfamily. 99.9 2.4E-22 5.2E-27 122.9 12.1 104 5-108 2-121 (170)
31 cd04119 RJL RJL (RabJ-Like) su 99.9 1.8E-22 3.9E-27 122.7 11.3 100 9-108 1-117 (168)
32 cd01864 Rab19 Rab19 subfamily. 99.9 2.1E-22 4.5E-27 122.7 11.5 102 7-108 2-115 (165)
33 cd04176 Rap2 Rap2 subgroup. T 99.9 2.1E-22 4.6E-27 122.4 11.4 100 8-108 1-113 (163)
34 cd04117 Rab15 Rab15 subfamily. 99.9 1.9E-22 4.2E-27 122.7 11.2 100 9-108 1-112 (161)
35 cd01871 Rac1_like Rac1-like su 99.9 1.9E-22 4.2E-27 124.3 11.3 99 9-108 2-112 (174)
36 cd04110 Rab35 Rab35 subfamily. 99.9 2.3E-22 4.9E-27 126.3 11.7 104 5-108 3-117 (199)
37 cd01865 Rab3 Rab3 subfamily. 99.9 2.5E-22 5.4E-27 122.5 11.5 100 9-108 2-113 (165)
38 cd01892 Miro2 Miro2 subfamily. 99.9 3.3E-22 7.3E-27 122.6 11.8 103 6-108 2-115 (169)
39 PTZ00369 Ras-like protein; Pro 99.9 2.5E-22 5.5E-27 125.1 11.5 101 7-108 4-117 (189)
40 cd04106 Rab23_lke Rab23-like s 99.9 2.1E-22 4.6E-27 122.1 10.8 100 9-108 1-113 (162)
41 cd01866 Rab2 Rab2 subfamily. 99.9 3.4E-22 7.4E-27 122.3 11.8 103 6-108 2-116 (168)
42 KOG0079 GTP-binding protein H- 99.9 2.8E-23 6.1E-28 122.6 6.5 104 4-107 4-118 (198)
43 cd04127 Rab27A Rab27a subfamil 99.9 3.3E-22 7.2E-27 123.3 11.5 103 6-108 2-127 (180)
44 cd04175 Rap1 Rap1 subgroup. T 99.9 3.1E-22 6.8E-27 121.8 11.1 100 8-108 1-113 (164)
45 cd04138 H_N_K_Ras_like H-Ras/N 99.9 4.1E-22 8.9E-27 120.5 11.3 100 8-108 1-113 (162)
46 cd00877 Ran Ran (Ras-related n 99.9 5.1E-22 1.1E-26 121.5 11.7 100 9-108 1-111 (166)
47 PF00071 Ras: Ras family; Int 99.9 2.7E-22 5.8E-27 121.7 10.1 98 10-107 1-110 (162)
48 PLN03110 Rab GTPase; Provision 99.9 7.1E-22 1.5E-26 125.5 12.2 105 4-108 8-124 (216)
49 cd04113 Rab4 Rab4 subfamily. 99.9 5.8E-22 1.3E-26 120.2 11.2 100 9-108 1-112 (161)
50 cd01868 Rab11_like Rab11-like. 99.9 7.2E-22 1.6E-26 120.2 11.4 102 7-108 2-115 (165)
51 cd04115 Rab33B_Rab33A Rab33B/R 99.9 1E-21 2.3E-26 120.3 11.9 101 8-108 2-116 (170)
52 cd01861 Rab6 Rab6 subfamily. 99.9 8.9E-22 1.9E-26 119.2 11.1 100 9-108 1-112 (161)
53 cd04125 RabA_like RabA-like su 99.9 1E-21 2.2E-26 122.1 11.5 100 9-108 1-112 (188)
54 cd04134 Rho3 Rho3 subfamily. 99.9 7.9E-22 1.7E-26 122.9 10.9 99 9-108 1-111 (189)
55 cd04111 Rab39 Rab39 subfamily. 99.9 8.8E-22 1.9E-26 124.7 11.2 89 8-96 2-95 (211)
56 cd04109 Rab28 Rab28 subfamily. 99.9 8.4E-22 1.8E-26 125.0 11.2 88 9-96 1-93 (215)
57 cd04132 Rho4_like Rho4-like su 99.9 8.9E-22 1.9E-26 122.1 10.8 99 9-108 1-112 (187)
58 cd04118 Rab24 Rab24 subfamily. 99.9 1.5E-21 3.3E-26 121.7 11.9 100 9-108 1-112 (193)
59 KOG0095 GTPase Rab30, small G 99.9 6.2E-22 1.3E-26 117.3 8.7 92 3-94 2-97 (213)
60 KOG0093 GTPase Rab3, small G p 99.9 1.1E-21 2.4E-26 115.7 9.1 102 6-107 19-132 (193)
61 PLN03108 Rab family protein; P 99.9 3.1E-21 6.7E-26 122.1 11.8 104 5-108 3-118 (210)
62 PLN00023 GTP-binding protein; 99.9 1.7E-21 3.8E-26 129.0 11.0 92 5-96 18-126 (334)
63 cd04112 Rab26 Rab26 subfamily. 99.9 2.5E-21 5.5E-26 120.8 11.0 100 9-108 1-113 (191)
64 cd04143 Rhes_like Rhes_like su 99.9 1.8E-21 3.8E-26 125.9 10.6 99 9-108 1-120 (247)
65 smart00175 RAB Rab subfamily o 99.9 4.5E-21 9.7E-26 116.3 11.3 100 9-108 1-112 (164)
66 cd04144 Ras2 Ras2 subfamily. 99.9 2.4E-21 5.3E-26 120.7 10.1 98 10-108 1-113 (190)
67 smart00173 RAS Ras subfamily o 99.9 4E-21 8.7E-26 116.7 10.8 99 9-108 1-112 (164)
68 cd01862 Rab7 Rab7 subfamily. 99.9 2.2E-21 4.8E-26 118.5 9.6 100 9-108 1-116 (172)
69 cd01860 Rab5_related Rab5-rela 99.9 6.2E-21 1.3E-25 115.7 11.3 101 8-108 1-113 (163)
70 cd04145 M_R_Ras_like M-Ras/R-R 99.9 7.5E-21 1.6E-25 115.4 11.5 100 8-108 2-114 (164)
71 smart00176 RAN Ran (Ras-relate 99.9 3.5E-21 7.7E-26 121.1 10.2 95 14-108 1-106 (200)
72 cd04130 Wrch_1 Wrch-1 subfamil 99.9 6.4E-21 1.4E-25 117.1 11.1 99 9-108 1-111 (173)
73 smart00174 RHO Rho (Ras homolo 99.9 5.3E-21 1.2E-25 117.3 10.6 97 11-108 1-109 (174)
74 KOG0091 GTPase Rab39, small G 99.9 3.8E-22 8.3E-27 119.5 5.2 94 3-96 3-101 (213)
75 PLN03118 Rab family protein; P 99.9 1.2E-20 2.7E-25 119.3 12.3 104 4-108 10-127 (211)
76 cd04177 RSR1 RSR1 subgroup. R 99.9 1E-20 2.2E-25 115.7 11.3 100 8-108 1-113 (168)
77 cd04140 ARHI_like ARHI subfami 99.9 1.1E-20 2.4E-25 115.2 11.4 99 9-108 2-115 (165)
78 cd04101 RabL4 RabL4 (Rab-like4 99.9 9.4E-21 2E-25 115.1 10.8 100 9-108 1-114 (164)
79 PTZ00132 GTP-binding nuclear p 99.9 2.7E-20 5.8E-25 118.0 12.1 106 3-108 4-120 (215)
80 cd01863 Rab18 Rab18 subfamily. 99.9 2.6E-20 5.6E-25 112.9 11.5 100 9-108 1-113 (161)
81 cd01870 RhoA_like RhoA-like su 99.9 1.6E-20 3.4E-25 115.3 10.6 99 9-108 2-112 (175)
82 cd04135 Tc10 TC10 subfamily. 99.8 2.3E-20 5.1E-25 114.4 11.2 99 9-108 1-111 (174)
83 cd04142 RRP22 RRP22 subfamily. 99.8 1.7E-20 3.6E-25 117.8 10.4 100 9-108 1-123 (198)
84 cd04126 Rab20 Rab20 subfamily. 99.8 2.2E-20 4.7E-25 119.0 10.9 95 9-108 1-107 (220)
85 cd04103 Centaurin_gamma Centau 99.8 5.8E-20 1.3E-24 111.7 11.4 93 9-108 1-106 (158)
86 KOG0393 Ras-related small GTPa 99.8 2.5E-21 5.4E-26 120.1 5.4 102 6-108 2-116 (198)
87 cd04123 Rab21 Rab21 subfamily. 99.8 6.8E-20 1.5E-24 110.7 11.2 100 9-108 1-112 (162)
88 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 2.5E-20 5.4E-25 113.8 8.8 94 11-108 2-106 (164)
89 cd04114 Rab30 Rab30 subfamily. 99.8 1.9E-19 4.2E-24 109.8 12.3 104 5-108 4-119 (169)
90 cd04150 Arf1_5_like Arf1-Arf5- 99.8 3.4E-20 7.4E-25 112.7 8.7 95 9-108 1-108 (159)
91 smart00177 ARF ARF-like small 99.8 4.2E-20 9.1E-25 113.9 9.2 97 7-108 12-121 (175)
92 cd00154 Rab Rab family. Rab G 99.8 1.7E-19 3.6E-24 108.2 11.0 100 9-108 1-112 (159)
93 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 7.6E-20 1.6E-24 113.5 9.8 100 8-108 3-116 (183)
94 PTZ00133 ADP-ribosylation fact 99.8 5.1E-20 1.1E-24 114.2 9.0 97 7-108 16-125 (182)
95 cd04146 RERG_RasL11_like RERG/ 99.8 6.1E-20 1.3E-24 111.8 9.1 98 10-108 1-113 (165)
96 KOG0395 Ras-related GTPase [Ge 99.8 3.1E-20 6.8E-25 116.3 8.0 101 7-108 2-115 (196)
97 cd04149 Arf6 Arf6 subfamily. 99.8 5.6E-20 1.2E-24 112.7 8.9 97 7-108 8-117 (168)
98 PLN00223 ADP-ribosylation fact 99.8 7.4E-20 1.6E-24 113.5 9.2 98 6-108 15-125 (181)
99 cd04147 Ras_dva Ras-dva subfam 99.8 1.1E-19 2.4E-24 113.9 10.1 98 10-108 1-111 (198)
100 cd00157 Rho Rho (Ras homology) 99.8 2.6E-19 5.7E-24 109.2 11.5 99 9-108 1-111 (171)
101 cd04148 RGK RGK subfamily. Th 99.8 2.6E-19 5.6E-24 114.1 11.0 98 9-108 1-113 (221)
102 cd04139 RalA_RalB RalA/RalB su 99.8 3.8E-19 8.2E-24 107.7 10.8 99 9-108 1-112 (164)
103 cd01893 Miro1 Miro1 subfamily. 99.8 3E-19 6.5E-24 109.0 10.0 98 9-108 1-110 (166)
104 cd01873 RhoBTB RhoBTB subfamil 99.8 5.6E-19 1.2E-23 110.7 10.2 99 8-108 2-127 (195)
105 cd04161 Arl2l1_Arl13_like Arl2 99.8 3.8E-19 8.1E-24 108.9 9.2 94 10-108 1-107 (167)
106 PF08477 Miro: Miro-like prote 99.8 3.4E-19 7.3E-24 103.3 8.5 99 10-108 1-115 (119)
107 cd04137 RheB Rheb (Ras Homolog 99.8 1.1E-18 2.4E-23 107.6 10.5 99 9-108 2-113 (180)
108 KOG0088 GTPase Rab21, small G 99.8 4.6E-20 1E-24 110.2 3.8 93 4-96 9-105 (218)
109 cd04158 ARD1 ARD1 subfamily. 99.8 5.2E-19 1.1E-23 108.4 8.5 94 10-108 1-107 (169)
110 PF00025 Arf: ADP-ribosylation 99.8 1.1E-18 2.3E-23 107.8 9.8 99 5-108 11-122 (175)
111 KOG0073 GTP-binding ADP-ribosy 99.8 5.8E-19 1.3E-23 105.7 7.9 100 4-108 12-124 (185)
112 cd04157 Arl6 Arl6 subfamily. 99.8 5.1E-19 1.1E-23 107.1 7.9 95 10-108 1-111 (162)
113 cd00876 Ras Ras family. The R 99.8 1.7E-18 3.7E-23 104.4 10.1 98 10-108 1-111 (160)
114 COG1100 GTPase SAR1 and relate 99.8 2.2E-18 4.8E-23 109.2 10.7 101 8-108 5-118 (219)
115 cd04154 Arl2 Arl2 subfamily. 99.8 1.8E-18 3.9E-23 106.2 9.5 99 5-108 11-122 (173)
116 KOG0097 GTPase Rab14, small G 99.8 1.5E-18 3.3E-23 102.2 8.2 93 4-96 7-103 (215)
117 KOG0070 GTP-binding ADP-ribosy 99.8 4.4E-19 9.5E-24 108.0 5.8 99 5-108 14-125 (181)
118 cd04129 Rho2 Rho2 subfamily. 99.8 7.1E-18 1.5E-22 104.9 11.3 99 9-108 2-112 (187)
119 KOG4252 GTP-binding protein [S 99.8 1.4E-20 3.1E-25 114.4 -1.7 105 3-107 15-130 (246)
120 KOG0083 GTPase Rab26/Rab37, sm 99.8 5.9E-20 1.3E-24 107.1 0.9 84 13-96 2-90 (192)
121 cd04156 ARLTS1 ARLTS1 subfamil 99.8 4.6E-18 9.9E-23 102.9 9.0 95 10-108 1-108 (160)
122 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 5E-18 1.1E-22 104.5 9.3 97 7-108 14-123 (174)
123 KOG0081 GTPase Rab27, small G 99.8 4.3E-20 9.4E-25 110.4 -0.4 105 3-107 4-129 (219)
124 smart00178 SAR Sar1p-like memb 99.8 9.3E-18 2E-22 104.2 9.1 98 6-108 15-125 (184)
125 cd04151 Arl1 Arl1 subfamily. 99.8 5E-18 1.1E-22 102.8 7.4 94 10-108 1-107 (158)
126 cd04159 Arl10_like Arl10-like 99.7 2.2E-17 4.8E-22 99.0 9.1 95 10-108 1-108 (159)
127 KOG0071 GTP-binding ADP-ribosy 99.7 1.1E-17 2.5E-22 98.1 7.5 84 6-94 15-102 (180)
128 cd00879 Sar1 Sar1 subfamily. 99.7 3.4E-17 7.3E-22 101.8 9.9 98 6-108 17-127 (190)
129 cd00878 Arf_Arl Arf (ADP-ribos 99.7 3.1E-17 6.6E-22 99.1 8.9 94 10-108 1-107 (158)
130 cd04160 Arfrp1 Arfrp1 subfamil 99.7 4.4E-17 9.5E-22 99.2 8.8 95 10-108 1-114 (167)
131 KOG0074 GTP-binding ADP-ribosy 99.7 4E-17 8.7E-22 96.0 8.0 100 4-107 13-125 (185)
132 TIGR00231 small_GTP small GTP- 99.7 3.4E-16 7.4E-21 93.4 11.4 79 8-86 1-79 (161)
133 KOG1673 Ras GTPases [General f 99.7 5.7E-17 1.2E-21 96.8 5.2 102 5-106 17-130 (205)
134 cd01890 LepA LepA subfamily. 99.7 4E-16 8.6E-21 96.0 8.4 99 10-108 2-126 (179)
135 cd04105 SR_beta Signal recogni 99.7 1.1E-15 2.3E-20 96.4 9.4 98 10-108 2-116 (203)
136 cd04155 Arl3 Arl3 subfamily. 99.7 1.8E-15 4E-20 92.6 9.7 98 6-108 12-122 (173)
137 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 1E-15 2.2E-20 93.1 7.8 99 10-108 2-109 (168)
138 cd01891 TypA_BipA TypA (tyrosi 99.6 4.6E-16 1E-20 97.3 6.4 100 9-108 3-124 (194)
139 cd04171 SelB SelB subfamily. 99.6 1.2E-15 2.7E-20 92.3 7.9 76 10-86 2-80 (164)
140 KOG0075 GTP-binding ADP-ribosy 99.6 3.1E-16 6.7E-21 92.8 3.4 83 8-94 20-106 (186)
141 PRK04213 GTP-binding protein; 99.6 3.8E-15 8.3E-20 93.4 8.4 82 5-92 6-103 (201)
142 KOG3883 Ras family small GTPas 99.6 6.2E-15 1.3E-19 87.9 8.6 102 6-108 7-125 (198)
143 KOG0096 GTPase Ran/TC4/GSP1 (n 99.6 9E-15 1.9E-19 89.8 7.3 100 7-106 9-119 (216)
144 TIGR02528 EutP ethanolamine ut 99.6 6.2E-15 1.3E-19 87.7 6.0 84 10-108 2-95 (142)
145 PRK15494 era GTPase Era; Provi 99.6 2E-14 4.4E-19 96.8 8.7 100 6-108 50-167 (339)
146 cd00882 Ras_like_GTPase Ras-li 99.6 5.7E-14 1.2E-18 82.9 8.9 95 13-108 1-109 (157)
147 TIGR00487 IF-2 translation ini 99.5 5.5E-14 1.2E-18 100.2 9.8 101 7-108 86-194 (587)
148 TIGR03598 GTPase_YsxC ribosome 99.5 9.1E-14 2E-18 85.9 9.0 102 4-108 14-136 (179)
149 cd01878 HflX HflX subfamily. 99.5 9.5E-14 2.1E-18 87.3 9.2 101 6-108 39-160 (204)
150 PRK03003 GTP-binding protein D 99.5 1.1E-13 2.5E-18 96.7 9.6 99 8-108 38-153 (472)
151 TIGR00450 mnmE_trmE_thdF tRNA 99.5 3.1E-13 6.7E-18 93.8 11.3 99 7-108 202-317 (442)
152 cd01879 FeoB Ferrous iron tran 99.5 1.6E-13 3.4E-18 82.6 8.3 94 13-108 1-108 (158)
153 TIGR03156 GTP_HflX GTP-binding 99.5 2E-13 4.4E-18 92.3 9.2 100 7-108 188-308 (351)
154 cd01898 Obg Obg subfamily. Th 99.5 2.3E-13 5.1E-18 82.9 8.7 98 10-108 2-121 (170)
155 cd00881 GTP_translation_factor 99.5 1.1E-13 2.4E-18 85.4 7.1 97 10-108 1-121 (189)
156 CHL00189 infB translation init 99.5 2.4E-13 5.3E-18 98.7 9.2 102 7-108 243-354 (742)
157 cd01850 CDC_Septin CDC/Septin. 99.5 7.4E-13 1.6E-17 87.0 10.7 62 6-67 2-73 (276)
158 cd01897 NOG NOG1 is a nucleola 99.5 6.3E-13 1.4E-17 80.9 9.6 57 10-68 2-58 (168)
159 PF02421 FeoB_N: Ferrous iron 99.5 4E-13 8.6E-18 81.4 8.3 98 9-108 1-112 (156)
160 cd04164 trmE TrmE (MnmE, ThdF, 99.5 5.8E-13 1.3E-17 79.8 8.8 98 9-108 2-114 (157)
161 TIGR01393 lepA GTP-binding pro 99.5 4.7E-13 1E-17 95.8 9.5 101 8-108 3-129 (595)
162 PRK05306 infB translation init 99.5 6.3E-13 1.4E-17 97.2 10.2 101 6-108 288-396 (787)
163 PRK00093 GTP-binding protein D 99.5 4.5E-13 9.8E-18 92.8 9.0 98 9-108 2-116 (435)
164 PRK05291 trmE tRNA modificatio 99.5 8.6E-13 1.9E-17 91.8 9.8 99 8-108 215-328 (449)
165 PTZ00099 rab6; Provisional 99.5 6.6E-13 1.4E-17 82.1 8.3 78 31-108 3-92 (176)
166 PRK00454 engB GTP-binding prot 99.4 8E-13 1.7E-17 82.4 8.5 80 4-86 20-112 (196)
167 PRK03003 GTP-binding protein D 99.4 8.4E-13 1.8E-17 92.4 9.3 100 7-108 210-329 (472)
168 TIGR00436 era GTP-binding prot 99.4 5.5E-13 1.2E-17 87.4 7.8 96 10-108 2-114 (270)
169 KOG0077 Vesicle coat complex C 99.4 7.9E-14 1.7E-18 84.1 3.3 97 7-108 19-128 (193)
170 KOG0076 GTP-binding ADP-ribosy 99.4 7.4E-14 1.6E-18 84.7 3.0 97 8-108 17-133 (197)
171 TIGR00491 aIF-2 translation in 99.4 5.7E-13 1.2E-17 95.1 7.6 100 9-108 5-128 (590)
172 cd04167 Snu114p Snu114p subfam 99.4 1E-12 2.2E-17 83.3 8.0 99 10-108 2-130 (213)
173 cd01894 EngA1 EngA1 subfamily. 99.4 5.6E-13 1.2E-17 80.0 6.3 94 12-108 1-112 (157)
174 TIGR00475 selB selenocysteine- 99.4 1.5E-12 3.3E-17 93.0 8.8 98 9-108 1-110 (581)
175 cd01889 SelB_euk SelB subfamil 99.4 1.2E-12 2.5E-17 81.8 6.9 78 9-86 1-97 (192)
176 PRK10218 GTP-binding protein; 99.4 2.8E-12 6E-17 91.9 9.4 80 7-86 4-97 (607)
177 TIGR03594 GTPase_EngA ribosome 99.4 9.6E-13 2.1E-17 91.0 6.6 97 10-108 1-114 (429)
178 cd04104 p47_IIGP_like p47 (47- 99.4 3.1E-12 6.7E-17 80.3 8.0 101 8-108 1-114 (197)
179 cd01895 EngA2 EngA2 subfamily. 99.4 7.9E-12 1.7E-16 75.9 9.1 99 8-108 2-120 (174)
180 PRK09518 bifunctional cytidyla 99.4 3.9E-12 8.5E-17 92.8 8.9 100 7-108 274-390 (712)
181 PRK00089 era GTPase Era; Revie 99.4 8.2E-12 1.8E-16 82.6 9.6 99 7-108 4-120 (292)
182 COG1159 Era GTPase [General fu 99.4 3.3E-12 7.1E-17 83.5 7.3 102 6-108 4-121 (298)
183 PRK11058 GTPase HflX; Provisio 99.4 6.9E-12 1.5E-16 86.8 9.2 99 9-108 198-316 (426)
184 TIGR03594 GTPase_EngA ribosome 99.4 5.9E-12 1.3E-16 87.1 8.9 100 6-108 170-290 (429)
185 cd04168 TetM_like Tet(M)-like 99.4 2E-12 4.4E-17 83.3 6.1 97 10-108 1-123 (237)
186 KOG1707 Predicted Ras related/ 99.4 3.3E-12 7.1E-17 89.5 7.4 102 4-107 5-121 (625)
187 KOG0072 GTP-binding ADP-ribosy 99.3 2.1E-13 4.6E-18 80.6 0.9 77 5-86 15-91 (182)
188 PRK04004 translation initiatio 99.3 8.4E-12 1.8E-16 89.3 8.8 103 6-108 4-130 (586)
189 cd04163 Era Era subfamily. Er 99.3 1.3E-11 2.7E-16 74.4 8.3 78 8-86 3-88 (168)
190 cd04169 RF3 RF3 subfamily. Pe 99.3 8.6E-12 1.9E-16 81.7 7.9 78 9-86 3-100 (267)
191 PRK09554 feoB ferrous iron tra 99.3 2E-11 4.4E-16 89.5 10.3 99 8-108 3-119 (772)
192 COG0218 Predicted GTPase [Gene 99.3 8.8E-12 1.9E-16 77.6 6.9 100 4-108 20-142 (200)
193 PF01926 MMR_HSR1: 50S ribosom 99.3 2.1E-11 4.6E-16 70.4 7.9 96 10-108 1-114 (116)
194 KOG1423 Ras-like GTPase ERA [C 99.3 1.4E-11 3E-16 81.1 7.8 104 4-108 68-192 (379)
195 cd01881 Obg_like The Obg-like 99.3 1.1E-11 2.3E-16 75.8 6.8 72 13-86 1-80 (176)
196 PF09439 SRPRB: Signal recogni 99.3 2.9E-12 6.2E-17 79.3 3.9 83 8-94 3-90 (181)
197 TIGR00437 feoB ferrous iron tr 99.3 5E-11 1.1E-15 85.5 10.0 92 15-108 1-106 (591)
198 PRK05433 GTP-binding protein L 99.3 3E-11 6.6E-16 86.7 8.8 103 6-108 5-133 (600)
199 COG1160 Predicted GTPases [Gen 99.3 1.4E-11 3E-16 84.6 6.4 98 9-108 4-119 (444)
200 PRK09518 bifunctional cytidyla 99.3 4E-11 8.8E-16 87.6 9.1 99 7-108 449-568 (712)
201 PRK12299 obgE GTPase CgtA; Rev 99.3 7.7E-11 1.7E-15 79.4 9.8 98 9-108 159-278 (335)
202 cd04170 EF-G_bact Elongation f 99.3 1.5E-11 3.2E-16 80.6 6.2 99 10-108 1-123 (268)
203 cd00880 Era_like Era (E. coli 99.3 5E-11 1.1E-15 71.0 8.0 95 13-108 1-111 (163)
204 COG2229 Predicted GTPase [Gene 99.3 5.2E-11 1.1E-15 73.0 7.9 100 6-108 8-128 (187)
205 TIGR01394 TypA_BipA GTP-bindin 99.2 2.2E-11 4.8E-16 87.2 7.0 98 9-108 2-123 (594)
206 PRK15467 ethanolamine utilizat 99.2 1.6E-11 3.5E-16 74.6 5.4 86 10-108 3-98 (158)
207 PRK00093 GTP-binding protein D 99.2 8.7E-11 1.9E-15 81.5 9.3 100 7-108 172-291 (435)
208 PRK13351 elongation factor G; 99.2 3.7E-11 8.1E-16 87.5 7.5 105 4-108 4-132 (687)
209 KOG4423 GTP-binding protein-li 99.2 3.8E-14 8.2E-19 87.0 -6.9 90 6-95 23-117 (229)
210 PRK00741 prfC peptide chain re 99.2 3.8E-11 8.3E-16 85.0 6.9 105 4-108 6-138 (526)
211 cd01876 YihA_EngB The YihA (En 99.2 8.3E-11 1.8E-15 71.0 7.5 55 10-67 1-55 (170)
212 cd01886 EF-G Elongation factor 99.2 3.5E-11 7.6E-16 79.0 6.1 97 10-108 1-123 (270)
213 TIGR02729 Obg_CgtA Obg family 99.2 1.6E-10 3.5E-15 77.7 9.3 98 9-108 158-280 (329)
214 TIGR00503 prfC peptide chain r 99.2 1.5E-10 3.2E-15 82.1 9.1 105 4-108 7-139 (527)
215 TIGR00490 aEF-2 translation el 99.2 5.6E-11 1.2E-15 86.9 7.0 83 4-86 15-115 (720)
216 cd01885 EF2 EF2 (for archaea a 99.2 1.2E-10 2.6E-15 74.5 7.4 99 10-108 2-132 (222)
217 cd01896 DRG The developmentall 99.2 2.7E-10 5.8E-15 73.4 9.0 74 10-86 2-83 (233)
218 cd04166 CysN_ATPS CysN_ATPS su 99.2 8.6E-11 1.9E-15 74.4 5.9 77 10-86 1-106 (208)
219 cd01884 EF_Tu EF-Tu subfamily. 99.1 2.9E-10 6.2E-15 71.4 7.2 79 8-86 2-94 (195)
220 PF00009 GTP_EFTU: Elongation 99.1 2.4E-11 5.1E-16 75.7 2.2 102 7-108 2-129 (188)
221 COG0486 ThdF Predicted GTPase 99.1 1.4E-09 3E-14 75.1 10.6 100 7-108 216-331 (454)
222 cd01888 eIF2_gamma eIF2-gamma 99.1 5.9E-10 1.3E-14 70.3 8.2 30 57-86 83-112 (203)
223 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 1.3E-10 2.8E-15 74.6 5.2 76 10-86 1-82 (232)
224 PRK12297 obgE GTPase CgtA; Rev 99.1 1E-09 2.3E-14 75.9 10.0 97 10-108 160-281 (424)
225 PF10662 PduV-EutP: Ethanolami 99.1 5.8E-10 1.3E-14 66.5 7.2 85 10-108 3-96 (143)
226 PRK12296 obgE GTPase CgtA; Rev 99.1 9.9E-10 2.1E-14 77.2 9.3 76 8-86 159-242 (500)
227 TIGR00484 EF-G translation elo 99.1 4.2E-10 9E-15 82.1 7.1 84 3-86 5-104 (689)
228 cd01899 Ygr210 Ygr210 subfamil 99.1 6.7E-10 1.4E-14 74.4 7.6 76 11-86 1-105 (318)
229 TIGR00483 EF-1_alpha translati 99.1 1.1E-09 2.4E-14 76.0 8.6 82 5-86 4-114 (426)
230 TIGR00991 3a0901s02IAP34 GTP-b 99.1 1.2E-09 2.6E-14 72.7 8.3 80 4-86 34-124 (313)
231 PRK12298 obgE GTPase CgtA; Rev 99.1 1.6E-09 3.5E-14 74.4 9.2 75 10-86 161-243 (390)
232 PRK12317 elongation factor 1-a 99.0 1.3E-09 2.7E-14 75.7 7.8 81 6-86 4-113 (425)
233 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 9.5E-10 2.1E-14 65.7 6.2 54 10-67 85-138 (141)
234 PRK12735 elongation factor Tu; 99.0 2.1E-09 4.6E-14 74.0 8.3 81 6-86 10-104 (396)
235 CHL00071 tufA elongation facto 99.0 2.2E-09 4.7E-14 74.2 8.1 81 6-86 10-104 (409)
236 PRK09602 translation-associate 99.0 2.9E-09 6.2E-14 73.3 8.6 78 9-86 2-108 (396)
237 cd01853 Toc34_like Toc34-like 99.0 2E-09 4.3E-14 70.0 7.0 64 4-70 27-92 (249)
238 COG3596 Predicted GTPase [Gene 99.0 7.3E-10 1.6E-14 72.1 4.9 77 7-86 38-123 (296)
239 cd01852 AIG1 AIG1 (avrRpt2-ind 99.0 1.2E-09 2.7E-14 68.4 5.8 76 9-86 1-89 (196)
240 KOG0090 Signal recognition par 99.0 1E-09 2.2E-14 69.0 4.9 82 8-94 38-123 (238)
241 PRK10512 selenocysteinyl-tRNA- 99.0 3.8E-09 8.2E-14 76.2 8.5 76 10-86 2-80 (614)
242 PRK12739 elongation factor G; 99.0 1.6E-09 3.6E-14 79.1 6.5 81 4-86 4-102 (691)
243 PLN03126 Elongation factor Tu; 99.0 3.8E-09 8.3E-14 74.2 8.0 81 6-86 79-173 (478)
244 TIGR00485 EF-Tu translation el 99.0 3.6E-09 7.7E-14 72.9 7.6 81 6-86 10-104 (394)
245 cd01859 MJ1464 MJ1464. This f 98.9 6.2E-09 1.3E-13 63.0 7.2 56 7-66 100-155 (156)
246 PRK00007 elongation factor G; 98.9 3.7E-09 7.9E-14 77.3 7.2 83 4-86 6-104 (693)
247 PRK12736 elongation factor Tu; 98.9 6.7E-09 1.4E-13 71.5 7.8 80 7-86 11-104 (394)
248 cd01858 NGP_1 NGP-1. Autoanti 98.9 8.8E-09 1.9E-13 62.5 7.2 56 7-66 101-156 (157)
249 cd04178 Nucleostemin_like Nucl 98.9 9E-09 1.9E-13 63.5 7.2 55 8-66 117-171 (172)
250 cd04165 GTPBP1_like GTPBP1-lik 98.9 5.4E-09 1.2E-13 67.0 6.3 25 10-34 1-25 (224)
251 cd01856 YlqF YlqF. Proteins o 98.9 8.2E-09 1.8E-13 63.5 6.8 57 7-67 114-170 (171)
252 PRK00049 elongation factor Tu; 98.9 1.3E-08 2.8E-13 70.2 8.1 81 6-86 10-104 (396)
253 COG0370 FeoB Fe2+ transport sy 98.9 2.5E-08 5.4E-13 71.6 9.6 100 7-108 2-115 (653)
254 TIGR03680 eif2g_arch translati 98.9 1.1E-08 2.3E-13 70.8 7.4 80 6-86 2-109 (406)
255 PF00735 Septin: Septin; Inte 98.9 2.3E-08 5.1E-13 66.0 8.5 60 7-66 3-72 (281)
256 COG1160 Predicted GTPases [Gen 98.9 1E-08 2.2E-13 70.7 6.9 99 7-108 177-296 (444)
257 PTZ00258 GTP-binding protein; 98.8 1.6E-08 3.4E-13 69.4 6.8 81 6-86 19-121 (390)
258 PF04548 AIG1: AIG1 family; I 98.8 7.7E-09 1.7E-13 65.7 5.0 57 9-67 1-59 (212)
259 PRK09563 rbgA GTPase YlqF; Rev 98.8 3.1E-08 6.8E-13 65.6 7.8 57 7-67 120-176 (287)
260 PRK05124 cysN sulfate adenylyl 98.8 4.1E-08 8.9E-13 69.1 8.5 81 6-86 25-136 (474)
261 TIGR03596 GTPase_YlqF ribosome 98.8 3.1E-08 6.7E-13 65.3 7.3 57 7-67 117-173 (276)
262 COG1084 Predicted GTPase [Gene 98.8 2.5E-08 5.4E-13 66.4 6.8 57 7-66 167-224 (346)
263 PLN03127 Elongation factor Tu; 98.8 4.3E-08 9.2E-13 68.6 8.3 80 7-86 60-153 (447)
264 PRK09601 GTP-binding protein Y 98.8 4.1E-08 8.9E-13 66.8 7.7 79 8-86 2-102 (364)
265 cd00066 G-alpha G protein alph 98.8 8.7E-08 1.9E-12 64.4 9.0 31 56-86 160-190 (317)
266 TIGR02034 CysN sulfate adenyly 98.8 4E-08 8.7E-13 68.0 7.3 78 9-86 1-109 (406)
267 COG1163 DRG Predicted GTPase [ 98.8 3.8E-08 8.1E-13 65.6 6.8 77 8-86 63-146 (365)
268 smart00010 small_GTPase Small 98.8 4E-08 8.7E-13 56.7 6.1 34 9-42 1-35 (124)
269 PRK04000 translation initiatio 98.8 4.6E-08 1E-12 67.8 7.3 82 4-86 5-114 (411)
270 PLN00116 translation elongatio 98.8 3.8E-08 8.1E-13 73.4 7.3 106 3-108 14-157 (843)
271 PRK05506 bifunctional sulfate 98.7 5.6E-08 1.2E-12 70.6 8.0 82 5-86 21-133 (632)
272 cd01900 YchF YchF subfamily. 98.7 2.8E-08 6E-13 65.4 5.9 76 11-86 1-98 (274)
273 cd01883 EF1_alpha Eukaryotic e 98.7 4.1E-08 8.8E-13 62.7 6.3 77 10-86 1-106 (219)
274 cd01855 YqeH YqeH. YqeH is an 98.7 3.6E-08 7.8E-13 61.5 5.9 56 8-66 127-189 (190)
275 PTZ00416 elongation factor 2; 98.7 6.5E-08 1.4E-12 72.1 7.6 104 5-108 16-151 (836)
276 COG0532 InfB Translation initi 98.7 7E-08 1.5E-12 67.7 7.2 101 8-108 5-114 (509)
277 COG1161 Predicted GTPases [Gen 98.7 6.9E-08 1.5E-12 65.0 6.6 57 7-67 131-187 (322)
278 smart00275 G_alpha G protein a 98.7 1.5E-07 3.3E-12 63.8 8.1 30 57-86 184-213 (342)
279 PRK12740 elongation factor G; 98.6 8.2E-08 1.8E-12 70.1 6.2 93 14-108 1-119 (668)
280 PF05049 IIGP: Interferon-indu 98.6 2.6E-08 5.7E-13 67.9 3.3 79 7-86 34-120 (376)
281 KOG1707 Predicted Ras related/ 98.6 4.1E-07 9E-12 64.5 9.1 103 4-108 421-533 (625)
282 PRK07560 elongation factor EF- 98.6 2.2E-07 4.8E-12 68.5 7.6 82 5-86 17-116 (731)
283 cd01849 YlqF_related_GTPase Yl 98.6 2.9E-07 6.2E-12 55.7 6.8 57 6-66 98-154 (155)
284 KOG1145 Mitochondrial translat 98.6 1.6E-07 3.5E-12 66.4 6.2 100 8-108 153-260 (683)
285 KOG1191 Mitochondrial GTPase [ 98.5 1.6E-07 3.4E-12 65.5 5.0 78 6-86 266-354 (531)
286 PF03193 DUF258: Protein of un 98.5 1.9E-07 4.1E-12 56.9 4.4 58 9-69 36-99 (161)
287 PTZ00141 elongation factor 1- 98.5 8.7E-07 1.9E-11 62.1 8.2 81 6-86 5-114 (446)
288 COG5019 CDC3 Septin family pro 98.5 8.2E-07 1.8E-11 60.1 7.4 61 6-66 21-91 (373)
289 KOG2655 Septin family protein 98.5 8E-07 1.7E-11 60.3 7.1 61 6-66 19-88 (366)
290 COG1618 Predicted nucleotide k 98.5 2.3E-06 5E-11 52.1 8.0 100 6-108 3-137 (179)
291 TIGR00993 3a0901s04IAP86 chlor 98.4 1.7E-06 3.6E-11 62.9 8.4 61 5-68 115-177 (763)
292 KOG1547 Septin CDC10 and relat 98.4 9.3E-07 2E-11 57.1 6.3 61 6-66 44-113 (336)
293 TIGR02836 spore_IV_A stage IV 98.4 3.1E-06 6.6E-11 58.7 8.8 24 8-31 17-40 (492)
294 TIGR03597 GTPase_YqeH ribosome 98.4 1.7E-06 3.7E-11 59.1 7.0 57 9-68 155-215 (360)
295 PLN00043 elongation factor 1-a 98.4 2.1E-06 4.5E-11 60.2 7.4 80 7-86 6-114 (447)
296 PRK12289 GTPase RsgA; Reviewed 98.4 9.9E-07 2.2E-11 60.1 5.7 57 10-69 174-236 (352)
297 PRK13796 GTPase YqeH; Provisio 98.3 1.3E-06 2.8E-11 59.8 5.8 56 9-67 161-220 (365)
298 TIGR00157 ribosome small subun 98.3 1.8E-06 3.9E-11 56.1 5.7 56 9-68 121-182 (245)
299 PRK12288 GTPase RsgA; Reviewed 98.3 2.4E-06 5.2E-11 58.1 6.5 57 11-70 208-270 (347)
300 cd01882 BMS1 Bms1. Bms1 is an 98.3 5.2E-06 1.1E-10 53.3 7.0 73 6-86 37-109 (225)
301 cd01851 GBP Guanylate-binding 98.3 6E-06 1.3E-10 53.0 6.9 79 7-86 6-97 (224)
302 COG2262 HflX GTPases [General 98.2 1.2E-05 2.5E-10 55.3 7.7 100 7-108 191-311 (411)
303 TIGR00092 GTP-binding protein 98.2 1.1E-05 2.4E-10 55.2 7.3 79 8-86 2-103 (368)
304 PRK00098 GTPase RsgA; Reviewed 98.2 6.6E-06 1.4E-10 54.9 6.0 24 9-32 165-188 (298)
305 KOG0705 GTPase-activating prot 98.2 1.2E-06 2.6E-11 62.1 2.6 96 8-108 30-136 (749)
306 COG4917 EutP Ethanolamine util 98.1 2.9E-06 6.3E-11 49.6 3.2 72 10-94 3-82 (148)
307 KOG0082 G-protein alpha subuni 98.1 1.4E-05 3.1E-10 54.2 7.0 31 56-86 194-224 (354)
308 PRK14845 translation initiatio 98.1 6.8E-06 1.5E-10 62.6 5.9 90 19-108 472-585 (1049)
309 COG1162 Predicted GTPases [Gen 98.1 8E-06 1.7E-10 54.3 5.4 58 10-70 166-229 (301)
310 cd01854 YjeQ_engC YjeQ/EngC. 98.1 1.1E-05 2.3E-10 53.6 6.1 60 9-71 162-227 (287)
311 KOG1424 Predicted GTP-binding 98.1 5.5E-06 1.2E-10 58.3 4.8 56 8-67 314-369 (562)
312 PF03266 NTPase_1: NTPase; In 98.1 1.5E-05 3.3E-10 49.1 5.5 52 10-64 1-52 (168)
313 KOG1486 GTP-binding protein DR 98.0 2.5E-05 5.5E-10 51.0 5.9 77 8-86 62-145 (364)
314 COG0012 Predicted GTPase, prob 98.0 2.8E-05 6E-10 53.0 6.2 79 8-86 2-103 (372)
315 COG4108 PrfC Peptide chain rel 98.0 3.5E-05 7.6E-10 53.7 6.6 81 6-86 10-110 (528)
316 PRK08118 topology modulation p 97.9 1E-05 2.2E-10 49.7 3.3 22 10-31 3-24 (167)
317 KOG3859 Septins (P-loop GTPase 97.9 4.2E-05 9.2E-10 50.6 6.1 62 5-66 39-104 (406)
318 COG5256 TEF1 Translation elong 97.9 4E-05 8.8E-10 52.8 6.2 88 7-94 6-125 (428)
319 COG0480 FusA Translation elong 97.9 8.2E-05 1.8E-09 54.8 7.9 104 5-108 7-135 (697)
320 KOG0468 U5 snRNP-specific prot 97.9 5.5E-05 1.2E-09 55.2 6.8 106 3-108 123-256 (971)
321 PF13207 AAA_17: AAA domain; P 97.9 1.3E-05 2.9E-10 46.2 3.2 22 10-31 1-22 (121)
322 PRK07261 topology modulation p 97.9 1.7E-05 3.7E-10 48.9 3.3 23 9-31 1-23 (171)
323 COG0563 Adk Adenylate kinase a 97.9 1.7E-05 3.7E-10 49.2 3.2 23 9-31 1-23 (178)
324 COG1126 GlnQ ABC-type polar am 97.8 2.3E-05 5E-10 50.0 3.7 23 10-32 30-52 (240)
325 PF13671 AAA_33: AAA domain; P 97.8 1.7E-05 3.7E-10 47.0 2.9 19 11-29 2-20 (143)
326 KOG3886 GTP-binding protein [S 97.8 2.1E-05 4.5E-10 50.7 3.1 79 7-86 3-87 (295)
327 KOG1491 Predicted GTP-binding 97.8 7E-05 1.5E-09 50.7 5.1 80 7-86 19-120 (391)
328 PF05783 DLIC: Dynein light in 97.8 8.7E-05 1.9E-09 52.5 5.7 67 7-76 24-92 (472)
329 KOG1144 Translation initiation 97.8 7.5E-05 1.6E-09 55.1 5.5 98 7-108 474-599 (1064)
330 KOG1489 Predicted GTP-binding 97.7 0.00025 5.4E-09 47.7 7.2 75 10-86 198-280 (366)
331 PF00350 Dynamin_N: Dynamin fa 97.7 5.1E-05 1.1E-09 46.1 3.8 23 11-33 1-23 (168)
332 COG1116 TauB ABC-type nitrate/ 97.7 3.4E-05 7.4E-10 50.0 3.0 22 11-32 32-53 (248)
333 PF13521 AAA_28: AAA domain; P 97.7 2.5E-05 5.5E-10 47.5 2.3 22 10-31 1-22 (163)
334 TIGR00150 HI0065_YjeE ATPase, 97.7 0.00027 5.8E-09 41.9 6.3 23 9-31 23-45 (133)
335 PRK06217 hypothetical protein; 97.7 4.7E-05 1E-09 47.3 3.1 23 9-31 2-24 (183)
336 KOG3905 Dynein light intermedi 97.7 8.7E-05 1.9E-09 50.2 4.5 71 7-80 51-123 (473)
337 PF00004 AAA: ATPase family as 97.7 5.2E-05 1.1E-09 44.1 3.1 21 11-31 1-21 (132)
338 KOG2484 GTPase [General functi 97.7 7E-05 1.5E-09 51.5 4.0 58 6-67 250-307 (435)
339 smart00382 AAA ATPases associa 97.6 6.4E-05 1.4E-09 43.5 3.3 24 9-32 3-26 (148)
340 COG3839 MalK ABC-type sugar tr 97.6 4.6E-05 1E-09 51.7 3.0 22 11-32 32-53 (338)
341 cd02019 NK Nucleoside/nucleoti 97.6 7.3E-05 1.6E-09 39.3 3.1 21 11-31 2-22 (69)
342 TIGR02322 phosphon_PhnN phosph 97.6 6.3E-05 1.4E-09 46.4 3.1 22 10-31 3-24 (179)
343 PRK10078 ribose 1,5-bisphospho 97.6 6.8E-05 1.5E-09 46.7 3.3 23 9-31 3-25 (186)
344 PRK03839 putative kinase; Prov 97.6 6.2E-05 1.4E-09 46.5 3.1 22 10-31 2-23 (180)
345 KOG2486 Predicted GTPase [Gene 97.6 0.00049 1.1E-08 45.6 7.2 58 6-66 134-192 (320)
346 PF00005 ABC_tran: ABC transpo 97.6 6.6E-05 1.4E-09 44.2 3.0 22 10-31 13-34 (137)
347 PF07728 AAA_5: AAA domain (dy 97.6 7.2E-05 1.6E-09 44.2 3.1 21 10-30 1-21 (139)
348 PF04665 Pox_A32: Poxvirus A32 97.6 7.3E-05 1.6E-09 48.5 3.3 26 6-31 11-36 (241)
349 PRK14531 adenylate kinase; Pro 97.6 7.2E-05 1.6E-09 46.5 3.2 23 8-30 2-24 (183)
350 PRK14738 gmk guanylate kinase; 97.6 9.8E-05 2.1E-09 46.8 3.8 27 5-31 10-36 (206)
351 COG1136 SalX ABC-type antimicr 97.6 6.5E-05 1.4E-09 48.3 2.9 23 10-32 33-55 (226)
352 COG1117 PstB ABC-type phosphat 97.6 6.1E-05 1.3E-09 48.1 2.6 19 11-29 36-54 (253)
353 cd00071 GMPK Guanosine monopho 97.6 8.6E-05 1.9E-09 44.2 3.1 21 11-31 2-22 (137)
354 PRK14532 adenylate kinase; Pro 97.6 8.1E-05 1.8E-09 46.3 3.1 22 9-30 1-22 (188)
355 PF03205 MobB: Molybdopterin g 97.6 9.4E-05 2E-09 44.2 3.2 21 10-30 2-22 (140)
356 COG3842 PotA ABC-type spermidi 97.6 7.4E-05 1.6E-09 51.0 3.0 22 11-32 34-55 (352)
357 PRK13949 shikimate kinase; Pro 97.5 0.0001 2.3E-09 45.3 3.3 21 10-30 3-23 (169)
358 PRK14530 adenylate kinase; Pro 97.5 9.2E-05 2E-09 47.1 3.1 21 9-29 4-24 (215)
359 COG1217 TypA Predicted membran 97.5 0.00043 9.4E-09 48.8 6.4 79 8-86 5-97 (603)
360 TIGR03263 guanyl_kin guanylate 97.5 9.7E-05 2.1E-09 45.5 3.0 22 10-31 3-24 (180)
361 TIGR00101 ureG urease accessor 97.5 0.00012 2.6E-09 46.2 3.5 23 9-31 2-24 (199)
362 PRK14737 gmk guanylate kinase; 97.5 0.00011 2.3E-09 46.0 3.1 23 9-31 5-27 (186)
363 TIGR00235 udk uridine kinase. 97.5 0.00016 3.4E-09 45.8 3.9 25 6-30 4-28 (207)
364 COG3638 ABC-type phosphate/pho 97.5 0.0001 2.2E-09 47.7 2.9 21 10-30 32-52 (258)
365 PF13238 AAA_18: AAA domain; P 97.5 0.0001 2.2E-09 42.6 2.8 21 11-31 1-21 (129)
366 cd02023 UMPK Uridine monophosp 97.5 0.00011 2.4E-09 46.1 3.1 21 11-31 2-22 (198)
367 TIGR01360 aden_kin_iso1 adenyl 97.5 0.00011 2.4E-09 45.4 3.0 21 9-29 4-24 (188)
368 PTZ00327 eukaryotic translatio 97.5 0.00029 6.3E-09 49.8 5.2 82 5-86 31-146 (460)
369 cd00820 PEPCK_HprK Phosphoenol 97.5 0.00013 2.7E-09 41.7 2.8 21 9-29 16-36 (107)
370 cd03238 ABC_UvrA The excision 97.5 0.00014 2.9E-09 45.2 3.2 22 8-29 21-42 (176)
371 PF13191 AAA_16: AAA ATPase do 97.5 0.00012 2.6E-09 45.0 2.8 23 8-30 24-46 (185)
372 PF13555 AAA_29: P-loop contai 97.4 0.00019 4.2E-09 36.9 3.1 21 10-30 25-45 (62)
