Query 033918
Match_columns 109
No_of_seqs 114 out of 1181
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 12:56:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.9 3.4E-27 1.2E-31 148.9 9.4 104 5-108 10-125 (216)
2 2bme_A RAB4A, RAS-related prot 99.9 1E-22 3.5E-27 124.6 11.6 108 1-108 3-122 (186)
3 3tw8_B RAS-related protein RAB 99.9 8.2E-23 2.8E-27 124.2 11.1 108 1-108 2-120 (181)
4 2bcg_Y Protein YP2, GTP-bindin 99.9 1.2E-22 4.1E-27 126.4 12.0 108 1-108 1-120 (206)
5 2fu5_C RAS-related protein RAB 99.9 2.4E-23 8E-28 127.2 8.4 108 1-108 1-120 (183)
6 3tkl_A RAS-related protein RAB 99.9 2.1E-22 7E-27 124.1 12.6 107 2-108 10-128 (196)
7 2ew1_A RAS-related protein RAB 99.9 2E-22 6.8E-27 125.6 11.5 105 4-108 22-138 (201)
8 2hup_A RAS-related protein RAB 99.9 1.4E-22 4.8E-27 126.0 10.5 105 4-108 25-141 (201)
9 2fn4_A P23, RAS-related protei 99.9 4.6E-22 1.6E-26 120.9 12.2 107 1-108 2-121 (181)
10 1x3s_A RAS-related protein RAB 99.9 5.5E-22 1.9E-26 122.0 12.4 107 2-108 9-128 (195)
11 2a5j_A RAS-related protein RAB 99.9 4.1E-22 1.4E-26 122.8 11.8 106 3-108 16-133 (191)
12 3kkq_A RAS-related protein M-R 99.9 5.7E-22 2E-26 121.0 12.3 105 3-108 13-130 (183)
13 3t5g_A GTP-binding protein RHE 99.9 8E-22 2.7E-26 120.2 12.2 102 6-108 4-118 (181)
14 1z0f_A RAB14, member RAS oncog 99.9 6.7E-22 2.3E-26 119.9 11.7 105 4-108 11-127 (179)
15 2oil_A CATX-8, RAS-related pro 99.9 1E-21 3.4E-26 121.0 12.7 105 4-108 21-137 (193)
16 2fg5_A RAB-22B, RAS-related pr 99.9 7.2E-22 2.5E-26 121.8 12.0 106 3-108 18-135 (192)
17 1gwn_A RHO-related GTP-binding 99.9 3.3E-22 1.1E-26 124.9 10.6 107 1-108 21-139 (205)
18 1r2q_A RAS-related protein RAB 99.9 8.6E-22 2.9E-26 118.5 11.9 104 5-108 3-118 (170)
19 1ek0_A Protein (GTP-binding pr 99.9 1E-21 3.5E-26 118.2 12.1 101 8-108 3-115 (170)
20 2gf9_A RAS-related protein RAB 99.9 1.4E-21 4.7E-26 120.2 12.8 105 4-108 18-134 (189)
21 1z2a_A RAS-related protein RAB 99.9 5.3E-22 1.8E-26 119.3 10.7 104 5-108 2-116 (168)
22 3q3j_B RHO-related GTP-binding 99.9 5.6E-22 1.9E-26 124.5 11.1 104 4-108 23-138 (214)
23 1wms_A RAB-9, RAB9, RAS-relate 99.9 1.5E-21 5E-26 118.5 12.5 105 4-108 3-123 (177)
24 1vg8_A RAS-related protein RAB 99.9 6.3E-22 2.2E-26 122.9 11.1 108 1-108 1-124 (207)
25 1z06_A RAS-related protein RAB 99.9 1.2E-21 4.2E-26 120.4 12.0 103 6-108 18-134 (189)
26 1zbd_A Rabphilin-3A; G protein 99.9 1.1E-21 3.8E-26 121.6 11.8 105 4-108 4-120 (203)
27 2efe_B Small GTP-binding prote 99.9 1.6E-21 5.4E-26 118.7 12.3 105 4-108 8-124 (181)
28 1z0j_A RAB-22, RAS-related pro 99.9 2.2E-21 7.6E-26 116.8 12.3 104 5-108 3-118 (170)
29 1g16_A RAS-related protein SEC 99.9 6.5E-22 2.2E-26 119.1 9.9 102 7-108 2-115 (170)
30 3cpj_B GTP-binding protein YPT 99.9 1.2E-21 4.1E-26 123.4 11.4 104 5-108 10-125 (223)
31 3reg_A RHO-like small GTPase; 99.9 1.6E-21 5.4E-26 120.3 11.5 103 5-108 20-134 (194)
32 2o52_A RAS-related protein RAB 99.9 7.1E-22 2.4E-26 122.7 10.0 104 5-108 22-137 (200)
33 2il1_A RAB12; G-protein, GDP, 99.9 6.3E-22 2.1E-26 122.2 9.7 105 4-108 22-138 (192)
34 1z08_A RAS-related protein RAB 99.9 4.5E-22 1.5E-26 120.0 8.8 104 5-108 3-118 (170)