373 PRK05480 uridine/cytidine kina 97.4 0.00019 4.2E-09 45.4 3.7 24 7-30 5-28 (209)
374 PF13401 AAA_22: AAA domain; P 97.4 0.00014 3E-09 42.4 2.9 23 9-31 5-27 (131)
375 PRK00300 gmk guanylate kinase; 97.4 0.00014 3.1E-09 45.7 3.1 24 8-31 5-28 (205)
376 COG1120 FepC ABC-type cobalami 97.4 0.00014 2.9E-09 47.7 3.0 21 10-30 30-50 (258)
377 PRK00625 shikimate kinase; Pro 97.4 0.00015 3.3E-09 44.8 3.1 21 10-30 2-22 (173)
378 PRK02496 adk adenylate kinase; 97.4 0.00017 3.6E-09 44.8 3.3 22 9-30 2-23 (184)
379 PTZ00088 adenylate kinase 1; P 97.4 0.00015 3.3E-09 46.8 3.1 23 8-30 6-28 (229)
380 cd00009 AAA The AAA+ (ATPases 97.4 0.00017 3.6E-09 42.1 3.1 25 8-32 19-43 (151)
381 TIGR01313 therm_gnt_kin carboh 97.4 0.00013 2.8E-09 44.4 2.6 21 11-31 1-21 (163)
382 cd01428 ADK Adenylate kinase ( 97.4 0.00015 3.2E-09 45.1 2.9 22 10-31 1-22 (194)
383 PRK08233 hypothetical protein; 97.4 0.00017 3.7E-09 44.3 3.1 23 9-31 4-26 (182)
384 COG4525 TauB ABC-type taurine 97.4 0.00015 3.3E-09 45.9 2.8 20 10-29 33-52 (259)
385 KOG0458 Elongation factor 1 al 97.4 0.0012 2.7E-08 47.5 7.6 88 7-94 176-295 (603)
386 PRK10751 molybdopterin-guanine 97.4 0.00016 3.4E-09 44.8 2.9 22 9-30 7-28 (173)
387 PF05729 NACHT: NACHT domain 97.4 0.00017 3.7E-09 43.4 3.0 21 11-31 3-23 (166)
388 TIGR01351 adk adenylate kinase 97.4 0.00014 3.1E-09 46.1 2.7 21 10-30 1-21 (210)
389 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.4 0.00019 4.1E-09 45.6 3.2 22 10-31 32-53 (218)
390 PRK10646 ADP-binding protein; 97.4 0.0021 4.6E-08 39.0 7.4 22 10-31 30-51 (153)
391 PRK13695 putative NTPase; Prov 97.4 0.00022 4.8E-09 43.9 3.3 22 9-30 1-22 (174)
392 COG5192 BMS1 GTP-binding prote 97.4 0.00065 1.4E-08 49.2 5.9 73 5-86 66-139 (1077)
393 PRK05057 aroK shikimate kinase 97.4 0.00023 5E-09 43.9 3.3 23 8-30 4-26 (172)
394 TIGR00960 3a0501s02 Type II (G 97.4 0.00021 4.6E-09 45.3 3.2 22 10-31 31-52 (216)
395 cd03222 ABC_RNaseL_inhibitor T 97.4 0.00021 4.4E-09 44.4 3.0 23 9-31 26-48 (177)
396 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00021 4.5E-09 44.1 3.1 20 11-30 2-21 (183)
397 PF13173 AAA_14: AAA domain 97.3 0.00021 4.5E-09 41.9 2.8 23 10-32 4-26 (128)
398 cd03225 ABC_cobalt_CbiO_domain 97.3 0.00024 5.3E-09 44.9 3.2 22 10-31 29-50 (211)
399 cd03226 ABC_cobalt_CbiO_domain 97.3 0.00024 5.2E-09 44.8 3.2 22 10-31 28-49 (205)
400 COG0194 Gmk Guanylate kinase [ 97.3 0.00024 5.2E-09 44.3 3.1 25 8-32 4-28 (191)
401 cd03264 ABC_drug_resistance_li 97.3 0.00021 4.6E-09 45.2 3.0 22 10-31 27-48 (211)
402 KOG0066 eIF2-interacting prote 97.3 0.00097 2.1E-08 47.2 6.3 26 6-31 611-636 (807)
403 TIGR02315 ABC_phnC phosphonate 97.3 0.00024 5.2E-09 45.8 3.2 22 10-31 30-51 (243)
404 cd03269 ABC_putative_ATPase Th 97.3 0.00026 5.5E-09 44.8 3.3 22 10-31 28-49 (210)
405 cd03261 ABC_Org_Solvent_Resist 97.3 0.00025 5.4E-09 45.6 3.2 22 10-31 28-49 (235)
406 COG1127 Ttg2A ABC-type transpo 97.3 0.00025 5.4E-09 46.0 3.2 22 11-32 37-58 (263)
407 cd03292 ABC_FtsE_transporter F 97.3 0.00026 5.7E-09 44.8 3.3 22 10-31 29-50 (214)
408 KOG0462 Elongation factor-type 97.3 0.00032 7E-09 50.2 3.9 81 6-86 58-154 (650)
409 TIGR01166 cbiO cobalt transpor 97.3 0.00026 5.7E-09 44.1 3.2 22 10-31 20-41 (190)
410 cd03265 ABC_DrrA DrrA is the A 97.3 0.00026 5.7E-09 45.1 3.3 22 10-31 28-49 (220)
411 TIGR03608 L_ocin_972_ABC putat 97.3 0.00027 5.9E-09 44.5 3.3 22 10-31 26-47 (206)
412 PRK00279 adk adenylate kinase; 97.3 0.00025 5.4E-09 45.1 3.1 22 9-30 1-22 (215)
413 PF02367 UPF0079: Uncharacteri 97.3 0.00058 1.3E-08 40.0 4.3 23 9-31 16-38 (123)
414 TIGR02881 spore_V_K stage V sp 97.3 0.00031 6.6E-09 46.1 3.5 25 6-30 40-64 (261)
415 cd02025 PanK Pantothenate kina 97.3 0.00025 5.3E-09 45.5 3.0 20 11-30 2-21 (220)
416 TIGR02673 FtsE cell division A 97.3 0.00028 6.1E-09 44.7 3.2 22 10-31 30-51 (214)
417 cd03224 ABC_TM1139_LivF_branch 97.3 0.00027 5.8E-09 45.0 3.2 22 10-31 28-49 (222)
418 cd03262 ABC_HisP_GlnQ_permease 97.3 0.00029 6.2E-09 44.6 3.2 22 10-31 28-49 (213)
419 cd03259 ABC_Carb_Solutes_like 97.3 0.00029 6.3E-09 44.6 3.2 22 10-31 28-49 (213)
420 cd01130 VirB11-like_ATPase Typ 97.3 0.00031 6.7E-09 43.8 3.3 24 8-31 25-48 (186)
421 cd03293 ABC_NrtD_SsuB_transpor 97.3 0.0003 6.4E-09 44.8 3.2 22 10-31 32-53 (220)
422 cd03260 ABC_PstB_phosphate_tra 97.3 0.00031 6.8E-09 44.9 3.3 23 10-32 28-50 (227)
423 cd03218 ABC_YhbG The ABC trans 97.3 0.0003 6.5E-09 45.1 3.2 22 10-31 28-49 (232)
424 TIGR02211 LolD_lipo_ex lipopro 97.3 0.00031 6.7E-09 44.7 3.3 22 10-31 33-54 (221)
425 cd03257 ABC_NikE_OppD_transpor 97.3 0.0003 6.4E-09 44.9 3.2 22 10-31 33-54 (228)
426 cd02021 GntK Gluconate kinase 97.3 0.00028 6E-09 42.2 2.9 21 11-31 2-22 (150)
427 PRK13541 cytochrome c biogenes 97.3 0.00032 6.9E-09 43.9 3.2 23 10-32 28-50 (195)
428 PRK07429 phosphoribulokinase; 97.3 0.00046 1E-08 46.8 4.1 30 1-30 1-30 (327)
429 PRK15177 Vi polysaccharide exp 97.3 0.00032 6.9E-09 44.7 3.2 24 9-32 14-37 (213)
430 PHA00729 NTP-binding motif con 97.3 0.00037 8.1E-09 44.9 3.5 23 9-31 18-40 (226)
431 PRK13947 shikimate kinase; Pro 97.3 0.00031 6.7E-09 42.9 3.1 21 10-30 3-23 (171)
432 cd03263 ABC_subfamily_A The AB 97.3 0.00033 7.1E-09 44.6 3.2 23 10-32 30-52 (220)
433 cd03219 ABC_Mj1267_LivG_branch 97.3 0.0003 6.4E-09 45.3 3.1 22 10-31 28-49 (236)
434 cd03258 ABC_MetN_methionine_tr 97.3 0.00033 7.1E-09 45.0 3.2 22 10-31 33-54 (233)
435 cd03301 ABC_MalK_N The N-termi 97.3 0.00034 7.4E-09 44.3 3.3 23 10-32 28-50 (213)
436 cd03256 ABC_PhnC_transporter A 97.3 0.00033 7.1E-09 45.1 3.2 22 10-31 29-50 (241)
437 cd03216 ABC_Carb_Monos_I This 97.3 0.00036 7.8E-09 42.6 3.3 23 10-32 28-50 (163)
438 PRK11248 tauB taurine transpor 97.3 0.00033 7.1E-09 45.8 3.2 23 10-32 29-51 (255)
439 cd03266 ABC_NatA_sodium_export 97.3 0.00034 7.4E-09 44.4 3.2 22 10-31 33-54 (218)
440 cd03229 ABC_Class3 This class 97.2 0.00037 7.9E-09 43.1 3.3 22 10-31 28-49 (178)
441 cd00227 CPT Chloramphenicol (C 97.2 0.00034 7.3E-09 43.1 3.1 22 10-31 4-25 (175)
442 PRK11629 lolD lipoprotein tran 97.2 0.00035 7.5E-09 44.9 3.3 22 10-31 37-58 (233)
443 PRK13540 cytochrome c biogenes 97.2 0.0005 1.1E-08 43.2 3.9 23 10-32 29-51 (200)
444 cd03235 ABC_Metallic_Cations A 97.2 0.00032 6.9E-09 44.4 3.0 22 10-31 27-48 (213)
445 cd01131 PilT Pilus retraction 97.2 0.00034 7.4E-09 44.1 3.1 21 11-31 4-24 (198)
446 COG0536 Obg Predicted GTPase [ 97.2 0.00056 1.2E-08 46.4 4.2 54 11-66 162-216 (369)
447 PRK06547 hypothetical protein; 97.2 0.00046 1E-08 42.7 3.6 25 7-31 14-38 (172)
448 KOG0448 Mitofusin 1 GTPase, in 97.2 0.0028 6.1E-08 46.6 7.9 27 7-33 108-134 (749)
449 PRK14528 adenylate kinase; Pro 97.2 0.00036 7.8E-09 43.5 3.1 21 9-29 2-22 (186)
450 TIGR00073 hypB hydrogenase acc 97.2 0.00042 9.2E-09 43.9 3.5 25 7-31 21-45 (207)
451 PF00625 Guanylate_kin: Guanyl 97.2 0.00036 7.9E-09 43.3 3.1 22 10-31 4-25 (183)
452 TIGR01189 ccmA heme ABC export 97.2 0.00039 8.4E-09 43.6 3.3 23 9-31 27-49 (198)
453 PRK14529 adenylate kinase; Pro 97.2 0.00035 7.5E-09 45.0 3.1 22 9-30 1-22 (223)
454 TIGR01978 sufC FeS assembly AT 97.2 0.00036 7.7E-09 45.0 3.2 22 10-31 28-49 (243)
455 cd03214 ABC_Iron-Siderophores_ 97.2 0.0004 8.8E-09 43.0 3.3 22 10-31 27-48 (180)
456 TIGR03410 urea_trans_UrtE urea 97.2 0.00037 8E-09 44.7 3.2 23 9-31 27-49 (230)
457 PRK10908 cell division protein 97.2 0.00039 8.5E-09 44.3 3.3 22 10-31 30-51 (222)
458 PRK06762 hypothetical protein; 97.2 0.00044 9.5E-09 42.1 3.3 23 9-31 3-25 (166)
459 TIGR02323 CP_lyasePhnK phospho 97.2 0.00038 8.3E-09 45.2 3.2 23 10-32 31-53 (253)
460 TIGR03864 PQQ_ABC_ATP ABC tran 97.2 0.0004 8.6E-09 44.8 3.3 22 10-31 29-50 (236)
461 TIGR03015 pepcterm_ATPase puta 97.2 0.00036 7.7E-09 45.6 3.1 22 10-31 45-66 (269)
462 cd03247 ABCC_cytochrome_bd The 97.2 0.00042 9.1E-09 42.8 3.2 23 10-32 30-52 (178)
463 PRK10895 lipopolysaccharide AB 97.2 0.0004 8.6E-09 44.9 3.2 22 10-31 31-52 (241)
464 PRK11247 ssuB aliphatic sulfon 97.2 0.00039 8.5E-09 45.5 3.3 22 10-31 40-61 (257)
465 cd03296 ABC_CysA_sulfate_impor 97.2 0.0004 8.6E-09 44.8 3.2 22 10-31 30-51 (239)
466 PF00485 PRK: Phosphoribulokin 97.2 0.00036 7.8E-09 43.7 3.0 19 11-29 2-20 (194)
467 cd03297 ABC_ModC_molybdenum_tr 97.2 0.0004 8.7E-09 44.1 3.2 23 9-31 24-46 (214)
468 smart00053 DYNc Dynamin, GTPas 97.2 0.00052 1.1E-08 44.6 3.7 25 8-32 26-50 (240)
469 cd03298 ABC_ThiQ_thiamine_tran 97.2 0.00041 8.8E-09 43.9 3.2 22 10-31 26-47 (211)
470 cd03223 ABCD_peroxisomal_ALDP 97.2 0.00044 9.5E-09 42.3 3.2 22 10-31 29-50 (166)
471 PRK11124 artP arginine transpo 97.2 0.00041 8.8E-09 44.8 3.3 23 10-32 30-52 (242)
472 PRK13543 cytochrome c biogenes 97.2 0.0004 8.8E-09 44.1 3.2 22 10-31 39-60 (214)
473 PRK13539 cytochrome c biogenes 97.2 0.00042 9.2E-09 43.8 3.3 23 10-32 30-52 (207)
474 cd03215 ABC_Carb_Monos_II This 97.2 0.00042 9.1E-09 43.0 3.2 23 10-32 28-50 (182)
475 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.00042 9.2E-09 41.5 3.1 65 10-86 28-94 (144)
476 cd03268 ABC_BcrA_bacitracin_re 97.2 0.00043 9.2E-09 43.7 3.2 22 10-31 28-49 (208)
477 PF01637 Arch_ATPase: Archaeal 97.2 0.00037 7.9E-09 44.1 3.0 25 8-32 20-44 (234)
478 cd00464 SK Shikimate kinase (S 97.2 0.00035 7.5E-09 41.8 2.7 21 10-30 1-21 (154)
479 PRK14242 phosphate transporter 97.2 0.00044 9.5E-09 45.0 3.3 22 10-31 34-55 (253)
480 cd03237 ABC_RNaseL_inhibitor_d 97.2 0.00043 9.3E-09 45.1 3.2 22 10-31 27-48 (246)
481 KOG1954 Endocytosis/signaling 97.2 0.0022 4.7E-08 44.4 6.6 29 7-35 57-85 (532)
482 PF05496 RuvB_N: Holliday junc 97.2 0.00045 9.7E-09 44.5 3.2 23 8-30 50-72 (233)
483 PRK00131 aroK shikimate kinase 97.2 0.00045 9.8E-09 42.1 3.2 23 8-30 4-26 (175)
484 PRK14526 adenylate kinase; Pro 97.2 0.00042 9.2E-09 44.2 3.1 22 9-30 1-22 (211)
485 smart00072 GuKc Guanylate kina 97.2 0.00044 9.6E-09 43.0 3.2 23 10-32 4-26 (184)
486 cd03254 ABCC_Glucan_exporter_l 97.2 0.00044 9.6E-09 44.2 3.2 23 10-32 31-53 (229)
487 TIGR00176 mobB molybdopterin-g 97.2 0.00045 9.8E-09 42.0 3.1 20 11-30 2-21 (155)
488 PRK10247 putative ABC transpor 97.2 0.00045 9.8E-09 44.2 3.3 22 10-31 35-56 (225)
489 cd03233 ABC_PDR_domain1 The pl 97.2 0.00041 8.9E-09 43.8 3.0 23 10-32 35-57 (202)
490 cd03230 ABC_DR_subfamily_A Thi 97.2 0.00049 1.1E-08 42.3 3.2 22 10-31 28-49 (173)
491 cd03231 ABC_CcmA_heme_exporter 97.2 0.00048 1E-08 43.4 3.3 23 9-31 27-49 (201)
492 PRK14247 phosphate ABC transpo 97.2 0.00046 9.9E-09 44.8 3.2 22 10-31 31-52 (250)
493 cd03246 ABCC_Protease_Secretio 97.2 0.00052 1.1E-08 42.2 3.3 23 10-32 30-52 (173)
494 cd03232 ABC_PDR_domain2 The pl 97.2 0.00048 1.1E-08 43.1 3.2 22 10-31 35-56 (192)
495 PRK11264 putative amino-acid A 97.2 0.00047 1E-08 44.7 3.3 22 10-31 31-52 (250)
496 PRK13538 cytochrome c biogenes 97.2 0.00048 1E-08 43.4 3.2 23 10-32 29-51 (204)
497 TIGR01184 ntrCD nitrate transp 97.2 0.00048 1E-08 44.3 3.3 23 10-32 13-35 (230)
498 TIGR02770 nickel_nikD nickel i 97.2 0.00047 1E-08 44.3 3.2 23 10-32 14-36 (230)
499 cd03116 MobB Molybdenum is an 97.2 0.00049 1.1E-08 42.0 3.1 21 10-30 3-23 (159)
500 PRK14274 phosphate ABC transpo 97.2 0.00049 1.1E-08 44.9 3.3 22 10-31 40-61 (259)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3e-30 Score=157.88 Aligned_cols=107 Identities=77% Similarity=1.220 Sum_probs=99.8
Q ss_pred CCCCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcC
Q 033918 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (109)
Q Consensus 1 ~~~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (109)
|.+..++.|||+++|++|||||+|+.||.++.|.+.|..|.|.++..+++.++++.+++++||+.||++|+.+..+||+.
T Consensus 2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEE----ecccchhhhc--------cCCCCCCEEEe
Q 033918 81 AHGIIV----GDLNSFLQQS--------FSSSSTPFCLF 107 (109)
Q Consensus 81 ~~~iv~----~~~~s~~~~~--------~~~~~~P~i~v 107 (109)
||++|| |+++||+++. ....++|.+||
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLV 120 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLV 120 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEE
Confidence 999999 9999999965 33457788876
No 2
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2e-25 Score=138.06 Aligned_cols=104 Identities=67% Similarity=1.100 Sum_probs=97.1
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
++++.+||+++|+++||||+++.||..+.|...+..|.|.++..+++.+++..+.+++||+.||++++.+...||+.|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEE----ecccchhhhc--------cCCCCCCEEEe
Q 033918 84 IIV----GDLNSFLQQS--------FSSSSTPFCLF 107 (109)
Q Consensus 84 iv~----~~~~s~~~~~--------~~~~~~P~i~v 107 (109)
+++ ++..||+++. ..+..+|++||
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~Lv 123 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILV 123 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEe
Confidence 998 9999999955 34457888876
No 3
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.7e-25 Score=136.16 Aligned_cols=91 Identities=43% Similarity=0.752 Sum_probs=86.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
-+.+|++++|+.+||||||+.||..+.|...|.+|.|.+|-++++.+.+..+.+++|||.|||+|+.+.+.|+++++++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred E----ecccchhhhc
Q 033918 86 V----GDLNSFLQQS 96 (109)
Q Consensus 86 ~----~~~~s~~~~~ 96 (109)
+ +|+.||++..
T Consensus 100 iVyDit~~~Sfe~t~ 114 (221)
T KOG0094|consen 100 IVYDITDRNSFENTS 114 (221)
T ss_pred EEEeccccchHHHHH
Confidence 8 9999999854
No 4
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.92 E-value=1.7e-24 Score=135.09 Aligned_cols=104 Identities=45% Similarity=0.695 Sum_probs=92.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
.+..+||+++|+++||||||++++.++.+...+.++.+.++....+.+++..+.+++||++|++++..++..+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45789999999999999999999999999888888888888778888888899999999999999999999999999999
Q ss_pred EE----ecccchhhhc-------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS-------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~-------~~~~~~P~i~v~ 108 (109)
++ ++++||+++. ....++|++||.
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVG 117 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVG 117 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 99 8899999855 223688998874
No 5
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.92 E-value=1.5e-24 Score=136.51 Aligned_cols=100 Identities=50% Similarity=0.865 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+.|+++|++|||||||+++|..+.|.+.+.+|.+.++....+.+++..+.+++||++|++++..++..|+++||++++
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 468999999999999999999999999999999988888888898889999999999999999999999999999999
Q ss_pred --ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++||+++. ....++|+++|.
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVg 112 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVG 112 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 8999998854 223578988874
No 6
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.92 E-value=5e-25 Score=131.54 Aligned_cols=93 Identities=58% Similarity=1.007 Sum_probs=88.1
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
.....+||++||++|||||||+.+|..+.|.+..+.+.|.++..+.+.+++..+++.|||+.|+++|+.+.+.||+.|.+
T Consensus 7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 45668999999999999999999999999998888889999999999999999999999999999999999999999999
Q ss_pred EEE----ecccchhhhc
Q 033918 84 IIV----GDLNSFLQQS 96 (109)
Q Consensus 84 iv~----~~~~s~~~~~ 96 (109)
+|+ +.+++|.+++
T Consensus 87 iIlVYDVT~Rdtf~kLd 103 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLD 103 (209)
T ss_pred eEEEEEccchhhHHhHH
Confidence 998 9999999876
No 7
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.1e-24 Score=134.81 Aligned_cols=105 Identities=54% Similarity=0.853 Sum_probs=98.2
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCc
Q 033918 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (109)
Q Consensus 3 ~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 82 (109)
.+.++.|||+++|+++||||-|+.||..++|..+..+|.|.++....+.++++.++.+|||+.||++|+.+...||+.|.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEE----ecccchhhhc--------cCCCCCCEEEe
Q 033918 83 GIIV----GDLNSFLQQS--------FSSSSTPFCLF 107 (109)
Q Consensus 83 ~iv~----~~~~s~~~~~--------~~~~~~P~i~v 107 (109)
++++ +.+.+|+++. +..++++++||
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLv 125 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLV 125 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 9998 8999999855 55679999987
No 8
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.92 E-value=5.1e-24 Score=133.03 Aligned_cols=100 Identities=28% Similarity=0.583 Sum_probs=87.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
.+||+++|+++||||||+.++..+.|.+.+.||.+..+. ..+.+++..+.+.+||++|++++..+++.+++++|++++
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 589999999999999999999999999999999986554 456778889999999999999999999999999999998
Q ss_pred ---ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 ---GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++||+++. ....++|++||.
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvg 114 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVG 114 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 8899998864 123578998874
No 9
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.92 E-value=6.5e-24 Score=131.75 Aligned_cols=103 Identities=24% Similarity=0.452 Sum_probs=89.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
+...+||+++|+++||||||++++..+.|...|.||.+..+. ..+.+++..+.+.+||++|++++..+++.+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 456899999999999999999999999999999999986554 6678888899999999999999999999999999999
Q ss_pred EE----ecccchhhh-c-------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQ-S-------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~-~-------~~~~~~P~i~v~ 108 (109)
++ +++.||+++ . ...++.|++||.
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVg 116 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVG 116 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEe
Confidence 88 899999985 3 223578988873
No 10
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.2e-24 Score=129.71 Aligned_cols=92 Identities=59% Similarity=0.982 Sum_probs=87.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
....+|++++|+.|||||+|+.||.++.|.+.+..|.|.++..+.++++++++++++||+.|++.++.....||+.|.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EE----ecccchhhhc
Q 033918 85 IV----GDLNSFLQQS 96 (109)
Q Consensus 85 v~----~~~~s~~~~~ 96 (109)
++ +.++||+.+.
T Consensus 83 lLVydit~r~sF~hL~ 98 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLT 98 (216)
T ss_pred EEEEEccchhhHHHHH
Confidence 88 9999999865
No 11
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.91 E-value=2.4e-24 Score=130.91 Aligned_cols=93 Identities=39% Similarity=0.773 Sum_probs=87.7
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
.....+||+++|++|||||||++++.+++|...|..|+|-++-.+.+.++++.+.++||||.|+++|+.+.-.+|+.||+
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEE----ecccchhhhc
Q 033918 84 IIV----GDLNSFLQQS 96 (109)
Q Consensus 84 iv~----~~~~s~~~~~ 96 (109)
.++ +++.||++++
T Consensus 85 Cvlvydv~~~~Sfe~L~ 101 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLE 101 (210)
T ss_pred EEEEeecCChhhhccHH
Confidence 998 8899999966
No 12
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.91 E-value=1.5e-23 Score=129.58 Aligned_cols=99 Identities=31% Similarity=0.606 Sum_probs=87.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|+++||||||+.++..+.|...|.||.+..+. ..+.+++..+.+.+||++|++++..++..++++++++++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 69999999999999999999999999999999986654 566778889999999999999999999999999999999
Q ss_pred --ecccchhhh-c-------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQ-S-------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~-~-------~~~~~~P~i~v~ 108 (109)
++++||+++ . ....++|++||.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvg 112 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVG 112 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 889999885 2 223578999874
No 13
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=1.5e-23 Score=131.65 Aligned_cols=100 Identities=40% Similarity=0.744 Sum_probs=87.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeC-CeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
+||+++|++|||||||++++.++.+...+.++.+.++....+..+ +..+.+.+||++|++++..++..++++++++++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999999999999988877777777 778999999999999999999999999999998
Q ss_pred ---ecccchhhhcc------------CCCCCCEEEee
Q 033918 87 ---GDLNSFLQQSF------------SSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~~~------------~~~~~P~i~v~ 108 (109)
++++||+++.. ...++|+++|.
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~ 117 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLA 117 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEE
Confidence 78889887531 13678998874
No 14
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.91 E-value=2.2e-23 Score=128.55 Aligned_cols=100 Identities=29% Similarity=0.515 Sum_probs=86.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
.+||+++|++|||||||++++..+.|...|.|+.+..+. ..+.+++..+.+.+||++|++++..++..+++++|++++
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 479999999999999999999999999999999986664 456778888999999999999999999999999999998
Q ss_pred ---ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 ---GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++||+++. ....++|+++|.
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvg 112 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 112 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 8888998753 123578998874
No 15
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.91 E-value=2.4e-23 Score=127.05 Aligned_cols=101 Identities=48% Similarity=0.862 Sum_probs=88.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
.+||+++|++|||||||++++..++|...+.++.+.++....+..++..+.+.+||++|++++...+..++++++++++
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999999999999998889898888877777888888999999999999999999999999999999
Q ss_pred ---ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 ---GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++||+.+. ......|+++|.
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~ 114 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIG 114 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 8888998754 123567888764
No 16
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.91 E-value=2.3e-23 Score=128.85 Aligned_cols=100 Identities=25% Similarity=0.469 Sum_probs=87.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
.+||+++|+++||||||++++..+.|...+.|+.+..+. ..+.+++..+.+.+||++|++++..+++.+++++|++++
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 379999999999999999999999999999999876654 567888889999999999999999999999999999988
Q ss_pred ---ecccchhhh-c-------cCCCCCCEEEee
Q 033918 87 ---GDLNSFLQQ-S-------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~-~-------~~~~~~P~i~v~ 108 (109)
++++||+++ . ...+++|++||.
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVg 112 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVG 112 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEE
Confidence 899999984 3 223578998873
No 17
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.1e-23 Score=128.62 Aligned_cols=91 Identities=51% Similarity=0.836 Sum_probs=86.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
...+|++++|+.+||||||+.||..++|.+...||.|--|..+++.+++..+++.||||.|+++|..+.++||++|++++
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35799999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred E----ecccchhhhc
Q 033918 86 V----GDLNSFLQQS 96 (109)
Q Consensus 86 ~----~~~~s~~~~~ 96 (109)
+ ++.+||..++
T Consensus 83 vvYDit~~~SF~~aK 97 (200)
T KOG0092|consen 83 VVYDITDEESFEKAK 97 (200)
T ss_pred EEEecccHHHHHHHH
Confidence 8 9999999866
No 18
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.90 E-value=4.3e-23 Score=131.32 Aligned_cols=104 Identities=27% Similarity=0.444 Sum_probs=91.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
....+||+++|++|||||||++++..+++...+.++.+.++....+..++..+.+.+||++|++++..++..+++.++++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 36789999999999999999999999999999999999888877777777789999999999999999999999999999
Q ss_pred EE----ecccchhhhc-------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS-------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~-------~~~~~~P~i~v~ 108 (109)
++ ++++||+++. ....++|+++|.
T Consensus 90 ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvg 124 (219)
T PLN03071 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 124 (219)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 88 8889998754 224578999874
No 19
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.90 E-value=2.7e-23 Score=132.38 Aligned_cols=99 Identities=24% Similarity=0.471 Sum_probs=87.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|+++||||||+.+|..+.|++.|.||.+.++. ..+.+++..+.+.+||++|++.|..+++.+++++|++++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999999999999986664 567788889999999999999999999999999999999
Q ss_pred --ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++||+++. ....++|++||.
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVg 112 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVG 112 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 8889998863 223679999874
No 20
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.90 E-value=6.6e-23 Score=125.28 Aligned_cols=103 Identities=70% Similarity=1.080 Sum_probs=89.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
++.+||+++|++|||||||++++.+++|...+.++.+.++....+..++..+.+.+||++|++++..++..+++++|+++
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 35799999999999999999999999999999999988887777788888899999999999999999999999999999
Q ss_pred E----ecccchhhhc--------cCCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+ ++++||+.+. .....+|+++|.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~ 115 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVG 115 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEE
Confidence 9 7888888753 123568888774
No 21
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.90 E-value=6.1e-23 Score=127.36 Aligned_cols=88 Identities=28% Similarity=0.578 Sum_probs=81.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|+++||||||++++..+.|.+.|.||.+.++....+.+++..+.+.+||++|++++..++..+++++|++++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999999999999999988887788888889999999999999999999999999999997
Q ss_pred --ecccchhhhc
Q 033918 87 --GDLNSFLQQS 96 (109)
Q Consensus 87 --~~~~s~~~~~ 96 (109)
++++||+++.
T Consensus 81 D~t~~~s~~~i~ 92 (182)
T cd04128 81 DLTRKSTLNSIK 92 (182)
T ss_pred ECcCHHHHHHHH
Confidence 8888988743
No 22
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.90 E-value=7.5e-23 Score=125.86 Aligned_cols=100 Identities=31% Similarity=0.515 Sum_probs=86.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
.+||+++|++|||||||++++..++|...+.|+.+..+. ..+.+++..+.+.+||++|++++..++..+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 479999999999999999999999999889999875553 556778888999999999999999999999999999998
Q ss_pred ---ecccchhhhc-------c--CCCCCCEEEee
Q 033918 87 ---GDLNSFLQQS-------F--SSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~~-------~--~~~~~P~i~v~ 108 (109)
+++.||+.+. . ...++|+++|.
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvg 114 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVG 114 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 8889998853 1 23579999875
No 23
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=6.4e-23 Score=131.35 Aligned_cols=101 Identities=24% Similarity=0.454 Sum_probs=88.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
..+||+++|+++||||||+.+|..+.|...|.|+.+.++. ..+.+++..+.+.+||++|+++|..+++.++++||++++
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 5789999999999999999999999999999999986664 567888899999999999999999999999999999999
Q ss_pred ----ecccchhhh-c-------cCCCCCCEEEee
Q 033918 87 ----GDLNSFLQQ-S-------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~~~~-~-------~~~~~~P~i~v~ 108 (109)
++++||+++ . ......|++||.
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVg 124 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYCPSTRILLIG 124 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 899999873 2 223578988874
No 24
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.90 E-value=1e-22 Score=123.47 Aligned_cols=100 Identities=30% Similarity=0.540 Sum_probs=84.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
.+||+++|++|||||||++++..+.+...+.++.+. .+...+.+++..+.+.+||++|++++..++..+++.++++++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 379999999999999999999999998888888763 444667788888999999999999999999999999999998
Q ss_pred ---ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 ---GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
++++||+++. ....++|+++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 113 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVG 113 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 7778887743 123578998874
No 25
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.90 E-value=6.1e-23 Score=129.15 Aligned_cols=88 Identities=26% Similarity=0.501 Sum_probs=78.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeC-----CeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-----GKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
+||+++|+++||||||++++.++.|.+.+.+|.+.++..+.+.+. +..+.+++||++|++++..++..+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999999999999877766666653 467899999999999999999999999999
Q ss_pred EEE----ecccchhhhc
Q 033918 84 IIV----GDLNSFLQQS 96 (109)
Q Consensus 84 iv~----~~~~s~~~~~ 96 (109)
+++ ++++||+++.