35 1m7b_A RND3/RHOE small GTP-bin 99.9 1.3E-21 4.5E-26 119.9 10.7 104 4-108 3-118 (184)
36 1ky3_A GTP-binding protein YPT 99.9 5.8E-22 2E-26 120.5 9.1 108 1-108 1-125 (182)
37 2p5s_A RAS and EF-hand domain 99.9 6.6E-22 2.3E-26 122.6 9.5 105 4-108 24-140 (199)
38 2y8e_A RAB-protein 6, GH09086P 99.9 1.9E-21 6.6E-26 117.9 11.2 103 6-108 12-126 (179)
39 3bc1_A RAS-related protein RAB 99.9 2.7E-21 9.3E-26 118.5 11.8 105 4-108 7-134 (195)
40 2g6b_A RAS-related protein RAB 99.9 2.9E-21 1E-25 117.4 11.5 105 4-108 6-123 (180)
41 3dz8_A RAS-related protein RAB 99.9 8.8E-23 3E-27 125.8 4.6 106 3-108 18-135 (191)
42 3l0i_B RAS-related protein RAB 99.9 1.6E-22 5.5E-27 125.4 5.6 107 2-108 27-145 (199)
43 2j0v_A RAC-like GTP-binding pr 99.9 2.4E-21 8.1E-26 121.0 11.0 103 5-108 6-120 (212)
44 3cph_A RAS-related protein SEC 99.9 4.4E-21 1.5E-25 119.6 11.8 104 5-108 17-132 (213)
45 1c1y_A RAS-related protein RAP 99.9 3.1E-21 1E-25 115.9 10.6 100 8-108 3-115 (167)
46 3c5c_A RAS-like protein 12; GD 99.9 6.4E-21 2.2E-25 117.3 11.9 102 5-108 18-134 (187)
47 3oes_A GTPase rhebl1; small GT 99.9 2.8E-21 9.7E-26 119.9 10.3 102 6-108 22-136 (201)
48 2hxs_A RAB-26, RAS-related pro 99.9 1.6E-21 5.6E-26 118.3 9.0 91 5-95 3-98 (178)
49 2atx_A Small GTP binding prote 99.9 3.5E-21 1.2E-25 118.7 10.4 103 5-108 15-129 (194)
50 2f7s_A C25KG, RAS-related prot 99.9 2.4E-21 8.4E-26 121.3 9.7 105 4-108 21-148 (217)
51 2q3h_A RAS homolog gene family 99.9 5.2E-21 1.8E-25 118.5 10.9 103 5-108 17-131 (201)
52 1mh1_A RAC1; GTP-binding, GTPa 99.9 1.1E-20 3.6E-25 115.4 12.0 102 6-108 3-116 (186)
53 3gj0_A GTP-binding nuclear pro 99.9 1.2E-21 4.1E-26 123.2 7.9 106 3-108 10-126 (221)
54 3clv_A RAB5 protein, putative; 99.9 4.2E-21 1.4E-25 118.4 10.3 104 5-108 4-154 (208)
55 4dsu_A GTPase KRAS, isoform 2B 99.9 1.2E-20 4.2E-25 115.3 12.2 102 6-108 2-116 (189)
56 1kao_A RAP2A; GTP-binding prot 99.9 1E-20 3.6E-25 113.3 11.4 100 8-108 3-115 (167)
57 3cbq_A GTP-binding protein REM 99.9 3.2E-21 1.1E-25 119.5 8.9 105 4-108 19-137 (195)
58 1u8z_A RAS-related protein RAL 99.9 1.3E-20 4.6E-25 112.9 11.0 101 7-108 3-116 (168)
59 2bov_A RAla, RAS-related prote 99.9 1.6E-20 5.6E-25 116.3 11.6 103 5-108 11-126 (206)
60 2j1l_A RHO-related GTP-binding 99.8 5.2E-21 1.8E-25 119.9 9.1 102 6-108 32-145 (214)
61 2a9k_A RAS-related protein RAL 99.8 1.6E-20 5.6E-25 114.5 11.0 102 6-108 16-130 (187)
62 2gco_A H9, RHO-related GTP-bin 99.8 1.6E-20 5.6E-25 116.5 11.0 102 6-108 23-136 (201)
63 4gzl_A RAS-related C3 botulinu 99.8 1.7E-20 5.9E-25 116.8 10.8 103 5-108 27-141 (204)
64 3q85_A GTP-binding protein REM 99.8 1.5E-20 5.3E-25 113.2 10.1 101 8-108 2-116 (169)
65 3ihw_A Centg3; RAS, centaurin, 99.8 1.9E-20 6.5E-25 115.0 10.7 98 4-108 16-126 (184)
66 2iwr_A Centaurin gamma 1; ANK 99.8 2E-20 7E-25 113.7 10.7 96 6-108 5-115 (178)
67 3t1o_A Gliding protein MGLA; G 99.8 2.6E-21 9.1E-26 119.0 6.8 104 4-108 10-142 (198)
68 2erx_A GTP-binding protein DI- 99.8 2.7E-20 9.2E-25 112.1 11.1 101 7-108 2-116 (172)
69 2atv_A RERG, RAS-like estrogen 99.8 2.8E-20 9.5E-25 115.0 11.2 102 5-108 25-139 (196)
70 2fv8_A H6, RHO-related GTP-bin 99.8 2.8E-20 9.6E-25 115.9 11.0 102 6-108 23-136 (207)