T Consensus 81 iIlVyDvtn~~Sf~~l~ 97 (202)
T cd04102 81 IILVHDLTNRKSSQNLQ 97 (202)
T ss_pred EEEEEECcChHHHHHHH
Confidence 999 8999998854
No 26
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.1e-23 Score=123.82 Aligned_cols=96 Identities=54% Similarity=0.959 Sum_probs=89.4
Q ss_pred CCCCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcC
Q 033918 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (109)
Q Consensus 1 ~~~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (109)
|...+++.+|++++|+.|.|||+|+++|+.++|.....-+.|.++.++.+.+.++.++++|||+.|+++|+...+.||+.
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 35567889999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred CcEEEE----ecccchhhhc
Q 033918 81 AHGIIV----GDLNSFLQQS 96 (109)
Q Consensus 81 ~~~iv~----~~~~s~~~~~ 96 (109)
|-+.++ ++++||+.+.
T Consensus 82 AAGAlLVYD~TsrdsfnaLt 101 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALT 101 (214)
T ss_pred ccceEEEEeccchhhHHHHH
Confidence 888877 9999999865
No 27
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.90 E-value=1.5e-22 Score=123.17 Aligned_cols=100 Identities=38% Similarity=0.583 Sum_probs=85.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|++|||||||++++..+++.+.+.++.+.+.......+++..+.+.+||++|++++..++..+++.+|++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999999988888887766666667778888999999999999999999999999999999
Q ss_pred --ecccchhhhc-------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS-------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~-------~~~~~~P~i~v~ 108 (109)
+++.+|+++. ....++|+++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~ 111 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVA 111 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 6677877643 223478999875
No 28
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.90 E-value=1.5e-22 Score=124.33 Aligned_cols=86 Identities=49% Similarity=0.903 Sum_probs=79.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE---
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV--- 86 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~--- 86 (109)
||+++|++|||||||++++.++.|.+.|.|+.+.++....+.+++....+++||++|++++..++..+++++|++++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 89999999999999999999999999999999988877778888888999999999999999999999999999999
Q ss_pred -ecccchhhh
Q 033918 87 -GDLNSFLQQ 95 (109)
Q Consensus 87 -~~~~s~~~~ 95 (109)
++++||+.+
T Consensus 82 ~~~~~s~~~~ 91 (170)
T cd04108 82 LTDVASLEHT 91 (170)
T ss_pred CcCHHHHHHH
Confidence 677788763
No 29
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.89 E-value=2e-22 Score=122.86 Aligned_cols=101 Identities=78% Similarity=1.171 Sum_probs=87.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
.+||+++|++|||||||++++.++++...+.++.+.++....+..++..+.+.+||++|++++..++..+++.+|++++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 5899999999999999999999999988888988888877888888888999999999999999999999999999999
Q ss_pred ---ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 ---GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++||+++. .....+|++++.
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~ 114 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 114 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEE
Confidence 7788888744 122568888874
No 30
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.89 E-value=2.4e-22 Score=122.93 Aligned_cols=104 Identities=41% Similarity=0.740 Sum_probs=89.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
.+..+||+++|+++||||||++++.++.+...+.++.+.++....+..++..+.+++||++|++++..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 34679999999999999999999999999888888888777767778888899999999999999999999999999999
Q ss_pred EE----ecccchhhhcc------------CCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQSF------------SSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~~------------~~~~~P~i~v~ 108 (109)
++ ++++||+.+.. ...++|+++|.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~ 121 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLG 121 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 87 77888887431 12468998874
No 31
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.89 E-value=1.8e-22 Score=122.65 Aligned_cols=100 Identities=24% Similarity=0.638 Sum_probs=87.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|++|||||||++++.++++...+.++.+.++....+..++..+.+++||++|++++..+++.+++.++++++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999999999999999988877788888888999999999999999999999999999999
Q ss_pred --ecccchhhhcc--------C-----CCCCCEEEee
Q 033918 87 --GDLNSFLQQSF--------S-----SSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~~--------~-----~~~~P~i~v~ 108 (109)
++++||+.+.. . ..+.|+++|.
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 117 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCA 117 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEE
Confidence 77778776431 1 1468888875
No 32
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.89 E-value=2.1e-22 Score=122.72 Aligned_cols=102 Identities=52% Similarity=0.889 Sum_probs=87.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
+.+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++++|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 56999999999999999999999999988888888877777777888877899999999999999999999999999999
Q ss_pred ----ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 ----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++||+.+. ....++|+++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~ 115 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIG 115 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEE
Confidence 7777887743 223578888874
No 33
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.89 E-value=2.1e-22 Score=122.35 Aligned_cols=100 Identities=33% Similarity=0.569 Sum_probs=85.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
++||+++|++|||||||++++..+.+...+.++.+ ++....+.+++....+++||++|++++..++..+++++|++++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999999888888775 4455677778888899999999999999999999999999998
Q ss_pred ---ecccchhhhcc---------CCCCCCEEEee
Q 033918 87 ---GDLNSFLQQSF---------SSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~~~---------~~~~~P~i~v~ 108 (109)
++++||+++.. ...++|+++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~ 113 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVG 113 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 88888887542 23579998874
No 34
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.89 E-value=1.9e-22 Score=122.70 Aligned_cols=100 Identities=53% Similarity=0.916 Sum_probs=87.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|++|+|||||++++.++.+.+.+.++.+.++....+.+.+..+.+.+||++|++++..++..+++.+|++++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 589999999999999999999999998899999988877788888888999999999999999999999999999999
Q ss_pred --ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++||+.+. ....++|+++|.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvg 112 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIG 112 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 7888998854 222468888874
No 35
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.89 E-value=1.9e-22 Score=124.26 Aligned_cols=99 Identities=30% Similarity=0.573 Sum_probs=85.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|++|||||||+.++..+.|...+.|+.+..+ ...+..++..+.+.+||++|++++..+++.+++.+|++++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 6999999999999999999999999999999886433 4566778888999999999999999999999999999998
Q ss_pred --ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++||+++. ....++|+++|.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvg 112 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVG 112 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 8889998853 223478999874
No 36
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.89 E-value=2.3e-22 Score=126.26 Aligned_cols=104 Identities=65% Similarity=1.021 Sum_probs=89.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
.+..+||+++|++|||||||++++.++.+...+.++.+.++....+.+.+..+.+.+||++|++.+..++..++++++++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 34579999999999999999999999999888999998878777777778788999999999999999999999999988
Q ss_pred EE----ecccchhhhc-------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS-------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~-------~~~~~~P~i~v~ 108 (109)
++ ++++||+.+. .....+|+++|.
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVg 117 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVG 117 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 88 7888888743 233568888774
No 37
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.89 E-value=2.5e-22 Score=122.51 Aligned_cols=100 Identities=52% Similarity=0.911 Sum_probs=85.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|++|||||||++++.++++...+.++.+.++....+..++..+.+.+||++|++++..++..+++.++++++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 799999999999999999999999988899998877776677777778999999999999999999999999999998
Q ss_pred --ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++||+.+. ......|+++|.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~ 113 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVG 113 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 7778887644 122467888774
No 38
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.89 E-value=3.3e-22 Score=122.63 Aligned_cols=103 Identities=23% Similarity=0.322 Sum_probs=88.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
...+||+++|++|||||||++++.++.|. ..|.||.+.++....+.+++....+.+||++|++.+..++..++.++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35799999999999999999999999998 88999988777666777788888999999999999999999999999999
Q ss_pred EE----ecccchhhhc------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~------~~~~~~P~i~v~ 108 (109)
++ +++.+|+++. ....++|+++|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~ 115 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVA 115 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 99 7778887742 122478999885
No 39
>PTZ00369 Ras-like protein; Provisional
Probab=99.89 E-value=2.5e-22 Score=125.09 Aligned_cols=101 Identities=31% Similarity=0.527 Sum_probs=86.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
..+||+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+++||++|++++..++..+++.++++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 469999999999999999999999999888889887655 3566778888999999999999999999999999999998
Q ss_pred ----ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 ----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
++++||+.+. ....++|+++|.
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~ 117 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVG 117 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 7788887754 123588998874
No 40
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.89 E-value=2.1e-22 Score=122.08 Aligned_cols=100 Identities=37% Similarity=0.688 Sum_probs=86.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeC--CeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD--GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
+||+++|++++|||||++++..+.+...+.++.+.++....+.+. +..+.+++||++|++++..++..+++.++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999988899998888766666666 668899999999999999999999999999998
Q ss_pred ----ecccchhhhc-------cCCCCCCEEEee
Q 033918 87 ----GDLNSFLQQS-------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~~~~~-------~~~~~~P~i~v~ 108 (109)
++++||+.+. ....++|+++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~ 113 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQ 113 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 7788888754 223589998875
No 41
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.89 E-value=3.4e-22 Score=122.28 Aligned_cols=103 Identities=52% Similarity=0.862 Sum_probs=89.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
+..+||+++|++|||||||++++.++++...+.++.+.++....+..++....+.+||++|++++..++..+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 56799999999999999999999999988888888888887778888888889999999999999999999999999999
Q ss_pred E----ecccchhhhc--------cCCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+ ++++||+++. ....++|+++|.
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~ 116 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIG 116 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 9 7788888754 123578998875
No 42
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.89 E-value=2.8e-23 Score=122.64 Aligned_cols=104 Identities=67% Similarity=1.069 Sum_probs=92.7
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
+....+|.+++|++|||||+|+.+|..+.|.+.|..|.|.++..+++.+++..++++|||+.|+++|+.+...||+..++
T Consensus 4 ~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg 83 (198)
T KOG0079|consen 4 DYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG 83 (198)
T ss_pred cHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEE----ecccchhhhc-------cCCCCCCEEEe
Q 033918 84 IIV----GDLNSFLQQS-------FSSSSTPFCLF 107 (109)
Q Consensus 84 iv~----~~~~s~~~~~-------~~~~~~P~i~v 107 (109)
+++ ++.+||.+.. ...+-+|-+||
T Consensus 84 v~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLV 118 (198)
T KOG0079|consen 84 VIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLV 118 (198)
T ss_pred EEEEEECcchhhhHhHHHHHHHHHhcCccccceec
Confidence 998 9999998844 23345565554
No 43
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.89 E-value=3.3e-22 Score=123.29 Aligned_cols=103 Identities=41% Similarity=0.798 Sum_probs=86.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeC----------CeEEEEEEEeCCCccccccchh
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD----------GKTIKLQIWDTAGQERFRTITS 75 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~ 75 (109)
++.+||+++|++|||||||++++.++.+...+.++.+.++....+... +..+.+.+||++|++++..++.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 467999999999999999999999999999999998877766655543 3568899999999999999999
Q ss_pred hhhcCCcEEEE----ecccchhhhcc---------CCCCCCEEEee
Q 033918 76 SYYRGAHGIIV----GDLNSFLQQSF---------SSSSTPFCLFL 108 (109)
Q Consensus 76 ~~~~~~~~iv~----~~~~s~~~~~~---------~~~~~P~i~v~ 108 (109)
.+++++|++++ ++++||+++.. ...+.|+++|.
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~ 127 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCG 127 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 99999999998 78889988641 12477888774
No 44
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.89 E-value=3.1e-22 Score=121.76 Aligned_cols=100 Identities=31% Similarity=0.592 Sum_probs=84.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
++||+++|++|||||||++++..+.+.+.+.++.+..+. ..+..++..+.+++||++|++++..++..+++.+|++++
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 479999999999999999999999988888888875543 567777888999999999999999999999999999998
Q ss_pred ---ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 ---GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
++++||+.+. ....++|+++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 113 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 113 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 6778887643 233679999875
No 45
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.89 E-value=4.1e-22 Score=120.46 Aligned_cols=100 Identities=32% Similarity=0.561 Sum_probs=83.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
++||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.++++++
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 47999999999999999999999999888888887544 4566777778889999999999999999999999999887
Q ss_pred ---ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 ---GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+++.+|+++. ....++|+++|.
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~ 113 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVG 113 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 7777887743 123578998875
No 46
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.89 E-value=5.1e-22 Score=121.46 Aligned_cols=100 Identities=29% Similarity=0.591 Sum_probs=86.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++++..++..++..+|++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 589999999999999999999999888899999888877777777788999999999999999999999999999988
Q ss_pred --ecccchhhhc-------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS-------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~-------~~~~~~P~i~v~ 108 (109)
++++||+++. ....++|+++|.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~ 111 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCG 111 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 8888887643 223489999874
No 47
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.89 E-value=2.7e-22 Score=121.70 Aligned_cols=98 Identities=40% Similarity=0.778 Sum_probs=87.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE---
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV--- 86 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~--- 86 (109)
||+++|+++||||||+++|.++.|.+.+.++.+.+.....+..++..+.+.+||++|++++..++..++..+|++++
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999888888999999999999999999999999999999999999998
Q ss_pred -ecccchhhhc--------cCCCCCCEEEe
Q 033918 87 -GDLNSFLQQS--------FSSSSTPFCLF 107 (109)
Q Consensus 87 -~~~~s~~~~~--------~~~~~~P~i~v 107 (109)
++++||+++. ......|++++
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivv 110 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVV 110 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEE
T ss_pred ccccccccccccccccccccccccccceee
Confidence 8899998855 22235777776
No 48
>PLN03110 Rab GTPase; Provisional
Probab=99.89 E-value=7.1e-22 Score=125.49 Aligned_cols=105 Identities=51% Similarity=0.827 Sum_probs=91.1
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
+.++.+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 45578999999999999999999999999888888999988888888888888999999999999999999999999998
Q ss_pred EEE----ecccchhhhcc--------CCCCCCEEEee
Q 033918 84 IIV----GDLNSFLQQSF--------SSSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~~~~--------~~~~~P~i~v~ 108 (109)
+++ ++++||+++.. ...++|+++|.
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~ 124 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAG 124 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 888 67888877541 22478988874
No 49
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.88 E-value=5.8e-22 Score=120.19 Aligned_cols=100 Identities=48% Similarity=0.832 Sum_probs=87.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|++|||||||++++.++++...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+|++++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 589999999999999999999999988888888888887778888888999999999999999999999999999998
Q ss_pred --ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+++++|+++. ....++|++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~ 112 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVG 112 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 7777887633 234688988875
No 50
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.88 E-value=7.2e-22 Score=120.20 Aligned_cols=102 Identities=53% Similarity=0.834 Sum_probs=87.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
..+||+++|+++||||||++++.++++...+.|+.+.++....+..++..+.+.+||++|++++..++..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 46899999999999999999999999888888999888888888888888899999999999999999999999998887
Q ss_pred ----ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 ----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+++.||+++. .....+|+++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~ 115 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVG 115 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 7788887743 122358888874
No 51
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.88 E-value=1e-21 Score=120.33 Aligned_cols=101 Identities=47% Similarity=0.821 Sum_probs=87.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccc-cchhhhhcCCcEEEE
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-TITSSYYRGAHGIIV 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~iv~ 86 (109)
.+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++++. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999999988889998888887888888888999999999999886 578999999999988
Q ss_pred ----ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 ----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
++++||+.+. ....++|+++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~ 116 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVG 116 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEE
Confidence 7788887743 123579999875
No 52
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.88 E-value=8.9e-22 Score=119.22 Aligned_cols=100 Identities=38% Similarity=0.651 Sum_probs=86.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|+++||||||++++.++++...+.++.+.++....+..++..+.+.+||++|++++..++..+++.++++++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 489999999999999999999999888888988888888888888878899999999999999999999999999998
Q ss_pred --ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++||+.+. ....++|++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~ 112 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVG 112 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 7777887743 222368999875
No 53
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.88 E-value=1e-21 Score=122.13 Aligned_cols=100 Identities=54% Similarity=0.879 Sum_probs=86.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999999988889999888877778888888999999999999999999999999999999
Q ss_pred --ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++||+++. ......|++++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~ 112 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVA 112 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 7888988743 123457877764
No 54
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.88 E-value=7.9e-22 Score=122.90 Aligned_cols=99 Identities=27% Similarity=0.447 Sum_probs=84.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
.||+++|++|||||||++++..+.|...+.|+.+.++. ..+..++..+.+.+||++|++++..++..+++.++++++
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999999989999876654 456677788999999999999999999999999999996
Q ss_pred --ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++||+++. ....++|+++|.
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvg 111 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVA 111 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 8888997643 223578998874
No 55
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.88 E-value=8.8e-22 Score=124.70 Aligned_cols=89 Identities=52% Similarity=0.842 Sum_probs=79.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEe-CCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
.+||+++|++|||||||++++.++++...+.++.+.++....+.+ ++..+.+++||++|++++..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999998888899888887777776 4567899999999999999999999999999988
Q ss_pred ----ecccchhhhc
Q 033918 87 ----GDLNSFLQQS 96 (109)
Q Consensus 87 ----~~~~s~~~~~ 96 (109)
++++||+++.
T Consensus 82 v~D~~~~~Sf~~l~ 95 (211)
T cd04111 82 VFDITNRESFEHVH 95 (211)
T ss_pred EEECCCHHHHHHHH
Confidence 7888988854
No 56
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.88 E-value=8.4e-22 Score=125.01 Aligned_cols=88 Identities=36% Similarity=0.648 Sum_probs=79.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCC-eEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
+||+++|++|||||||+++|..+.|...+.++.+.+++...+.+++ ..+.+.+||++|++.+..++..+++++|++++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999999999999888877777754 57899999999999999999999999999999
Q ss_pred ---ecccchhhhc
Q 033918 87 ---GDLNSFLQQS 96 (109)
Q Consensus 87 ---~~~~s~~~~~ 96 (109)
++++||+++.
T Consensus 81 ~D~t~~~s~~~~~ 93 (215)
T cd04109 81 YDVTNSQSFENLE 93 (215)
T ss_pred EECCCHHHHHHHH
Confidence 8888888754
No 57
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.88 E-value=8.9e-22 Score=122.15 Aligned_cols=99 Identities=28% Similarity=0.587 Sum_probs=83.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeC-CeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
+||+++|++|||||||++++.++.+...+.++.+.++. ..+... +..+.+.+||++|++++..+++.+++.+|++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 58999999999999999999999999889998876664 344554 667899999999999999999999999999998
Q ss_pred ---ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 ---GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++||+++. ....++|+++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 112 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVG 112 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 8888998753 123578998874
No 58
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.88 E-value=1.5e-21 Score=121.71 Aligned_cols=100 Identities=32% Similarity=0.599 Sum_probs=85.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-cccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
+||+++|++|||||||++++.++++.. .+.++.+.++....+.+++..+.+.+||++|++++..++..++..+|++++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999999874 688888877777788888888999999999999999999999999999998
Q ss_pred ---ecccchhhhc-------cCCCCCCEEEee
Q 033918 87 ---GDLNSFLQQS-------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~~-------~~~~~~P~i~v~ 108 (109)
+++.||+++. ....++|+++|.
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~ 112 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCG 112 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 7788886632 223478998875
No 59
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=6.2e-22 Score=117.28 Aligned_cols=92 Identities=55% Similarity=0.959 Sum_probs=85.0
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCc
Q 033918 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (109)
Q Consensus 3 ~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 82 (109)
.++.+.+||+++|..|||||+|.++|..+-|++....+.|.++.-+++.+++.++++++||+.|+++++.+.+.||+.|+
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEE----ecccchhh
Q 033918 83 GIIV----GDLNSFLQ 94 (109)
Q Consensus 83 ~iv~----~~~~s~~~ 94 (109)
++++ +...||+-
T Consensus 82 alilvydiscqpsfdc 97 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDC 97 (213)
T ss_pred eEEEEEecccCcchhh
Confidence 9998 55567754
No 60
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.1e-21 Score=115.73 Aligned_cols=102 Identities=53% Similarity=0.911 Sum_probs=91.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
+..+|++++|.+.||||||+.|+.+..|...+..|.|.++..+++.-..+.+++++||+.|+++++.+...|++.|++++
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 45789999999999999999999999999999999999999988877778899999999999999999999999999999
Q ss_pred E----ecccchhhhccC--------CCCCCEEEe
Q 033918 86 V----GDLNSFLQQSFS--------SSSTPFCLF 107 (109)
Q Consensus 86 ~----~~~~s~~~~~~~--------~~~~P~i~v 107 (109)
+ ++.+||..+.-+ -.++|+|+|
T Consensus 99 LmyDitNeeSf~svqdw~tqIktysw~naqvilv 132 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKTYSWDNAQVILV 132 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHheeeeccCceEEEE
Confidence 8 899999986522 147888876
No 61
>PLN03108 Rab family protein; Provisional
Probab=99.87 E-value=3.1e-21 Score=122.08 Aligned_cols=104 Identities=50% Similarity=0.851 Sum_probs=89.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
.++.+||+++|++|||||||++++..+++...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34679999999999999999999999999888888988888777888888888999999999999999999999999999
Q ss_pred EE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++ ++++||+++. .....+|++++.
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~ 118 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIG 118 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 98 7778887743 223578988875
No 62
>PLN00023 GTP-binding protein; Provisional
Probab=99.87 E-value=1.7e-21 Score=128.97 Aligned_cols=92 Identities=26% Similarity=0.464 Sum_probs=81.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeC-------------CeEEEEEEEeCCCccccc
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-------------GKTIKLQIWDTAGQERFR 71 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~D~~g~~~~~ 71 (109)
+...+||+++|+.+||||||++++.++.|...+.+|.+.++..+.+.++ ++.+.++|||++|+++++
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 3457999999999999999999999999999999999988776666654 246889999999999999
Q ss_pred cchhhhhcCCcEEEE----ecccchhhhc
Q 033918 72 TITSSYYRGAHGIIV----GDLNSFLQQS 96 (109)
Q Consensus 72 ~~~~~~~~~~~~iv~----~~~~s~~~~~ 96 (109)
.++..|++.++++|+ +++.||+++.
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~ 126 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQ 126 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHH
Confidence 999999999999998 8889998754
No 63
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=2.5e-21 Score=120.75 Aligned_cols=100 Identities=47% Similarity=0.928 Sum_probs=84.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
+||+++|++|||||||++++.++++. ..+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+|++++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999999885 4678888877776777888888999999999999999999999999999998
Q ss_pred ---ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 ---GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++||+++. .....+|+++|.
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~ 113 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLG 113 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 6777876533 122478998875
No 64
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.87 E-value=1.8e-21 Score=125.88 Aligned_cols=99 Identities=24% Similarity=0.433 Sum_probs=84.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|++|||||||++++.++.|...|.++.+ +++...+.+++..+.+.|||++|++.+..++..++..+|++++
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999888888886 5556777888888999999999999998888889999999888
Q ss_pred --ecccchhhhcc-----------------CCCCCCEEEee
Q 033918 87 --GDLNSFLQQSF-----------------SSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~~-----------------~~~~~P~i~v~ 108 (109)
++++||+++.. ...++|+|+|.
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivg 120 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICG 120 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEE
Confidence 88889987431 22478999875
No 65
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.87 E-value=4.5e-21 Score=116.29 Aligned_cols=100 Identities=59% Similarity=0.948 Sum_probs=86.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|++|+|||||++++.+.++...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|++++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 589999999999999999999999888888888888877788888888899999999999999999999999999998
Q ss_pred --ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+++.+|+.+. ....++|++++.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~ 112 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVG 112 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 6677887643 222578999875
No 66
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.87 E-value=2.4e-21 Score=120.74 Aligned_cols=98 Identities=29% Similarity=0.571 Sum_probs=82.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE---
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV--- 86 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~--- 86 (109)
||+++|++|||||||+++|..+.|...+.++.+..+. ....+++..+.+++||++|++++..++..+++.+|++++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 6899999999999999999999998888888875543 455677778899999999999999999999999999998
Q ss_pred -ecccchhhhcc--------C---CCCCCEEEee
Q 033918 87 -GDLNSFLQQSF--------S---SSSTPFCLFL 108 (109)
Q Consensus 87 -~~~~s~~~~~~--------~---~~~~P~i~v~ 108 (109)
++++||+++.. . ...+|+++|.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvg 113 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVG 113 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 77888877431 1 2468988874
No 67
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.87 E-value=4e-21 Score=116.73 Aligned_cols=99 Identities=33% Similarity=0.616 Sum_probs=82.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|++|||||||++++.++.+...+.++.+..+ ......++..+.+.+||++|++++..++..+++.++++++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999999888888776433 4566677778999999999999999999999999999887
Q ss_pred --ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+++++|+.+. .....+|+++|.
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~ 112 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVG 112 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 7777887643 122478998774
No 68
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.87 E-value=2.2e-21 Score=118.51 Aligned_cols=100 Identities=38% Similarity=0.733 Sum_probs=84.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|++|||||||++++.++.+...+.++.+.++....+.+.+..+.+.+||++|++.+..++..+++.+|++++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999999999999888888888877777777888888999999999999999999999999999998
Q ss_pred --ecccchhhhcc-------C-----CCCCCEEEee
Q 033918 87 --GDLNSFLQQSF-------S-----SSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~~-------~-----~~~~P~i~v~ 108 (109)
.++++|++... . ..++|+++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 116 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLG 116 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEE
Confidence 66677765421 1 1378998875
No 69
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.86 E-value=6.2e-21 Score=115.72 Aligned_cols=101 Identities=47% Similarity=0.731 Sum_probs=85.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
++||+++|++|+|||||+++++++++...+.++.+.++....+..++..+.+.+||++|++++...+..+++++|++++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999999887788888877777788888888999999999999999999999999999998
Q ss_pred ---ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 ---GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++.++|+... .....+|+++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~ 113 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVG 113 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 6677786633 222578888775
No 70
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.86 E-value=7.5e-21 Score=115.39 Aligned_cols=100 Identities=33% Similarity=0.565 Sum_probs=83.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
.+||+++|++|+|||||++++.++.+...+.++.+..+ .....+++..+.+.+||++|++++..++..+++.+|++++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 48999999999999999999999998888888876444 3455677778899999999999999999999999999998
Q ss_pred ---ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 ---GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+++.+|+.+. ....++|+++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~ 114 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVG 114 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEe
Confidence 7777887743 123578998875
No 71
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.86 E-value=3.5e-21 Score=121.06 Aligned_cols=95 Identities=25% Similarity=0.522 Sum_probs=84.4
Q ss_pred EcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE----ecc
Q 033918 14 IGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV----GDL 89 (109)
Q Consensus 14 iG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~----~~~ 89 (109)
+|+++||||||++++..+.|...+.++.+.++....+.+++..+.+.+||++|++++..++..|++.++++++ +++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 6999999999999999999988999999988888888888889999999999999999999999999999998 888
Q ss_pred cchhhhc-------cCCCCCCEEEee
Q 033918 90 NSFLQQS-------FSSSSTPFCLFL 108 (109)
Q Consensus 90 ~s~~~~~-------~~~~~~P~i~v~ 108 (109)
.||+++. ....++|++||.
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvg 106 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCG 106 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 8998753 223578999874
No 72
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.86 E-value=6.4e-21 Score=117.13 Aligned_cols=99 Identities=30% Similarity=0.483 Sum_probs=83.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+|++++|++|+|||||++++.++.|...+.++.. +.....+.+++..+.+++||++|++++..++..+++++|++++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 5899999999999999999999999998988864 4444567788888999999999999999999999999999998
Q ss_pred --ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++||+++. .....+|++++.
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~ 111 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVG 111 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 7888987752 122468888774
No 73
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.86 E-value=5.3e-21 Score=117.25 Aligned_cols=97 Identities=32% Similarity=0.638 Sum_probs=82.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE----
Q 033918 11 LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV---- 86 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~---- 86 (109)
|+++|++|||||||++++.++.+...+.++.+..+. ..+..++..+.+.+||++|++++..++..+++.+|++++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 589999999999999999999998888888765543 566778888999999999999999999999999999999
Q ss_pred ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++||+++. ....++|+++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~ 109 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVG 109 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 7888998753 223589999874
No 74
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.86 E-value=3.8e-22 Score=119.54 Aligned_cols=94 Identities=50% Similarity=0.841 Sum_probs=84.9
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEe-CCeEEEEEEEeCCCccccccchhhhhcCC
Q 033918 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRGA 81 (109)
Q Consensus 3 ~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (109)
+--.+.+++++||++-||||+|+++|..++|++-.+||.|.+++.+.+.+ ++..+++++||+.|+++++.+...||+++
T Consensus 3 pif~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrns 82 (213)
T KOG0091|consen 3 PIFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNS 82 (213)
T ss_pred cceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcc
Confidence 34457899999999999999999999999999999999999998877665 46689999999999999999999999999
Q ss_pred cEEEE----ecccchhhhc
Q 033918 82 HGIIV----GDLNSFLQQS 96 (109)
Q Consensus 82 ~~iv~----~~~~s~~~~~ 96 (109)
-++++ ++++||+.++
T Consensus 83 vgvllvyditnr~sfehv~ 101 (213)
T KOG0091|consen 83 VGVLLVYDITNRESFEHVE 101 (213)
T ss_pred cceEEEEeccchhhHHHHH
Confidence 88777 9999999865
No 75
>PLN03118 Rab family protein; Provisional
Probab=99.86 E-value=1.2e-20 Score=119.31 Aligned_cols=104 Identities=55% Similarity=0.825 Sum_probs=86.7
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
+....+||+++|++|||||||++++.++.+ ..+.++.+.++....+..++..+.+.+||++|++++..++..+++.+|+
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 445689999999999999999999999886 5678888877776777777778899999999999999999999999999
Q ss_pred EEE----ecccchhhhcc----------CCCCCCEEEee
Q 033918 84 IIV----GDLNSFLQQSF----------SSSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~~~~----------~~~~~P~i~v~ 108 (109)
+++ ++++||+++.. .....|+++|.
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~ 127 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVG 127 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 998 77888887541 12467887764
No 76
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.86 E-value=1e-20 Score=115.72 Aligned_cols=100 Identities=33% Similarity=0.582 Sum_probs=84.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+++||++|++++..++..+++.++++++
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 47999999999999999999999999888888887544 4667778888999999999999999999999999999987
Q ss_pred ---ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 ---GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+++++|+... .....+|++++.
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~ 113 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVG 113 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEE
Confidence 7777887743 223579998874
No 77
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.86 E-value=1.1e-20 Score=115.19 Aligned_cols=99 Identities=28% Similarity=0.460 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|++|||||||++++.+++|...+.|+.+..+ ...+..+...+.+.+||++|++++..++..++..++++++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999999888888876544 3455566678899999999999999999999999999888
Q ss_pred --ecccchhhhcc-----------CCCCCCEEEee
Q 033918 87 --GDLNSFLQQSF-----------SSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~~-----------~~~~~P~i~v~ 108 (109)
++++||+++.. ...++|+++|.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 115 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVG 115 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEE
Confidence 77888876431 12578999874
No 78
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.86 E-value=9.4e-21 Score=115.10 Aligned_cols=100 Identities=30% Similarity=0.531 Sum_probs=82.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC--CCCCcccccceeeEEEEEEEeC-CeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD--SYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
+||+++|++|||||||++++..+ .+.+.+.++.+.++....+.++ +..+++.+||++|++.+..++..++.++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6788999998887766666664 56799999999999999999999999999999
Q ss_pred E----ecccchhhhc-------cCCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS-------FSSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~-------~~~~~~P~i~v~ 108 (109)
+ ++++||+.+. ....++|+++|.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~ 114 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVG 114 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 9 7777886543 223468988875
No 79
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.85 E-value=2.7e-20 Score=118.04 Aligned_cols=106 Identities=28% Similarity=0.483 Sum_probs=90.3
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCc
Q 033918 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (109)
Q Consensus 3 ~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 82 (109)
.++...+|++++|++|||||||+++++.+.+...+.++.+.++....+..+++.+.+.+||++|++++..++..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 45667899999999999999999999999998999999998888777777888899999999999999999999999999
Q ss_pred EEEE----ecccchhhhc-------cCCCCCCEEEee
Q 033918 83 GIIV----GDLNSFLQQS-------FSSSSTPFCLFL 108 (109)
Q Consensus 83 ~iv~----~~~~s~~~~~-------~~~~~~P~i~v~ 108 (109)
++++ +++.||..+. ....++|++++.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~ 120 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVG 120 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 9887 7778887643 123578887764
No 80
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.85 E-value=2.6e-20 Score=112.88 Aligned_cols=100 Identities=56% Similarity=0.904 Sum_probs=84.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999998877788888877776667777778899999999999999999999999999999
Q ss_pred --ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+++.||+.+. ....+.|+++|.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~ 113 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVG 113 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEE
Confidence 7777877743 123578888764
No 81
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.85 E-value=1.6e-20 Score=115.26 Aligned_cols=99 Identities=31% Similarity=0.604 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
.||+++|++|||||||++++..+.+...+.|+.+..+. ..+.+++..+.+.+||++|++++...+..++.++|++++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 68999999999999999999999998888888875554 456777788999999999999999998889999999996
Q ss_pred --ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++||+++. ....++|+++|.
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 112 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVG 112 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 7777887753 122588998874
No 82
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.85 E-value=2.3e-20 Score=114.41 Aligned_cols=99 Identities=29% Similarity=0.531 Sum_probs=83.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|++|+|||||++++..+++...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|++++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999999888888876433 3456777888889999999999999999999999999998
Q ss_pred --ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++||+++. ....++|+++|.
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~ 111 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVG 111 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 7888887653 234689998874
No 83
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.85 E-value=1.7e-20 Score=117.84 Aligned_cols=100 Identities=21% Similarity=0.359 Sum_probs=80.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcccccc--------chhhhhcC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT--------ITSSYYRG 80 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~ 80 (109)
+||+++|++|||||||++++.+++|...+.|+.+.+++...+..++..+.+.+||++|.+.+.. ....+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888999887666656677788889999999998754321 13345789
Q ss_pred CcEEEE----ecccchhhhcc-----------CCCCCCEEEee
Q 033918 81 AHGIIV----GDLNSFLQQSF-----------SSSSTPFCLFL 108 (109)
Q Consensus 81 ~~~iv~----~~~~s~~~~~~-----------~~~~~P~i~v~ 108 (109)
+|++++ ++++||+.+.. ...++|+++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivg 123 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVG 123 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 999999 88889987531 14679999885
No 84
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.85 E-value=2.2e-20 Score=118.96 Aligned_cols=95 Identities=32% Similarity=0.614 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|+++||||||++++..++|.. +.++.+.++..... ..+.+.+||++|++++..++..+++.+|++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999865 57777765543322 46789999999999999999999999999998
Q ss_pred --ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++||+++. ....++|+++|.
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVg 107 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVG 107 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 8888998864 223578888874
No 85
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.84 E-value=5.8e-20 Score=111.73 Aligned_cols=93 Identities=27% Similarity=0.358 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|++|||||||++++..+.|.+.+.|+.+ .+ ...+.+++..+.+.+||++|++. ..+++.+|++++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 5899999999999999999999998887766543 33 46778888889999999999964 356778999888
Q ss_pred --ecccchhhhcc---------CCCCCCEEEee
Q 033918 87 --GDLNSFLQQSF---------SSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~~---------~~~~~P~i~v~ 108 (109)
++++||+++.. ...++|+++|.
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvg 106 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVG 106 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence 99999998541 22578988873
No 86
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.84 E-value=2.5e-21 Score=120.10 Aligned_cols=102 Identities=29% Similarity=0.540 Sum_probs=90.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeC-CeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
...+|++++|++++|||+++..+..+.|++.|.||.- +-++..+.++ ++.+.+.+||+.|++.|..+++-.|.++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3568999999999999999999999999999999986 4445677885 9999999999999999999999999999999
Q ss_pred EE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++ .+++||+++. ...+.+|+|||-
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVG 116 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVG 116 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEe
Confidence 87 8999999844 445789999873
No 87
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.84 E-value=6.8e-20 Score=110.71 Aligned_cols=100 Identities=38% Similarity=0.680 Sum_probs=82.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|++|+|||||++++.++.+...+.++.+..+....+...+..+.+.+||++|++.+..++..+++++|++++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999998877777777666666667777778899999999999999999999999999998
Q ss_pred --ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+++++|+.+. .....+|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~ 112 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVG 112 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 6777776542 122368888875
No 88
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.84 E-value=2.5e-20 Score=113.83 Aligned_cols=94 Identities=20% Similarity=0.412 Sum_probs=77.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE----
Q 033918 11 LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV---- 86 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~---- 86 (109)
|+++|++|||||||++++.++.+...+.|+.+.+. . .++...+++.+||++|+++++.+|..+++.+|++++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~--~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--V--AIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--E--EEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 79999999999999999999988888899887543 2 234456889999999999999999999999999999
Q ss_pred ecccchhhhc-------cCCCCCCEEEee
Q 033918 87 GDLNSFLQQS-------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ~~~~s~~~~~-------~~~~~~P~i~v~ 108 (109)
+++.+|+... ....++|+++|.
T Consensus 78 t~~~s~~~~~~~l~~~~~~~~~~piilv~ 106 (164)
T cd04162 78 ADSERLPLARQELHQLLQHPPDLPLVVLA 106 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 6666776532 223689999874
No 89
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.83 E-value=1.9e-19 Score=109.79 Aligned_cols=104 Identities=51% Similarity=0.841 Sum_probs=85.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
....+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..+|++
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 34569999999999999999999998888777888887777777778888888999999999999999989999999999
Q ss_pred EE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++ ++..+|+.+. .....+|+++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~ 119 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVG 119 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 99 5666775432 123468887764
No 90
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.83 E-value=3.4e-20 Score=112.68 Aligned_cols=95 Identities=25% Similarity=0.543 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|+++||||||++++..+.+. .+.|+.+.++. .+.. ..+.+.+||++|++++..+|..+++++|++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999888876 47788775543 3344 35789999999999999999999999999999
Q ss_pred --ecccchhhhcc---------CCCCCCEEEee
Q 033918 87 --GDLNSFLQQSF---------SSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~~---------~~~~~P~i~v~ 108 (109)
+++.+|+.... ...+.|++++.
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 108 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFA 108 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEE
Confidence 66777776431 11358888874
No 91
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.83 E-value=4.2e-20 Score=113.89 Aligned_cols=97 Identities=25% Similarity=0.504 Sum_probs=77.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
..+||+++|++|||||||++++..+++. .+.||.+.++. .+.. ..+.+.+||++|++++..+|..++++++++++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 4699999999999999999999888774 46788876554 2333 35789999999999999999999999999999
Q ss_pred ----ecccchhhhc--------c-CCCCCCEEEee
Q 033918 87 ----GDLNSFLQQS--------F-SSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~~~~~--------~-~~~~~P~i~v~ 108 (109)
+++++|+... . ...++|+++|.
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~ 121 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFA 121 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEE
Confidence 6677786632 1 12468988875
No 92
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.83 E-value=1.7e-19 Score=108.23 Aligned_cols=100 Identities=62% Similarity=1.014 Sum_probs=84.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|++++|||||++++.++++...+.++.+.++....+..++....+.+||++|+..+...+..+++++|++++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999999999888888888888887888887778899999999999999999999999999998
Q ss_pred --ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+++++++.+. ......|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 112 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVG 112 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 5556665533 112468888875
No 93
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.83 E-value=7.6e-20 Score=113.46 Aligned_cols=100 Identities=23% Similarity=0.491 Sum_probs=78.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEe-CCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
.+||+++|++|||||||++++..+.+... .|+.+.+.....+.. ++..+.+.+||++|++++..+|..+++.+|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 58999999999999999999998887654 677765555444443 3356889999999999999999999999999998
Q ss_pred ----ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 ----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
++..+|+... ....++|+++|+
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~ 116 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLA 116 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 5555665532 123478999875
No 94
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.83 E-value=5.1e-20 Score=114.23 Aligned_cols=97 Identities=26% Similarity=0.515 Sum_probs=77.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
..+||+++|+++||||||++++..+.+.. +.||.+.++. .+.. ..+.+.+||++|+++++.+|..+++.+|++++
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 46899999999999999999998888764 6778775543 3333 45789999999999999999999999999999
Q ss_pred ----ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 ----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+++++|+... ......|+++|.
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~ 125 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFA 125 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEE
Confidence 6677776633 112468888874
No 95
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.83 E-value=6.1e-20 Score=111.84 Aligned_cols=98 Identities=34% Similarity=0.480 Sum_probs=79.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccc-cccchhhhhcCCcEEEE--
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~iv~-- 86 (109)
||+++|++|||||||++++..+.+.+.+.++.+..+ ...+.+++..+.+++||++|++. ....+..+++.+|++++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999999988888888875444 35567788889999999999985 34567888999999998
Q ss_pred --ecccchhhhc-------cC---CCCCCEEEee
Q 033918 87 --GDLNSFLQQS-------FS---SSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~-------~~---~~~~P~i~v~ 108 (109)
++++||+++. .. ..++|+++|.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~ 113 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVG 113 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 7788888643 11 3479998875
No 96
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.83 E-value=3.1e-20 Score=116.34 Aligned_cols=101 Identities=33% Similarity=0.552 Sum_probs=91.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
..+||+++|.+|||||+|..+|..+.|.+.|.||.+ +.+.+.+.+++..+.+.|+|+.|++++..+...|+.+++++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999998 4555888999999999999999999999999999999999998
Q ss_pred ----ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 ----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+|+.||+.+. ....++|+++|-
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVG 115 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVG 115 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEE
Confidence 9999999854 334679999984
No 97
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.83 E-value=5.6e-20 Score=112.72 Aligned_cols=97 Identities=25% Similarity=0.540 Sum_probs=76.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
..+||+++|++|||||||++++..+.+. .+.|+.+.++. .+.. ..+.+.+||++|++++..+|..+++.+|++++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999988765 46777775543 3333 35789999999999999999999999999999
Q ss_pred ----ecccchhhhcc---------CCCCCCEEEee
Q 033918 87 ----GDLNSFLQQSF---------SSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~~~~~~---------~~~~~P~i~v~ 108 (109)
+++.+|++... ....+|++||.