71 2gf0_A GTP-binding protein DI- 99.8 2.1E-20 7.1E-25 115.3 10.2 104 4-108 4-121 (199)
72 3bwd_D RAC-like GTP-binding pr 99.8 2.9E-21 1E-25 117.6 5.9 103 5-108 5-119 (182)
73 4bas_A ADP-ribosylation factor 99.8 4.3E-20 1.5E-24 113.9 10.9 102 3-108 12-134 (199)
74 2nzj_A GTP-binding protein REM 99.8 3.9E-20 1.3E-24 111.9 10.3 102 6-108 2-118 (175)
75 3con_A GTPase NRAS; structural 99.8 8E-20 2.7E-24 112.1 11.8 102 6-108 19-133 (190)
76 2yc2_C IFT27, small RAB-relate 99.8 2.9E-21 1E-25 119.8 4.8 103 6-108 18-139 (208)
77 2f9l_A RAB11B, member RAS onco 99.8 1.3E-19 4.4E-24 112.3 12.1 103 6-108 3-117 (199)
78 1zd9_A ADP-ribosylation factor 99.8 3.1E-20 1.1E-24 114.1 9.2 99 6-108 20-131 (188)
79 2ce2_X GTPase HRAS; signaling 99.8 1.2E-19 4E-24 108.5 11.1 100 8-108 3-115 (166)
80 3q72_A GTP-binding protein RAD 99.8 5E-20 1.7E-24 110.6 9.5 99 8-108 2-113 (166)
81 1oix_A RAS-related protein RAB 99.8 1.9E-19 6.6E-24 111.1 12.1 105 4-108 25-141 (191)
82 1m2o_B GTP-binding protein SAR 99.8 1.9E-19 6.5E-24 111.0 11.7 97 7-108 22-131 (190)
83 4djt_A GTP-binding nuclear pro 99.8 3.2E-20 1.1E-24 116.3 7.8 105 4-108 7-124 (218)
84 1zj6_A ADP-ribosylation factor 99.8 8.8E-20 3E-24 111.9 9.5 98 6-108 14-124 (187)
85 2h17_A ADP-ribosylation factor 99.8 6.5E-20 2.2E-24 112.0 8.7 100 4-108 17-129 (181)
86 1f6b_A SAR1; gtpases, N-termin 99.8 6.9E-20 2.4E-24 113.7 8.8 97 7-108 24-133 (198)
87 1ksh_A ARF-like protein 2; sma 99.8 2E-19 6.9E-24 110.0 10.7 98 6-108 16-126 (186)
88 1upt_A ARL1, ADP-ribosylation 99.8 2.8E-19 9.5E-24 107.7 11.0 98 6-108 5-115 (171)
89 1fzq_A ADP-ribosylation factor 99.8 1.1E-19 3.8E-24 111.2 9.3 99 5-108 13-124 (181)
90 2h57_A ADP-ribosylation factor 99.8 1.3E-19 4.5E-24 111.3 9.4 100 5-108 18-133 (190)
91 1r8s_A ADP-ribosylation factor 99.8 7.5E-20 2.6E-24 109.7 8.0 95 9-108 1-108 (164)
92 2g3y_A GTP-binding protein GEM 99.8 1.5E-19 5.3E-24 113.5 9.7 103 5-108 34-152 (211)
93 2b6h_A ADP-ribosylation factor 99.8 2.6E-19 8.9E-24 110.5 9.9 98 6-108 27-137 (192)
94 2zej_A Dardarin, leucine-rich 99.8 5.1E-20 1.7E-24 112.9 6.1 101 8-108 2-119 (184)
95 2cjw_A GTP-binding protein GEM 99.8 6.9E-19 2.4E-23 108.7 11.0 102 6-108 4-121 (192)
96 2wkq_A NPH1-1, RAS-related C3 99.8 1.7E-18 5.7E-23 114.1 11.6 101 7-108 154-266 (332)
97 2x77_A ADP-ribosylation factor 99.8 3.7E-19 1.3E-23 109.2 7.8 98 6-108 20-130 (189)
98 1moz_A ARL1, ADP-ribosylation 99.8 2.9E-19 1E-23 108.9 7.1 98 6-108 16-126 (183)
99 2lkc_A Translation initiation 99.8 4.2E-19 1.4E-23 107.6 7.1 102 5-108 5-114 (178)
100 3th5_A RAS-related C3 botulinu 99.6 1.6E-20 5.4E-25 116.7 0.0 102 6-108 28-141 (204)
101 3r7w_A Gtpase1, GTP-binding pr 99.8 4.2E-18 1.4E-22 112.2 9.2 99 7-108 2-122 (307)
102 2fh5_B SR-beta, signal recogni 99.8 5.6E-18 1.9E-22 105.7 8.9 79 5-86 4-84 (214)
103 3llu_A RAS-related GTP-binding 99.8 2.2E-18 7.4E-23 106.6 6.8 102 4-108 16-136 (196)
104 3o47_A ADP-ribosylation factor 99.7 2E-18 6.9E-23 114.7 6.0 97 7-108 164-273 (329)
105 3lvq_E ARF-GAP with SH3 domain 99.7 1.8E-17 6.1E-22 115.0 9.8 98 6-108 320-430 (497)
106 2wjg_A FEOB, ferrous iron tran 99.7 5E-17 1.7E-21 99.4 10.3 101 6-108 5-119 (188)
107 3r7w_B Gtpase2, GTP-binding pr 99.7 5.7E-18 1.9E-22 112.2 6.1 94 10-108 1-113 (331)
108 2wji_A Ferrous iron transport 99.7 5.9E-17 2E-21 97.6 9.8 99 8-108 3-115 (165)
109 1svi_A GTP-binding protein YSX 99.7 2.5E-17 8.4E-22 101.3 6.7 101 5-108 20-141 (195)
110 3c5h_A Glucocorticoid receptor 99.7 1.4E-18 4.8E-23 111.8 1.1 105 4-108 15-205 (255)
111 3dpu_A RAB family protein; roc 99.7 1.7E-17 5.9E-22 116.1 4.9 104 5-108 38-157 (535)
112 1nrj_B SR-beta, signal recogni 99.7 3.8E-17 1.3E-21 102.2 4.8 95 5-108 9-127 (218)
113 2gj8_A MNME, tRNA modification 99.7 1.3E-15 4.4E-20 92.5 11.0 100 7-108 3-122 (172)
114 2ged_A SR-beta, signal recogni 99.7 3.3E-17 1.1E-21 100.6 3.6 94 6-108 46-163 (193)
115 2cxx_A Probable GTP-binding pr 99.7 3.1E-17 1.1E-21 100.3 3.4 94 9-108 2-129 (190)
116 3a1s_A Iron(II) transport prot 99.7 1.4E-15 4.8E-20 98.0 10.8 102 5-108 2-117 (258)
117 2dyk_A GTP-binding protein; GT 99.7 5.3E-16 1.8E-20 92.4 8.2 98 9-108 2-115 (161)
118 3iby_A Ferrous iron transport 99.7 8.5E-16 2.9E-20 99.0 9.6 98 9-108 2-117 (256)
119 2qu8_A Putative nucleolar GTP- 99.7 1.7E-15 5.9E-20 95.6 10.4 101 6-108 27-149 (228)
120 3k53_A Ferrous iron transport 99.6 3.3E-15 1.1E-19 96.7 9.6 99 8-108 3-116 (271)
121 3pqc_A Probable GTP-binding pr 99.6 1.9E-15 6.4E-20 92.6 7.5 101 4-108 19-140 (195)
122 1wf3_A GTP-binding protein; GT 99.6 1.2E-14 4E-19 95.6 10.8 102 5-108 4-124 (301)
123 3iev_A GTP-binding protein ERA 99.6 6E-15 2.1E-19 97.2 9.0 105 3-108 5-129 (308)
124 3b1v_A Ferrous iron uptake tra 99.6 2.6E-15 8.8E-20 97.5 6.6 99 7-108 2-114 (272)
125 3i8s_A Ferrous iron transport 99.6 9.9E-15 3.4E-19 94.8 8.1 100 7-108 2-119 (274)
126 4dhe_A Probable GTP-binding pr 99.6 1.4E-15 4.8E-20 95.3 4.0 104 5-108 26-151 (223)
127 3t5d_A Septin-7; GTP-binding p 99.6 8.7E-15 3E-19 94.9 7.2 63 5-67 5-75 (274)
128 3lxx_A GTPase IMAP family memb 99.6 2.8E-15 9.4E-20 95.3 4.7 80 5-86 26-118 (239)
129 3lxw_A GTPase IMAP family memb 99.6 8.4E-15 2.9E-19 93.8 6.6 79 6-86 19-111 (247)
130 4dcu_A GTP-binding protein ENG 99.6 2.4E-15 8.2E-20 103.6 4.2 101 7-108 22-138 (456)
131 2xtp_A GTPase IMAP family memb 99.5 9.4E-14 3.2E-18 89.1 10.4 79 6-86 20-111 (260)
132 1mky_A Probable GTP-binding pr 99.5 1.8E-14 6.3E-19 98.8 7.4 98 9-108 2-117 (439)
133 2hjg_A GTP-binding protein ENG 99.5 4.5E-15 1.5E-19 101.8 4.3 100 8-108 3-118 (436)
134 3def_A T7I23.11 protein; chlor 99.5 9.3E-14 3.2E-18 89.5 9.6 77 7-86 35-122 (262)
135 2qag_A Septin-2, protein NEDD5 99.5 4.8E-14 1.7E-18 94.7 7.9 103 6-108 35-181 (361)
136 2hjg_A GTP-binding protein ENG 99.5 1.2E-14 4.3E-19 99.6 4.0 101 6-108 173-293 (436)
137 3gee_A MNME, tRNA modification 99.5 8.9E-14 3.1E-18 96.3 6.9 100 7-108 232-350 (476)
138 3izy_P Translation initiation 99.5 1.8E-15 6.2E-20 105.9 -2.5 101 7-108 3-111 (537)
139 1h65_A Chloroplast outer envel 99.4 1.9E-13 6.4E-18 88.4 6.2 77 7-86 38-125 (270)
140 3j2k_7 ERF3, eukaryotic polype 99.4 8.7E-13 3E-17 90.6 9.3 79 6-86 15-124 (439)
141 1ega_A Protein (GTP-binding pr 99.4 1.8E-13 6E-18 90.0 5.3 102 5-108 5-123 (301)