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 117 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFA 117 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEE
Confidence 66677876431 12468988875
No 98
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.83 E-value=7.4e-20 Score=113.45 Aligned_cols=98 Identities=24% Similarity=0.534 Sum_probs=78.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
...+||+++|+++||||||++++..+.+. .+.|+.+.++. .+.. ..+.+.+||++|+++++.+|..+++++|+++
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34689999999999999999999988875 46788875543 3333 3578999999999999999999999999999
Q ss_pred E----ecccchhhhc--------c-CCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS--------F-SSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~--------~-~~~~~P~i~v~ 108 (109)
+ +++++|++.. . ...++|++++.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~ 125 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEE
Confidence 9 6777776532 1 12478998875
No 99
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.83 E-value=1.1e-19 Score=113.93 Aligned_cols=98 Identities=24% Similarity=0.445 Sum_probs=81.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE---
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV--- 86 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~--- 86 (109)
||+++|++|||||||++++..+.+...+.++.. +.....+.+.+..+.+++||++|+..+..++..++..+|++++
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999998888877765 3444566777777899999999999999999999999999999
Q ss_pred -ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 -GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 -~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+++.+|+.+. ....++|+++|.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 111 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVG 111 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 6777887642 122579999885
No 100
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.82 E-value=2.6e-19 Score=109.24 Aligned_cols=99 Identities=29% Similarity=0.598 Sum_probs=80.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|++|+|||||++++.++++...+.++....+ .......+..+.+++||++|++++...+..+++.+|++++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999998777777765433 3555667788999999999999888888888999999999
Q ss_pred --ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+++.||.... ....++|+++|.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~ 111 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVG 111 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 6667776532 233479998875
No 101
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.82 E-value=2.6e-19 Score=114.13 Aligned_cols=98 Identities=29% Similarity=0.376 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhc-CCcEEEE
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR-GAHGIIV 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~iv~ 86 (109)
+||+++|++|||||||++++..+.+. ..+.++.+.++....+.+++....+.+||++|++ ......++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 6777777656666778888888999999999998 334455666 8999988
Q ss_pred ----ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 ----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+++.||+++. ....++|+++|.
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~ 113 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVG 113 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 8888998643 112579999885
No 102
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.82 E-value=3.8e-19 Score=107.73 Aligned_cols=99 Identities=34% Similarity=0.639 Sum_probs=82.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|++|+|||||++++..+.+...+.++.+..+ ......++..+.+.+||++|++.+...+..+++.++++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999998888888776444 3566777788999999999999999999999999999888
Q ss_pred --ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+++.+|++.. ....++|+++|+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~ 112 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVG 112 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 6677776633 113589998875
No 103
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.81 E-value=3e-19 Score=109.03 Aligned_cols=98 Identities=20% Similarity=0.299 Sum_probs=76.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|++|||||||++++..+++...+.++.+ ++ .....+.+..+++.+||++|++++...+..++..+|++++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-EI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-ce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999999998776554433 22 2344556677899999999999888888888899999998
Q ss_pred --ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+++.||+.+. .....+|+++|.
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~ 110 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVG 110 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 6778887632 223478998875
No 104
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.81 E-value=5.6e-19 Score=110.73 Aligned_cols=99 Identities=22% Similarity=0.338 Sum_probs=73.7
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHHhC-----CCCCccccccee-eEEEEE--------EEeCCeEEEEEEEeCCCcccccc
Q 033918 8 LFKLLLIGDSGVGKSCLLL-RFADD-----SYIESYISTIGV-DFKIRT--------VEQDGKTIKLQIWDTAGQERFRT 72 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~-~~~~~-----~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~ 72 (109)
.+||+++|+++||||||+. ++.++ .|...+.||.+. +.+... ..+++..+.+.+||++|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4899999999999999995 55544 345677888752 222222 25678899999999999875 3
Q ss_pred chhhhhcCCcEEEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 73 ITSSYYRGAHGIIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 73 ~~~~~~~~~~~iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+...+++++|++++ +++.||+++. .....+|+++|.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvg 127 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVG 127 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 55678999999998 8899998763 123578988873
No 105
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.81 E-value=3.8e-19 Score=108.88 Aligned_cols=94 Identities=23% Similarity=0.412 Sum_probs=75.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE---
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV--- 86 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~--- 86 (109)
+|+++|+++||||||++++.++ +...+.|+.+.. ...+.. ....+++||++|+++++.+|..|++++|++++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999866 777888888854 334444 34778999999999999999999999999999
Q ss_pred -ecccchhhhc--------c-CCCCCCEEEee
Q 033918 87 -GDLNSFLQQS--------F-SSSSTPFCLFL 108 (109)
Q Consensus 87 -~~~~s~~~~~--------~-~~~~~P~i~v~ 108 (109)
+++.+|+... . ...+.|+++|+
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~ 107 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLA 107 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEE
Confidence 6667777632 1 12478999875
No 106
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.80 E-value=3.4e-19 Score=103.29 Aligned_cols=99 Identities=28% Similarity=0.467 Sum_probs=74.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC--CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYI--ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
||+++|++|||||||++++.++.+. ..+.+..+.++.............+.+||++|++.+...+..++..+|++++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 2233334444544455566666669999999999998888888999999999
Q ss_pred ---ecccchhhhc----------cCCCCCCEEEee
Q 033918 87 ---GDLNSFLQQS----------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~~----------~~~~~~P~i~v~ 108 (109)
++++||+++. ....++|+++|.
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~ 115 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVG 115 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEE
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEE
Confidence 8888888842 224579998874
No 107
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.80 E-value=1.1e-18 Score=107.64 Aligned_cols=99 Identities=32% Similarity=0.552 Sum_probs=81.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
.||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..++..++++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999998887888776444 3556677777889999999999999999999999999888
Q ss_pred --ecccchhhhcc---------CCCCCCEEEee
Q 033918 87 --GDLNSFLQQSF---------SSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~~---------~~~~~P~i~v~ 108 (109)
++..+|+.+.. ...++|++++.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 113 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVG 113 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 67777766431 23578988875
No 108
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.80 E-value=4.6e-20 Score=110.23 Aligned_cols=93 Identities=35% Similarity=0.707 Sum_probs=86.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
...+.||++++|+.=||||||.-|+..++|..++.+|.-..|.++.+.+.+....+.|||+.|+++|..+-+-||+.+++
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence 34578999999999999999999999999999988888778888999999999999999999999999999999999999
Q ss_pred EEE----ecccchhhhc
Q 033918 84 IIV----GDLNSFLQQS 96 (109)
Q Consensus 84 iv~----~~~~s~~~~~ 96 (109)
+++ +|++||++.+
T Consensus 89 alLVyDITDrdSFqKVK 105 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVK 105 (218)
T ss_pred eEEEEeccchHHHHHHH
Confidence 998 9999999965
No 109
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.80 E-value=5.2e-19 Score=108.35 Aligned_cols=94 Identities=24% Similarity=0.566 Sum_probs=74.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE---
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV--- 86 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~--- 86 (109)
||+++|+++||||||++++.++.+.. +.||.+.++. .+.. ..+.+.+||++|++++...|..+++.+|++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999887654 7778775553 3333 35788999999999999999999999999999
Q ss_pred -ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 -GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 -~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+++++|++.. ....+.|++++.
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 107 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFA 107 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEE
Confidence 6677786632 112357888874
No 110
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.79 E-value=1.1e-18 Score=107.76 Aligned_cols=99 Identities=32% Similarity=0.566 Sum_probs=78.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
..+.+||+++|++++||||+++++..+++ ....||.|. +...+.+.+ ..+.+||.+|+..++..|+.|+++++++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~-~~~~pT~g~--~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEI-SETIPTIGF--NIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSE-EEEEEESSE--EEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccc-cccCccccc--ccceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence 36789999999999999999999987764 447888884 445666654 6788999999999999999999999999
Q ss_pred EE----ecccchhhhc---------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+| +|++.+.... .....+|+++++
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~ 122 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILA 122 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEE
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEe
Confidence 99 5555554422 123578988775
No 111
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.79 E-value=5.8e-19 Score=105.71 Aligned_cols=100 Identities=21% Similarity=0.442 Sum_probs=80.1
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
..+++++|+++|.+|+|||++.++|.+.. .....|+.+++. +++.+ +.+++++||.+|+...+..|++||.++|+
T Consensus 12 ~kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~I--ktl~~--~~~~L~iwDvGGq~~lr~~W~nYfestdg 86 (185)
T KOG0073|consen 12 LKEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQI--KTLEY--KGYTLNIWDVGGQKTLRSYWKNYFESTDG 86 (185)
T ss_pred hhhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceee--EEEEe--cceEEEEEEcCCcchhHHHHHHhhhccCe
Confidence 35679999999999999999999998776 778889988444 45555 55889999999999999999999999999
Q ss_pred EEE----ecccchhhh---------ccCCCCCCEEEee
Q 033918 84 IIV----GDLNSFLQQ---------SFSSSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~~---------~~~~~~~P~i~v~ 108 (109)
+|+ +|+.+|+.- +++-...|++++.
T Consensus 87 lIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvla 124 (185)
T KOG0073|consen 87 LIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLA 124 (185)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEE
Confidence 999 777777661 1333456666654
No 112
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.79 E-value=5.1e-19 Score=107.13 Aligned_cols=95 Identities=20% Similarity=0.469 Sum_probs=73.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC-CCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS-YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+|+++|++|||||||++++.++. +...+.|+.+.... .+.. ....+.+||++|++++..+|..+++.+|++++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999999876 35677888874432 2232 45788999999999999999999999999999
Q ss_pred --ecccchhhhc-------c----CCCCCCEEEee
Q 033918 87 --GDLNSFLQQS-------F----SSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~-------~----~~~~~P~i~v~ 108 (109)
+++.+|+... . ...++|+++|+
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~ 111 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFA 111 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEE
Confidence 5566664321 1 23579999885
No 113
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.79 E-value=1.7e-18 Score=104.38 Aligned_cols=98 Identities=36% Similarity=0.590 Sum_probs=80.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE---
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV--- 86 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~--- 86 (109)
||+++|++|+|||||+++++.+.+...+.++.+ +........++..+.+++||++|++.+...+..+++.+|++++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999999888888888877 4555666777677899999999999999999999999999998
Q ss_pred -ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 -GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 -~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
++++++++.. ......|+++++
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~ 111 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVG 111 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 6667776632 112478888875
No 114
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.79 E-value=2.2e-18 Score=109.18 Aligned_cols=101 Identities=41% Similarity=0.658 Sum_probs=82.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
.+||+++|++|+|||||++++..+.+...+.++.+..+...........+++.+||++|+++++.++..|+..++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999999999999999999998877776666665557889999999999999999999999999999
Q ss_pred ---ecccchhh-hc-------cCC-CCCCEEEee
Q 033918 87 ---GDLNSFLQ-QS-------FSS-SSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~-~~-------~~~-~~~P~i~v~ 108 (109)
+++.++.. .+ ... ...|++++.
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~ 118 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVG 118 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEe
Confidence 44334433 11 222 368888874
No 115
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.78 E-value=1.8e-18 Score=106.21 Aligned_cols=99 Identities=20% Similarity=0.420 Sum_probs=76.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
.+..+||+++|++|+|||||++++.++.+ ..+.++.+... ..+..+ ...+.+||++|++.+..++..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 34578999999999999999999997754 45677776333 344454 46789999999999988999999999999
Q ss_pred EE----ecccchhhhc---------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
++ +++.+|+... ....++|+++|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~ 122 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILA 122 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 98 6666776532 123578999875
No 116
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.5e-18 Score=102.22 Aligned_cols=93 Identities=52% Similarity=0.965 Sum_probs=83.9
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
..++.+|.+++|+.|||||+|+++|..++|...-+-+.|.++..+.+.+.++++++++||+.|+++++...+.||+.+.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 56788999999999999999999999999988878889999999999999999999999999999999999999999988
Q ss_pred EEE----ecccchhhhc
Q 033918 84 IIV----GDLNSFLQQS 96 (109)
Q Consensus 84 iv~----~~~~s~~~~~ 96 (109)
.++ +.+.+++.+.
T Consensus 87 almvyditrrstynhls 103 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLS 103 (215)
T ss_pred eeEEEEehhhhhhhhHH
Confidence 887 6676666644
No 117
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=4.4e-19 Score=108.03 Aligned_cols=99 Identities=26% Similarity=0.569 Sum_probs=80.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
..++.+|+++|..++||||++.++..++.... .||.| ++.+.+.+ +.+++.+||.+|+++++.+|.+|+++++++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~y--kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEY--KNISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEE--cceEEEEEecCCCcccccchhhhccCCcEE
Confidence 34689999999999999999999998886554 99998 55566676 468899999999999999999999999999
Q ss_pred EE----ecccchhhhc--------cC-CCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS--------FS-SSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~--------~~-~~~~P~i~v~ 108 (109)
|| +|++.+.... .. ....|++++.
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~a 125 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFA 125 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEe
Confidence 99 7777776633 11 2467776653
No 118
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.78 E-value=7.1e-18 Score=104.90 Aligned_cols=99 Identities=30% Similarity=0.506 Sum_probs=80.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
.|++++|++|+|||||++++..+.+.+.+.++....+. ..+..++....+.+||++|++.+......++..++++++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 69999999999999999999988888877777665444 455667778889999999999888887788899999996
Q ss_pred --ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+++++|+++. ....++|+++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvg 112 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVG 112 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 7778888753 233579999874
No 119
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.77 E-value=1.4e-20 Score=114.42 Aligned_cols=105 Identities=33% Similarity=0.632 Sum_probs=92.4
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCc
Q 033918 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (109)
Q Consensus 3 ~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 82 (109)
.+.+.-+|++++|..+|||+|+++|++.+-|.+.|..+.+.++...++.+....+.+.+||++|++++..+...||+.|.
T Consensus 15 ~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaq 94 (246)
T KOG4252|consen 15 TDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQ 94 (246)
T ss_pred hhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcccc
Confidence 35667899999999999999999999999999999999999998888888777788889999999999999999999887
Q ss_pred EEEE----ecccchhhhc-------cCCCCCCEEEe
Q 033918 83 GIIV----GDLNSFLQQS-------FSSSSTPFCLF 107 (109)
Q Consensus 83 ~iv~----~~~~s~~~~~-------~~~~~~P~i~v 107 (109)
+.++ +|+.||+... .....||.++|
T Consensus 95 a~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~v 130 (246)
T KOG4252|consen 95 ASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFV 130 (246)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEe
Confidence 7666 9999999854 33468998876
No 120
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.77 E-value=5.9e-20 Score=107.11 Aligned_cols=84 Identities=49% Similarity=0.963 Sum_probs=77.9
Q ss_pred EEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE----e
Q 033918 13 LIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV----G 87 (109)
Q Consensus 13 liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~----~ 87 (109)
++|++++|||+|+.|+..+.|. ....++.|+++.++.++.+++++++++||+.||++++.....||++||+.++ +
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 7899999999999999988874 5668899999999999999999999999999999999999999999999998 8
Q ss_pred cccchhhhc
Q 033918 88 DLNSFLQQS 96 (109)
Q Consensus 88 ~~~s~~~~~ 96 (109)
++.||++..
T Consensus 82 nkasfdn~~ 90 (192)
T KOG0083|consen 82 NKASFDNCQ 90 (192)
T ss_pred cchhHHHHH
Confidence 999999843
No 121
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.77 E-value=4.6e-18 Score=102.89 Aligned_cols=95 Identities=26% Similarity=0.540 Sum_probs=73.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE---
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV--- 86 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~--- 86 (109)
||+++|++|||||||++++.++++.. +.|+.+.++. .+... ..+.+.+||++|++.+...|..++..+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999998754 4677664433 33333 45789999999999999999999999999998
Q ss_pred -ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 -GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 -~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+++.+|.... ....+.|+++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 108 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLA 108 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEE
Confidence 5555565532 112578999886
No 122
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.77 E-value=5e-18 Score=104.47 Aligned_cols=97 Identities=21% Similarity=0.424 Sum_probs=75.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
..+||+++|++|+|||||++++..+++.. +.|+.+.++. .+..+ ...+.+||++|++++...|..+++.+|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 36899999999999999999999888765 5677775443 33343 4778999999999999999999999999999
Q ss_pred ----ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 ----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+++++|.... ....++|+++++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~ 123 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLA 123 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEE
Confidence 6666665421 112468988875
No 123
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=4.3e-20 Score=110.42 Aligned_cols=105 Identities=42% Similarity=0.836 Sum_probs=89.7
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeC---------CeEEEEEEEeCCCccccccc
Q 033918 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD---------GKTIKLQIWDTAGQERFRTI 73 (109)
Q Consensus 3 ~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~g~~~~~~~ 73 (109)
.++++.+|++.+|++|||||+++.++..++|......|.|+++..+.+-++ +..+.+++||+.|+++++.+
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 466788999999999999999999999999999999999999987766553 23688999999999999999
Q ss_pred hhhhhcCCcEEEE----ecccchhhhc--------cCCCCCCEEEe
Q 033918 74 TSSYYRGAHGIIV----GDLNSFLQQS--------FSSSSTPFCLF 107 (109)
Q Consensus 74 ~~~~~~~~~~iv~----~~~~s~~~~~--------~~~~~~P~i~v 107 (109)
...++++|=++++ ++.+||.+.. ..-++-|-|++
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivl 129 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVL 129 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEE
Confidence 9999999988887 8899998854 33456676654
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.75 E-value=9.3e-18 Score=104.22 Aligned_cols=98 Identities=21% Similarity=0.344 Sum_probs=74.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
+..+||+++|++|+|||||++++.++++. .+.|+.+... ..+..+ .+++.+||++|++.++..|..++.++++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 55799999999999999999999988754 3556655432 333343 467899999999999999999999999999
Q ss_pred E----ecccchhhhc---------cCCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+ +++.+|+... ....++|+++|+
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~ 125 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILG 125 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEE
Confidence 9 5566665532 112578999885
No 125
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.75 E-value=5e-18 Score=102.80 Aligned_cols=94 Identities=28% Similarity=0.493 Sum_probs=71.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE---
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV--- 86 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~--- 86 (109)
||+++|++++|||||++++..+.+. .+.|+.+.++. .+.. ...++.+||++|++.+..+|..++..++++++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 6899999999999999999887765 45677665443 3333 34778999999999999999999999999998
Q ss_pred -ecccchhhh--------c-cCCCCCCEEEee
Q 033918 87 -GDLNSFLQQ--------S-FSSSSTPFCLFL 108 (109)
Q Consensus 87 -~~~~s~~~~--------~-~~~~~~P~i~v~ 108 (109)
+++.++... . ....+.|+++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~ 107 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFA 107 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEE
Confidence 554555421 1 122478999986
No 126
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.74 E-value=2.2e-17 Score=99.04 Aligned_cols=95 Identities=27% Similarity=0.530 Sum_probs=75.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE---
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV--- 86 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~--- 86 (109)
.|+++|++|+|||||++++.+.++...+.|+.+.++. ..... .+.+.+||++|++++...+..++..+|++++
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3789999999999999999999999999998886554 33333 3779999999999999999999999999888
Q ss_pred -ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 -GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 -~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
++..+|.... ....++|+++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~ 108 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLG 108 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEE
Confidence 4555665421 112578988875
No 127
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.1e-17 Score=98.14 Aligned_cols=84 Identities=29% Similarity=0.638 Sum_probs=71.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
.++++|+++|..++||||++..+..+. +....||.| |+.+++++ +.+.+.+||.+|+++.+++|++||..+.++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvG--FnvetVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCC-Ccccccccc--eeEEEEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 358999999999999999999998877 677789998 56667777 5688999999999999999999999999999
Q ss_pred E----ecccchhh
Q 033918 86 V----GDLNSFLQ 94 (109)
Q Consensus 86 ~----~~~~s~~~ 94 (109)
| .+++..++
T Consensus 90 FV~Dsa~~dr~ee 102 (180)
T KOG0071|consen 90 FVVDSADRDRIEE 102 (180)
T ss_pred EEEeccchhhHHH
Confidence 9 44444444
No 128
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.74 E-value=3.4e-17 Score=101.82 Aligned_cols=98 Identities=23% Similarity=0.408 Sum_probs=75.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
.+..||+++|++|||||||++++.++++ ..+.++.+... ..+.+++ ..+.+||++|++++...|..+++.+++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~-~~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRL-AQHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC-cccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 4578999999999999999999998876 45677766433 3455543 67889999999999899999999999999
Q ss_pred E----ecccchhhhc---------cCCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+ ++.++|+... ....+.|++++.
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~ 127 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILG 127 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEE
Confidence 8 5666665421 112568999875
No 129
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.73 E-value=3.1e-17 Score=99.15 Aligned_cols=94 Identities=28% Similarity=0.599 Sum_probs=73.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE---
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV--- 86 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~--- 86 (109)
||+++|.+|||||||++++.++. ...+.++.+.+.. .+.+. ...+.+||++|++.+...+..++..+|++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999887 4556777764443 33443 4679999999999999999999999999999
Q ss_pred -ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 -GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 -~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+++++|.... ......|+++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~ 107 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFA 107 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEe
Confidence 5555666532 113578999885
No 130
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.72 E-value=4.4e-17 Score=99.20 Aligned_cols=95 Identities=25% Similarity=0.480 Sum_probs=69.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC------CCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSY------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
+|+++|++|+|||||++++..... ...+.++.+.++. .+.++ ...+.+||++|++.+..++..++..+++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999875422 2344556654443 34443 4678999999999999999999999999
Q ss_pred EEE----ecccchhhhc-------c--CCCCCCEEEee
Q 033918 84 IIV----GDLNSFLQQS-------F--SSSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~~~-------~--~~~~~P~i~v~ 108 (109)
+++ +++++++... . ...++|+++++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 114 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILA 114 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 998 4445555422 1 12579999875
No 131
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.72 E-value=4e-17 Score=96.02 Aligned_cols=100 Identities=30% Similarity=0.529 Sum_probs=82.3
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
....++|+.++|..++|||||++++.+.. +....||.| |+.+.+.+++ .+.+.+||.+|+...+..|..||.+.|+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~ 88 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDG 88 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCC-hhhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccce
Confidence 34678999999999999999999998766 566678888 5666777765 5889999999999999999999999999
Q ss_pred EEE----ecccchhhhc---------cCCCCCCEEEe
Q 033918 84 IIV----GDLNSFLQQS---------FSSSSTPFCLF 107 (109)
Q Consensus 84 iv~----~~~~s~~~~~---------~~~~~~P~i~v 107 (109)
+++ +|+..|+.+. ....++|+.+.
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIf 125 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIF 125 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeeh
Confidence 999 7777887743 33457887764
No 132
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.71 E-value=3.4e-16 Score=93.43 Aligned_cols=79 Identities=37% Similarity=0.653 Sum_probs=68.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
.+||+++|.+|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|+..+..++..+++.++.++.
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLR 79 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEE
Confidence 3799999999999999999999998877888888877776667777766889999999999998888888888888887
No 133
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.68 E-value=5.7e-17 Score=96.75 Aligned_cols=102 Identities=25% Similarity=0.505 Sum_probs=90.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
+.-.+||-++|++.+|||||+..+.++.+.+.+..+.|.++..+++.+.+..+.+.+||.+|++++..+.+....++-++
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence 44589999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred EE----ecccchhhhc--------cCCCCCCEEE
Q 033918 85 IV----GDLNSFLQQS--------FSSSSTPFCL 106 (109)
Q Consensus 85 v~----~~~~s~~~~~--------~~~~~~P~i~ 106 (109)
+| +.++++..+. .....+|+++
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilv 130 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILV 130 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhccCCccceEEe
Confidence 88 7777777654 4456888875
No 134
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.67 E-value=4e-16 Score=95.99 Aligned_cols=99 Identities=20% Similarity=0.238 Sum_probs=67.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC-------CCCccccc------ceeeEEEEEEEe-----CCeEEEEEEEeCCCccccc
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS-------YIESYIST------IGVDFKIRTVEQ-----DGKTIKLQIWDTAGQERFR 71 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~-------~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~~i~D~~g~~~~~ 71 (109)
+|+++|.+++|||||++++++.. +...+.++ .+.++....... ++..+.+.+||++|++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 22223222 233333322222 5567889999999999999
Q ss_pred cchhhhhcCCcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 72 TITSSYYRGAHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 72 ~~~~~~~~~~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
..+..++..+|++++ ++..+++... ....++|+++|+
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~ 126 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVI 126 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEE
Confidence 999999999999998 3333333221 123578888875
No 135
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.66 E-value=1.1e-15 Score=96.44 Aligned_cols=98 Identities=19% Similarity=0.334 Sum_probs=69.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCC-cEEEE-e
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA-HGIIV-G 87 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-~~iv~-~ 87 (109)
+|+++|++++|||||++++..+++...+.++ ..+.........+....+.+||++|+.+++..+..+++.+ +++|+ .
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999999877666554 2222221221113356789999999999999889999998 99999 3
Q ss_pred cc----cchhhh-----------ccCCCCCCEEEee
Q 033918 88 DL----NSFLQQ-----------SFSSSSTPFCLFL 108 (109)
Q Consensus 88 ~~----~s~~~~-----------~~~~~~~P~i~v~ 108 (109)
|. .++... ......+|++++.
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~ 116 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIAC 116 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEe
Confidence 32 233221 1123589999875
No 136
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.66 E-value=1.8e-15 Score=92.58 Aligned_cols=98 Identities=24% Similarity=0.472 Sum_probs=72.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
...+||+++|++|+|||||++++.+..+. .+.++.+.+. ..+..++ ..+.+||++|+.++...+..+++.+++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 44799999999999999999999987643 4566666433 3444443 56889999999888888999999999888
Q ss_pred E----ecccchhhhc---------cCCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+ ++..+|.... .....+|+++++
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 122 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFA 122 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 8 4445564422 112468988875
No 137
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.65 E-value=1e-15 Score=93.08 Aligned_cols=99 Identities=18% Similarity=0.199 Sum_probs=68.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeC-CeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
.|+++|++|+|||||++++..+++...+.+....+.....+..+ .....+.+||++|++.+...+..++..+|++++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999888765433333322322233332 124678999999999888888889999999998
Q ss_pred --ec---ccchhhhc-cCCCCCCEEEee
Q 033918 87 --GD---LNSFLQQS-FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~---~~s~~~~~-~~~~~~P~i~v~ 108 (109)
++ .++++.+. ....++|+++|+
T Consensus 82 d~~~~~~~~~~~~~~~~~~~~~p~ivv~ 109 (168)
T cd01887 82 AADDGVMPQTIEAIKLAKAANVPFIVAL 109 (168)
T ss_pred ECCCCccHHHHHHHHHHHHcCCCEEEEE
Confidence 22 22333222 123578988875
No 138
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.64 E-value=4.6e-16 Score=97.25 Aligned_cols=100 Identities=16% Similarity=0.187 Sum_probs=69.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh--CCCCCcc------------cccceeeEEEEEEEeCCeEEEEEEEeCCCccccccch
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD--DSYIESY------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT 74 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 74 (109)
.+|+++|.+++|||||+++++. +.+...+ .++.+.++......+......+.+||++|++++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999997 5554432 1233444444444444456789999999999999999
Q ss_pred hhhhcCCcEEEE-eccc--chhh----hc-cCCCCCCEEEee
Q 033918 75 SSYYRGAHGIIV-GDLN--SFLQ----QS-FSSSSTPFCLFL 108 (109)
Q Consensus 75 ~~~~~~~~~iv~-~~~~--s~~~----~~-~~~~~~P~i~v~ 108 (109)
..+++.+|++++ .|.. .+.. +. .....+|+++++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~ 124 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVI 124 (194)
T ss_pred HHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEE
Confidence 999999999988 2211 1111 11 123578988875
No 139
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.64 E-value=1.2e-15 Score=92.27 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=53.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC---CCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD---SYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
.|+++|++|||||||++++.+. .+...+.++...+.....+...+ ...+.+||++|++++......++..+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 5899999999999999999863 23333223222223223334431 3578999999999887766777889999998
No 140
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.62 E-value=3.1e-16 Score=92.79 Aligned_cols=83 Identities=30% Similarity=0.599 Sum_probs=71.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
++.+.++|..++|||||.+....+.+.+...|+.|++.+ .+ ....+.+.+||.+|+.+++.+|..|++.++++++
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr--k~--tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE--Ee--ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 678999999999999999999999999999999995554 33 3356889999999999999999999999999999
Q ss_pred ---ecccchhh
Q 033918 87 ---GDLNSFLQ 94 (109)
Q Consensus 87 ---~~~~s~~~ 94 (109)
.|++.++.
T Consensus 96 VDaad~~k~~~ 106 (186)
T KOG0075|consen 96 VDAADPDKLEA 106 (186)
T ss_pred eecCCcccchh
Confidence 55555544
No 141
>PRK04213 GTP-binding protein; Provisional
Probab=99.62 E-value=3.8e-15 Score=93.41 Aligned_cols=82 Identities=21% Similarity=0.243 Sum_probs=56.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCC-----------ccccccc
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG-----------QERFRTI 73 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~ 73 (109)
+...++|+++|.+|||||||++++.+..+...+.+... +....+... .+.+||++| +++++..
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHH
Confidence 34578999999999999999999998876554555333 333333332 488999999 5667766
Q ss_pred hhhhhc-C---CcEEEE-ecccch
Q 033918 74 TSSYYR-G---AHGIIV-GDLNSF 92 (109)
Q Consensus 74 ~~~~~~-~---~~~iv~-~~~~s~ 92 (109)
+..++. . ++++++ .|+.++
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~ 103 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSF 103 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccc
Confidence 666664 2 356666 555554
No 142
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.62 E-value=6.2e-15 Score=87.90 Aligned_cols=102 Identities=23% Similarity=0.362 Sum_probs=79.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCC--CcccccceeeEEEEEEEeC-CeEEEEEEEeCCCcccc-ccchhhhhcCC
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI--ESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERF-RTITSSYYRGA 81 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~-~~~~~~~~~~~ 81 (109)
.+.+||+++|.-+||||+++.++..++.. ..+.||.+.-|. ..+..+ +..-.+.++||.|-... .++.++|++.+
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~-~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYV-ASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhee-EeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 35789999999999999999999877653 466778775443 444443 34567899999997766 57889999999
Q ss_pred cEEEE----ecccchhhhc---------cCCCCCCEEEee
Q 033918 82 HGIIV----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 82 ~~iv~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
|++++ .|++||+..+ ...+++||+++.
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLa 125 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLA 125 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEe
Confidence 99999 8889998854 445799998864
No 143
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=9e-15 Score=89.77 Aligned_cols=100 Identities=27% Similarity=0.528 Sum_probs=80.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
-.+|++++|+.|.|||++.++...++|...|.++.|.+.+......+...+++..||+.|++.+..+...||=.+.+.++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 48999999999999999999999999999999999998887776666668999999999999999888888766655553
Q ss_pred ----ecccchhhhc-------cCCCCCCEEE
Q 033918 87 ----GDLNSFLQQS-------FSSSSTPFCL 106 (109)
Q Consensus 87 ----~~~~s~~~~~-------~~~~~~P~i~ 106 (109)
+.+-.+.+.. ....+|||++
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~ 119 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRENIPIVL 119 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhcCCCeee
Confidence 5444444432 2235688876
No 144
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.57 E-value=6.2e-15 Score=87.72 Aligned_cols=84 Identities=23% Similarity=0.338 Sum_probs=56.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcc-----ccccchhhhhcCCcEE
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE-----RFRTITSSYYRGAHGI 84 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~~~i 84 (109)
||+++|++|||||||++++.++.+ .+.++.+.++. -.+||++|+. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~------------~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYN------------DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEc------------CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 899999999999999999987764 33444332221 1589999972 2333333 47899999
Q ss_pred EE----ecccchhhhccCC-CCCCEEEee
Q 033918 85 IV----GDLNSFLQQSFSS-SSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~~~~-~~~P~i~v~ 108 (109)
++ +++.++....... ...|+++|+
T Consensus 67 ilv~d~~~~~s~~~~~~~~~~~~p~ilv~ 95 (142)
T TIGR02528 67 ALVQSATDPESRFPPGFASIFVKPVIGLV 95 (142)
T ss_pred EEEecCCCCCcCCChhHHHhccCCeEEEE
Confidence 98 6777775532111 134888775
No 145
>PRK15494 era GTPase Era; Provisional
Probab=99.57 E-value=2e-14 Score=96.80 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=63.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccce--eeEEEEEEEeCCeEEEEEEEeCCCccc-cccch-------h
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIG--VDFKIRTVEQDGKTIKLQIWDTAGQER-FRTIT-------S 75 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~-------~ 75 (109)
++.++|+++|.+|||||||++++.+.++.. +.+..+ .+.....+..++ .++.+|||+|..+ +..+. .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i-vs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI-VTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceee-ccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 456799999999999999999999887642 112111 122333445544 4678999999843 22221 2
Q ss_pred hhhcCCcEEEE--ecccchhhhc------cCCCCCCEEEee
Q 033918 76 SYYRGAHGIIV--GDLNSFLQQS------FSSSSTPFCLFL 108 (109)
Q Consensus 76 ~~~~~~~~iv~--~~~~s~~~~~------~~~~~~P~i~v~ 108 (109)
.++.+||++++ .+..+|.... ....+.|.++|+
T Consensus 127 ~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlVi 167 (339)
T PRK15494 127 SSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLL 167 (339)
T ss_pred HHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 34678999999 4445565532 122456777664
No 146
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.55 E-value=5.7e-14 Score=82.90 Aligned_cols=95 Identities=51% Similarity=0.834 Sum_probs=72.7
Q ss_pred EEcCCCCCHHHHHHHHHhCCC-CCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE----e
Q 033918 13 LIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV----G 87 (109)
Q Consensus 13 liG~~~vGKtsl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~----~ 87 (109)
++|++|+|||||++++.+... .....++. .++.............+.+||++|+..+...+..+++.++++++ +
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998876 45555555 56666666666667889999999998888888888999999988 4
Q ss_pred cccchhhh---------ccCCCCCCEEEee
Q 033918 88 DLNSFLQQ---------SFSSSSTPFCLFL 108 (109)
Q Consensus 88 ~~~s~~~~---------~~~~~~~P~i~v~ 108 (109)
+..+++.. .....+.|+++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~ 109 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVG 109 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEE
Confidence 44444432 2345688998875
No 147
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.55 E-value=5.5e-14 Score=100.23 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=74.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
+..+|+++|..++|||||++++.+.++...+.+....+.....+..++. ..+.|||++||+.|..++..++..+|++++
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 5679999999999999999999988876655444433333334444332 268899999999999999999999999998
Q ss_pred ----e---cccchhhhcc-CCCCCCEEEee
Q 033918 87 ----G---DLNSFLQQSF-SSSSTPFCLFL 108 (109)
Q Consensus 87 ----~---~~~s~~~~~~-~~~~~P~i~v~ 108 (109)
+ .+++++.+.. ...++|+++++
T Consensus 165 VVda~dgv~~qT~e~i~~~~~~~vPiIVvi 194 (587)
T TIGR00487 165 VVAADDGVMPQTIEAISHAKAANVPIIVAI 194 (587)
T ss_pred EEECCCCCCHhHHHHHHHHHHcCCCEEEEE
Confidence 2 2345555443 23578988875
No 148
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.54 E-value=9.1e-14 Score=85.90 Aligned_cols=102 Identities=19% Similarity=0.263 Sum_probs=62.5
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcc----------ccccc
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----------RFRTI 73 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~ 73 (109)
......+|+++|++|+|||||++++.+.++...+.++.+.+........++ .+.+||++|.. .+..+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 346688999999999999999999998875555555554333322233332 58899999953 23333
Q ss_pred hhhhhcC---CcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 74 TSSYYRG---AHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 74 ~~~~~~~---~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
...+++. ++++++ +++-+..... ....+.|+++++
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~ 136 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVL 136 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 4455554 466776 2211222211 123578888775
No 149
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.54 E-value=9.5e-14 Score=87.30 Aligned_cols=101 Identities=20% Similarity=0.187 Sum_probs=61.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccc---------cccchhh
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER---------FRTITSS 76 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~ 76 (109)
+..++|+++|++|||||||++++.+..+.....+....+.....+.+.+. ..+.+||++|... +...+ .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 34689999999999999999999987643222221122223233344332 3688999999732 11111 2
Q ss_pred hhcCCcEEEE----ecccchhhh-------c-cCCCCCCEEEee
Q 033918 77 YYRGAHGIIV----GDLNSFLQQ-------S-FSSSSTPFCLFL 108 (109)
Q Consensus 77 ~~~~~~~iv~----~~~~s~~~~-------~-~~~~~~P~i~v~ 108 (109)
.+..+|++++ +++.++... . .....+|+++|+
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~ 160 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVL 160 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEE
Confidence 3567888887 455555432 1 122468888875
No 150
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.52 E-value=1.1e-13 Score=96.75 Aligned_cols=99 Identities=20% Similarity=0.212 Sum_probs=65.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccc--------cccchhhhh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSSYY 78 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~ 78 (109)
..+|+++|.+|||||||++++.++... ....+....+.....+..++ ..+.+||++|.+. +...+..++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 368999999999999999999987642 22233333333434444544 3578999999752 334456788
Q ss_pred cCCcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 79 RGAHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 79 ~~~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
..||++++ ++..++.... ....+.|+++|+
T Consensus 116 ~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~ 153 (472)
T PRK03003 116 RTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAA 153 (472)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 89999999 4433432211 123579999986
No 151
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.52 E-value=3.1e-13 Score=93.79 Aligned_cols=99 Identities=25% Similarity=0.299 Sum_probs=67.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCC--CCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccc--------hhh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSY--IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSS 76 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~ 76 (109)
..+||+++|++|||||||++++.+... ...+ +....++....+.+++ ..+.+||++|...+... ...
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~-pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDI-KGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 468999999999999999999998653 2333 3334455556666765 45689999998554322 246
Q ss_pred hhcCCcEEEE----ecccchhhh--c-cCCCCCCEEEee
Q 033918 77 YYRGAHGIIV----GDLNSFLQQ--S-FSSSSTPFCLFL 108 (109)
Q Consensus 77 ~~~~~~~iv~----~~~~s~~~~--~-~~~~~~P~i~v~ 108 (109)
+++.+|++++ +++.+++.. . ....+.|+++|+
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~ 317 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVL 317 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEE
Confidence 7889999998 555555431 1 122468988875
No 152
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.51 E-value=1.6e-13 Score=82.62 Aligned_cols=94 Identities=17% Similarity=0.245 Sum_probs=61.4
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcccccc------chhhhhc--CCcEE
Q 033918 13 LIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT------ITSSYYR--GAHGI 84 (109)
Q Consensus 13 liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~--~~~~i 84 (109)
++|.+|||||||++++.+..+.....+....+.....+.+++ ..+.+||++|+..+.. ++..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998765443334333344445556654 4689999999876654 3566664 89998
Q ss_pred EE-ecccchhh---hc--cCCCCCCEEEee
Q 033918 85 IV-GDLNSFLQ---QS--FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~-~~~~s~~~---~~--~~~~~~P~i~v~ 108 (109)
++ .|..+.+. .. ....++|+++++
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~iiv~ 108 (158)
T cd01879 79 VNVVDATNLERNLYLTLQLLELGLPVVVAL 108 (158)
T ss_pred EEEeeCCcchhHHHHHHHHHHcCCCEEEEE
Confidence 88 22222221 11 122478988875
No 153
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.50 E-value=2e-13 Score=92.30 Aligned_cols=100 Identities=19% Similarity=0.155 Sum_probs=64.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCc---------cccccchhhh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ---------ERFRTITSSY 77 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~---------~~~~~~~~~~ 77 (109)
..++|+++|.+|+|||||++++.+.++.....+....+.....+.+.+. ..+.+|||+|. +.++..+ ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 3489999999999999999999987653222222222344455666432 46889999997 2232222 34
Q ss_pred hcCCcEEEE----ecccchhhhc-------c-CCCCCCEEEee
Q 033918 78 YRGAHGIIV----GDLNSFLQQS-------F-SSSSTPFCLFL 108 (109)
Q Consensus 78 ~~~~~~iv~----~~~~s~~~~~-------~-~~~~~P~i~v~ 108 (109)
+.+||++++ +++.+++... . ...+.|+++|+
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~ 308 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVY 308 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEE
Confidence 778999988 5555554421 1 22478988875
No 154
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.50 E-value=2.3e-13 Score=82.88 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=56.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcc----ccccchhhhh---cCCc
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----RFRTITSSYY---RGAH 82 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~---~~~~ 82 (109)
+|+++|.+|+|||||++++.+.+......+....+.....+...+ ...+.+||++|.. ..+.+...++ ..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 589999999999999999987553111111111111111223332 2468999999963 2223344443 4589
Q ss_pred EEEE----ecc-cchhhhc-------cC---CCCCCEEEee
Q 033918 83 GIIV----GDL-NSFLQQS-------FS---SSSTPFCLFL 108 (109)
Q Consensus 83 ~iv~----~~~-~s~~~~~-------~~---~~~~P~i~v~ 108 (109)
++++ +++ ++++... .. ....|+++|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~ 121 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVL 121 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEE
Confidence 9888 555 4555422 11 1368888875
No 155
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.50 E-value=1.1e-13 Score=85.44 Aligned_cols=97 Identities=18% Similarity=0.122 Sum_probs=64.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccc----------------eeeEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTI----------------GVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI 73 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 73 (109)
+|+++|.+|+|||||++++.+........... ........... ....+.+||++|+..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW--PDRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee--CCEEEEEEeCCCcHHHHHH
Confidence 48999999999999999999877654332211 11111122222 3467899999999888888
Q ss_pred hhhhhcCCcEEEE-ec---ccchhh---hc-cCCCCCCEEEee
Q 033918 74 TSSYYRGAHGIIV-GD---LNSFLQ---QS-FSSSSTPFCLFL 108 (109)
Q Consensus 74 ~~~~~~~~~~iv~-~~---~~s~~~---~~-~~~~~~P~i~v~ 108 (109)
+..+++.+|++++ .| ..+... +. ....+.|+++++
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~ 121 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAI 121 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 8999999999999 22 112211 11 112578988876
No 156
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.49 E-value=2.4e-13 Score=98.69 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=72.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccce--eeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIG--VDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
....|+++|..++|||||++++....+.....+... ...+...+..++....+.|||++|++.|..++..++..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 567999999999999999999998776543332222 122222333333457899999999999999999999999999
Q ss_pred EE----ec---ccchhhhcc-CCCCCCEEEee
Q 033918 85 IV----GD---LNSFLQQSF-SSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~---~~s~~~~~~-~~~~~P~i~v~ 108 (109)
++ ++ +++++.+.. ...++|+|+++
T Consensus 323 ILVVDA~dGv~~QT~E~I~~~k~~~iPiIVVi 354 (742)
T CHL00189 323 ILIIAADDGVKPQTIEAINYIQAANVPIIVAI 354 (742)
T ss_pred EEEEECcCCCChhhHHHHHHHHhcCceEEEEE
Confidence 99 22 345555442 23578988875
No 157
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.49 E-value=7.4e-13 Score=87.05 Aligned_cols=62 Identities=27% Similarity=0.536 Sum_probs=47.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCc----------ccccceeeEEEEEEEeCCeEEEEEEEeCCCc
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIES----------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (109)
...++|+++|.+|+|||||++++.+..+... ..++.+.+.....+..++..+.+.+||++|.