142 3qq5_A Small GTP-binding prote 99.4 1.5E-13 5.1E-18 94.0 4.6 103 4-108 30-147 (423)
143 1xzp_A Probable tRNA modificat 99.4 1.3E-13 4.5E-18 95.6 4.3 99 8-108 243-357 (482)
144 4dcu_A GTP-binding protein ENG 99.4 1.6E-13 5.4E-18 94.6 4.2 101 6-108 193-313 (456)
145 3tr5_A RF-3, peptide chain rel 99.4 7.3E-14 2.5E-18 97.8 2.0 101 6-108 11-141 (528)
146 1zo1_I IF2, translation initia 99.4 3.6E-14 1.2E-18 98.7 0.4 101 6-108 2-110 (501)
147 1wb1_A Translation elongation 99.4 4.3E-13 1.5E-17 93.1 5.8 100 7-108 18-132 (482)
148 1g7s_A Translation initiation 99.4 1.5E-13 5.3E-18 97.3 2.7 102 7-108 4-129 (594)
149 3sjy_A Translation initiation 99.4 7E-12 2.4E-16 85.2 10.6 78 3-86 3-104 (403)
150 3geh_A MNME, tRNA modification 99.4 3.1E-13 1.1E-17 93.3 3.6 100 7-108 223-337 (462)
151 2h5e_A Peptide chain release f 99.4 8.1E-13 2.8E-17 92.6 5.4 103 6-108 11-141 (529)
152 4fid_A G protein alpha subunit 99.3 3.5E-12 1.2E-16 85.0 8.1 54 55-108 159-235 (340)
153 3p26_A Elongation factor 1 alp 99.3 8.1E-13 2.8E-17 91.7 4.9 80 7-86 32-140 (483)
154 3cb4_D GTP-binding protein LEP 99.3 1.5E-12 5.2E-17 92.3 6.1 102 7-108 3-130 (599)
155 1dar_A EF-G, elongation factor 99.3 1E-12 3.5E-17 94.5 4.9 102 3-108 7-136 (691)
156 1n0u_A EF-2, elongation factor 99.3 4E-12 1.4E-16 93.1 8.0 104 5-108 16-157 (842)
157 2c78_A Elongation factor TU-A; 99.3 1.7E-12 5.7E-17 88.3 5.6 81 6-86 9-104 (405)
158 3ohm_A Guanine nucleotide-bind 99.3 2.6E-11 8.8E-16 80.5 11.0 37 48-86 160-196 (327)
159 1s0u_A EIF-2-gamma, translatio 99.3 1.3E-11 4.6E-16 84.0 9.8 81 6-86 6-110 (408)
160 1mky_A Probable GTP-binding pr 99.3 5.1E-12 1.8E-16 86.7 7.2 100 7-108 179-299 (439)
161 2aka_B Dynamin-1; fusion prote 99.3 7.1E-12 2.4E-16 81.6 7.5 29 6-34 24-52 (299)
162 2qtf_A Protein HFLX, GTP-bindi 99.3 1.2E-11 4E-16 83.3 8.7 75 9-86 179-263 (364)
163 2ohf_A Protein OLA1, GTP-bindi 99.3 2.8E-12 9.7E-17 86.9 5.6 88 7-94 21-134 (396)
164 1pui_A ENGB, probable GTP-bind 99.3 1.9E-12 6.3E-17 80.3 4.3 100 6-108 24-144 (210)
165 1d2e_A Elongation factor TU (E 99.3 2.4E-12 8.3E-17 87.4 4.8 79 8-86 3-95 (397)
166 3izq_1 HBS1P, elongation facto 99.3 1.4E-12 4.8E-17 92.7 3.5 78 7-86 166-274 (611)
167 1kk1_A EIF2gamma; initiation o 99.3 2.5E-11 8.4E-16 82.7 9.4 82 5-86 7-112 (410)
168 2ywe_A GTP-binding protein LEP 99.3 1.2E-11 4E-16 87.8 7.7 103 6-108 4-132 (600)
169 1lnz_A SPO0B-associated GTP-bi 99.3 2.7E-12 9.1E-17 85.8 4.0 96 10-108 160-281 (342)
170 2rdo_7 EF-G, elongation factor 99.3 2.6E-11 9E-16 87.4 8.6 105 4-108 6-141 (704)
171 1jal_A YCHF protein; nucleotid 99.2 8.8E-12 3E-16 83.8 5.7 77 8-86 2-102 (363)
172 1jwy_B Dynamin A GTPase domain 99.2 3E-11 1E-15 79.2 8.2 27 7-33 23-49 (315)
173 2xtz_A Guanine nucleotide-bind 99.2 3E-12 1E-16 85.9 3.3 54 55-108 181-257 (354)
174 2qnr_A Septin-2, protein NEDD5 99.2 9.6E-12 3.3E-16 81.7 5.6 70 6-75 16-101 (301)
175 2xex_A Elongation factor G; GT 99.2 2.8E-11 9.7E-16 87.2 8.2 103 4-108 6-134 (693)
176 2e87_A Hypothetical protein PH 99.2 8.4E-11 2.9E-15 78.8 10.0 101 6-108 165-287 (357)
177 3t34_A Dynamin-related protein 99.2 5E-11 1.7E-15 79.9 8.5 28 8-35 34-61 (360)
178 1jny_A EF-1-alpha, elongation 99.2 4.3E-12 1.5E-16 87.0 3.2 89 6-94 4-124 (435)
179 1cip_A Protein (guanine nucleo 99.2 2.5E-11 8.7E-16 81.3 6.7 53 56-108 192-267 (353)
180 2dy1_A Elongation factor G; tr 99.2 1.1E-11 3.7E-16 89.0 5.2 104 5-108 6-133 (665)
181 1r5b_A Eukaryotic peptide chai 99.2 2.1E-11 7.3E-16 84.3 6.2 76 7-86 42-150 (467)
182 1zun_B Sulfate adenylate trans 99.2 3.3E-11 1.1E-15 82.6 6.9 79 6-86 22-133 (434)
183 3mca_A HBS1, elongation factor 99.2 3.2E-12 1.1E-16 90.6 1.8 78 7-86 176-284 (592)
184 1f60_A Elongation factor EEF1A 99.2 6E-12 2.1E-16 86.9 2.6 77 6-86 5-114 (458)
185 2qpt_A EH domain-containing pr 99.2 3.5E-11 1.2E-15 84.7 6.2 29 6-34 63-91 (550)
186 2j69_A Bacterial dynamin-like 99.2 1.3E-10 4.6E-15 83.7 8.2 27 7-33 68-94 (695)
187 2x2e_A Dynamin-1; nitration, h 99.1 6.2E-11 2.1E-15 79.3 6.0 28 7-34 30-57 (353)
188 1wxq_A GTP-binding protein; st 99.1 1.1E-10 3.9E-15 79.3 6.6 78 9-86 1-107 (397)
189 3avx_A Elongation factor TS, e 99.1 2.6E-11 9.1E-16 90.9 3.6 80 7-86 295-388 (1289)
190 2qag_C Septin-7; cell cycle, c 99.1 2.1E-10 7.3E-15 78.4 7.4 64 6-69 29-100 (418)
191 2elf_A Protein translation elo 99.1 5.6E-11 1.9E-15 80.1 4.2 67 10-86 23-89 (370)
192 2dby_A GTP-binding protein; GD 99.0 6.7E-10 2.3E-14 74.8 5.5 76 9-86 2-105 (368)
193 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 4E-09 1.4E-13 71.6 6.8 80 7-86 19-121 (392)
194 4a9a_A Ribosome-interacting GT 98.9 4.7E-09 1.6E-13 70.9 6.7 77 8-86 72-155 (376)
195 3cnl_A YLQF, putative uncharac 98.8 3E-09 1E-13 68.7 3.3 56 9-68 100-155 (262)
196 1puj_A YLQF, conserved hypothe 98.8 1.1E-08 3.8E-13 66.6 5.7 57 7-67 119-175 (282)
197 3vqt_A RF-3, peptide chain rel 98.7 6.3E-09 2.2E-13 73.3 3.7 101 6-108 29-159 (548)
198 2hf9_A Probable hydrogenase ni 98.7 2E-09 6.8E-14 67.3 -0.0 37 7-43 37-73 (226)
199 1udx_A The GTP-binding protein 98.7 1.7E-08 5.9E-13 69.0 4.4 97 10-108 159-276 (416)
200 1azs_C GS-alpha; complex (lyas 98.7 1.3E-07 4.5E-12 64.4 8.2 58 49-108 211-291 (402)
201 3p32_A Probable GTPase RV1496/ 98.6 4.2E-08 1.4E-12 65.7 5.3 25 6-30 77-101 (355)
202 1zcb_A G alpha I/13; GTP-bindi 98.5 4.1E-07 1.4E-11 61.2 7.1 66 39-108 187-275 (362)
203 3ec1_A YQEH GTPase; atnos1, at 98.5 5.1E-07 1.7E-11 60.8 7.0 56 8-67 162-222 (369)
204 1u0l_A Probable GTPase ENGC; p 98.4 9E-09 3.1E-13 67.6 -1.9 80 23-108 32-122 (301)
205 4fn5_A EF-G 1, elongation fact 98.4 5.1E-07 1.8E-11 65.4 6.3 104 5-108 10-144 (709)
206 3j25_A Tetracycline resistance 98.4 1.1E-08 3.8E-13 73.2 -3.1 79 8-86 2-96 (638)
207 2www_A Methylmalonic aciduria 98.4 5.3E-07 1.8E-11 60.3 5.0 23 8-30 74-96 (349)
208 3zvr_A Dynamin-1; hydrolase, D 98.3 5.7E-06 1.9E-10 60.4 9.9 27 7-33 50-76 (772)
209 3h2y_A GTPase family protein; 98.3 7.6E-07 2.6E-11 60.0 4.3 58 8-68 160-222 (368)
210 1f5n_A Interferon-induced guan 98.2 1.3E-06 4.5E-11 62.1 5.0 61 6-68 36-102 (592)
211 3sop_A Neuronal-specific septi 98.1 2.6E-06 8.8E-11 55.2 3.4 26 7-32 1-26 (270)
212 2qag_B Septin-6, protein NEDD5 98.0 2.3E-05 7.9E-10 53.8 7.0 26 8-33 42-67 (427)
213 1ye8_A Protein THEP1, hypothet 97.9 8.4E-06 2.9E-10 49.6 3.4 23 9-31 1-23 (178)
214 1kgd_A CASK, peripheral plasma 97.9 1.1E-05 3.6E-10 49.0 3.2 23 9-31 6-28 (180)