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGf 73 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGF 73 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCc
Confidence 3579999999999999999999998876443 3444444455555556677789999999994
No 158
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.48 E-value=6.3e-13 Score=80.89 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=37.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcc
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (109)
+|+++|++|+|||||++++.++.+.....+....+........ ....+.+||++|+.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~ 58 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLL 58 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcC
Confidence 7999999999999999999988764221111111122122222 34689999999974
No 159
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.48 E-value=4e-13 Score=81.39 Aligned_cols=98 Identities=18% Similarity=0.237 Sum_probs=63.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcc------ccccchhhhh--cC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE------RFRTITSSYY--RG 80 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~------~~~~~~~~~~--~~ 80 (109)
++|+++|.||||||||+|++.+.+.....-|....+.....+.+.+ ..+.++|+||-- .-+.....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999998875433334444455555666655 567899999931 1123445554 57
Q ss_pred CcEEEE-ecccchhh-----hccCCCCCCEEEee
Q 033918 81 AHGIIV-GDLNSFLQ-----QSFSSSSTPFCLFL 108 (109)
Q Consensus 81 ~~~iv~-~~~~s~~~-----~~~~~~~~P~i~v~ 108 (109)
.|+++. .|...++. .....-.+|+++++
T Consensus 79 ~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvl 112 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLYLTLQLLELGIPVVVVL 112 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEE
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 899998 55555655 11233579999886
No 160
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.47 E-value=5.8e-13 Score=79.82 Aligned_cols=98 Identities=20% Similarity=0.209 Sum_probs=62.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-cccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccc--------hhhhhc
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSYYR 79 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~ 79 (109)
++|+++|++|+|||||++++.+..... ...+....+........+ ...+.+||++|...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 689999999999999999999876421 112222223333333443 356789999997654321 224567
Q ss_pred CCcEEEE----ecccchhhhc--cCCCCCCEEEee
Q 033918 80 GAHGIIV----GDLNSFLQQS--FSSSSTPFCLFL 108 (109)
Q Consensus 80 ~~~~iv~----~~~~s~~~~~--~~~~~~P~i~v~ 108 (109)
.+|++++ +++.+..... ......|+++++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~ 114 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILELPADKPIIVVL 114 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEE
Confidence 8998888 4445554433 224678998875
No 161
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.47 E-value=4.7e-13 Score=95.75 Aligned_cols=101 Identities=20% Similarity=0.225 Sum_probs=69.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC-------CCCcccc------cceeeEEEEEEEe-----CCeEEEEEEEeCCCccc
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDS-------YIESYIS------TIGVDFKIRTVEQ-----DGKTIKLQIWDTAGQER 69 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~~~ 69 (109)
..+++++|..++|||||+.+++... +...+.. ..|.++....+.+ ++..+.+.+|||+|+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4689999999999999999998642 2222221 2244444333332 45568899999999999
Q ss_pred cccchhhhhcCCcEEEE----ecccchhh---hc-cCCCCCCEEEee
Q 033918 70 FRTITSSYYRGAHGIIV----GDLNSFLQ---QS-FSSSSTPFCLFL 108 (109)
Q Consensus 70 ~~~~~~~~~~~~~~iv~----~~~~s~~~---~~-~~~~~~P~i~v~ 108 (109)
+...+..++..+|++++ ++..+++. .. ....++|+++|+
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiVi 129 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVI 129 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999998 33222322 11 122578988875
No 162
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.47 E-value=6.3e-13 Score=97.23 Aligned_cols=101 Identities=17% Similarity=0.222 Sum_probs=72.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
.+...|+++|..++|||||++++...++..........+.....+..++ ..+.|||++|++.|..++..++..+|+++
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 3567899999999999999999988776554433332223333344443 56889999999999999999999999998
Q ss_pred E----ec---ccchhhhcc-CCCCCCEEEee
Q 033918 86 V----GD---LNSFLQQSF-SSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~---~~s~~~~~~-~~~~~P~i~v~ 108 (109)
+ ++ +++++.+.. ...++|+|+++
T Consensus 366 LVVdAddGv~~qT~e~i~~a~~~~vPiIVvi 396 (787)
T PRK05306 366 LVVAADDGVMPQTIEAINHAKAAGVPIIVAI 396 (787)
T ss_pred EEEECCCCCCHhHHHHHHHHHhcCCcEEEEE
Confidence 8 22 445555442 23579988875
No 163
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.46 E-value=4.5e-13 Score=92.80 Aligned_cols=98 Identities=20% Similarity=0.216 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccc--------cccchhhhhc
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSSYYR 79 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 79 (109)
.+|+++|.+|||||||++++.+.+.. ....+....+.....+..++ ..+.+||++|.+. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987632 11122222334444455544 6789999999876 2333456788
Q ss_pred CCcEEEE--ecccchhhh--c----cCCCCCCEEEee
Q 033918 80 GAHGIIV--GDLNSFLQQ--S----FSSSSTPFCLFL 108 (109)
Q Consensus 80 ~~~~iv~--~~~~s~~~~--~----~~~~~~P~i~v~ 108 (109)
.+|++++ ...+.+... . ....+.|+++|+
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~ 116 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVV 116 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEE
Confidence 9999999 222212111 0 122478998875
No 164
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.46 E-value=8.6e-13 Score=91.83 Aligned_cols=99 Identities=21% Similarity=0.259 Sum_probs=66.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccc--------hhhhh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSYY 78 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 78 (109)
.++|+++|.+|+|||||++++.+.+.. ....+....++....+..++ ..+.+||++|...+... ...++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 589999999999999999999987642 22223233344445566654 46789999998654321 23467
Q ss_pred cCCcEEEE----ecccchhhhcc--CCCCCCEEEee
Q 033918 79 RGAHGIIV----GDLNSFLQQSF--SSSSTPFCLFL 108 (109)
Q Consensus 79 ~~~~~iv~----~~~~s~~~~~~--~~~~~P~i~v~ 108 (109)
..+|++++ +++.+++.... ...+.|+++|+
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~ 328 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVL 328 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEE
Confidence 88999998 55555554321 13578988875
No 165
>PTZ00099 rab6; Provisional
Probab=99.45 E-value=6.6e-13 Score=82.11 Aligned_cols=78 Identities=38% Similarity=0.619 Sum_probs=66.5
Q ss_pred CCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE----ecccchhhhc--------cC
Q 033918 31 DSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV----GDLNSFLQQS--------FS 98 (109)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~----~~~~s~~~~~--------~~ 98 (109)
+.|.+.|.||.+.++....+.+++..+++.|||++|++++..++..+++.||++++ ++++||+++. ..
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 56788899999999988888888899999999999999999999999999999999 7788888743 22
Q ss_pred CCCCCEEEee
Q 033918 99 SSSTPFCLFL 108 (109)
Q Consensus 99 ~~~~P~i~v~ 108 (109)
..++|+++|.
T Consensus 83 ~~~~piilVg 92 (176)
T PTZ00099 83 GKDVIIALVG 92 (176)
T ss_pred CCCCeEEEEE
Confidence 3578888774
No 166
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.45 E-value=8e-13 Score=82.38 Aligned_cols=80 Identities=25% Similarity=0.344 Sum_probs=53.9
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCc----------cccccc
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ----------ERFRTI 73 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~ 73 (109)
..+...+|+++|++|+|||||++++.++++...+.++.+.+........ ..++.+||++|. +++..+
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 3456789999999999999999999988766666666553322222222 256899999994 334445
Q ss_pred hhhhhcCC---cEEEE
Q 033918 74 TSSYYRGA---HGIIV 86 (109)
Q Consensus 74 ~~~~~~~~---~~iv~ 86 (109)
...+++.+ +++++
T Consensus 97 ~~~~~~~~~~~~~~~~ 112 (196)
T PRK00454 97 IEEYLRTRENLKGVVL 112 (196)
T ss_pred HHHHHHhCccceEEEE
Confidence 55666655 34544
No 167
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.45 E-value=8.4e-13 Score=92.42 Aligned_cols=100 Identities=23% Similarity=0.250 Sum_probs=66.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCcc----------ccccch-
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----------RFRTIT- 74 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~- 74 (109)
...||+++|.+|||||||++++++..+. ....+....+.....+..++. .+.+||++|.. .+..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999987642 222333333444455566654 45799999952 222222
Q ss_pred hhhhcCCcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 75 SSYYRGAHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 75 ~~~~~~~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
..+++.+|++++ ++..++.... ......|+++|+
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~ 329 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAF 329 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 345788999998 5555665532 123578988875
No 168
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.44 E-value=5.5e-13 Score=87.40 Aligned_cols=96 Identities=19% Similarity=0.168 Sum_probs=59.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC--cccccceeeEEEEEEEeCCeEEEEEEEeCCCcccccc--------chhhhhc
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIE--SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT--------ITSSYYR 79 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~ 79 (109)
+|+++|.+|||||||++++.+.++.. ....+.. +.. ..+...+ ..++.+||+||...... ....++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr-~~i-~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTR-NRI-SGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCccc-CcE-EEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 68999999999999999999887532 2222222 111 1222222 35689999999753211 2345678
Q ss_pred CCcEEEE----ecccchh-hhc--cCCCCCCEEEee
Q 033918 80 GAHGIIV----GDLNSFL-QQS--FSSSSTPFCLFL 108 (109)
Q Consensus 80 ~~~~iv~----~~~~s~~-~~~--~~~~~~P~i~v~ 108 (109)
++|++++ ++..+.+ .+. ....+.|+++|+
T Consensus 79 ~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~ 114 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTR 114 (270)
T ss_pred hCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEE
Confidence 8999998 3333332 111 123578988875
No 169
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=7.9e-14 Score=84.07 Aligned_cols=97 Identities=22% Similarity=0.351 Sum_probs=75.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
+.-|++.+|..|+|||||++.+.+++ ...+.||... .++.+.+. ...++.+|.+|+.+.++.|..|+..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDr-l~qhvPTlHP--TSE~l~Ig--~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHP--TSEELSIG--GMTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccc-ccccCCCcCC--ChHHheec--CceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 45699999999999999999998877 5666777653 33455553 4778899999999999999999999999999
Q ss_pred ----ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 ----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
.|++.|.... +.-.++|+++..
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilg 128 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILG 128 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeec
Confidence 6667776532 233678887653
No 170
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=7.4e-14 Score=84.70 Aligned_cols=97 Identities=30% Similarity=0.505 Sum_probs=71.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC---C----CCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDS---Y----IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (109)
.+.++++|+.++|||+|+.+..... + +.+-.++.|. +..++.+. ...+.+||.+|++..+.+|..||..
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgL--nig~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGL--NIGTIEVC--NAPLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccce--eecceeec--cceeEEEEcCChHHHHHHHHHHHHH
Confidence 5789999999999999999865321 1 2334556664 33455554 3567899999999999999999999
Q ss_pred CcEEEE----ecccchhhhc---------cCCCCCCEEEee
Q 033918 81 AHGIIV----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 81 ~~~iv~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+|++++ ++++.|+.-. +..+.+|+++.+
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~la 133 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLA 133 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhc
Confidence 999999 7777776622 344677776643
No 171
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.43 E-value=5.7e-13 Score=95.10 Aligned_cols=100 Identities=20% Similarity=0.150 Sum_probs=67.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCccc----ccceeeEEEEEEEe------------CCeEEEEEEEeCCCcccccc
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYI----STIGVDFKIRTVEQ------------DGKTIKLQIWDTAGQERFRT 72 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~i~D~~g~~~~~~ 72 (109)
--|+++|.+++|||||++++.+..+..... ++.+..+....... ......+.+||++|++.+..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 358999999999999999999887654322 22232222111000 00012388999999999999
Q ss_pred chhhhhcCCcEEEE----ec---ccchhhhcc-CCCCCCEEEee
Q 033918 73 ITSSYYRGAHGIIV----GD---LNSFLQQSF-SSSSTPFCLFL 108 (109)
Q Consensus 73 ~~~~~~~~~~~iv~----~~---~~s~~~~~~-~~~~~P~i~v~ 108 (109)
++..++..+|++++ ++ +++++.+.. ...++|+++++
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~ 128 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAA 128 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEE
Confidence 99999999999998 22 456665432 23578988875
No 172
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.43 E-value=1e-12 Score=83.34 Aligned_cols=99 Identities=19% Similarity=0.270 Sum_probs=64.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCc-----------c------cccceeeEEEEEEE--e---CCeEEEEEEEeCCCc
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIES-----------Y------ISTIGVDFKIRTVE--Q---DGKTIKLQIWDTAGQ 67 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~-----------~------~~~~~~~~~~~~~~--~---~~~~~~~~i~D~~g~ 67 (109)
+|+++|..++|||||+.+++....... + ....+.+....... . ++....+.+||++|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999987543221 0 01111222111111 1 345688999999999
Q ss_pred cccccchhhhhcCCcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 68 ERFRTITSSYYRGAHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 68 ~~~~~~~~~~~~~~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
..+......++..+|++++ ++..++.... .....+|+++|+
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iivi 130 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVI 130 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 9998888888999999998 2233333211 122458988875
No 173
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.42 E-value=5.6e-13 Score=79.97 Aligned_cols=94 Identities=21% Similarity=0.213 Sum_probs=57.7
Q ss_pred EEEcCCCCCHHHHHHHHHhCCC--CCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcccccc--------chhhhhcCC
Q 033918 12 LLIGDSGVGKSCLLLRFADDSY--IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT--------ITSSYYRGA 81 (109)
Q Consensus 12 ~liG~~~vGKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~ 81 (109)
+++|.+|+|||||++++.+... ...+.++ ..+.........+ ..+.+||++|...+.. .+..++..+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~-t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGV-TRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCc-eeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 4799999999999999997652 2232222 2222223333333 5688999999876543 334567889
Q ss_pred cEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 82 HGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 82 ~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
|++++ .+..+..... ....+.|+++|+
T Consensus 78 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~ 112 (157)
T cd01894 78 DVILFVVDGREGLTPADEEIAKYLRKSKKPVILVV 112 (157)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEE
Confidence 99998 2222222111 123468988876
No 174
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.41 E-value=1.5e-12 Score=92.99 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=69.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh---CCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD---DSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
+.|+++|..++|||||++++.+ +.+.+++..+...+.....+..++ ..+.+||++|+++|......++..+|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 4689999999999999999986 334444444444444434455544 67899999999999887788888999999
Q ss_pred E----ec---ccchhhhc-cCCCCCC-EEEee
Q 033918 86 V----GD---LNSFLQQS-FSSSSTP-FCLFL 108 (109)
Q Consensus 86 ~----~~---~~s~~~~~-~~~~~~P-~i~v~ 108 (109)
+ ++ +++++.+. ....++| +++++
T Consensus 79 LVVDa~~G~~~qT~ehl~il~~lgi~~iIVVl 110 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLAVLDLLGIPHTIVVI 110 (581)
T ss_pred EEEECCCCCcHHHHHHHHHHHHcCCCeEEEEE
Confidence 8 22 34555543 1224678 77664
No 175
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.40 E-value=1.2e-12 Score=81.77 Aligned_cols=78 Identities=12% Similarity=0.182 Sum_probs=47.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC----CCCCcc---c--ccceeeEEEEEEE----------eCCeEEEEEEEeCCCccc
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD----SYIESY---I--STIGVDFKIRTVE----------QDGKTIKLQIWDTAGQER 69 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~----~~~~~~---~--~~~~~~~~~~~~~----------~~~~~~~~~i~D~~g~~~ 69 (109)
++|+++|.+++|||||++++... .+...+ . .|.+..+....+. .......+.+||++|+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999863 111111 1 2223222222222 112356889999999865
Q ss_pred cccchhhhhcCCcEEEE
Q 033918 70 FRTITSSYYRGAHGIIV 86 (109)
Q Consensus 70 ~~~~~~~~~~~~~~iv~ 86 (109)
+..........+|++++
T Consensus 81 ~~~~~~~~~~~~d~vi~ 97 (192)
T cd01889 81 LIRTIIGGAQIIDLMLL 97 (192)
T ss_pred HHHHHHHHHhhCCEEEE
Confidence 43333344556788887
No 176
>PRK10218 GTP-binding protein; Provisional
Probab=99.40 E-value=2.8e-12 Score=91.87 Aligned_cols=80 Identities=14% Similarity=0.221 Sum_probs=62.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh--CCCCCcc------------cccceeeEEEEEEEeCCeEEEEEEEeCCCcccccc
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFAD--DSYIESY------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT 72 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 72 (109)
...+|+++|..++|||||+.+++. +.+...+ ..+.+.+.......+.....++.+||++|+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 467999999999999999999986 4333221 22345555555555555678899999999999999
Q ss_pred chhhhhcCCcEEEE
Q 033918 73 ITSSYYRGAHGIIV 86 (109)
Q Consensus 73 ~~~~~~~~~~~iv~ 86 (109)
.+..+++.+|++++
T Consensus 84 ~v~~~l~~aDg~IL 97 (607)
T PRK10218 84 EVERVMSMVDSVLL 97 (607)
T ss_pred HHHHHHHhCCEEEE
Confidence 99999999999999
No 177
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.39 E-value=9.6e-13 Score=90.98 Aligned_cols=97 Identities=23% Similarity=0.270 Sum_probs=61.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC-cccccceeeEEEEEEEeCCeEEEEEEEeCCCc--------cccccchhhhhcC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ--------ERFRTITSSYYRG 80 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~~~~~~~ 80 (109)
+|+++|.+|||||||++++.+.+... ...+....+.....+..++ ..+.+|||+|. +.+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 58999999999999999999876321 1122222223334444444 35889999995 3444556678899
Q ss_pred CcEEEE-ec-ccchhhhc------cCCCCCCEEEee
Q 033918 81 AHGIIV-GD-LNSFLQQS------FSSSSTPFCLFL 108 (109)
Q Consensus 81 ~~~iv~-~~-~~s~~~~~------~~~~~~P~i~v~ 108 (109)
+|++++ .| ...+.... ....+.|+++|+
T Consensus 79 ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVv 114 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVA 114 (429)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEE
Confidence 999999 22 11111110 123578998875
No 178
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.38 E-value=3.1e-12 Score=80.31 Aligned_cols=101 Identities=17% Similarity=0.260 Sum_probs=57.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCccccccee-eEEEEEEEeC-CeEEEEEEEeCCCccccccchhhh-----hcC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGV-DFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSY-----YRG 80 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~-----~~~ 80 (109)
.+||+++|++|+|||||++.+.+..+........+. +.......+. .....+.+||++|..........| +..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 378999999999999999999986654433332221 1110000111 112358899999975433222233 567
Q ss_pred CcEEEEecccchhhhc------cCCCCCCEEEee
Q 033918 81 AHGIIVGDLNSFLQQS------FSSSSTPFCLFL 108 (109)
Q Consensus 81 ~~~iv~~~~~s~~~~~------~~~~~~P~i~v~ 108 (109)
+|++++.+..+|...+ ......|+++|+
T Consensus 81 ~d~~l~v~~~~~~~~d~~~~~~l~~~~~~~ilV~ 114 (197)
T cd04104 81 YDFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVR 114 (197)
T ss_pred cCEEEEEeCCCCCHHHHHHHHHHHHhCCCEEEEE
Confidence 8998882233454422 112357887775
No 179
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.37 E-value=7.9e-12 Score=75.88 Aligned_cols=99 Identities=21% Similarity=0.220 Sum_probs=59.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC-cccccceeeEEEEEEEeCCeEEEEEEEeCCCcccccc----------c-hh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT----------I-TS 75 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~-~~ 75 (109)
.++|+++|.+|+|||||++++.+..... ...+....+.....+..++ ..+.+||++|...... . ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5789999999999999999998765321 1122222222223344443 3477999999643311 1 12
Q ss_pred hhhcCCcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 76 SYYRGAHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 76 ~~~~~~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
..+..+|++++ .++.+..... ......|+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~ 120 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVV 120 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEE
Confidence 34567898888 3344443321 122467888875
No 180
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.37 E-value=3.9e-12 Score=92.80 Aligned_cols=100 Identities=18% Similarity=0.185 Sum_probs=62.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCC-cccccceeeEEEEEEEeCCeEEEEEEEeCCCccc--------cccchhhh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSSY 77 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 77 (109)
...+|+++|.+|||||||++++.+.+... ...+....+........++ ..+.+|||+|.+. +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 35789999999999999999999876321 1122222222222223333 4688999999753 23344567
Q ss_pred hcCCcEEEE-ec-ccchhhhc------cCCCCCCEEEee
Q 033918 78 YRGAHGIIV-GD-LNSFLQQS------FSSSSTPFCLFL 108 (109)
Q Consensus 78 ~~~~~~iv~-~~-~~s~~~~~------~~~~~~P~i~v~ 108 (109)
+..+|++++ .| ...+...+ ....+.|+++|+
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~ 390 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAV 390 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 889999999 22 22222211 234689999986
No 181
>PRK00089 era GTPase Era; Reviewed
Probab=99.37 E-value=8.2e-12 Score=82.56 Aligned_cols=99 Identities=19% Similarity=0.204 Sum_probs=59.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcc--cccceeeEEEEEEEeCCeEEEEEEEeCCCccccc--------cchhh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESY--ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR--------TITSS 76 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~ 76 (109)
+...|+++|.+|+|||||++++++.+..... ..+.. .....+... ...++.++|++|..... .....
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~--~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~ 80 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR--HRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWS 80 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCccc--ccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHH
Confidence 4567999999999999999999987753211 11111 111111222 23678999999964322 23344
Q ss_pred hhcCCcEEEE-eccc-chhh----h-c-cCCCCCCEEEee
Q 033918 77 YYRGAHGIIV-GDLN-SFLQ----Q-S-FSSSSTPFCLFL 108 (109)
Q Consensus 77 ~~~~~~~iv~-~~~~-s~~~----~-~-~~~~~~P~i~v~ 108 (109)
.+.++|++++ .|.. .+.. + . ....+.|+++|+
T Consensus 81 ~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVl 120 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVL 120 (292)
T ss_pred HHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEE
Confidence 6788999998 2221 1222 1 1 123468999886
No 182
>COG1159 Era GTPase [General function prediction only]
Probab=99.36 E-value=3.3e-12 Score=83.53 Aligned_cols=102 Identities=17% Similarity=0.100 Sum_probs=62.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccc--------cccchhhh
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSSY 77 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 77 (109)
.+.-.|+++|.||||||||+|++.+.+..-..+.... +.+.....+.....++.|.||||-.+ +.......
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QT-TR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQT-TRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcch-hhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 3467899999999999999999999885322211111 11212222222367899999999532 23344566
Q ss_pred hcCCcEEEE-ec-ccchhhhc------cCCCCCCEEEee
Q 033918 78 YRGAHGIIV-GD-LNSFLQQS------FSSSSTPFCLFL 108 (109)
Q Consensus 78 ~~~~~~iv~-~~-~~s~~~~~------~~~~~~P~i~v~ 108 (109)
+.++|+++| .+ .+.|...+ ....+.|+++++
T Consensus 83 l~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~i 121 (298)
T COG1159 83 LKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVV 121 (298)
T ss_pred hccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEE
Confidence 789999999 22 22232211 122467999876
No 183
>PRK11058 GTPase HflX; Provisional
Probab=99.36 E-value=6.9e-12 Score=86.78 Aligned_cols=99 Identities=18% Similarity=0.183 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcccc--ccch------hhhhcC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF--RTIT------SSYYRG 80 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~------~~~~~~ 80 (109)
.+|+++|.+|+|||||++++.+.++.....+....+.....+...+. ..+.+|||+|..+. ..++ ...+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999987643222222223333344454432 25679999997321 1222 234678
Q ss_pred CcEEEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 81 AHGIIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 81 ~~~iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
||++++ +++.+++.+. ....++|+++|+
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~ 316 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVM 316 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEE
Confidence 999888 5666655531 123478998875
No 184
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.36 E-value=5.9e-12 Score=87.07 Aligned_cols=100 Identities=22% Similarity=0.243 Sum_probs=63.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCC--CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccch---------
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI--ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT--------- 74 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------- 74 (109)
...++|+++|.+|+|||||++++++.+.. .....+ ..+.....+..++. .+.+||++|..+.....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gt-t~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~ 246 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGT-TRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVL 246 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCc-eECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHH
Confidence 34689999999999999999999976532 222222 22222234444443 67899999975443221
Q ss_pred --hhhhcCCcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 75 --SSYYRGAHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 75 --~~~~~~~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
..+++.+|++++ ++..+.+... ......|+++|+
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~ 290 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVV 290 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEE
Confidence 346788999998 4444444322 123468988875
No 185
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.36 E-value=2e-12 Score=83.32 Aligned_cols=97 Identities=14% Similarity=0.145 Sum_probs=63.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC----C---------ccc---ccceeeEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYI----E---------SYI---STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI 73 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~----~---------~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 73 (109)
+|+++|..|+|||||+++++...-. . .+. ...+.........+.....++.+||++|+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4899999999999999999753110 0 000 11122222233333345578999999999999888
Q ss_pred hhhhhcCCcEEEE----ecccc------hhhhccCCCCCCEEEee
Q 033918 74 TSSYYRGAHGIIV----GDLNS------FLQQSFSSSSTPFCLFL 108 (109)
Q Consensus 74 ~~~~~~~~~~iv~----~~~~s------~~~~~~~~~~~P~i~v~ 108 (109)
+..+++.+|++++ ++..+ +..+ ....+|+++++
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~--~~~~~P~iivv 123 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLL--RKLNIPTIIFV 123 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHH--HHcCCCEEEEE
Confidence 8899999999998 22111 1112 23578988875
No 186
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.35 E-value=3.3e-12 Score=89.53 Aligned_cols=102 Identities=22% Similarity=0.278 Sum_probs=76.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
.....+||+++|+.|||||||+..+...+|++..++-.+. ...-..+....+...+.|++..++-+......++.||+
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~--i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v 82 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR--ILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV 82 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCc--cccCCccCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence 3456899999999999999999999999998877665542 11112222334557899999877777777888999999
Q ss_pred EEE----ecccchhhhc--------cC---CCCCCEEEe
Q 033918 84 IIV----GDLNSFLQQS--------FS---SSSTPFCLF 107 (109)
Q Consensus 84 iv~----~~~~s~~~~~--------~~---~~~~P~i~v 107 (109)
+++ +++++++.+. .. ..++|+|||
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILv 121 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILV 121 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEE
Confidence 998 6668888754 11 258899886
No 187
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=2.1e-13 Score=80.61 Aligned_cols=77 Identities=31% Similarity=0.602 Sum_probs=66.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
++.+.+++++|..|+|||++..++.-++ .....|+.+ ++..++.+ +..++++||.+|+...++.|+.||.+.+++
T Consensus 15 ~e~e~rililgldGaGkttIlyrlqvge-vvttkPtig--fnve~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~av 89 (182)
T KOG0072|consen 15 PEREMRILILGLDGAGKTTILYRLQVGE-VVTTKPTIG--FNVETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAV 89 (182)
T ss_pred CccceEEEEeeccCCCeeEEEEEcccCc-ccccCCCCC--cCcccccc--ccccceeeEccCcccccHHHHHHhcccceE
Confidence 4578999999999999999999998777 345577777 55566666 668899999999999999999999999999
Q ss_pred EE
Q 033918 85 IV 86 (109)
Q Consensus 85 v~ 86 (109)
++
T Consensus 90 Iy 91 (182)
T KOG0072|consen 90 IY 91 (182)
T ss_pred EE
Confidence 99
No 188
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.34 E-value=8.4e-12 Score=89.27 Aligned_cols=103 Identities=20% Similarity=0.192 Sum_probs=66.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCccc----ccceeeEEEEEEEe--CCeE-----E-----EEEEEeCCCccc
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYI----STIGVDFKIRTVEQ--DGKT-----I-----KLQIWDTAGQER 69 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~-----~-----~~~i~D~~g~~~ 69 (109)
.+...|+++|.+++|||||++++.+........ ++.+..+....... .+.. . .+.+||++|++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 345679999999999999999998655432222 22332221111000 0111 1 268999999999
Q ss_pred cccchhhhhcCCcEEEE----ec---ccchhhhcc-CCCCCCEEEee
Q 033918 70 FRTITSSYYRGAHGIIV----GD---LNSFLQQSF-SSSSTPFCLFL 108 (109)
Q Consensus 70 ~~~~~~~~~~~~~~iv~----~~---~~s~~~~~~-~~~~~P~i~v~ 108 (109)
|..++...+..+|++++ ++ +++++.+.. ...++|+++++
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvvi 130 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAA 130 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEE
Confidence 99988888899999988 32 556655442 23578988775
No 189
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.33 E-value=1.3e-11 Score=74.36 Aligned_cols=78 Identities=14% Similarity=0.059 Sum_probs=49.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcccccc--------chhhhhc
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT--------ITSSYYR 79 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~ 79 (109)
..+|+++|.+|+|||||++++.+.+........... ..............+.+||++|...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTT-RNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCce-eceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 578999999999999999999877643211111111 1111112222346788999999653322 3345577
Q ss_pred CCcEEEE
Q 033918 80 GAHGIIV 86 (109)
Q Consensus 80 ~~~~iv~ 86 (109)
.+|++++
T Consensus 82 ~~d~i~~ 88 (168)
T cd04163 82 DVDLVLF 88 (168)
T ss_pred hCCEEEE
Confidence 8899888
No 190
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.33 E-value=8.6e-12 Score=81.71 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC-CC----------------cccc---cceeeEEEEEEEeCCeEEEEEEEeCCCcc
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSY-IE----------------SYIS---TIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~-~~----------------~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (109)
.+|+++|.+|+|||||+++++...- .. .+.+ ..+.+.......+.....++.+||++|+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 5799999999999999999874211 10 0000 01222333334445556889999999999
Q ss_pred ccccchhhhhcCCcEEEE
Q 033918 69 RFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 69 ~~~~~~~~~~~~~~~iv~ 86 (109)
+|......+++.+|++++
T Consensus 83 df~~~~~~~l~~aD~~Il 100 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVM 100 (267)
T ss_pred HHHHHHHHHHHHCCEEEE
Confidence 888767778889999998
No 191
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.32 E-value=2e-11 Score=89.54 Aligned_cols=99 Identities=18% Similarity=0.208 Sum_probs=64.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcccccc----------chhhh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT----------ITSSY 77 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~ 77 (109)
.++|+++|.+|||||||++++.+.+.. .....|.++..+...+.....++.++|++|...+.. ....+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~--vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR--VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 578999999999999999999876542 233334334333334444456789999999865532 12334
Q ss_pred h--cCCcEEEE-ecccchhh-----hccCCCCCCEEEee
Q 033918 78 Y--RGAHGIIV-GDLNSFLQ-----QSFSSSSTPFCLFL 108 (109)
Q Consensus 78 ~--~~~~~iv~-~~~~s~~~-----~~~~~~~~P~i~v~ 108 (109)
+ ..+|++++ .|..++++ ......++|+++++
T Consensus 81 l~~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVl 119 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVAL 119 (772)
T ss_pred HhccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEE
Confidence 3 37899888 44444443 11223578999886
No 192
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.32 E-value=8.8e-12 Score=77.61 Aligned_cols=100 Identities=24% Similarity=0.341 Sum_probs=67.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCC----------ccccccc
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG----------QERFRTI 73 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 73 (109)
+++....|+++|.+|||||||++.+++.+-....+.+.|.+..-..+.+++. +.+.|.|| ++.+..+
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence 3445678999999999999999999997755566666664443334445443 88999998 3455566
Q ss_pred hhhhhcC-Cc--EEEE----------ecccchhhhccCCCCCCEEEee
Q 033918 74 TSSYYRG-AH--GIIV----------GDLNSFLQQSFSSSSTPFCLFL 108 (109)
Q Consensus 74 ~~~~~~~-~~--~iv~----------~~~~s~~~~~~~~~~~P~i~v~ 108 (109)
...|+.. ++ ++++ .|++-++.+ ....+|+++++
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l--~~~~i~~~vv~ 142 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFL--LELGIPVIVVL 142 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHH--HHcCCCeEEEE
Confidence 6677654 22 2222 344555555 45789998886
No 193
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.31 E-value=2.1e-11 Score=70.36 Aligned_cols=96 Identities=22% Similarity=0.169 Sum_probs=56.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC--CcccccceeeEEEEEEEeCCeEEEEEEEeCCCcccc---------ccchhhhh
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYI--ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF---------RTITSSYY 78 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~ 78 (109)
||+++|.+|+|||||++.+.+.+.. .....+. .......+.+++. .+.++|++|-..- .......+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T-~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTT-RDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSS-SSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccce-eeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHH
Confidence 6899999999999999999975431 2222221 1222244455554 4469999995321 11123334
Q ss_pred cCCcEEEE-eccc-----chhhh-ccCCCCCCEEEee
Q 033918 79 RGAHGIIV-GDLN-----SFLQQ-SFSSSSTPFCLFL 108 (109)
Q Consensus 79 ~~~~~iv~-~~~~-----s~~~~-~~~~~~~P~i~v~ 108 (109)
..+|++++ .+.+ +..++ ..-....|+++|+
T Consensus 78 ~~~d~ii~vv~~~~~~~~~~~~~~~~l~~~~~~i~v~ 114 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPITEDDKNILRELKNKKPIILVL 114 (116)
T ss_dssp CTESEEEEEEETTSHSHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHCCEEEEEEECCCCCCHHHHHHHHHHhcCCCEEEEE
Confidence 78899998 2211 12221 1112788888886
No 194
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.31 E-value=1.4e-11 Score=81.11 Aligned_cols=104 Identities=19% Similarity=0.116 Sum_probs=67.2
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcc------c------cc
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE------R------FR 71 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~------~------~~ 71 (109)
++++.++|++||.||+|||||.|.+++.+........... .......+.....++.|+|++|-- + +.
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TT-r~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTT-RHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccce-eeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 4578999999999999999999999998865544443332 222333334457889999999821 1 11
Q ss_pred cchhhhhcCCcEEEE-eccc---chhh-----hccCCCCCCEEEee
Q 033918 72 TITSSYYRGAHGIIV-GDLN---SFLQ-----QSFSSSSTPFCLFL 108 (109)
Q Consensus 72 ~~~~~~~~~~~~iv~-~~~~---s~~~-----~~~~~~~~P~i~v~ 108 (109)
+-....+..||++++ .|.. ...+ ....-.++|-++||
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvm 192 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVM 192 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeec
Confidence 223455677998888 2221 1111 11334688988886
No 195
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.30 E-value=1.1e-11 Score=75.82 Aligned_cols=72 Identities=26% Similarity=0.320 Sum_probs=44.4
Q ss_pred EEcCCCCCHHHHHHHHHhCCC-CCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccc----cccch---hhhhcCCcEE
Q 033918 13 LIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTIT---SSYYRGAHGI 84 (109)
Q Consensus 13 liG~~~vGKtsl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~~~i 84 (109)
++|++|||||||++++.+.+. ...+..+. .+.....+...+ ...+.+||++|... .+.++ ..+++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t-~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTT-LEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCcee-ecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 589999999999999998764 22222221 112222333431 35678999999632 22232 3456779988
Q ss_pred EE
Q 033918 85 IV 86 (109)
Q Consensus 85 v~ 86 (109)
++
T Consensus 79 i~ 80 (176)
T cd01881 79 LH 80 (176)
T ss_pred EE
Confidence 88
No 196
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.29 E-value=2.9e-12 Score=79.27 Aligned_cols=83 Identities=27% Similarity=0.422 Sum_probs=51.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEe-CCeEEEEEEEeCCCcccccc-chhh--hhcCCcE
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRT-ITSS--YYRGAHG 83 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-~~~~--~~~~~~~ 83 (109)
.-.|+++|++|+|||+|..+|..+...+.+.+. +.+. ...+ ....-.+.+.|+|||++.+. .... +...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 346899999999999999999999765555444 3222 1222 12234588999999998876 3333 5888999
Q ss_pred EEE-ecccchhh
Q 033918 84 IIV-GDLNSFLQ 94 (109)
Q Consensus 84 iv~-~~~~s~~~ 94 (109)
+|| .|...+..
T Consensus 79 IIfvvDSs~~~~ 90 (181)
T PF09439_consen 79 IIFVVDSSTDQK 90 (181)
T ss_dssp EEEEEETTTHHH
T ss_pred EEEEEeCccchh
Confidence 999 55555543
No 197
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.28 E-value=5e-11 Score=85.46 Aligned_cols=92 Identities=20% Similarity=0.249 Sum_probs=61.2
Q ss_pred cCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccc------hhhhhc--CCcEEEE
Q 033918 15 GDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI------TSSYYR--GAHGIIV 86 (109)
Q Consensus 15 G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~~--~~~~iv~ 86 (109)
|.+|||||||++++.+.++.....+....+.....+..++ .++++||++|+..+... .+.++. .+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998876444444444444445555554 35789999998776543 344443 6888888
Q ss_pred -ecccchhhh-----ccCCCCCCEEEee
Q 033918 87 -GDLNSFLQQ-----SFSSSSTPFCLFL 108 (109)
Q Consensus 87 -~~~~s~~~~-----~~~~~~~P~i~v~ 108 (109)
.|..++++. .....++|+++++
T Consensus 79 VvDat~ler~l~l~~ql~~~~~PiIIVl 106 (591)
T TIGR00437 79 VVDASNLERNLYLTLQLLELGIPMILAL 106 (591)
T ss_pred EecCCcchhhHHHHHHHHhcCCCEEEEE
Confidence 555554431 1223578998876
No 198
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.28 E-value=3e-11 Score=86.68 Aligned_cols=103 Identities=20% Similarity=0.233 Sum_probs=67.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC--CCCC-----cc------cccceeeEEEEEEEe-----CCeEEEEEEEeCCCc
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYIE-----SY------ISTIGVDFKIRTVEQ-----DGKTIKLQIWDTAGQ 67 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~--~~~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~ 67 (109)
+...+++++|..++|||||+.+++.. .+.. .+ ....+.+.....+.+ ++..+.+.+|||+|+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 45679999999999999999999863 1111 11 111233333222222 445688999999999
Q ss_pred cccccchhhhhcCCcEEEE----ecc---cchhhhc-cCCCCCCEEEee
Q 033918 68 ERFRTITSSYYRGAHGIIV----GDL---NSFLQQS-FSSSSTPFCLFL 108 (109)
Q Consensus 68 ~~~~~~~~~~~~~~~~iv~----~~~---~s~~~~~-~~~~~~P~i~v~ 108 (109)
..+...+..++..+|++++ ++. +++.... ....++|+++|+
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvVi 133 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVL 133 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Confidence 9999999999999999998 222 2222221 123578888875
No 199
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.27 E-value=1.4e-11 Score=84.55 Aligned_cols=98 Identities=21% Similarity=0.189 Sum_probs=62.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCcccc---------ccchhhhh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF---------RTITSSYY 78 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~ 78 (109)
..|+++|.||||||||.||+.+.+.. -...|....+.........+ ..+.+.||+|-+.. .......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999987743 12233333333334444443 34889999995422 23345567
Q ss_pred cCCcEEEE-ecccc-hhhhc------cCCCCCCEEEee
Q 033918 79 RGAHGIIV-GDLNS-FLQQS------FSSSSTPFCLFL 108 (109)
Q Consensus 79 ~~~~~iv~-~~~~s-~~~~~------~~~~~~P~i~v~ 108 (109)
..||+++| .|-.+ ....+ ....+.|++||+
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvv 119 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILRRSKKPVILVV 119 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 88999999 22221 21111 235789999986
No 200
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.26 E-value=4e-11 Score=87.58 Aligned_cols=99 Identities=23% Similarity=0.280 Sum_probs=63.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCC--CCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccc----------cccc-
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSY--IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----------FRTI- 73 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~- 73 (109)
...||+++|.+|||||||++++.+.+. ...+..+. .+.....+.+++. .+.+|||+|..+ +..+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT-~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTT-RDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCC-cCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHH
Confidence 358999999999999999999998764 23333332 3333344556554 456999999532 1111
Q ss_pred hhhhhcCCcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 74 TSSYYRGAHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 74 ~~~~~~~~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
...+++.+|++++ ++..+++... ......|+++|+
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~ 568 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVF 568 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 1234678999998 4444554432 123478999885
No 201
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.26 E-value=7.7e-11 Score=79.42 Aligned_cols=98 Identities=17% Similarity=0.121 Sum_probs=57.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccc----cccchhh---hhcC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSS---YYRG 80 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~ 80 (109)
-.|.++|.||+|||||++++...+.. ..|.-| ........+.+.+ ..++.+||++|.-+ ...+... .+..
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfT-T~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFT-TLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCc-eeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 35899999999999999999876532 122211 1112222333321 24588999998632 1223333 4456
Q ss_pred CcEEEE----ecccchhhhc-------cCC---CCCCEEEee
Q 033918 81 AHGIIV----GDLNSFLQQS-------FSS---SSTPFCLFL 108 (109)
Q Consensus 81 ~~~iv~----~~~~s~~~~~-------~~~---~~~P~i~v~ 108 (109)
++++++ ++.++++... ... .+.|+++|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~ 278 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVL 278 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEE
Confidence 888888 5444565532 111 367998885
No 202
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.26 E-value=1.5e-11 Score=80.57 Aligned_cols=99 Identities=19% Similarity=0.190 Sum_probs=59.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcc-------------ccc---ceeeEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESY-------------IST---IGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI 73 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~-------------~~~---~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 73 (109)
+|+++|.+|+|||||+++++........ .+. .+.........+......+.+||++|+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999998753211000 000 011111111122223467889999999888777
Q ss_pred hhhhhcCCcEEEE----ecccchhhh----ccCCCCCCEEEee
Q 033918 74 TSSYYRGAHGIIV----GDLNSFLQQ----SFSSSSTPFCLFL 108 (109)
Q Consensus 74 ~~~~~~~~~~iv~----~~~~s~~~~----~~~~~~~P~i~v~ 108 (109)
+..++..+|++++ ++....... .....++|.++++
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivv 123 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFI 123 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 8888999999998 221111110 0123578888875
No 203
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.26 E-value=5e-11 Score=70.98 Aligned_cols=95 Identities=19% Similarity=0.136 Sum_probs=57.1
Q ss_pred EEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCcccccc-------chhhhhcCCcEE
Q 033918 13 LIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-------ITSSYYRGAHGI 84 (109)
Q Consensus 13 liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~~~i 84 (109)
++|++|+|||||++++.+.... ....+............... ...+.+||++|...... ....+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999876543 11121111122222222221 35689999999765543 334578889999
Q ss_pred EE----ecccchhhh----ccCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQ----SFSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~----~~~~~~~P~i~v~ 108 (109)
++ .+..+.... .....+.|+++++
T Consensus 80 l~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~ 111 (163)
T cd00880 80 LFVVDADLRADEEEEKLLELLRERGKPVLLVL 111 (163)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEE
Confidence 88 222222222 2334688888875
No 204
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.26 E-value=5.2e-11 Score=73.00 Aligned_cols=100 Identities=28% Similarity=0.454 Sum_probs=69.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCC--------Ccc----cccceeeEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI--------ESY----ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI 73 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 73 (109)
-...||+++|+-++|||++++++...... ..+ ..|..+++. .+.+++ ...+.++++|||++++.+
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g--~~~~~~-~~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG--SIELDE-DTGVHLFGTPGQERFKFM 84 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeeccc--ceEEcC-cceEEEecCCCcHHHHHH
Confidence 35789999999999999999999876531 111 123333333 223332 356899999999999999
Q ss_pred hhhhhcCCcEEEE----ecccchhh---hc-cCCCC-CCEEEee
Q 033918 74 TSSYYRGAHGIIV----GDLNSFLQ---QS-FSSSS-TPFCLFL 108 (109)
Q Consensus 74 ~~~~~~~~~~iv~----~~~~s~~~---~~-~~~~~-~P~i~v~ 108 (109)
|..+.+.+.++++ +....|+. ++ ....+ +|++++.
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~ 128 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAI 128 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEe
Confidence 9999999999988 55555532 11 22233 8888764
No 205
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.25 E-value=2.2e-11 Score=87.22 Aligned_cols=98 Identities=13% Similarity=0.167 Sum_probs=66.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh--CCCCCcc------------cccceeeEEEEEEEeCCeEEEEEEEeCCCccccccch
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD--DSYIESY------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT 74 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 74 (109)
.+|+++|..++|||||+.+++. +.+.... ....+.+.......+......+.+||++|+..|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 4799999999999999999985 3332211 1122334444443444456789999999999999888
Q ss_pred hhhhcCCcEEEE-eccc---------chhhhccCCCCCCEEEee
Q 033918 75 SSYYRGAHGIIV-GDLN---------SFLQQSFSSSSTPFCLFL 108 (109)
Q Consensus 75 ~~~~~~~~~iv~-~~~~---------s~~~~~~~~~~~P~i~v~ 108 (109)
..+++.+|++++ .|.. .|..+ ....+|+++++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a--~~~~ip~IVvi 123 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPMPQTRFVLKKA--LELGLKPIVVI 123 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCcHHHHHHHHHH--HHCCCCEEEEE
Confidence 999999999998 2211 12222 23578888775
No 206
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.25 E-value=1.6e-11 Score=74.64 Aligned_cols=86 Identities=20% Similarity=0.157 Sum_probs=50.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccc----cchhhhhcCCcEEE
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR----TITSSYYRGAHGII 85 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~~~~~~~~~~iv 85 (109)
+|+++|.+|+|||||++++.+.. .. ..++.+ ..+... .+||++|..... ......++.+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~-~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TL-ARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-cc-CccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999976543 11 112222 122222 269999973222 11123468899999
Q ss_pred E----ecccchhhhc--cCCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS--FSSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~--~~~~~~P~i~v~ 108 (109)
+ ++.+++.... ......|+++++
T Consensus 70 ~v~d~~~~~s~~~~~~~~~~~~~~ii~v~ 98 (158)
T PRK15467 70 YVHGANDPESRLPAGLLDIGVSKRQIAVI 98 (158)
T ss_pred EEEeCCCcccccCHHHHhccCCCCeEEEE
Confidence 9 4444443321 112456877664
No 207
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.24 E-value=8.7e-11 Score=81.49 Aligned_cols=100 Identities=24% Similarity=0.231 Sum_probs=60.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCC-CCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcccccc----------c-h
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT----------I-T 74 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~-~ 74 (109)
..++|+++|.+|+|||||++++++... .....+....+.....+..++ ..+.+||++|..+... . .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 469999999999999999999987652 222222222222223333443 4578999999633211 1 1
Q ss_pred hhhhcCCcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 75 SSYYRGAHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 75 ~~~~~~~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
..+++.+|++++ ++..+..... ......|+++++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~ 291 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVV 291 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEE
Confidence 246778999988 3333433321 122468888875
No 208
>PRK13351 elongation factor G; Reviewed
Probab=99.23 E-value=3.7e-11 Score=87.48 Aligned_cols=105 Identities=14% Similarity=0.168 Sum_probs=66.5
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCC-------------CCcccc---cceeeEEEEEEEeCCeEEEEEEEeCCCc
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSY-------------IESYIS---TIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~-------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (109)
..+...+|+++|..++|||||+++++...- ..++.+ ..+.........+......+.+||++|+
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~ 83 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH 83 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence 445678999999999999999999985311 000000 0111111111122224578899999999
Q ss_pred cccccchhhhhcCCcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 68 ERFRTITSSYYRGAHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 68 ~~~~~~~~~~~~~~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
.++...+..+++.+|++++ ++..+.+... .....+|+++++
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iivi 132 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFI 132 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 9998888999999999888 2222222211 223578988875
No 209
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.23 E-value=3.8e-14 Score=86.96 Aligned_cols=90 Identities=41% Similarity=0.778 Sum_probs=75.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCC-eEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
+..+|+.++|+-++|||+++.|+....|...|..+.+.++......-+. ..+.+++||..||+++..+...||+++++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 5679999999999999999999999999999999998777654444433 356789999999999999999999999876
Q ss_pred EE----ecccchhhh
Q 033918 85 IV----GDLNSFLQQ 95 (109)
Q Consensus 85 v~----~~~~s~~~~ 95 (109)
.+ +....|+..
T Consensus 103 ~iVfdvt~s~tfe~~ 117 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPV 117 (229)
T ss_pred EEEEEccccccccHH
Confidence 65 777778773
No 210
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.22 E-value=3.8e-11 Score=85.02 Aligned_cols=105 Identities=15% Similarity=0.181 Sum_probs=66.5
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHh--CCCC--C-------------cc---cccceeeEEEEEEEeCCeEEEEEEEe
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFAD--DSYI--E-------------SY---ISTIGVDFKIRTVEQDGKTIKLQIWD 63 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~--~~~~--~-------------~~---~~~~~~~~~~~~~~~~~~~~~~~i~D 63 (109)
+.++..+|+++|.+++|||||+.+++. +... . .+ ....+.++......+......+.+||
T Consensus 6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliD 85 (526)
T PRK00741 6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLD 85 (526)
T ss_pred hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEE
Confidence 335678999999999999999999973 1100 0 00 01112233333333444557899999
Q ss_pred CCCccccccchhhhhcCCcEEEE-eccc-chhh----h-c-cCCCCCCEEEee
Q 033918 64 TAGQERFRTITSSYYRGAHGIIV-GDLN-SFLQ----Q-S-FSSSSTPFCLFL 108 (109)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~~~iv~-~~~~-s~~~----~-~-~~~~~~P~i~v~ 108 (109)
++|+..+......++..+|++++ .|.. ..+. + . ....++|+++++
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~i 138 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFI 138 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 99999888877778899999999 2211 1111 0 0 123588988875
No 211
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.22 E-value=8.3e-11 Score=70.96 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=40.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCc
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (109)
.|+++|++|+|||||++.+.++.+.....++.+.+........+. .+.+||++|.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~ 55 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGY 55 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCc
Confidence 489999999999999999997666666666655433333333332 6889999984
No 212
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.22 E-value=3.5e-11 Score=78.96 Aligned_cols=97 Identities=19% Similarity=0.208 Sum_probs=61.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC-C---Cc---------ccc---cceeeEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSY-I---ES---------YIS---TIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI 73 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~-~---~~---------~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 73 (109)
+|+++|.+++|||||+++++...- . .. +.+ ..+.........+.....++.++|+||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 489999999999999999874210 0 00 000 1122222222222224567899999999888888
Q ss_pred hhhhhcCCcEEEE-ecc-c--------chhhhccCCCCCCEEEee
Q 033918 74 TSSYYRGAHGIIV-GDL-N--------SFLQQSFSSSSTPFCLFL 108 (109)
Q Consensus 74 ~~~~~~~~~~iv~-~~~-~--------s~~~~~~~~~~~P~i~v~ 108 (109)
+..+++.+|++++ .|. . -+..+ ...++|.++++
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~--~~~~~p~ivvi 123 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQA--DRYNVPRIAFV 123 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHH--HHcCCCEEEEE
Confidence 8999999999998 221 1 11112 23568888775
No 213
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.21 E-value=1.6e-10 Score=77.72 Aligned_cols=98 Identities=16% Similarity=0.141 Sum_probs=57.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccc----cccchhhhh---cC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSSYY---RG 80 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~---~~ 80 (109)
-.|+++|.+|+|||||++++...+.. ..|+-+ ....+...+.+++ ..++.+||++|..+ ...+...++ ..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fT-T~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFT-TLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCC-ccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 46899999999999999999876532 122211 1112222333432 35688999999632 223334443 45
Q ss_pred CcEEEE----ecc---cchhhhc-------c---CCCCCCEEEee
Q 033918 81 AHGIIV----GDL---NSFLQQS-------F---SSSSTPFCLFL 108 (109)
Q Consensus 81 ~~~iv~----~~~---~s~~~~~-------~---~~~~~P~i~v~ 108 (109)
++++++ ++. ++++... . ...+.|+++|+
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~ 280 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVL 280 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEE
Confidence 888888 333 3443321 1 12478999886
No 214
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.20 E-value=1.5e-10 Score=82.06 Aligned_cols=105 Identities=16% Similarity=0.205 Sum_probs=68.1
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHh-CCCCCc-------------------ccccceeeEEEEEEEeCCeEEEEEEEe
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFAD-DSYIES-------------------YISTIGVDFKIRTVEQDGKTIKLQIWD 63 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~-~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D 63 (109)
+.++..+|+++|.+++|||||+.+++. ...... .....+.++......++.....+.+||
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 345678999999999999999999863 211110 011123334444444555568899999
Q ss_pred CCCccccccchhhhhcCCcEEEE-ecc-cchhhh------ccCCCCCCEEEee
Q 033918 64 TAGQERFRTITSSYYRGAHGIIV-GDL-NSFLQQ------SFSSSSTPFCLFL 108 (109)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~~~iv~-~~~-~s~~~~------~~~~~~~P~i~v~ 108 (109)
++|+..+......++..+|++++ .|. ..++.. .....++|+++++
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~Piivvi 139 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFM 139 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 99998888766778889999999 222 112210 0123578988875
No 215
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.20 E-value=5.6e-11 Score=86.92 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=58.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhC---------------CCCCc---ccccceeeEEEEEEEeCCeEEEEEEEeCC
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADD---------------SYIES---YISTIGVDFKIRTVEQDGKTIKLQIWDTA 65 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 65 (109)
..+...+|+++|..++|||||+.+++.. .+.+. ...|............++...++.+|||+
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP 94 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP 94 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence 3455789999999999999999999752 11111 11122211222223345667889999999
Q ss_pred CccccccchhhhhcCCcEEEE
Q 033918 66 GQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 66 g~~~~~~~~~~~~~~~~~iv~ 86 (109)
|+..+......++..+|++++
T Consensus 95 G~~~f~~~~~~al~~aD~~ll 115 (720)
T TIGR00490 95 GHVDFGGDVTRAMRAVDGAIV 115 (720)
T ss_pred CccccHHHHHHHHHhcCEEEE
Confidence 999888777889999999998
No 216
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.19 E-value=1.2e-10 Score=74.49 Aligned_cols=99 Identities=15% Similarity=0.192 Sum_probs=62.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC--Ccc------------cccceeeE--EEEEEEeC--------CeEEEEEEEeCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYI--ESY------------ISTIGVDF--KIRTVEQD--------GKTIKLQIWDTA 65 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~--~~~------------~~~~~~~~--~~~~~~~~--------~~~~~~~i~D~~ 65 (109)
+|+++|..++|||||+.+|+...-. ... ....+... ....+... +....+.+||++
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999754211 000 00011111 11112222 346889999999
Q ss_pred CccccccchhhhhcCCcEEEE----ecccchhhh---c-cCCCCCCEEEee
Q 033918 66 GQERFRTITSSYYRGAHGIIV----GDLNSFLQQ---S-FSSSSTPFCLFL 108 (109)
Q Consensus 66 g~~~~~~~~~~~~~~~~~iv~----~~~~s~~~~---~-~~~~~~P~i~v~ 108 (109)
|++.|......+++.+|++++ ++..+.+.. . .....+|+++++
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilvi 132 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVI 132 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 999999888999999999998 222222221 1 122467888875
No 217
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.18 E-value=2.7e-10 Score=73.36 Aligned_cols=74 Identities=26% Similarity=0.285 Sum_probs=49.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccc-------cchhhhhcCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TITSSYYRGA 81 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~ 81 (109)
+++++|++|+|||||++++.+.... ..+..+ ..+.....+.+.+ ..+++||++|..+.. .....+++++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~t-T~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFT-TLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCc-cccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence 7899999999999999999976532 222211 1122333444543 568899999974322 1234578899
Q ss_pred cEEEE
Q 033918 82 HGIIV 86 (109)
Q Consensus 82 ~~iv~ 86 (109)
|++++
T Consensus 79 d~il~ 83 (233)
T cd01896 79 DLILM 83 (233)
T ss_pred CEEEE
Confidence 99988
No 218
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.16 E-value=8.6e-11 Score=74.36 Aligned_cols=77 Identities=23% Similarity=0.191 Sum_probs=49.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC-Cc-c------------------c---------ccceeeEEEEEEEeCCeEEEEE
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYI-ES-Y------------------I---------STIGVDFKIRTVEQDGKTIKLQ 60 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~-~~-~------------------~---------~~~~~~~~~~~~~~~~~~~~~~ 60 (109)
+|+++|.+|+|||||+++++...-. .. . . ...+.........+.....++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999998753211 10 0 0 0011111111112222334678
Q ss_pred EEeCCCccccccchhhhhcCCcEEEE
Q 033918 61 IWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 61 i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
+||++|++++......++..+|++++
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~ll 106 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAIL 106 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEE
Confidence 99999998876666677889999998
No 219
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.13 E-value=2.9e-10 Score=71.44 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=53.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC------CCcc--------cccceeeEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSY------IESY--------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI 73 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 73 (109)
.++|+++|..++|||||+.+++.... ...+ ....+.........+.....++.+.|++|+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 47899999999999999999975310 0000 011232333333334444567889999999888776
Q ss_pred hhhhhcCCcEEEE
Q 033918 74 TSSYYRGAHGIIV 86 (109)
Q Consensus 74 ~~~~~~~~~~iv~ 86 (109)
....+..+|++++
T Consensus 82 ~~~~~~~~D~~il 94 (195)
T cd01884 82 MITGAAQMDGAIL 94 (195)
T ss_pred HHHHhhhCCEEEE
Confidence 6777888999888
No 220
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.13 E-value=2.4e-11 Score=75.71 Aligned_cols=102 Identities=21% Similarity=0.250 Sum_probs=63.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcc------------------cccceeeEEEEEEEeCCeEEEEEEEeCCCcc
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESY------------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (109)
...+|+++|..++|||||+.+++........ ......+..............+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 3578999999999999999999854321100 0001111122222212345678999999999
Q ss_pred ccccchhhhhcCCcEEEE-ecc-cch-----hhhc-cCCCCCCEEEee
Q 033918 69 RFRTITSSYYRGAHGIIV-GDL-NSF-----LQQS-FSSSSTPFCLFL 108 (109)
Q Consensus 69 ~~~~~~~~~~~~~~~iv~-~~~-~s~-----~~~~-~~~~~~P~i~v~ 108 (109)
.+.......+..+|++++ .|. +.. +.+. ....++|+++++
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvl 129 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVL 129 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEE
T ss_pred ceeecccceecccccceeeeecccccccccccccccccccccceEEee
Confidence 988878888899999998 221 112 1121 234688877775
No 221
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.12 E-value=1.4e-09 Score=75.07 Aligned_cols=100 Identities=21% Similarity=0.247 Sum_probs=67.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccc--------cchhhh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR--------TITSSY 77 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~ 77 (109)
..+|++++|.||||||||+|.+.+.+-. -...|....++-...+.+++ +.+.+.||.|--+.. ..-...
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 3689999999999999999999987642 23344444566667777766 677899999943221 223456
Q ss_pred hcCCcEEEE-ecc------cchhhhccCCCCCCEEEee
Q 033918 78 YRGAHGIIV-GDL------NSFLQQSFSSSSTPFCLFL 108 (109)
Q Consensus 78 ~~~~~~iv~-~~~------~s~~~~~~~~~~~P~i~v~ 108 (109)
+..||.+++ -|. ....-.+....+.|+++|+
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~ 331 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVL 331 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEE
Confidence 788999999 221 1222232345678888875
No 222
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.12 E-value=5.9e-10 Score=70.32 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=26.1
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
..+.|||++|++.+...+...+..+|++++
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~ll 112 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALL 112 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEE
Confidence 568999999999888777778888899888
No 223
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.12 E-value=1.3e-10 Score=74.62 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=46.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEe-CCeEEEEEEEeCCCccccc-----cchhhhhcCCcE
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFR-----TITSSYYRGAHG 83 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~-----~~~~~~~~~~~~ 83 (109)
||+++|++++||||+.+-+..+-.+.+ ....+.+.....-.+ ....+.+++||+||+..+- ......++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999998776543322 222222222222222 1234689999999996443 345677899999
Q ss_pred EEE
Q 033918 84 IIV 86 (109)
Q Consensus 84 iv~ 86 (109)
+|+
T Consensus 80 LIy 82 (232)
T PF04670_consen 80 LIY 82 (232)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
No 224
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.12 E-value=1e-09 Score=75.94 Aligned_cols=97 Identities=18% Similarity=0.147 Sum_probs=57.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCcc----ccccchhhhh---cCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----RFRTITSSYY---RGA 81 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~---~~~ 81 (109)
.|+++|.||||||||++++.+.+.. ..|+-+ ....+...+.+++ ..++.+||++|.. +...+...++ ..+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfT-Tl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFT-TLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcc-eeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 7999999999999999999976532 122211 1111112233321 3468899999963 2223444444 458
Q ss_pred cEEEE----ec---ccchhhhc-------cC---CCCCCEEEee
Q 033918 82 HGIIV----GD---LNSFLQQS-------FS---SSSTPFCLFL 108 (109)
Q Consensus 82 ~~iv~----~~---~~s~~~~~-------~~---~~~~P~i~v~ 108 (109)
+++++ ++ ++++++.. .. ....|.++|+
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~ 281 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVA 281 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEE
Confidence 89888 22 24444321 11 2478998886
No 225
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.10 E-value=5.8e-10 Score=66.54 Aligned_cols=85 Identities=24% Similarity=0.384 Sum_probs=53.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCc----cccccchhhhhcCCcEEE
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ----ERFRTITSSYYRGAHGII 85 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~~~iv 85 (109)
||+++|+.++|||||++++.+.+. .|..|...++.. .+.|+||- ..+....-....+||.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~~------------~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYYD------------NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEecc------------cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 899999999999999999987653 555555444432 24677762 334444444556899999
Q ss_pred E----ecccchhhhccCC-CCCCEEEee
Q 033918 86 V----GDLNSFLQQSFSS-SSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~~~~-~~~P~i~v~ 108 (109)
+ +++.++....+.. -..|+|=|+
T Consensus 69 ll~dat~~~~~~pP~fa~~f~~pvIGVI 96 (143)
T PF10662_consen 69 LLQDATEPRSVFPPGFASMFNKPVIGVI 96 (143)
T ss_pred EEecCCCCCccCCchhhcccCCCEEEEE
Confidence 8 4444433333222 256776553
No 226
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.10 E-value=9.9e-10 Score=77.22 Aligned_cols=76 Identities=14% Similarity=0.126 Sum_probs=47.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC-cccccceeeEEEEEEEeCCeEEEEEEEeCCCcc----ccccc---hhhhhc
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----RFRTI---TSSYYR 79 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~---~~~~~~ 79 (109)
.-.|+++|.||+|||||++++.+.+... .|+-+ ....+...+...+ .++.+||++|.- +.+.+ ....+.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfT-Tl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFT-TLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcc-cccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 3579999999999999999998765322 22211 1222333344433 578999999952 11112 223456
Q ss_pred CCcEEEE
Q 033918 80 GAHGIIV 86 (109)
Q Consensus 80 ~~~~iv~ 86 (109)
.++++++
T Consensus 236 radvLv~ 242 (500)
T PRK12296 236 RCAVLVH 242 (500)
T ss_pred hcCEEEE
Confidence 6889887
No 227
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.08 E-value=4.2e-10 Score=82.12 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=56.7
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCCC-C---Ccccc------------cceeeEEEEEEEeCCeEEEEEEEeCCC
Q 033918 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSY-I---ESYIS------------TIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (109)
Q Consensus 3 ~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~-~---~~~~~------------~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (109)
...+...+|+++|..++|||||+++++...- . ..... ..+.........+.....++.+|||+|
T Consensus 5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG 84 (689)
T TIGR00484 5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPG 84 (689)
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCC
Confidence 3455678999999999999999999974211 1 11110 112222222222222346789999999
Q ss_pred ccccccchhhhhcCCcEEEE
Q 033918 67 QERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 67 ~~~~~~~~~~~~~~~~~iv~ 86 (109)
+.++...+..+++.+|++++
T Consensus 85 ~~~~~~~~~~~l~~~D~~il 104 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVA 104 (689)
T ss_pred CcchhHHHHHHHHHhCEEEE
Confidence 99888788899999999999
No 228
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.08 E-value=6.7e-10 Score=74.43 Aligned_cols=76 Identities=20% Similarity=0.267 Sum_probs=49.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCC------CcccccceeeEEEEE---------------EEeCC-eEEEEEEEeCCCc-
Q 033918 11 LLLIGDSGVGKSCLLLRFADDSYI------ESYISTIGVDFKIRT---------------VEQDG-KTIKLQIWDTAGQ- 67 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~~~~------~~~~~~~~~~~~~~~---------------~~~~~-~~~~~~i~D~~g~- 67 (109)
|.++|.+|||||||++++.+..+. ....|+.+..+.... ...++ ..+.+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987643 122344443222100 01122 3367999999997
Q ss_pred ---cccccchhh---hhcCCcEEEE
Q 033918 68 ---ERFRTITSS---YYRGAHGIIV 86 (109)
Q Consensus 68 ---~~~~~~~~~---~~~~~~~iv~ 86 (109)
++.+.+... .+++||++++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~ 105 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIH 105 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEE
Confidence 445555455 4889999998
No 229
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.07 E-value=1.1e-09 Score=76.02 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=53.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHh--CCCCCcc---------------------------cccceeeEEEEEEEeCCe
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFAD--DSYIESY---------------------------ISTIGVDFKIRTVEQDGK 55 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~--~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~ 55 (109)
....++|+++|..++|||||+.+++. +...... ....+.........+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 34569999999999999999999985 2211100 001122122222233334
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
...+.+||++|+++|......++..+|++++
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~il 114 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVL 114 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEE
Confidence 5788999999998876655556788999998
No 230
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.07 E-value=1.2e-09 Score=72.66 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=48.5
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCC--CcccccceeeEEEEEEEeCCeEEEEEEEeCCCcccccc-------ch
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYI--ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-------IT 74 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~ 74 (109)
+....++|+++|.+|+||||++|++++.+.. ....+ .+..........+ ...+.++||+|...... ..
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s-~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~i 110 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQS-EGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNII 110 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCC-cceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHH
Confidence 3456899999999999999999999977632 12211 1111111222233 35789999999653321 11
Q ss_pred hhhh--cCCcEEEE
Q 033918 75 SSYY--RGAHGIIV 86 (109)
Q Consensus 75 ~~~~--~~~~~iv~ 86 (109)
..++ ...|++++
T Consensus 111 k~~l~~~g~DvVLy 124 (313)
T TIGR00991 111 KRFLLGKTIDVLLY 124 (313)
T ss_pred HHHhhcCCCCEEEE
Confidence 2222 14788888
No 231
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.07 E-value=1.6e-09 Score=74.41 Aligned_cols=75 Identities=15% Similarity=0.066 Sum_probs=46.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC-cccccceeeEEEEEEEeCCeEEEEEEEeCCCcccc-------ccchhhhhcCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-------RTITSSYYRGA 81 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~ 81 (109)
.|+++|.||+|||||++++.+.+... .++.| ........+...+ ...+.++|+||..+- .......+..+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~T-T~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFT-TLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCC-ccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 68999999999999999998765321 22221 1112222333332 234889999996421 11122346788
Q ss_pred cEEEE
Q 033918 82 HGIIV 86 (109)
Q Consensus 82 ~~iv~ 86 (109)
+++++
T Consensus 239 dvlL~ 243 (390)
T PRK12298 239 RVLLH 243 (390)
T ss_pred CEEEE
Confidence 99998
No 232
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.04 E-value=1.3e-09 Score=75.69 Aligned_cols=81 Identities=20% Similarity=0.195 Sum_probs=53.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCC--Cc------------c---------------cccceeeEEEEEEEeCCeE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI--ES------------Y---------------ISTIGVDFKIRTVEQDGKT 56 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~--~~------------~---------------~~~~~~~~~~~~~~~~~~~ 56 (109)
...++|+++|..++|||||+.+++...-. .. . ....|.+.......+....
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 34689999999999999999999843210 00 0 0011222222222333345
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
..+.+||++|++++.......+..+|++++
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~il 113 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVL 113 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEE
Confidence 789999999998776544555678999998
No 233
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.04 E-value=9.5e-10 Score=65.65 Aligned_cols=54 Identities=24% Similarity=0.313 Sum_probs=38.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCc
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (109)
+++++|.+|+|||||++++.+.+.. ......+.+.....+.+++ .+.+|||+|-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV-SVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999999987754 2333333334444555544 4789999984
No 234
>PRK12735 elongation factor Tu; Reviewed
Probab=99.02 E-value=2.1e-09 Score=74.00 Aligned_cols=81 Identities=15% Similarity=0.099 Sum_probs=53.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC-------CCC----C---cccccceeeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADD-------SYI----E---SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~-------~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (109)
...++|+++|..++|||||+++++.. ++. . ......|.+.......+.....++.|+|++|+++|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 34789999999999999999999852 100 0 000112222222233333344578899999998876
Q ss_pred cchhhhhcCCcEEEE
Q 033918 72 TITSSYYRGAHGIIV 86 (109)
Q Consensus 72 ~~~~~~~~~~~~iv~ 86 (109)
......+..+|++++
T Consensus 90 ~~~~~~~~~aD~~ll 104 (396)
T PRK12735 90 KNMITGAAQMDGAIL 104 (396)
T ss_pred HHHHhhhccCCEEEE
Confidence 655566778999888
No 235
>CHL00071 tufA elongation factor Tu
Probab=99.01 E-value=2.2e-09 Score=74.21 Aligned_cols=81 Identities=16% Similarity=0.155 Sum_probs=53.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCC------Cccc--------ccceeeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI------ESYI--------STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~------~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (109)
...++|+++|..++|||||++++++..-. ..+. ...+.........+.....++.+.|+||+.++.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 44689999999999999999999864110 0000 012222222222333334567899999998876
Q ss_pred cchhhhhcCCcEEEE
Q 033918 72 TITSSYYRGAHGIIV 86 (109)
Q Consensus 72 ~~~~~~~~~~~~iv~ 86 (109)
......+..+|++++
T Consensus 90 ~~~~~~~~~~D~~il 104 (409)
T CHL00071 90 KNMITGAAQMDGAIL 104 (409)
T ss_pred HHHHHHHHhCCEEEE
Confidence 666667788999998
No 236
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.01 E-value=2.9e-09 Score=73.30 Aligned_cols=78 Identities=23% Similarity=0.301 Sum_probs=50.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-cc-----cccceeeEEEEE--------------E-EeC-CeEEEEEEEeCCC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIE-SY-----ISTIGVDFKIRT--------------V-EQD-GKTIKLQIWDTAG 66 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~-~~-----~~~~~~~~~~~~--------------~-~~~-~~~~~~~i~D~~g 66 (109)
++|.++|.+|||||||++++.+.++.. .| .|+.|..+.... . ..+ .....+++||++|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999876542 23 222332111000 0 011 1236789999999
Q ss_pred c----cccccchhhh---hcCCcEEEE
Q 033918 67 Q----ERFRTITSSY---YRGAHGIIV 86 (109)
Q Consensus 67 ~----~~~~~~~~~~---~~~~~~iv~ 86 (109)
. .+...+...+ +++||++++
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~ 108 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIH 108 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEE
Confidence 4 3334455555 789999998
No 237
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.00 E-value=2e-09 Score=69.98 Aligned_cols=64 Identities=28% Similarity=0.438 Sum_probs=41.9
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCc--ccccceeeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIES--YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (109)
..+..++|+++|.+|+|||||++.+++...... ..++ ...........++ ..+.++|++|....
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~-T~~~~~~~~~~~g--~~i~vIDTPGl~~~ 92 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSE-TLRVREVSGTVDG--FKLNIIDTPGLLES 92 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCc-eEEEEEEEEEECC--eEEEEEECCCcCcc
Confidence 455689999999999999999999998764321 1121 1111212223333 56899999996543
No 238
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.00 E-value=7.3e-10 Score=72.08 Aligned_cols=77 Identities=25% Similarity=0.394 Sum_probs=50.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcc--cccceeeEEEEEEEeCCeEEEEEEEeCCCccc-------cccchhhh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESY--ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-------FRTITSSY 77 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~ 77 (109)
..+++++.|..|+||||++|.+..++..+.. ......+.+-+ ..+++ -.+.+||++|-++ +++....+
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~-~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLR-LSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHH-hhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence 5789999999999999999999976543221 11111111111 12222 2378999998554 66777888
Q ss_pred hcCCcEEEE
Q 033918 78 YRGAHGIIV 86 (109)
Q Consensus 78 ~~~~~~iv~ 86 (109)
+...|.++.
T Consensus 115 l~~~DLvL~ 123 (296)
T COG3596 115 LPKLDLVLW 123 (296)
T ss_pred hhhccEEEE
Confidence 999996655
No 239
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.99 E-value=1.2e-09 Score=68.41 Aligned_cols=76 Identities=25% Similarity=0.355 Sum_probs=45.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCccc--ccceeeEEEEEEEeCCeEEEEEEEeCCCccccc--------cc---hh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYI--STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR--------TI---TS 75 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~---~~ 75 (109)
++|+++|.+|+||||+++.+++.+...... +..............+ ..+.++||||-.... .+ ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999876432221 1111112222223333 468899999954321 11 11
Q ss_pred hhhcCCcEEEE
Q 033918 76 SYYRGAHGIIV 86 (109)
Q Consensus 76 ~~~~~~~~iv~ 86 (109)
.....+|++++
T Consensus 79 ~~~~g~~~ill 89 (196)
T cd01852 79 LSAPGPHAFLL 89 (196)
T ss_pred hcCCCCEEEEE
Confidence 22356788888
No 240
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1e-09 Score=69.00 Aligned_cols=82 Identities=24% Similarity=0.322 Sum_probs=59.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhc---CCcEE
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR---GAHGI 84 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~~~i 84 (109)
.-.|+++|++++|||+|..+++.+.+...+.+..+ +.....+.+. ..++.|.|||.+.+.....+++ .+-++
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep---n~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP---NEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeeecc---ceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 35799999999999999999999976555444332 2233333322 3789999999998887777777 68888
Q ss_pred EE-ecccchhh
Q 033918 85 IV-GDLNSFLQ 94 (109)
Q Consensus 85 v~-~~~~s~~~ 94 (109)
+| .|...|..
T Consensus 113 VFVVDSa~f~k 123 (238)
T KOG0090|consen 113 VFVVDSATFLK 123 (238)
T ss_pred EEEEeccccch
Confidence 88 66666654
No 241
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.98 E-value=3.8e-09 Score=76.22 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=50.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC---CCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD---SYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
-|.++|..++|||||++++.+. .+.++.......+.....+...+. ..+.+||+||+++|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 4789999999999999999853 233222111221221112222222 247899999999887666677888999988
No 242
>PRK12739 elongation factor G; Reviewed
Probab=98.97 E-value=1.6e-09 Score=79.07 Aligned_cols=81 Identities=17% Similarity=0.156 Sum_probs=55.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhC--CC--CCccc------------ccceeeE--EEEEEEeCCeEEEEEEEeCC
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADD--SY--IESYI------------STIGVDF--KIRTVEQDGKTIKLQIWDTA 65 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~--~~--~~~~~------------~~~~~~~--~~~~~~~~~~~~~~~i~D~~ 65 (109)
..+...+|+++|..++|||||+++++.. .. ..... ...+... ....+.. ...++.++|++
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTP 81 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KGHRINIIDTP 81 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE--CCEEEEEEcCC
Confidence 3456789999999999999999999742 10 00000 0112212 2222333 34678999999
Q ss_pred CccccccchhhhhcCCcEEEE
Q 033918 66 GQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 66 g~~~~~~~~~~~~~~~~~iv~ 86 (109)
|+..+...+..++..+|++++
T Consensus 82 G~~~f~~e~~~al~~~D~~il 102 (691)
T PRK12739 82 GHVDFTIEVERSLRVLDGAVA 102 (691)
T ss_pred CHHHHHHHHHHHHHHhCeEEE
Confidence 998887788889999999998
No 243
>PLN03126 Elongation factor Tu; Provisional
Probab=98.97 E-value=3.8e-09 Score=74.22 Aligned_cols=81 Identities=17% Similarity=0.165 Sum_probs=53.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCC------CCCcc--------cccceeeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDS------YIESY--------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (109)
...++|+++|..++|||||+.+|+... ....+ ....+.........+......+.++|++|+++|-
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 347899999999999999999998521 11111 1112222222222232234578899999999887
Q ss_pred cchhhhhcCCcEEEE
Q 033918 72 TITSSYYRGAHGIIV 86 (109)
Q Consensus 72 ~~~~~~~~~~~~iv~ 86 (109)
......+..+|++++
T Consensus 159 ~~~~~g~~~aD~ail 173 (478)
T PLN03126 159 KNMITGAAQMDGAIL 173 (478)
T ss_pred HHHHHHHhhCCEEEE
Confidence 655666778899888
No 244
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.96 E-value=3.6e-09 Score=72.86 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=52.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC-----C--CC-----C--cccccceeeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADD-----S--YI-----E--SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~-----~--~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (109)
...++|+++|..++|||||+.+|+.. + +. . ......|.+.......++.....+.+||++|+++|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 45789999999999999999999732 0 00 0 000112222223333444445678899999999886
Q ss_pred cchhhhhcCCcEEEE
Q 033918 72 TITSSYYRGAHGIIV 86 (109)
Q Consensus 72 ~~~~~~~~~~~~iv~ 86 (109)
.........+|++++
T Consensus 90 ~~~~~~~~~~D~~il 104 (394)
T TIGR00485 90 KNMITGAAQMDGAIL 104 (394)
T ss_pred HHHHHHHhhCCEEEE
Confidence 555555667899888
No 245
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.94 E-value=6.2e-09 Score=62.98 Aligned_cols=56 Identities=23% Similarity=0.221 Sum_probs=40.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCC
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (109)
...+++++|.+++||||+++++.++. ...+.++.+.+.....+..+. .+.+||++|
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 46789999999999999999998655 444555666443333333333 488999998
No 246
>PRK00007 elongation factor G; Reviewed
Probab=98.93 E-value=3.7e-09 Score=77.30 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=54.3
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHh--CCC--CCccc------------ccceeeEEEEEEEeCCeEEEEEEEeCCCc
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFAD--DSY--IESYI------------STIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~--~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (109)
..+...+|+++|..++|||||+++++. +.. ..... ...+.........+......+.+.||+|+
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~ 85 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGH 85 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCc
Confidence 355678999999999999999999973 210 00000 11122222222222223467899999999
Q ss_pred cccccchhhhhcCCcEEEE
Q 033918 68 ERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 68 ~~~~~~~~~~~~~~~~iv~ 86 (109)
..+.......+..+|++++
T Consensus 86 ~~f~~ev~~al~~~D~~vl 104 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVA 104 (693)
T ss_pred HHHHHHHHHHHHHcCEEEE
Confidence 8776666777888999888
No 247
>PRK12736 elongation factor Tu; Reviewed
Probab=98.93 E-value=6.7e-09 Score=71.53 Aligned_cols=80 Identities=15% Similarity=0.104 Sum_probs=52.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCC--------------cccccceeeEEEEEEEeCCeEEEEEEEeCCCcccccc
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIE--------------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT 72 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 72 (109)
..++|+++|..++|||||+.++++..... ......+.+.......+......+.++|++|+++|..