215 1knq_A Gluconate kinase; ALFA/ 97.8 1.9E-05 6.4E-10 47.4 4.0 30 1-30 1-30 (175)
216 1lvg_A Guanylate kinase, GMP k 97.8 1.4E-05 4.8E-10 49.2 3.2 22 9-30 5-26 (198)
217 2wsm_A Hydrogenase expression/ 97.8 2.1E-05 7.1E-10 48.7 3.5 25 7-31 29-53 (221)
218 3a00_A Guanylate kinase, GMP k 97.7 2E-05 7E-10 47.9 3.1 20 11-30 4-23 (186)
219 3tr0_A Guanylate kinase, GMP k 97.7 2.2E-05 7.5E-10 48.1 3.2 22 10-31 9-30 (205)
220 1ex7_A Guanylate kinase; subst 97.7 2.4E-05 8E-10 48.1 3.2 21 11-31 4-24 (186)
221 1zp6_A Hypothetical protein AT 97.7 2.2E-05 7.6E-10 47.6 3.0 24 8-31 9-32 (191)
222 1znw_A Guanylate kinase, GMP k 97.7 2.4E-05 8.1E-10 48.4 3.1 22 10-31 22-43 (207)
223 1s96_A Guanylate kinase, GMP k 97.7 2.5E-05 8.4E-10 49.1 3.2 23 9-31 17-39 (219)
224 4gp7_A Metallophosphoesterase; 97.7 2E-05 7E-10 47.4 2.5 18 10-27 11-28 (171)
225 3ney_A 55 kDa erythrocyte memb 97.7 2.9E-05 9.9E-10 48.1 3.2 24 8-31 19-42 (197)
226 1z6g_A Guanylate kinase; struc 97.7 2.8E-05 9.4E-10 48.6 3.1 22 10-31 25-46 (218)
227 3tau_A Guanylate kinase, GMP k 97.7 3.3E-05 1.1E-09 47.8 3.2 23 9-31 9-31 (208)
228 3q5d_A Atlastin-1; G protein, 97.6 0.00011 3.9E-09 50.7 5.9 25 6-30 65-89 (447)
229 1ly1_A Polynucleotide kinase; 97.6 4.8E-05 1.6E-09 45.5 3.5 22 9-30 3-24 (181)
230 3c8u_A Fructokinase; YP_612366 97.6 5E-05 1.7E-09 47.0 3.5 24 7-30 21-44 (208)
231 2qor_A Guanylate kinase; phosp 97.6 4.6E-05 1.6E-09 46.9 3.2 23 9-31 13-35 (204)
232 1htw_A HI0065; nucleotide-bind 97.6 4.9E-05 1.7E-09 45.4 3.1 23 10-32 35-57 (158)
233 3kb2_A SPBC2 prophage-derived 97.6 4.6E-05 1.6E-09 45.3 2.9 21 10-30 3-23 (173)
234 1kag_A SKI, shikimate kinase I 97.6 5.5E-05 1.9E-09 45.1 3.2 22 9-30 5-26 (173)
235 3lw7_A Adenylate kinase relate 97.6 5.8E-05 2E-09 44.7 3.2 20 9-28 2-21 (179)
236 2j41_A Guanylate kinase; GMP, 97.5 5.5E-05 1.9E-09 46.3 3.1 24 9-32 7-30 (207)
237 3tif_A Uncharacterized ABC tra 97.5 4.9E-05 1.7E-09 48.2 2.9 22 10-31 33-54 (235)
238 2wwf_A Thymidilate kinase, put 97.5 7.3E-05 2.5E-09 45.9 3.7 24 7-30 9-32 (212)
239 3fb4_A Adenylate kinase; psych 97.5 6E-05 2E-09 46.6 3.2 21 9-29 1-21 (216)
240 2bdt_A BH3686; alpha-beta prot 97.5 6.2E-05 2.1E-09 45.6 3.1 21 10-30 4-24 (189)
241 4eun_A Thermoresistant glucoki 97.5 6.3E-05 2.1E-09 46.2 3.2 22 9-30 30-51 (200)
242 3dl0_A Adenylate kinase; phosp 97.5 6.3E-05 2.1E-09 46.6 3.2 22 9-30 1-22 (216)
243 1qhx_A CPT, protein (chloramph 97.5 6.3E-05 2.1E-09 45.1 3.0 22 9-30 4-25 (178)
244 3asz_A Uridine kinase; cytidin 97.5 7.4E-05 2.5E-09 46.0 3.4 24 7-30 5-28 (211)
245 2bbw_A Adenylate kinase 4, AK4 97.5 7.4E-05 2.5E-09 47.3 3.4 21 9-29 28-48 (246)
246 1uf9_A TT1252 protein; P-loop, 97.5 7.9E-05 2.7E-09 45.5 3.4 31 1-31 1-31 (203)
247 3vaa_A Shikimate kinase, SK; s 97.5 8.2E-05 2.8E-09 45.6 3.4 22 9-30 26-47 (199)
248 2pcj_A ABC transporter, lipopr 97.5 6.4E-05 2.2E-09 47.3 2.8 22 10-31 32-53 (224)
249 2cdn_A Adenylate kinase; phosp 97.5 0.0001 3.4E-09 45.2 3.6 25 6-30 18-42 (201)
250 2onk_A Molybdate/tungstate ABC 97.5 7.9E-05 2.7E-09 47.4 3.2 22 10-31 26-47 (240)
251 3t61_A Gluconokinase; PSI-biol 97.5 7.9E-05 2.7E-09 45.7 3.1 22 9-30 19-40 (202)