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~ 90 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVK 90 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHH
Confidence 47899999999999999999997521000 0001122222323333433445678999999988766
Q ss_pred chhhhhcCCcEEEE
Q 033918 73 ITSSYYRGAHGIIV 86 (109)
Q Consensus 73 ~~~~~~~~~~~iv~ 86 (109)
.....+..+|++++
T Consensus 91 ~~~~~~~~~d~~ll 104 (394)
T PRK12736 91 NMITGAAQMDGAIL 104 (394)
T ss_pred HHHHHHhhCCEEEE
Confidence 55556678899988
No 248
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.91 E-value=8.8e-09 Score=62.45 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=36.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCC
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (109)
..++++++|.+|||||||+|++.+.+.. ...+..|.......+.... .+.+.|+||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVC-KVAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCce-eeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 3578999999999999999999876532 2223333323323333322 267999998
No 249
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.91 E-value=9e-09 Score=63.52 Aligned_cols=55 Identities=25% Similarity=0.341 Sum_probs=38.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (109)
.++++++|.+|+|||||++++.+.+.. ...+..|.+.....+..+. .+.++|+||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~-~~~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRAC-NVGATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccc-eecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 479999999999999999999986632 2233334333333334433 478999998
No 250
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.90 E-value=5.4e-09 Score=66.98 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYI 34 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~ 34 (109)
||+++|+.++|||||+.++..+.+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~ 25 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELD 25 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcC
Confidence 6899999999999999999976653
No 251
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.90 E-value=8.2e-09 Score=63.47 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=40.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCc
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (109)
..++++++|.+|+|||||++++.+..+. ...+..+.+.....+.++ ..+.++||+|-
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4579999999999999999999987753 233333333443444443 24789999983
No 252
>PRK00049 elongation factor Tu; Reviewed
Probab=98.89 E-value=1.3e-08 Score=70.17 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=53.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCC---C---cc--------cccceeeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI---E---SY--------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~---~---~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (109)
...++|+++|..++|||||+.+++..... . .+ ....+.+.......+.....++.+.|++|+.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 34789999999999999999999863100 0 00 0012222222333333344568899999998876
Q ss_pred cchhhhhcCCcEEEE
Q 033918 72 TITSSYYRGAHGIIV 86 (109)
Q Consensus 72 ~~~~~~~~~~~~iv~ 86 (109)
......+..+|++++
T Consensus 90 ~~~~~~~~~aD~~ll 104 (396)
T PRK00049 90 KNMITGAAQMDGAIL 104 (396)
T ss_pred HHHHhhhccCCEEEE
Confidence 655666788999998
No 253
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.88 E-value=2.5e-08 Score=71.61 Aligned_cols=100 Identities=17% Similarity=0.225 Sum_probs=63.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcc------ccccchhhhhc-
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE------RFRTITSSYYR- 79 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~------~~~~~~~~~~~- 79 (109)
+..+|+++|.||||||||.|++.+.+..-..=|....+.........+ -++++.|.||-= .-+...+.|+.
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 356799999999999999999998764333333333334444444444 457899999831 11234455543
Q ss_pred -CCcEEEE-ecccchhh-----hccCCCCCCEEEee
Q 033918 80 -GAHGIIV-GDLNSFLQ-----QSFSSSSTPFCLFL 108 (109)
Q Consensus 80 -~~~~iv~-~~~~s~~~-----~~~~~~~~P~i~v~ 108 (109)
+.|+++- .|...++. +....-++|+++++
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaL 115 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYLTLQLLELGIPMILAL 115 (653)
T ss_pred CCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEe
Confidence 4588777 66655555 33344678877765
No 254
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.87 E-value=1.1e-08 Score=70.78 Aligned_cols=80 Identities=13% Similarity=0.116 Sum_probs=51.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCccccc------ceeeEEEE------------EEEe----CC------eEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYIST------IGVDFKIR------------TVEQ----DG------KTI 57 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~------~~~~~~~~------------~~~~----~~------~~~ 57 (109)
+..++|+++|..++|||||++++.+.. ...+... ....+... .++. +. ...
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~-~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVW-TDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCee-cccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 457899999999999999999986432 1111111 01110000 0001 11 135
Q ss_pred EEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 58 KLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 58 ~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
.+.+||++|+++|...+......+|++++
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIl 109 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALL 109 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEE
Confidence 68999999999998877888888899888
No 255
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.87 E-value=2.3e-08 Score=66.04 Aligned_cols=60 Identities=25% Similarity=0.551 Sum_probs=40.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcc----------cccceeeEEEEEEEeCCeEEEEEEEeCCC
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESY----------ISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (109)
..++|+|+|.+|+|||||++.|.+....... ..+.........+.-++..+.+.++||+|
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpG 72 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPG 72 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCC
Confidence 4789999999999999999999876543321 11222233333444466789999999998
No 256
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.86 E-value=1e-08 Score=70.67 Aligned_cols=99 Identities=21% Similarity=0.288 Sum_probs=60.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEE--EEEEeCCeEEEEEEEeCCCc----------ccccc-c
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKI--RTVEQDGKTIKLQIWDTAGQ----------ERFRT-I 73 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~g~----------~~~~~-~ 73 (109)
..+||+++|.||+|||||+|++++.+-.- ..+..|.+..+ ..+..++ -.+.+.||.|- +.|.- -
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~I-v~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~r 253 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVI-VSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVAR 253 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEE-ecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehh
Confidence 46999999999999999999999876321 12222322222 3334444 35679999983 33332 2
Q ss_pred hhhhhcCCcEEEE--ecccchhhhc------cCCCCCCEEEee
Q 033918 74 TSSYYRGAHGIIV--GDLNSFLQQS------FSSSSTPFCLFL 108 (109)
Q Consensus 74 ~~~~~~~~~~iv~--~~~~s~~~~~------~~~~~~P~i~v~ 108 (109)
.......++++++ ...+-+...+ ......|+++|+
T Consensus 254 t~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvv 296 (444)
T COG1160 254 TLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVV 296 (444)
T ss_pred hHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEE
Confidence 2455677888888 3334444422 123566666664
No 257
>PTZ00258 GTP-binding protein; Provisional
Probab=98.83 E-value=1.6e-08 Score=69.41 Aligned_cols=81 Identities=21% Similarity=0.202 Sum_probs=49.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCe---------------EEEEEEEeCCCccc-
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQER- 69 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~- 69 (109)
..-++|.++|.||||||||++++.+.+......|....+.+...+.+.+. ..++.+.|++|--.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 34679999999999999999999776543222232222223233333222 23589999999431
Q ss_pred ---cccch---hhhhcCCcEEEE
Q 033918 70 ---FRTIT---SSYYRGAHGIIV 86 (109)
Q Consensus 70 ---~~~~~---~~~~~~~~~iv~ 86 (109)
-..+. ...++.+|++++
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~ 121 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYH 121 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEE
Confidence 11122 234567999998
No 258
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.82 E-value=7.7e-09 Score=65.72 Aligned_cols=57 Identities=28% Similarity=0.405 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccc--cceeeEEEEEEEeCCeEEEEEEEeCCCc
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYIS--TIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (109)
++|+++|..|+||||++|.+++......... .............++ ..+.++||||-
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl 59 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGL 59 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SS
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCC
Confidence 5899999999999999999998765433211 111123333345555 45779999983
No 259
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.82 E-value=3.1e-08 Score=65.62 Aligned_cols=57 Identities=26% Similarity=0.327 Sum_probs=39.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCc
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (109)
..++++++|.+||||||+++++.+.+... ..+..|.+.....+..+. .+.++||||-
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAK-TGNRPGVTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccc-cCCCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence 46899999999999999999999876422 233334334433444433 3789999995
No 260
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.80 E-value=4.1e-08 Score=69.10 Aligned_cols=81 Identities=22% Similarity=0.238 Sum_probs=51.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCC-CCc------------cccc------------------ceeeEEEEEEEeCC
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-IES------------YIST------------------IGVDFKIRTVEQDG 54 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~-~~~------------~~~~------------------~~~~~~~~~~~~~~ 54 (109)
...++|+++|..++|||||+.+++...- ... ...+ .+.+.......+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 4579999999999999999999874321 110 0000 01111111122223
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
...++.|+|++|++.|.......+..+|++++
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~all 136 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAIL 136 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 34578899999998886555555788999998
No 261
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.80 E-value=3.1e-08 Score=65.30 Aligned_cols=57 Identities=25% Similarity=0.323 Sum_probs=39.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCc
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (109)
..++++++|.+|||||||++++.+.+.... ....+.+.....+.+.. .+.++|+||-
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 458999999999999999999987663222 22333333333444433 3789999996
No 262
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.79 E-value=2.5e-08 Score=66.40 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=39.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCC-cccccceeeEEEEEEEeCCeEEEEEEEeCCC
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (109)
....|++.|.||||||||++.+.+.+..- .|+-|. -..+...+.. ....+++.||||
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTT-K~i~vGhfe~--~~~R~QvIDTPG 224 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTT-KGIHVGHFER--GYLRIQVIDTPG 224 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccc-cceeEeeeec--CCceEEEecCCc
Confidence 46789999999999999999998876422 232221 1233333333 446788999999
No 263
>PLN03127 Elongation factor Tu; Provisional
Probab=98.79 E-value=4.3e-08 Score=68.57 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=51.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC------CCCCcc--------cccceeeEEEEEEEeCCeEEEEEEEeCCCcccccc
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADD------SYIESY--------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT 72 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 72 (109)
..++|+++|..++|||||+.++.+. .....+ ....|.+.......+.....++.+.|++|+..|..
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~ 139 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVK 139 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHH
Confidence 4689999999999999999998621 100000 00122222222333333445788999999987765
Q ss_pred chhhhhcCCcEEEE
Q 033918 73 ITSSYYRGAHGIIV 86 (109)
Q Consensus 73 ~~~~~~~~~~~iv~ 86 (109)
........+|++++
T Consensus 140 ~~~~g~~~aD~all 153 (447)
T PLN03127 140 NMITGAAQMDGGIL 153 (447)
T ss_pred HHHHHHhhCCEEEE
Confidence 44455567999988
No 264
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.78 E-value=4.1e-08 Score=66.78 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=47.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCe---------------EEEEEEEeCCCccc---
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQER--- 69 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~--- 69 (109)
.++|.++|.||+|||||++++.+.+......|....+.....+.+.+. ..++.+.|++|--.
T Consensus 2 ~~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 2 GLKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 378999999999999999999987632221122221222223333221 13589999999421
Q ss_pred -cccch---hhhhcCCcEEEE
Q 033918 70 -FRTIT---SSYYRGAHGIIV 86 (109)
Q Consensus 70 -~~~~~---~~~~~~~~~iv~ 86 (109)
-..+. ...++.+|++++
T Consensus 82 ~g~glg~~fL~~i~~aD~li~ 102 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVH 102 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEE
Confidence 11122 223568999998
No 265
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.77 E-value=8.7e-08 Score=64.35 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=28.8
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
.+.+.+||++|+...+..|.+++.++++++|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iif 190 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIF 190 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEE
Confidence 4678899999999999999999999999999
No 266
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.76 E-value=4e-08 Score=67.97 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=49.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC-CCc------------ccc------------------cceeeEEEEEEEeCCeEE
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSY-IES------------YIS------------------TIGVDFKIRTVEQDGKTI 57 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~-~~~------------~~~------------------~~~~~~~~~~~~~~~~~~ 57 (109)
+||+++|..++|||||+.+++...- ... ... ..+.+.............
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 5899999999999999999864321 000 000 011111111222223345
Q ss_pred EEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 58 KLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 58 ~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
++.++|++|+++|.......+..+|++++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~all 109 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVL 109 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEE
Confidence 78899999999886655567788999998
No 267
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.76 E-value=3.8e-08 Score=65.58 Aligned_cols=77 Identities=25% Similarity=0.213 Sum_probs=51.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCc------ccc-ccchhhhhcC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ------ERF-RTITSSYYRG 80 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~------~~~-~~~~~~~~~~ 80 (109)
.-.++++|.|+||||||++.+.+.+.....-+....+.....+.+.+ .++++.|+||- .+- ....-...++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 45799999999999999999998764332222222233444555644 67889999962 111 1234456788
Q ss_pred CcEEEE
Q 033918 81 AHGIIV 86 (109)
Q Consensus 81 ~~~iv~ 86 (109)
||.+++
T Consensus 141 ADlIii 146 (365)
T COG1163 141 ADLIII 146 (365)
T ss_pred CCEEEE
Confidence 999999
No 268
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.75 E-value=4e-08 Score=56.71 Aligned_cols=34 Identities=44% Similarity=0.502 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCccc-ccce
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYI-STIG 42 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~-~~~~ 42 (109)
+|++++|+.|+|||+|+.++....+...+. ++.+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~ 35 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG 35 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh
Confidence 589999999999999999998777755444 4433
No 269
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.75 E-value=4.6e-08 Score=67.77 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=49.5
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCccc------ccceeeEEE----------------EEEEeCC------e
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYI------STIGVDFKI----------------RTVEQDG------K 55 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~------~~~~~~~~~----------------~~~~~~~------~ 55 (109)
.+...++|+++|..++|||||+.++.+. +...+. .|....+.. .....+. .
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~-~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGV-WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCe-ecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 4456799999999999999999998542 111111 111111100 0000000 0
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
...+.+||++|++++..........+|++++
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~ll 114 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAIL 114 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEE
Confidence 2578999999998876554555556788887
No 270
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.75 E-value=3.8e-08 Score=73.44 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=65.2
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCCCC-C----------cccc---cceeeEEE--EEEEe--------------
Q 033918 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYI-E----------SYIS---TIGVDFKI--RTVEQ-------------- 52 (109)
Q Consensus 3 ~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~-~----------~~~~---~~~~~~~~--~~~~~-------------- 52 (109)
...+...+|+++|..++|||||+.+++...-. . .+.+ ..+.+..+ ..+..
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER 93 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence 34667889999999999999999999753311 0 0000 01111111 11111
Q ss_pred CCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--ecccchhh-----hc-cCCCCCCEEEee
Q 033918 53 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV--GDLNSFLQ-----QS-FSSSSTPFCLFL 108 (109)
Q Consensus 53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~--~~~~s~~~-----~~-~~~~~~P~i~v~ 108 (109)
......+.+.|++|+..|.......++.+|++++ ...+.... +. ....++|.++++
T Consensus 94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~i 157 (843)
T PLN00116 94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTV 157 (843)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEE
Confidence 1125678999999999998877888888999888 11112111 11 134578988875
No 271
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.75 E-value=5.6e-08 Score=70.58 Aligned_cols=82 Identities=22% Similarity=0.226 Sum_probs=51.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCC-Ccc-----------ccc-------------------ceeeEEEEEEEeC
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESY-----------IST-------------------IGVDFKIRTVEQD 53 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~-~~~-----------~~~-------------------~~~~~~~~~~~~~ 53 (109)
....++|+++|.+++|||||+++++...-. ... ..+ .|.+.......+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 345689999999999999999998853211 100 000 0111111111222
Q ss_pred CeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 54 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
....++.|+|++|++.+.......+..+|++++
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~ll 133 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAII 133 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEE
Confidence 233467899999998876545556788999888
No 272
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.75 E-value=2.8e-08 Score=65.42 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=45.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCe---------------EEEEEEEeCCCccc----cc
Q 033918 11 LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQER----FR 71 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~----~~ 71 (109)
+.++|.||+|||||++++.+.+......|....+.....+.+.+. ...++++|++|--+ -.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 478999999999999999987643222222222222223333322 23589999998421 11
Q ss_pred cchhhh---hcCCcEEEE
Q 033918 72 TITSSY---YRGAHGIIV 86 (109)
Q Consensus 72 ~~~~~~---~~~~~~iv~ 86 (109)
.+...+ ++.+|+++.
T Consensus 81 glg~~fL~~i~~~D~li~ 98 (274)
T cd01900 81 GLGNKFLSHIREVDAIAH 98 (274)
T ss_pred HHHHHHHHHHHhCCEEEE
Confidence 222233 467999998
No 273
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.74 E-value=4.1e-08 Score=62.65 Aligned_cols=77 Identities=17% Similarity=0.213 Sum_probs=49.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC-CC-------------------------cccc---cceeeEEEEEEEeCCeEEEEE
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSY-IE-------------------------SYIS---TIGVDFKIRTVEQDGKTIKLQ 60 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~-~~-------------------------~~~~---~~~~~~~~~~~~~~~~~~~~~ 60 (109)
+|+++|..++|||||+.+++...- .. .+.+ ..+.........+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999863210 00 0000 011111212222222456789
Q ss_pred EEeCCCccccccchhhhhcCCcEEEE
Q 033918 61 IWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 61 i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
+||++|+..+...+...+..+|++++
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~ 106 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVL 106 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEE
Confidence 99999998777666667788999998
No 274
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.74 E-value=3.6e-08 Score=61.48 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=37.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC-------cccccceeeEEEEEEEeCCeEEEEEEEeCCC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIE-------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (109)
..+++++|.+|||||||++.+....... ...+..+.+.....+..+. .+.++|+||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 4689999999999999999998754211 1122223333444444433 378999998
No 275
>PTZ00416 elongation factor 2; Provisional
Probab=98.72 E-value=6.5e-08 Score=72.12 Aligned_cols=104 Identities=17% Similarity=0.200 Sum_probs=62.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCC-C-c---------ccc---cceeeEEE--EEEEeC--------CeEEEEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYI-E-S---------YIS---TIGVDFKI--RTVEQD--------GKTIKLQ 60 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~-~-~---------~~~---~~~~~~~~--~~~~~~--------~~~~~~~ 60 (109)
.+...+|+++|..++|||||+.+++...-. . . +.+ ..+..... ..+... +....+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 456679999999999999999999863211 0 0 000 00111110 111221 1246689
Q ss_pred EEeCCCccccccchhhhhcCCcEEEE-ec-ccchhh-----hc-cCCCCCCEEEee
Q 033918 61 IWDTAGQERFRTITSSYYRGAHGIIV-GD-LNSFLQ-----QS-FSSSSTPFCLFL 108 (109)
Q Consensus 61 i~D~~g~~~~~~~~~~~~~~~~~iv~-~~-~~s~~~-----~~-~~~~~~P~i~v~ 108 (109)
+.|++|+.++.......++.+|++++ .| .+-+.. +. ....++|+|+++
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~i 151 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFI 151 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEE
Confidence 99999999887777888899999998 11 111111 11 123468988876
No 276
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=7e-08 Score=67.67 Aligned_cols=101 Identities=16% Similarity=0.145 Sum_probs=76.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCC-eEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
..=|+++|.-..|||||+-.+...+...........+....++..+. ..-.+.|.|||||+.|..++..-.+-+|.+++
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL 84 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL 84 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence 34488999999999999999988876655554444445555555541 23468999999999999999999899999998
Q ss_pred -------ecccchhhhcc-CCCCCCEEEee
Q 033918 87 -------GDLNSFLQQSF-SSSSTPFCLFL 108 (109)
Q Consensus 87 -------~~~~s~~~~~~-~~~~~P~i~v~ 108 (109)
-.+++.+.++. ...+.|+++++
T Consensus 85 VVa~dDGv~pQTiEAI~hak~a~vP~iVAi 114 (509)
T COG0532 85 VVAADDGVMPQTIEAINHAKAAGVPIVVAI 114 (509)
T ss_pred EEEccCCcchhHHHHHHHHHHCCCCEEEEE
Confidence 55677777663 45699999875
No 277
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.69 E-value=6.9e-08 Score=64.97 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=42.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCc
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (109)
...++.++|-|||||||++|++.+.+. -...+..|.+-....+.++.. +.++||||-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 358899999999999999999998874 333444455455555566554 789999994
No 278
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.68 E-value=1.5e-07 Score=63.78 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=27.9
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
..+.+||.+|+...+..|.+++.++++++|
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiF 213 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIF 213 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEE
Confidence 567899999999899999999999999999
No 279
>PRK12740 elongation factor G; Reviewed
Probab=98.64 E-value=8.2e-08 Score=70.07 Aligned_cols=93 Identities=22% Similarity=0.214 Sum_probs=56.9
Q ss_pred EcCCCCCHHHHHHHHHhCCCC----Ccccc------------cceeeE--EEEEEEeCCeEEEEEEEeCCCccccccchh
Q 033918 14 IGDSGVGKSCLLLRFADDSYI----ESYIS------------TIGVDF--KIRTVEQDGKTIKLQIWDTAGQERFRTITS 75 (109)
Q Consensus 14 iG~~~vGKtsl~~~~~~~~~~----~~~~~------------~~~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 75 (109)
+|..++|||||+++++...-. ..... ..+.+. ....+.. ....+.+||++|+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~--~~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW--KGHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE--CCEEEEEEECCCcHHHHHHHH
Confidence 689999999999999643210 00000 011111 2223333 347789999999988877788
Q ss_pred hhhcCCcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 76 SYYRGAHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 76 ~~~~~~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
.++..+|++++ ++..+..... ....++|+++|+
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~ 119 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFV 119 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEE
Confidence 88999999998 2222222211 123478988875
No 280
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.64 E-value=2.6e-08 Score=67.87 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=39.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcc-ccc--ceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhh-----h
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESY-IST--IGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSY-----Y 78 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~ 78 (109)
..++|+++|++|+|||||+|.+.+-+..+.. .++ .+.+.....+... ..-.+.+||.||..-.......| +
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 4789999999999999999999763322211 221 1101111111111 12238899999965433333333 3
Q ss_pred cCCcEEEE
Q 033918 79 RGAHGIIV 86 (109)
Q Consensus 79 ~~~~~iv~ 86 (109)
..-|.+++
T Consensus 113 ~~yD~fii 120 (376)
T PF05049_consen 113 YRYDFFII 120 (376)
T ss_dssp GG-SEEEE
T ss_pred cccCEEEE
Confidence 45688887
No 281
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.63 E-value=4.1e-07 Score=64.53 Aligned_cols=103 Identities=19% Similarity=0.258 Sum_probs=73.1
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
...+.+++.++|+.++|||++++.++++.+...+..+....+....+...+....+.+.|.+-. ....+.... ..||+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 3446899999999999999999999998887766666555555555555566667788887754 222222222 66888
Q ss_pred EEE----ecccchhhhc------cCCCCCCEEEee
Q 033918 84 IIV----GDLNSFLQQS------FSSSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~~~------~~~~~~P~i~v~ 108 (109)
+++ +++.||+..- .....+|++.|.
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va 533 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVA 533 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhccCCceEEEe
Confidence 888 6678887632 344789998875
No 282
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.61 E-value=2.2e-07 Score=68.50 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=54.5
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCC-Cc----------ccc---cceeeEEE----EEEEeCCeEEEEEEEeCCC
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYI-ES----------YIS---TIGVDFKI----RTVEQDGKTIKLQIWDTAG 66 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~-~~----------~~~---~~~~~~~~----~~~~~~~~~~~~~i~D~~g 66 (109)
.+...+|+++|..++|||||+.+++...-. .. +.+ ..+.+... ......+....+.+.|+||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 455678999999999999999999753211 00 000 00111111 1112233457789999999
Q ss_pred ccccccchhhhhcCCcEEEE
Q 033918 67 QERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 67 ~~~~~~~~~~~~~~~~~iv~ 86 (109)
+..+.......++.+|++++
T Consensus 97 ~~df~~~~~~~l~~~D~avl 116 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIV 116 (731)
T ss_pred ccChHHHHHHHHHhcCEEEE
Confidence 99988777888999999888
No 283
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.60 E-value=2.9e-07 Score=55.72 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=36.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCC
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (109)
....+++++|.+|+|||||++.+.+..... .....+.......+..+ ..+.+.|+||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccceEEEEec---CCEEEEECCC
Confidence 346789999999999999999998765211 11111211222223332 2478999998
No 284
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=1.6e-07 Score=66.37 Aligned_cols=100 Identities=15% Similarity=0.150 Sum_probs=72.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
.-=|.+.|.-..|||||+-.|...................-+++.... -.++|.|||||..|..++.+-..-+|.+++
T Consensus 153 pPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLV 231 (683)
T KOG1145|consen 153 PPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVLV 231 (683)
T ss_pred CCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEEE
Confidence 345789999999999999999876654322222222222333444433 568899999999999999999999999998
Q ss_pred ------ecccchhhhccC-CCCCCEEEee
Q 033918 87 ------GDLNSFLQQSFS-SSSTPFCLFL 108 (109)
Q Consensus 87 ------~~~~s~~~~~~~-~~~~P~i~v~ 108 (109)
..+++.+.+.+. +.+.|+|+.+
T Consensus 232 VAadDGVmpQT~EaIkhAk~A~VpiVvAi 260 (683)
T KOG1145|consen 232 VAADDGVMPQTLEAIKHAKSANVPIVVAI 260 (683)
T ss_pred EEccCCccHhHHHHHHHHHhcCCCEEEEE
Confidence 445677776644 4699999876
No 285
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=1.6e-07 Score=65.51 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=52.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEE--EEEEeCCeEEEEEEEeCCCccc--------c-ccch
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKI--RTVEQDGKTIKLQIWDTAGQER--------F-RTIT 74 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~~--------~-~~~~ 74 (109)
+..++|+++|.||||||||+|.|...+. .-..|..|.+... ..+++++ +.+.+.||.|--+ . -...
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~dr-sIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA 342 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDR-SIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERA 342 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCc-eEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHH
Confidence 3468999999999999999999998763 2233434433333 3444544 6778999998422 1 1122
Q ss_pred hhhhcCCcEEEE
Q 033918 75 SSYYRGAHGIIV 86 (109)
Q Consensus 75 ~~~~~~~~~iv~ 86 (109)
......||++++
T Consensus 343 ~k~~~~advi~~ 354 (531)
T KOG1191|consen 343 RKRIERADVILL 354 (531)
T ss_pred HHHHhhcCEEEE
Confidence 455677999998
No 286
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.51 E-value=1.9e-07 Score=56.93 Aligned_cols=58 Identities=22% Similarity=0.160 Sum_probs=32.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC------cccccceeeEEEEEEEeCCeEEEEEEEeCCCccc
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIE------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (109)
-.++++|++|||||||+|.+....-.. ........+.....+.+++. ..+.|+||-..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~ 99 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRS 99 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCc
Confidence 468999999999999999998763211 11111111223344444332 46889998543
No 287
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.51 E-value=8.7e-07 Score=62.09 Aligned_cols=81 Identities=17% Similarity=0.160 Sum_probs=54.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC--CCCC------------------------ccc---ccceeeEEEEEEEeCCeE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYIE------------------------SYI---STIGVDFKIRTVEQDGKT 56 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~--~~~~------------------------~~~---~~~~~~~~~~~~~~~~~~ 56 (109)
...++|+++|..++|||||+.+++.. .... +.. ...+.........+....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 44689999999999999999998751 1000 000 011222222222333345
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
..+.|.|+||+.+|.......+..+|++++
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ail 114 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAIL 114 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEE
Confidence 678999999999988777777888999888
No 288
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.49 E-value=8.2e-07 Score=60.06 Aligned_cols=61 Identities=25% Similarity=0.516 Sum_probs=45.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCc----------ccccceeeEEEEEEEeCCeEEEEEEEeCCC
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIES----------YISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (109)
...+.|.++|++|.|||||++.+++...... ..++.....+...+.-++..+.+.+.|++|
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpG 91 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPG 91 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCC
Confidence 4689999999999999999999987632211 234444555545555567788999999998
No 289
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=8e-07 Score=60.30 Aligned_cols=61 Identities=25% Similarity=0.477 Sum_probs=43.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCc---------ccccceeeEEEEEEEeCCeEEEEEEEeCCC
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIES---------YISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (109)
...|.+.++|++|.|||||+|.|+...+... ...+..+..+...+.-++..+.+++.||+|
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPG 88 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPG 88 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCC
Confidence 4579999999999999999999887644321 122334333433444456688999999998
No 290
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.46 E-value=2.3e-06 Score=52.08 Aligned_cols=100 Identities=28% Similarity=0.346 Sum_probs=57.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCC-C------------------
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA-G------------------ 66 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-g------------------ 66 (109)
...+||++-|.|||||||++.++.+.- ....-.-.| +....+.-+++..-+.+.|+. |
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L-~~~g~kvgG--f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL-REKGYKVGG--FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH-HhcCceeee--EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 356899999999999999999976432 111111122 344444555555556666654 1
Q ss_pred ------cc-ccccchhhhhcCCcEEEE-------ecccchhh-hc-cCCCCCCEEEee
Q 033918 67 ------QE-RFRTITSSYYRGAHGIIV-------GDLNSFLQ-QS-FSSSSTPFCLFL 108 (109)
Q Consensus 67 ------~~-~~~~~~~~~~~~~~~iv~-------~~~~s~~~-~~-~~~~~~P~i~v~ 108 (109)
.+ ......+.++..||++++ .....|-. ++ .-.+..|++..+
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatl 137 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATL 137 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEE
Confidence 11 123445666778999999 22223433 21 123677766654
No 291
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.45 E-value=1.7e-06 Score=62.91 Aligned_cols=61 Identities=23% Similarity=0.371 Sum_probs=39.5
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCccc--ccceeeEEEEEEEeCCeEEEEEEEeCCCcc
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYI--STIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (109)
-++.++|+++|.+|+||||++|.+++.+...... +... .........++ ..+.++||+|-.
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TT-r~~ei~~~idG--~~L~VIDTPGL~ 177 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTT-SVQEIEGLVQG--VKIRVIDTPGLK 177 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCce-EEEEEEEEECC--ceEEEEECCCCC
Confidence 3467899999999999999999999876332211 1111 11111222333 468899999964
No 292
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.44 E-value=9.3e-07 Score=57.11 Aligned_cols=61 Identities=28% Similarity=0.494 Sum_probs=44.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCC---------CcccccceeeEEEEEEEeCCeEEEEEEEeCCC
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI---------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (109)
.+.|+|.++|.+|.|||||++.+...+.. ..+..|.++......+.-++.+.++.+.|++|
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPG 113 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPG 113 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCC
Confidence 46899999999999999999998643321 23444555444444555567788999999998
No 293
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.42 E-value=3.1e-06 Score=58.72 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.+.|.++|+.++|||||+++|.+.
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q 40 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMEL 40 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhh
Confidence 578999999999999999999877
No 294
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.38 E-value=1.7e-06 Score=59.13 Aligned_cols=57 Identities=19% Similarity=0.315 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC----cccccceeeEEEEEEEeCCeEEEEEEEeCCCcc
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIE----SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (109)
.++.++|.+|||||||++++....... ...+..+.+.....+..++. +.++|+||-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCC
Confidence 489999999999999999998743211 12222232233333344222 5799999953
No 295
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.38 E-value=2.1e-06 Score=60.24 Aligned_cols=80 Identities=15% Similarity=0.161 Sum_probs=54.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCC-CC-------------------------cccc---cceeeEEEEEEEeCCeEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IE-------------------------SYIS---TIGVDFKIRTVEQDGKTI 57 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~-~~-------------------------~~~~---~~~~~~~~~~~~~~~~~~ 57 (109)
..++|+++|..++|||||+-+++..-- .. +..+ ..+.........+.....
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 358899999999999999999864210 00 0000 011122222223334456
Q ss_pred EEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 58 KLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 58 ~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
.+.+.|++||++|.......+..+|++++
T Consensus 86 ~i~liDtPGh~df~~~~~~g~~~aD~aIl 114 (447)
T PLN00043 86 YCTVIDAPGHRDFIKNMITGTSQADCAVL 114 (447)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhccEEEE
Confidence 78999999999998888888899999988
No 296
>PRK12289 GTPase RsgA; Reviewed
Probab=98.38 E-value=9.9e-07 Score=60.06 Aligned_cols=57 Identities=25% Similarity=0.253 Sum_probs=34.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC--cccc----cceeeEEEEEEEeCCeEEEEEEEeCCCccc
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIE--SYIS----TIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (109)
.++++|.+|||||||+|++....-.. ..+. ....+.....+.+.+. ..+.||||-..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence 37999999999999999998654221 1111 1112233334444332 26899999543
No 297
>PRK13796 GTPase YqeH; Provisional
Probab=98.35 E-value=1.3e-06 Score=59.81 Aligned_cols=56 Identities=23% Similarity=0.288 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC----cccccceeeEEEEEEEeCCeEEEEEEEeCCCc
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIE----SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (109)
.++.++|.+|||||||+|++....... ...+..|.+.....+.+++. ..++||||-
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence 479999999999999999998543111 11222332333334444333 469999995
No 298
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.32 E-value=1.8e-06 Score=56.12 Aligned_cols=56 Identities=25% Similarity=0.220 Sum_probs=34.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC--cccc----cceeeEEEEEEEeCCeEEEEEEEeCCCcc
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIE--SYIS----TIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (109)
-.++++|.+|||||||++++....... .... ..+.+.....+.+.+ -.++|+||--
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~ 182 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFN 182 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCcc
Confidence 368899999999999999998754221 1111 111222333334433 2689999953
No 299
>PRK12288 GTPase RsgA; Reviewed
Probab=98.32 E-value=2.4e-06 Score=58.14 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=34.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCC--cccc----cceeeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 033918 11 LLLIGDSGVGKSCLLLRFADDSYIE--SYIS----TIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (109)
++++|.+|||||||+|+|....... ..+. ....+....-+.+.+. ..+.|+||--.+
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 7899999999999999998664321 1111 1111223333344322 348999995443
No 300
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.28 E-value=5.2e-06 Score=53.29 Aligned_cols=73 Identities=18% Similarity=0.262 Sum_probs=44.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
.....|+++|.+|+|||+|++.+....-........|. + .+.. ....++.++|++|.- ..+ ....+.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i~~-~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TVVT-GKKRRLTFIECPNDI--NAM-IDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EEEe-cCCceEEEEeCCchH--HHH-HHHHHhcCEEE
Confidence 34577999999999999999998764211111111121 1 1111 134567899999853 222 23457789988
Q ss_pred E
Q 033918 86 V 86 (109)
Q Consensus 86 ~ 86 (109)
+
T Consensus 109 l 109 (225)
T cd01882 109 L 109 (225)
T ss_pred E
Confidence 8
No 301
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.25 E-value=6e-06 Score=53.00 Aligned_cols=79 Identities=18% Similarity=0.127 Sum_probs=48.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC--CCCCc---ccccceeeEEEEEEEeCCeEEEEEEEeCCCcccc------ccchh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADD--SYIES---YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF------RTITS 75 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~ 75 (109)
...-|+++|++++|||+|+|++.+. .|... ..-|.|.-........ +....+.+.|++|.... ...+.
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHH
Confidence 3566899999999999999999988 55321 1223332222111111 12467899999996432 22333
Q ss_pred hhhcC--CcEEEE
Q 033918 76 SYYRG--AHGIIV 86 (109)
Q Consensus 76 ~~~~~--~~~iv~ 86 (109)
..+.. ++++++
T Consensus 85 ~~l~~llss~~i~ 97 (224)
T cd01851 85 FALATLLSSVLIY 97 (224)
T ss_pred HHHHHHHhCEEEE
Confidence 44444 788888
No 302
>COG2262 HflX GTPases [General function prediction only]
Probab=98.20 E-value=1.2e-05 Score=55.31 Aligned_cols=100 Identities=19% Similarity=0.192 Sum_probs=61.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcc---------ccccchhhh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE---------RFRTITSSY 77 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~ 77 (109)
....|.++|..|+|||||+|++.+.....+.......+...+.+.+.+ ...+.+-||-|.- .|+.. ...
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksT-LEE 268 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKST-LEE 268 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHH-HHH
Confidence 357899999999999999999986554322222222334445556654 2456788998831 22222 233
Q ss_pred hcCCcEEEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 78 YRGAHGIIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 78 ~~~~~~iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
...||.++. +++..-+++. ....++|+|+|+
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~ 311 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVL 311 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 457899888 5554433322 233568999886
No 303
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.18 E-value=1.1e-05 Score=55.20 Aligned_cols=79 Identities=15% Similarity=-0.007 Sum_probs=48.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC-CCcccccceeeEEEEEEEeCCe---------------EEEEEEEeCCCccc--
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQER-- 69 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~-- 69 (109)
.+++-++|.|++|||||.+.+...+. .....|....+-+...+.+.+. ...+.+.|.+|--.
T Consensus 2 ~lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 2 GLSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred CceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 37899999999999999999987764 3222222211222233333331 24678999998421
Q ss_pred --ccc---chhhhhcCCcEEEE
Q 033918 70 --FRT---ITSSYYRGAHGIIV 86 (109)
Q Consensus 70 --~~~---~~~~~~~~~~~iv~ 86 (109)
-.. ....-++.+|+++.
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~h 103 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQH 103 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEE
Confidence 112 23344677899988
No 304
>PRK00098 GTPase RsgA; Reviewed
Probab=98.17 E-value=6.6e-06 Score=54.92 Aligned_cols=24 Identities=50% Similarity=0.564 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
..++++|.+|||||||++.+.+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 358899999999999999998654
No 305
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.17 E-value=1.2e-06 Score=62.14 Aligned_cols=96 Identities=25% Similarity=0.283 Sum_probs=67.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
++|+-++|..++|||+|++|++.+.+.....|.-+ .+.+.+..+++...+.+.|.+|....+. ....++++++|
T Consensus 30 elk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~~aQf---t~wvdavIfvf~ 104 (749)
T KOG0705|consen 30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHPDAQF---CQWVDAVVFVFS 104 (749)
T ss_pred hhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCchhhh---hhhccceEEEEE
Confidence 68999999999999999999999998777666544 3445566677777888899887432221 11224555555
Q ss_pred -ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 -GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 -~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
.|..+|+.+. ....++|.++++
T Consensus 105 ~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvg 136 (749)
T KOG0705|consen 105 VEDEQSFQAVQALAHEMSSYRNISDLPLILVG 136 (749)
T ss_pred eccccCHHHHHHHHhhcccccccccchHHhhc
Confidence 7788888754 224577777664
No 306
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.14 E-value=2.9e-06 Score=49.57 Aligned_cols=72 Identities=25% Similarity=0.364 Sum_probs=47.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCC----ccccccchhhhhcCCcEEE
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG----QERFRTITSSYYRGAHGII 85 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----~~~~~~~~~~~~~~~~~iv 85 (109)
|++++|..|+|||+|.+.+.+... .|..|...+++.+ -..|++| +.++.........++++++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceeeccCc-----------cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 789999999999999999887653 4455555445422 1346666 3334444455667889888
Q ss_pred E----ecccchhh
Q 033918 86 V----GDLNSFLQ 94 (109)
Q Consensus 86 ~----~~~~s~~~ 94 (109)
+ ++++|-..
T Consensus 70 ~v~~and~~s~f~ 82 (148)
T COG4917 70 YVHAANDPESRFP 82 (148)
T ss_pred eeecccCccccCC
Confidence 8 55555444
No 307
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.13 E-value=1.4e-05 Score=54.23 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=27.8
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
...+.++|.+||-.-+.-|.+++.++++++|
T Consensus 194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF 224 (354)
T KOG0082|consen 194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIF 224 (354)
T ss_pred CCceEEEeCCCcHHHhhhHHHhhcCCCEEEE
Confidence 3678899999987778899999999999999
No 308
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.13 E-value=6.8e-06 Score=62.58 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCe-----------E-----EEEEEEeCCCccccccchhhhhcCCc
Q 033918 19 VGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK-----------T-----IKLQIWDTAGQERFRTITSSYYRGAH 82 (109)
Q Consensus 19 vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~~~~i~D~~g~~~~~~~~~~~~~~~~ 82 (109)
++||||+.++.+.+......-....+.....+..+.. . -.+.||||+|++.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 5699999999977654433332222222222222210 0 12799999999999888888888899
Q ss_pred EEEE----ec---ccchhhhcc-CCCCCCEEEee
Q 033918 83 GIIV----GD---LNSFLQQSF-SSSSTPFCLFL 108 (109)
Q Consensus 83 ~iv~----~~---~~s~~~~~~-~~~~~P~i~v~ 108 (109)
++++ ++ +++++.+.. ...++|+++++
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVVi 585 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAINILRQYKTPFVVAA 585 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEE
Confidence 9998 22 455555432 22468988875
No 309
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.12 E-value=8e-06 Score=54.30 Aligned_cols=58 Identities=26% Similarity=0.255 Sum_probs=35.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC------CCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS------YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (109)
-.+++|.+|||||||+|++.... ..+........+....-+.+++. =.+.||||-..+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCcc
Confidence 57899999999999999997532 11222222233344455555322 247899985444
No 310
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.12 E-value=1.1e-05 Score=53.64 Aligned_cols=60 Identities=28% Similarity=0.283 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcc-cc-----cceeeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESY-IS-----TIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (109)
-.++++|++|+|||||++.+.+....... .+ ..+.+.....+...+. ..++|+||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 46899999999999999999875432211 11 1111222233333322 3589999975443
No 311
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.11 E-value=5.5e-06 Score=58.32 Aligned_cols=56 Identities=21% Similarity=0.218 Sum_probs=41.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCc
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (109)
.+.|-+||-|||||||.||.+.+.+- -..+.|.|-+-+=+++.+... +.+.|++|.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~Kk-VsVS~TPGkTKHFQTi~ls~~---v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKK-VSVSSTPGKTKHFQTIFLSPS---VCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCce-eeeecCCCCcceeEEEEcCCC---ceecCCCCc
Confidence 58899999999999999999999874 334555554344355555443 778999984
No 312
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.05 E-value=1.5e-05 Score=49.07 Aligned_cols=52 Identities=27% Similarity=0.503 Sum_probs=31.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 64 (109)
||++-|++|+||||++++++..- .....+..| +.+....-++...-+.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l-~~~~~~v~G--f~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL-KKKGLPVGG--FYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH-HHTCGGEEE--EEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHh-hccCCccce--EEeecccCCCceEEEEEEEC
Confidence 68999999999999999987432 111223334 34344444444555555555
No 313
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.00 E-value=2.5e-05 Score=51.01 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=47.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCc------cccc-cchhhhhcC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ------ERFR-TITSSYYRG 80 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~------~~~~-~~~~~~~~~ 80 (109)
.-+|+++|-|+||||||+..+...............+..+..+.+++ ..+++.|.||- .+-+ ...-...+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeec
Confidence 46899999999999999999876653221111112223334555655 45779999972 1111 111233467
Q ss_pred CcEEEE
Q 033918 81 AHGIIV 86 (109)
Q Consensus 81 ~~~iv~ 86 (109)
||.+++
T Consensus 140 aDlilM 145 (364)
T KOG1486|consen 140 ADLILM 145 (364)
T ss_pred ccEEEE
Confidence 899998
No 314
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=2.8e-05 Score=53.04 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=47.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEe------------C----CeEEEEEEEeCCCc----
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ------------D----GKTIKLQIWDTAGQ---- 67 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~----~~~~~~~i~D~~g~---- 67 (109)
.+++-++|.||||||||.+.++.........|...++-+.....+ . .....++++|..|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 578999999999999999999877643222222111111111110 0 12457889998873
Q ss_pred cccccchhhh---hcCCcEEEE
Q 033918 68 ERFRTITSSY---YRGAHGIIV 86 (109)
Q Consensus 68 ~~~~~~~~~~---~~~~~~iv~ 86 (109)
.+-+-+-+.+ ++++|+++-
T Consensus 82 s~GeGLGNkFL~~IRevdaI~h 103 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIH 103 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEE
Confidence 2333455555 467888886
No 315
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=3.5e-05 Score=53.66 Aligned_cols=81 Identities=16% Similarity=0.182 Sum_probs=57.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh-CCCC-----------C--------cccccceeeEEEEEEEeCCeEEEEEEEeCC
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFAD-DSYI-----------E--------SYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~-~~~~-----------~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 65 (109)
.+.-..++|-.|.+|||||...++- +..+ . +.....|+...+-.+..+.....+++.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 3456789999999999999999751 1100 0 112223555555555555566788999999
Q ss_pred CccccccchhhhhcCCcEEEE
Q 033918 66 GQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 66 g~~~~~~~~~~~~~~~~~iv~ 86 (109)
||+.|..-.-.-+..+|..++
T Consensus 90 GHeDFSEDTYRtLtAvDsAvM 110 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVM 110 (528)
T ss_pred CccccchhHHHHHHhhheeeE
Confidence 999999877777777888877
No 316
>PRK08118 topology modulation protein; Reviewed
Probab=97.94 E-value=1e-05 Score=49.72 Aligned_cols=22 Identities=41% Similarity=0.746 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
||+++|++|+|||||++.+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
No 317
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.93 E-value=4.2e-05 Score=50.63 Aligned_cols=62 Identities=26% Similarity=0.414 Sum_probs=43.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeE--EEEEEEe--CCeEEEEEEEeCCC
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDF--KIRTVEQ--DGKTIKLQIWDTAG 66 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~i~D~~g 66 (109)
..+.|+|+.+|..|.|||||+..+.+.+|.....+.....+ ...+..+ .+..+++.+.|+.|
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 45689999999999999999999999887543333222112 1122222 35578899999987
No 318
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=4e-05 Score=52.83 Aligned_cols=88 Identities=20% Similarity=0.209 Sum_probs=54.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC--CCCC------------ccc----------cc-----ceeeEEEEEEEeCCeEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADD--SYIE------------SYI----------ST-----IGVDFKIRTVEQDGKTI 57 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~--~~~~------------~~~----------~~-----~~~~~~~~~~~~~~~~~ 57 (109)
..++++++|...+|||||+-|++.. .+.+ ... .+ .|.+.......+.....
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 3689999999999999999998632 1110 000 00 11112222222333346
Q ss_pred EEEEEeCCCccccccchhhhhcCCcEEEE---ecccchhh
Q 033918 58 KLQIWDTAGQERFRTITSSYYRGAHGIIV---GDLNSFLQ 94 (109)
Q Consensus 58 ~~~i~D~~g~~~~~~~~~~~~~~~~~iv~---~~~~s~~~ 94 (109)
.+.|.|++|+..|..-.-.-...||+.++ ++...|+.
T Consensus 86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~ 125 (428)
T COG5256 86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEA 125 (428)
T ss_pred eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCcccc
Confidence 78999999987776655555667888888 44455555
No 319
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=8.2e-05 Score=54.85 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=68.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhC--CCC--Ccc------------cccceeeEEEEEEEeCCe-EEEEEEEeCCCc
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADD--SYI--ESY------------ISTIGVDFKIRTVEQDGK-TIKLQIWDTAGQ 67 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~--~~~--~~~------------~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~ 67 (109)
.+...+|.++|.-.+||||+..+++.. ... .+. ....|++..+...++..+ ...+++.|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 456789999999999999999998732 111 111 111333444444444444 488999999999
Q ss_pred cccccchhhhhcCCcEEEE--ecccchhh-----hc-cCCCCCCEEEee
Q 033918 68 ERFRTITSSYYRGAHGIIV--GDLNSFLQ-----QS-FSSSSTPFCLFL 108 (109)
Q Consensus 68 ~~~~~~~~~~~~~~~~iv~--~~~~s~~~-----~~-~~~~~~P~i~v~ 108 (109)
-.|.......++-+|++++ +..+-.+. .. ....++|.++++
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fi 135 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFV 135 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEE
Confidence 9999888888888888887 22222211 11 233578888775
No 320
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=5.5e-05 Score=55.22 Aligned_cols=106 Identities=19% Similarity=0.264 Sum_probs=68.5
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCccccc---------------ceeeEEE--EEE---EeCCeEEEEEEE
Q 033918 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYIST---------------IGVDFKI--RTV---EQDGKTIKLQIW 62 (109)
Q Consensus 3 ~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~---------------~~~~~~~--~~~---~~~~~~~~~~i~ 62 (109)
..++...+|.++|.-+.|||+|+..+.....+.-.... .|..... .++ ...++...+++.
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 34556789999999999999999998866543221111 0111111 111 124567788999
Q ss_pred eCCCccccccchhhhhcCCcEEEE----ecccchhh--hc--cCCCCCCEEEee
Q 033918 63 DTAGQERFRTITSSYYRGAHGIIV----GDLNSFLQ--QS--FSSSSTPFCLFL 108 (109)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~~~iv~----~~~~s~~~--~~--~~~~~~P~i~v~ 108 (109)
|++||-.+.......++.+|++++ .+--+++. +. ......|+++++
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vvi 256 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVI 256 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEE
Confidence 999999999888889999999998 22222322 11 123578888775
No 321
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.91 E-value=1.3e-05 Score=46.22 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.|++.|.+||||||+++.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998754
No 322
>PRK07261 topology modulation protein; Provisional
Probab=97.86 E-value=1.7e-05 Score=48.87 Aligned_cols=23 Identities=39% Similarity=0.638 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.||+++|.+|+|||||++.+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999997643
No 323
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.85 E-value=1.7e-05 Score=49.25 Aligned_cols=23 Identities=35% Similarity=0.725 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.||+++|+||+||||+++++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998765
No 324
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.85 E-value=2.3e-05 Score=50.00 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.++++|++|+|||||++++..-+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 58999999999999999987554
No 325
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.84 E-value=1.7e-05 Score=46.98 Aligned_cols=19 Identities=47% Similarity=0.732 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 033918 11 LLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~ 29 (109)
|+++|++|+||||+++++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999987
No 326
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.81 E-value=2.1e-05 Score=50.68 Aligned_cols=79 Identities=27% Similarity=0.399 Sum_probs=47.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCC-cccccceeeEEEEEEEeCCeEEEEEEEeCCCcccc-----ccchhhhhcC
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-----RTITSSYYRG 80 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~~ 80 (109)
+.-||++.|.+|+||||+-..+..+...- ...++..+++.--...+-+ ..-+.+||++|++.+ ......-+++
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 45799999999999999866655332111 1112111122212222222 356899999999843 2344566778
Q ss_pred CcEEEE
Q 033918 81 AHGIIV 86 (109)
Q Consensus 81 ~~~iv~ 86 (109)
.+++++
T Consensus 82 V~vli~ 87 (295)
T KOG3886|consen 82 VQVLIY 87 (295)
T ss_pred heeeee
Confidence 888887
No 327
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.77 E-value=7e-05 Score=50.67 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=49.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeC---------------CeEEEEEEEeCCCc----
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD---------------GKTIKLQIWDTAGQ---- 67 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~i~D~~g~---- 67 (109)
..+++-++|.||||||||.+.+.........-|...++-+.-.+.+. ..+..++++|..|.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 56799999999999999999999876554444433222222222221 12467899998863
Q ss_pred cccccchhhhh---cCCcEEEE
Q 033918 68 ERFRTITSSYY---RGAHGIIV 86 (109)
Q Consensus 68 ~~~~~~~~~~~---~~~~~iv~ 86 (109)
..-+-+-+.++ +.+|+++=
T Consensus 99 s~G~GLGN~FLs~iR~vDaifh 120 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFH 120 (391)
T ss_pred ccCcCchHHHHHhhhhccceeE
Confidence 22233444443 55677653
No 328
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.75 E-value=8.7e-05 Score=52.50 Aligned_cols=67 Identities=18% Similarity=0.405 Sum_probs=45.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeC--CeEEEEEEEeCCCccccccchhh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD--GKTIKLQIWDTAGQERFRTITSS 76 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~ 76 (109)
..-.|+++|+.++|||||+.+|.+.+ ...++.+.+|....+.-+ +....+.+|...|...+..+...
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~ 92 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKF 92 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcc
Confidence 35689999999999999999987544 445566766754433322 22356789988876555544443
No 329
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=7.5e-05 Score=55.08 Aligned_cols=98 Identities=20% Similarity=0.212 Sum_probs=67.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCccccc----ceeeEEEEE----------------EEeCCeEEEEEEEeCCC
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYIST----IGVDFKIRT----------------VEQDGKTIKLQIWDTAG 66 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~----~~~~~~~~~----------------~~~~~~~~~~~i~D~~g 66 (109)
+.-=|+++|.-.+|||-|+-.+.+.+........ .|-+|+... +.+. -+-+.|++|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvP----g~lvIdtpg 549 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVP----GLLVIDTPG 549 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCC----eeEEecCCC
Confidence 3556899999999999999998876544322222 222222111 1111 256789999
Q ss_pred ccccccchhhhhcCCcEEEE-------ecccchhhhc-cCCCCCCEEEee
Q 033918 67 QERFRTITSSYYRGAHGIIV-------GDLNSFLQQS-FSSSSTPFCLFL 108 (109)
Q Consensus 67 ~~~~~~~~~~~~~~~~~iv~-------~~~~s~~~~~-~~~~~~P~i~v~ 108 (109)
++.|..++.....-||.+|+ -++++++.++ .+..+.|+|+.|
T Consensus 550 hEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivAL 599 (1064)
T KOG1144|consen 550 HESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVAL 599 (1064)
T ss_pred chhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEee
Confidence 99999999999889999988 4445555544 256799999987
No 330
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.73 E-value=0.00025 Score=47.71 Aligned_cols=75 Identities=23% Similarity=0.298 Sum_probs=43.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCc----cccccchhhhhc---CC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ----ERFRTITSSYYR---GA 81 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~---~~ 81 (109)
.+=+||-||+|||||++.+...+.. ..|.-|. ..-...++.+++ ..++.+-|.||- .+-+-+-..|++ .|
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTT-L~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTT-LRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceee-eccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 3568999999999999999876632 2222211 111111223332 234889999973 233334444443 46
Q ss_pred cEEEE
Q 033918 82 HGIIV 86 (109)
Q Consensus 82 ~~iv~ 86 (109)
...+|
T Consensus 276 ~~l~f 280 (366)
T KOG1489|consen 276 KGLLF 280 (366)
T ss_pred ceEEE
Confidence 77776
No 331
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.73 E-value=5.1e-05 Score=46.11 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q 033918 11 LLLIGDSGVGKSCLLLRFADDSY 33 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~~~ 33 (109)
|+++|..++|||||++.|++.+.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~i 23 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPI 23 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-
T ss_pred CEEEcCCCCCHHHHHHHHHhccc
Confidence 78999999999999999998764
No 332
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.71 E-value=3.4e-05 Score=49.97 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 033918 11 LLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~~ 32 (109)
|+++|++|||||||++-+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999876543
No 333
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.71 E-value=2.5e-05 Score=47.51 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
||++.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999998754
No 334
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.69 E-value=0.00027 Score=41.95 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
--+++.|+.|+|||||++.+...
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35889999999999999998865
No 335
>PRK06217 hypothetical protein; Validated
Probab=97.67 E-value=4.7e-05 Score=47.31 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.+|+++|.+|+||||+++++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998754
No 336
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.67 E-value=8.7e-05 Score=50.17 Aligned_cols=71 Identities=15% Similarity=0.319 Sum_probs=48.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeC--CeEEEEEEEeCCCccccccchhhhhcC
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD--GKTIKLQIWDTAGQERFRTITSSYYRG 80 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (109)
..-.|+++|+.++|||||+.++.+.+ .+.+..+.+|....+.-+ +....+.+|-..|..-...+....+..
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~a 123 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPA 123 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccc
Confidence 35689999999999999999998765 444555555654443322 224567788888876666666655543
No 337
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.67 E-value=5.2e-05 Score=44.05 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 033918 11 LLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~ 31 (109)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998754
No 338
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.66 E-value=7e-05 Score=51.49 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=40.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCc
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (109)
...+++-++|-|||||||+++++...+. -...+..|.+..-+.+.++. .+.+.|.+|-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~-C~vg~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKA-CNVGNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhcc-ccCCCCccchhhhhheeccC---CceeccCCce
Confidence 4578999999999999999999988764 22233334334334444544 3789998873
No 339
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.65 E-value=6.4e-05 Score=43.49 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
-.++++|++|+|||++++.+...-
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 478999999999999999987654
No 340
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.65 E-value=4.6e-05 Score=51.66 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 033918 11 LLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~~ 32 (109)
++++|++||||||+++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999986543
No 341
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.64 E-value=7.3e-05 Score=39.26 Aligned_cols=21 Identities=33% Similarity=0.620 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 033918 11 LLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~ 31 (109)
|++.|.+|+|||++++.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998644
No 342
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.61 E-value=6.3e-05 Score=46.38 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+||||+++++...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999997653
No 343
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.61 E-value=6.8e-05 Score=46.69 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
-.++++|++|+||||+++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999998654
No 344
>PRK03839 putative kinase; Provisional
Probab=97.61 E-value=6.2e-05 Score=46.51 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
+|+++|.+|+||||+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998643
No 345
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.61 E-value=0.00049 Score=45.57 Aligned_cols=58 Identities=26% Similarity=0.181 Sum_probs=37.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccc-cceeeEEEEEEEeCCeEEEEEEEeCCC
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYIS-TIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (109)
....+++++|.+||||++|++.+...+....... ..+.......+.+ .-.+.+.|.+|
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG 192 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPG 192 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCC
Confidence 4568899999999999999999887654332222 2231111122222 34577899998
No 346
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.61 E-value=6.6e-05 Score=44.19 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 6899999999999999987654
No 347
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.60 E-value=7.2e-05 Score=44.24 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
.|+++|++|+|||++++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998763
No 348
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.60 E-value=7.3e-05 Score=48.53 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=22.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
+..++++++|.+|+|||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999998754
No 349
>PRK14531 adenylate kinase; Provisional
Probab=97.60 E-value=7.2e-05 Score=46.49 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
+.+|+++|+||+||||+.+++..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998853
No 350
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.59 E-value=9.8e-05 Score=46.80 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=22.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
+....-++++|++|+||||+++++...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 345677889999999999999998754
No 351
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.59 E-value=6.5e-05 Score=48.29 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
-++++|++|+|||||++.+-+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47999999999999999875443
No 352
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.57 E-value=6.1e-05 Score=48.13 Aligned_cols=19 Identities=53% Similarity=0.649 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 033918 11 LLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~ 29 (109)
-+++|++|||||||++.+.
T Consensus 36 TAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 4799999999999999875
No 353
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.56 E-value=8.6e-05 Score=44.16 Aligned_cols=21 Identities=52% Similarity=0.844 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 033918 11 LLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~ 31 (109)
++++|++|+||||+++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999998754
No 354
>PRK14532 adenylate kinase; Provisional
Probab=97.56 E-value=8.1e-05 Score=46.27 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
++|+++|+||+||||+++++..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 355
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.56 E-value=9.4e-05 Score=44.24 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
.|.++|+.|+|||||++.++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999874
No 356
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.55 E-value=7.4e-05 Score=50.95 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 033918 11 LLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~~ 32 (109)
++++|++||||||+++.+-+=.
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6799999999999999886433
No 357
>PRK13949 shikimate kinase; Provisional
Probab=97.54 E-value=0.0001 Score=45.34 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
+|+++|.+|+||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998764
No 358
>PRK14530 adenylate kinase; Provisional
Probab=97.53 E-value=9.2e-05 Score=47.12 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 033918 9 FKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~ 29 (109)
.+|+++|.+|+||||+++.+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999985
No 359
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.52 E-value=0.00043 Score=48.84 Aligned_cols=79 Identities=16% Similarity=0.268 Sum_probs=56.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCCcc------------cccceeeEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDS--YIESY------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI 73 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 73 (109)
.-+|++|-.-..|||||...++... |.+.. ....|++.-++..-+......++|.||+||..|.-.
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 4578999888899999999987532 21110 111233333333334445588999999999999988
Q ss_pred hhhhhcCCcEEEE
Q 033918 74 TSSYYRGAHGIIV 86 (109)
Q Consensus 74 ~~~~~~~~~~iv~ 86 (109)
-..-+...|++++
T Consensus 85 VERvl~MVDgvlL 97 (603)
T COG1217 85 VERVLSMVDGVLL 97 (603)
T ss_pred hhhhhhhcceEEE
Confidence 8888889999998
No 360
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.52 E-value=9.7e-05 Score=45.51 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+||||+++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999764
No 361
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.52 E-value=0.00012 Score=46.24 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
+++.++|+.|+||||+++++...
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999998754
No 362
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.51 E-value=0.00011 Score=45.99 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.=|+++|++|+||||++++++..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34899999999999999999865
No 363
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.51 E-value=0.00016 Score=45.81 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=21.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
+...-|.++|++|+|||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999875
No 364
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.50 E-value=0.0001 Score=47.67 Aligned_cols=21 Identities=43% Similarity=0.631 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 489999999999999999865
No 365
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.50 E-value=0.0001 Score=42.64 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 033918 11 LLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~ 31 (109)
|++.|.+||||||+++.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998654
No 366
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.50 E-value=0.00011 Score=46.09 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 033918 11 LLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~ 31 (109)
|.+.|++|+|||||++.+...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999998653
No 367
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.49 E-value=0.00011 Score=45.40 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 033918 9 FKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~ 29 (109)
-.|+++|.+|+||||+++++.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999999986
No 368
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.48 E-value=0.00029 Score=49.82 Aligned_cols=82 Identities=11% Similarity=0.060 Sum_probs=50.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCC---CCCcc--ccc--ceeeEEEE----------EE-EeCC------------
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS---YIESY--IST--IGVDFKIR----------TV-EQDG------------ 54 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~---~~~~~--~~~--~~~~~~~~----------~~-~~~~------------ 54 (109)
.+-.++|.++|.-..|||||+..|.+-. +.++- --| .|+..... .+ ....
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 3557899999999999999999998532 11110 001 11110000 00 0000
Q ss_pred ----eEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 55 ----KTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 55 ----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
....+.|.|+||++.|-......+..+|++++
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alL 146 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALL 146 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEE
Confidence 01357899999999887666666778998888
No 369
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.47 E-value=0.00013 Score=41.74 Aligned_cols=21 Identities=43% Similarity=0.744 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 033918 9 FKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~ 29 (109)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 458999999999999999976
No 370
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.47 E-value=0.00014 Score=45.18 Aligned_cols=22 Identities=32% Similarity=0.298 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~ 29 (109)
.-.++++|++|+|||||++.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3478999999999999999875
No 371
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.46 E-value=0.00012 Score=44.98 Aligned_cols=23 Identities=48% Similarity=0.665 Sum_probs=16.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.--+++.|++|+|||+|++++..
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998763
No 372
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.45 E-value=0.00019 Score=36.95 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
-.++.|+.|+||||++..+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999988754
No 373
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.45 E-value=0.00019 Score=45.38 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
....|.+.|++|+|||||++.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999865
No 374
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.44 E-value=0.00014 Score=42.37 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
--+++.|++|+|||++++++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHH
Confidence 45789999999999999999765
No 375
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.44 E-value=0.00014 Score=45.71 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.--|+++|++|+|||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345899999999999999998764
No 376
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.44 E-value=0.00014 Score=47.70 Aligned_cols=21 Identities=38% Similarity=0.476 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
-++++|+.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 368999999999999999875
No 377
>PRK00625 shikimate kinase; Provisional
Probab=97.43 E-value=0.00015 Score=44.82 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
+|+++|.+|+||||+.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998853
No 378
>PRK02496 adk adenylate kinase; Provisional
Probab=97.43 E-value=0.00017 Score=44.77 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.|++++|++|+||||+++.+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 379
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.43 E-value=0.00015 Score=46.79 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.+||+++|+||+||||+++++..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999854
No 380
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.42 E-value=0.00017 Score=42.11 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
...+++.|++|+|||++++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999987653
No 381
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.42 E-value=0.00013 Score=44.36 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 033918 11 LLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~ 31 (109)
|+++|++|+||||+++.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999997644
No 382
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.41 E-value=0.00015 Score=45.12 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
+|+++|.+|+||||+++.+...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998643
No 383
>PRK08233 hypothetical protein; Provisional
Probab=97.41 E-value=0.00017 Score=44.34 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.-|++.|.+|+||||+++++...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 56788899999999999998743
No 384
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.00015 Score=45.91 Aligned_cols=20 Identities=40% Similarity=0.630 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 033918 10 KLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~ 29 (109)
-++++|++|||||||+|-.-
T Consensus 33 ~vv~lGpSGcGKTTLLnl~A 52 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIA 52 (259)
T ss_pred EEEEEcCCCccHHHHHHHHh
Confidence 47999999999999999764
No 385
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.0012 Score=47.45 Aligned_cols=88 Identities=20% Similarity=0.247 Sum_probs=56.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC--------------------CCCCcc---------cccceeeEEEEEEEeCCeEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADD--------------------SYIESY---------ISTIGVDFKIRTVEQDGKTI 57 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~--------------------~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 57 (109)
-.+.++++|.-.+||+||+.+++.. ++.-.| .-..|......+..++....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 4789999999999999999998632 100000 01112222333334444556
Q ss_pred EEEEEeCCCccccccchhhhhcCCcEEEE---ecccchhh
Q 033918 58 KLQIWDTAGQERFRTITSSYYRGAHGIIV---GDLNSFLQ 94 (109)
Q Consensus 58 ~~~i~D~~g~~~~~~~~~~~~~~~~~iv~---~~~~s~~~ 94 (109)
.+++.|.||+..|..-.-.-...||+.++ ++...|+.
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~ 295 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFES 295 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhh
Confidence 78999999988887655555566787777 66667766
No 386
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.41 E-value=0.00016 Score=44.76 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.-+.++|.+|+|||||+++++.
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHH
Confidence 3578999999999999999873
No 387
>PF05729 NACHT: NACHT domain
Probab=97.40 E-value=0.00017 Score=43.40 Aligned_cols=21 Identities=43% Similarity=0.727 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 033918 11 LLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~ 31 (109)
+++.|++|+|||+++.++...
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999998743
No 388
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.39 E-value=0.00014 Score=46.06 Aligned_cols=21 Identities=38% Similarity=0.680 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
||+++|+||+||||++.++..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 389
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.39 E-value=0.00019 Score=45.61 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5789999999999999998754
No 390
>PRK10646 ADP-binding protein; Provisional
Probab=97.38 E-value=0.0021 Score=39.03 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
-|++-|+-|+|||||.+.+...
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998754
No 391
>PRK13695 putative NTPase; Provisional
Probab=97.37 E-value=0.00022 Score=43.89 Aligned_cols=22 Identities=41% Similarity=0.774 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
+|+++.|++|+|||||+..+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998643
No 392
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.00065 Score=49.25 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=42.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcc-cccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESY-ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
.+-.+-++++|++|+|||||++.+...- .... ....| ...-+.++.-.+.+.+++.. ..++.. ..+-||.
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~-tk~ti~~i~G-----PiTvvsgK~RRiTflEcp~D--l~~miD-vaKIaDL 136 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRF-TKQTIDEIRG-----PITVVSGKTRRITFLECPSD--LHQMID-VAKIADL 136 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHH-HHhhhhccCC-----ceEEeecceeEEEEEeChHH--HHHHHh-HHHhhhe
Confidence 3446788999999999999999987432 1111 11111 11122345566888888832 333322 2345787
Q ss_pred EEE
Q 033918 84 IIV 86 (109)
Q Consensus 84 iv~ 86 (109)
+++
T Consensus 137 VlL 139 (1077)
T COG5192 137 VLL 139 (1077)
T ss_pred eEE
Confidence 777
No 393
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.36 E-value=0.00023 Score=43.91 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
..+|+++|.+|+||||+.+.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHH
Confidence 34799999999999999999864
No 394
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.36 E-value=0.00021 Score=45.34 Aligned_cols=22 Identities=36% Similarity=0.526 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998764
No 395
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.36 E-value=0.00021 Score=44.42 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
=.++++|++|+|||||++.+.+-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 36889999999999999987754
No 396
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.36 E-value=0.00021 Score=44.15 Aligned_cols=20 Identities=20% Similarity=0.551 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033918 11 LLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~ 30 (109)
|+++|+||+||||+++++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999864
No 397
>PF13173 AAA_14: AAA domain
Probab=97.35 E-value=0.00021 Score=41.86 Aligned_cols=23 Identities=43% Similarity=0.700 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
-+++.|+.+||||++++++....
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999988554
No 398
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.34 E-value=0.00024 Score=44.88 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.+.++|++|+|||||++.+.+-
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998754
No 399
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.34 E-value=0.00024 Score=44.77 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998764
No 400
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.33 E-value=0.00024 Score=44.31 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
..=+++.|++|+||||+++++....
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3457899999999999999998665
No 401
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.33 E-value=0.00021 Score=45.20 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999998754
No 402
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.00097 Score=47.20 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=22.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
++.-+|+++|+.|||||||+.-+++.
T Consensus 611 DmdSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 611 DMDSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred cccceeEEECCCCccHHHHHHHHhcC
Confidence 45779999999999999999988754
No 403
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.33 E-value=0.00024 Score=45.85 Aligned_cols=22 Identities=41% Similarity=0.462 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988654
No 404
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.33 E-value=0.00026 Score=44.79 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998764
No 405
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.33 E-value=0.00025 Score=45.64 Aligned_cols=22 Identities=45% Similarity=0.508 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998754
No 406
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.33 E-value=0.00025 Score=46.00 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 033918 11 LLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~~ 32 (109)
..++|++|+|||+|++.+.+..
T Consensus 37 ~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 37 LAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred EEEECCCCcCHHHHHHHHhccC
Confidence 5799999999999999987654
No 407
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.32 E-value=0.00026 Score=44.80 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998754
No 408
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.00032 Score=50.22 Aligned_cols=81 Identities=23% Similarity=0.350 Sum_probs=56.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCC-CCCcc------------cccceeeEEEEEEE---eCCeEEEEEEEeCCCccc
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDS-YIESY------------ISTIGVDFKIRTVE---QDGKTIKLQIWDTAGQER 69 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~-~~~~~------------~~~~~~~~~~~~~~---~~~~~~~~~i~D~~g~~~ 69 (109)
++..++.+|-.-..|||||+-|++..- +.... .-..|++...++.. .+++.+.+++.|||||-.
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 456788999888899999999987421 11110 01123333333222 235568999999999999
Q ss_pred cccchhhhhcCCcEEEE
Q 033918 70 FRTITSSYYRGAHGIIV 86 (109)
Q Consensus 70 ~~~~~~~~~~~~~~iv~ 86 (109)
|...-.+.+..|+++++
T Consensus 138 Fs~EVsRslaac~G~lL 154 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALL 154 (650)
T ss_pred ccceehehhhhcCceEE
Confidence 99988999999999998
No 409
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.32 E-value=0.00026 Score=44.07 Aligned_cols=22 Identities=45% Similarity=0.662 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988654
No 410
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.32 E-value=0.00026 Score=45.07 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988754
No 411
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.31 E-value=0.00027 Score=44.48 Aligned_cols=22 Identities=41% Similarity=0.439 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.+.++|++|+|||||++.+.+-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998764
No 412
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.31 E-value=0.00025 Score=45.14 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.+|+++|+||+||||+++.+..
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998753
No 413
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.31 E-value=0.00058 Score=40.00 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
--|++-|+-|+|||||.+.+...
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 34889999999999999998754
No 414
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.30 E-value=0.00031 Score=46.06 Aligned_cols=25 Identities=16% Similarity=0.458 Sum_probs=21.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
....++++.|++|+|||++++.+..
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHH
Confidence 4468899999999999999998753
No 415
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.30 E-value=0.00025 Score=45.51 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033918 11 LLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~ 30 (109)
|.+.|++|+|||||++.+.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 57899999999999998764
No 416
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.30 E-value=0.00028 Score=44.69 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.+.++|++|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988654
No 417
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.30 E-value=0.00027 Score=45.00 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999987654
No 418
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.30 E-value=0.00029 Score=44.59 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998764
No 419
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.30 E-value=0.00029 Score=44.64 Aligned_cols=22 Identities=45% Similarity=0.529 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999988754
No 420
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.29 E-value=0.00031 Score=43.79 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.-.++++|++|+||||+++.+.+-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 456899999999999999998754
No 421
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29 E-value=0.0003 Score=44.83 Aligned_cols=22 Identities=45% Similarity=0.508 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.+.++|++|+|||||++.+.+-
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998754
No 422
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.28 E-value=0.00031 Score=44.92 Aligned_cols=23 Identities=43% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58899999999999999887653
No 423
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.28 E-value=0.0003 Score=45.10 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998764
No 424
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.28 E-value=0.00031 Score=44.73 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998765
No 425
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.28 E-value=0.0003 Score=44.95 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998764
No 426
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.28 E-value=0.00028 Score=42.24 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 033918 11 LLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~ 31 (109)
+++.|.+|+||||+++.+...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 678999999999999998654
No 427
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.28 E-value=0.00032 Score=43.94 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999987653
No 428
>PRK07429 phosphoribulokinase; Provisional
Probab=97.27 E-value=0.00046 Score=46.79 Aligned_cols=30 Identities=40% Similarity=0.469 Sum_probs=24.9
Q ss_pred CCCCCCceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 1 ~~~~~~~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
|.......+-|.+.|++|+|||||++.+..
T Consensus 1 ~~~~~~~~~IIgI~G~SGSGKSTla~~L~~ 30 (327)
T PRK07429 1 MTSMPDRPVLLGVAGDSGCGKTTFLRGLAD 30 (327)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHh
Confidence 444456789999999999999999999864
No 429
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.27 E-value=0.00032 Score=44.67 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
=.++++|++|+|||||++.+.+-.
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999887643
No 430
>PHA00729 NTP-binding motif containing protein
Probab=97.27 E-value=0.00037 Score=44.86 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.+|++.|.+|+|||+|+.++...
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998653
No 431
>PRK13947 shikimate kinase; Provisional
Probab=97.27 E-value=0.00031 Score=42.91 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
+|+++|.+|+|||++.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999854
No 432
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.26 E-value=0.00033 Score=44.58 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.++++|++|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999987653
No 433
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.26 E-value=0.0003 Score=45.25 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5889999999999999988754
No 434
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.26 E-value=0.00033 Score=44.98 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999998754
No 435
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.26 E-value=0.00034 Score=44.28 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.+.++|++|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999887653
No 436
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.26 E-value=0.00033 Score=45.14 Aligned_cols=22 Identities=45% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998754
No 437
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.26 E-value=0.00036 Score=42.58 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999887553
No 438
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.26 E-value=0.00033 Score=45.78 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.++++|++|+|||||++.+.+-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999987643
No 439
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.25 E-value=0.00034 Score=44.43 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988754
No 440
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.25 E-value=0.00037 Score=43.09 Aligned_cols=22 Identities=45% Similarity=0.510 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998754
No 441
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.25 E-value=0.00034 Score=43.13 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
-|++.|.+|+||||+++.+...
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999998754
No 442
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.25 E-value=0.00035 Score=44.93 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 443
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.25 E-value=0.0005 Score=43.22 Aligned_cols=23 Identities=39% Similarity=0.414 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.++++|++|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999876543
No 444
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.24 E-value=0.00032 Score=44.45 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.+.++|++|+|||||++.+.+-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999988654
No 445
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.24 E-value=0.00034 Score=44.08 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 033918 11 LLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~ 31 (109)
+++.|++|+||||+++.+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999987654
No 446
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.24 E-value=0.00056 Score=46.42 Aligned_cols=54 Identities=26% Similarity=0.223 Sum_probs=32.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC-CCcccccceeeEEEEEEEeCCeEEEEEEEeCCC
Q 033918 11 LLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (109)
|-++|.||+|||||++.+..-+. ...|+-|.- .-+-..+.+. ..-++.+-|.||
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL-~PnLGvV~~~-~~~sfv~ADIPG 216 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTL-VPNLGVVRVD-GGESFVVADIPG 216 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccc-cCcccEEEec-CCCcEEEecCcc
Confidence 45899999999999999987653 233332211 1111122222 234578889887
No 447
>PRK06547 hypothetical protein; Provisional
Probab=97.24 E-value=0.00046 Score=42.65 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
....|++.|.+|+||||+++.+...
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567888899999999999998653
No 448
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0028 Score=46.56 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=23.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCC
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSY 33 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~ 33 (109)
...||++.|+.+.||||+++.++.++.
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~kl 134 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKL 134 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhh
Confidence 368999999999999999999987654
No 449
>PRK14528 adenylate kinase; Provisional
Probab=97.23 E-value=0.00036 Score=43.55 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 033918 9 FKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~ 29 (109)
.+|+++|+||+||||+++++.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la 22 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILC 22 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999985
No 450
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.23 E-value=0.00042 Score=43.86 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
....|.++|..|+|||||+++++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3577899999999999999998754
No 451
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.23 E-value=0.00036 Score=43.28 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
=++++|++|+||++++++++..
T Consensus 4 ~ivl~Gpsg~GK~~l~~~L~~~ 25 (183)
T PF00625_consen 4 PIVLVGPSGSGKSTLAKRLIQE 25 (183)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999999864
No 452
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.23 E-value=0.00039 Score=43.64 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
=.++++|++|+|||||++.+.+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999988764
No 453
>PRK14529 adenylate kinase; Provisional
Probab=97.23 E-value=0.00035 Score=44.97 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
++|+++|++|+||||+++++..
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~ 22 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKK 22 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998753
No 454
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.23 E-value=0.00036 Score=45.03 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998765
No 455
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.22 E-value=0.0004 Score=42.97 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999998754
No 456
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.22 E-value=0.00037 Score=44.65 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
=.++++|++|+|||||++.+.+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999987754
No 457
>PRK10908 cell division protein FtsE; Provisional
Probab=97.22 E-value=0.00039 Score=44.33 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998754
No 458
>PRK06762 hypothetical protein; Provisional
Probab=97.22 E-value=0.00044 Score=42.12 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.-|++.|.+|+||||+++.+...
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999988643
No 459
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.21 E-value=0.00038 Score=45.24 Aligned_cols=23 Identities=43% Similarity=0.521 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.++++|++|+|||||++.+.+-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999887653
No 460
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.21 E-value=0.0004 Score=44.75 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998754
No 461
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.21 E-value=0.00036 Score=45.58 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.+++.|++|+|||++++.+...
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4889999999999999998754
No 462
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.21 E-value=0.00042 Score=42.79 Aligned_cols=23 Identities=48% Similarity=0.677 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.++++|++|+|||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999987653
No 463
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.21 E-value=0.0004 Score=44.86 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+.
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999998764
No 464
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.21 E-value=0.00039 Score=45.54 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988764
No 465
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.21 E-value=0.0004 Score=44.84 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.+.++|++|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998764
No 466
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.21 E-value=0.00036 Score=43.72 Aligned_cols=19 Identities=42% Similarity=0.609 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 033918 11 LLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~ 29 (109)
|.+.|++|+|||||++++.
T Consensus 2 IgI~G~sgSGKTTla~~L~ 20 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLA 20 (194)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999999975
No 467
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.21 E-value=0.0004 Score=44.06 Aligned_cols=23 Identities=39% Similarity=0.325 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
=.++++|++|+|||||++.+.+-
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCC
Confidence 36799999999999999988754
No 468
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.21 E-value=0.00052 Score=44.64 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.-+++++|+.++||||+++.+.+..
T Consensus 26 ~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCeEEEEcCCCccHHHHHHHHhCCC
Confidence 4479999999999999999998765
No 469
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.21 E-value=0.00041 Score=43.90 Aligned_cols=22 Identities=41% Similarity=0.430 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988754
No 470
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.20 E-value=0.00044 Score=42.34 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998765
No 471
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=0.00041 Score=44.83 Aligned_cols=23 Identities=43% Similarity=0.541 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.+.++|++|+|||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999987653
No 472
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.20 E-value=0.0004 Score=44.12 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+.
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5889999999999999998754
No 473
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.20 E-value=0.00042 Score=43.81 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.++++|++|+|||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987653
No 474
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.20 E-value=0.00042 Score=42.98 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999987653
No 475
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.20 E-value=0.00042 Score=41.48 Aligned_cols=65 Identities=22% Similarity=0.324 Sum_probs=38.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEE-EEeCCCccc-cccchhhhhcCCcEEEE
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQ-IWDTAGQER-FRTITSSYYRGAHGIIV 86 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~D~~g~~~-~~~~~~~~~~~~~~iv~ 86 (109)
.++++|++|+|||||++.+.+.. .+..| .+.+++. ..+. +...++.++ --.+....+.+.+.+++
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~-----~~~~G------~i~~~~~-~~i~~~~~lS~G~~~rv~laral~~~p~illl 94 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL-----EPDEG------IVTWGST-VKIGYFEQLSGGEKMRLALAKLLLENPNLLLL 94 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-----CCCce------EEEECCe-EEEEEEccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 57899999999999999986553 22222 1122221 1111 122444333 23456677788888888
No 476
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.20 E-value=0.00043 Score=43.71 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998764
No 477
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.20 E-value=0.00037 Score=44.13 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.-.+++.|+.|+|||+|++.+....
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 3568899999999999999987643
No 478
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.19 E-value=0.00035 Score=41.82 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
.|+++|++|+|||++++.+..
T Consensus 1 ~i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 479999999999999999863
No 479
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.19 E-value=0.00044 Score=44.97 Aligned_cols=22 Identities=41% Similarity=0.455 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999998754
No 480
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.19 E-value=0.00043 Score=45.09 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988754
No 481
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.0022 Score=44.38 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=25.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIE 35 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~ 35 (109)
.+-=|+++|.-+.|||||++.++...++.
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg 85 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPG 85 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCc
Confidence 34558999999999999999999988864
No 482
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.19 E-value=0.00045 Score=44.50 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=18.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.-++++.|+||+|||||++-+..
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~ 72 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIAN 72 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHH
T ss_pred cceEEEECCCccchhHHHHHHHh
Confidence 45899999999999999997653
No 483
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.19 E-value=0.00045 Score=42.06 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...|+++|++|+|||++...+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999998754
No 484
>PRK14526 adenylate kinase; Provisional
Probab=97.18 E-value=0.00042 Score=44.19 Aligned_cols=22 Identities=27% Similarity=0.598 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
++++++|++|+||||+++.+..
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~ 22 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSN 22 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998763
No 485
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.18 E-value=0.00044 Score=42.99 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
-++++|++|+||+|++.++....
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48999999999999999998763
No 486
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.18 E-value=0.00044 Score=44.25 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.+.++|++|+|||||++.+.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 48999999999999999987653
No 487
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.18 E-value=0.00045 Score=41.99 Aligned_cols=20 Identities=30% Similarity=0.597 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033918 11 LLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~ 30 (109)
+.++|.+|+||||++.++..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~ 21 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVK 21 (155)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999875
No 488
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.18 E-value=0.00045 Score=44.23 Aligned_cols=22 Identities=45% Similarity=0.448 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5799999999999999988764
No 489
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.00041 Score=43.75 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.++++|++|+|||||++.+.+-.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccC
Confidence 68899999999999999987653
No 490
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.00049 Score=42.32 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988654
No 491
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.17 E-value=0.00048 Score=43.36 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
=.+.++|++|+|||||++.+.+-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999987754
No 492
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.17 E-value=0.00046 Score=44.81 Aligned_cols=22 Identities=45% Similarity=0.505 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999988754
No 493
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.17 E-value=0.00052 Score=42.20 Aligned_cols=23 Identities=39% Similarity=0.394 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.++++|++|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999987653
No 494
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.00048 Score=43.07 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998764
No 495
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.16 E-value=0.00047 Score=44.70 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999988754
No 496
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.16 E-value=0.00048 Score=43.43 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.++++|++|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999887653
No 497
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.16 E-value=0.00048 Score=44.27 Aligned_cols=23 Identities=43% Similarity=0.505 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.++++|++|+|||||++.+.+-.
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999987543
No 498
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.16 E-value=0.00047 Score=44.27 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.++++|++|+|||||++.+.+..
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999987653
No 499
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.16 E-value=0.00049 Score=42.03 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
-+.++|.+|+|||||+.++..
T Consensus 3 vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999874
No 500
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.16 E-value=0.00049 Score=44.93 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+.
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998764
Done!