252 2i3b_A HCR-ntpase, human cance 97.5 7.7E-05 2.6E-09 45.8 3.0 21 10-30 3-23 (189)
253 1b0u_A Histidine permease; ABC 97.5 7.6E-05 2.6E-09 48.0 3.0 22 10-31 34-55 (262)
254 3uie_A Adenylyl-sulfate kinase 97.5 8.7E-05 3E-09 45.5 3.1 23 8-30 25-47 (200)
255 2jaq_A Deoxyguanosine kinase; 97.5 0.0001 3.5E-09 44.9 3.4 21 10-30 2-22 (205)
256 3ec2_A DNA replication protein 97.5 8E-05 2.7E-09 44.8 2.9 23 8-30 38-60 (180)
257 3gfo_A Cobalt import ATP-bindi 97.4 8.2E-05 2.8E-09 48.3 3.0 22 10-31 36-57 (275)
258 3trf_A Shikimate kinase, SK; a 97.4 0.0001 3.4E-09 44.5 3.2 23 8-30 5-27 (185)
259 2cbz_A Multidrug resistance-as 97.4 9.4E-05 3.2E-09 46.9 3.2 22 10-31 33-54 (237)
260 2ehv_A Hypothetical protein PH 97.4 9.3E-05 3.2E-09 46.5 3.2 20 10-29 32-51 (251)
261 1nks_A Adenylate kinase; therm 97.4 0.0001 3.6E-09 44.4 3.2 21 10-30 3-23 (194)
262 2if2_A Dephospho-COA kinase; a 97.4 0.0001 3.6E-09 45.1 3.2 22 9-30 2-23 (204)
263 2rcn_A Probable GTPase ENGC; Y 97.4 0.0001 3.4E-09 49.6 3.4 23 10-32 217-239 (358)
264 2ff7_A Alpha-hemolysin translo 97.4 9.8E-05 3.3E-09 47.1 3.2 22 10-31 37-58 (247)
265 1sgw_A Putative ABC transporte 97.4 9.3E-05 3.2E-09 46.3 3.0 22 10-31 37-58 (214)
266 2rhm_A Putative kinase; P-loop 97.4 0.00012 3.9E-09 44.4 3.4 23 8-30 5-27 (193)
267 4a74_A DNA repair and recombin 97.4 9.1E-05 3.1E-09 46.0 3.0 21 10-30 27-47 (231)
268 1g6h_A High-affinity branched- 97.4 8.8E-05 3E-09 47.6 2.9 22 10-31 35-56 (257)
269 1y63_A LMAJ004144AAA protein; 97.4 0.00013 4.4E-09 44.2 3.5 25 7-31 9-33 (184)
270 1mv5_A LMRA, multidrug resista 97.4 0.00011 3.6E-09 46.8 3.2 22 10-31 30-51 (243)
271 3cm0_A Adenylate kinase; ATP-b 97.4 0.00013 4.5E-09 43.9 3.5 22 8-29 4-25 (186)
272 1cke_A CK, MSSA, protein (cyti 97.4 0.00013 4.3E-09 45.4 3.5 22 9-30 6-27 (227)
273 4g1u_C Hemin import ATP-bindin 97.4 9.1E-05 3.1E-09 47.8 2.9 22 10-31 39-60 (266)
274 1kht_A Adenylate kinase; phosp 97.4 0.00012 4E-09 44.2 3.2 22 9-30 4-25 (192)
275 2olj_A Amino acid ABC transpor 97.4 9.8E-05 3.4E-09 47.6 3.0 22 10-31 52-73 (263)
276 3sr0_A Adenylate kinase; phosp 97.4 0.00013 4.3E-09 45.4 3.3 22 9-30 1-22 (206)
277 2v9p_A Replication protein E1; 97.4 0.00012 4E-09 48.2 3.3 23 8-30 126-148 (305)
278 1ji0_A ABC transporter; ATP bi 97.4 0.0001 3.5E-09 46.8 2.9 22 10-31 34-55 (240)
279 2d2e_A SUFC protein; ABC-ATPas 97.4 0.00011 3.9E-09 46.9 3.2 22 10-31 31-52 (250)
280 1tq4_A IIGP1, interferon-induc 97.4 0.0002 6.8E-09 49.0 4.5 25 8-32 69-93 (413)
281 2zu0_C Probable ATP-dependent 97.4 0.00012 4E-09 47.3 3.2 22 10-31 48-69 (267)
282 2pze_A Cystic fibrosis transme 97.4 0.00012 4.1E-09 46.1 3.2 22 10-31 36-57 (229)
283 1jbk_A CLPB protein; beta barr 97.4 0.00014 4.8E-09 43.4 3.4 22 9-30 44-65 (195)
284 1np6_A Molybdopterin-guanine d 97.4 0.00013 4.4E-09 44.3 3.2 22 9-30 7-28 (174)
285 2qi9_C Vitamin B12 import ATP- 97.4 0.00011 3.8E-09 47.0 3.0 22 10-31 28-49 (249)
286 3b85_A Phosphate starvation-in 97.4 0.0001 3.6E-09 45.9 2.8 22 10-31 24-45 (208)
287 2ghi_A Transport protein; mult 97.4 0.00012 4.2E-09 47.0 3.2 22 10-31 48-69 (260)
288 1vpl_A ABC transporter, ATP-bi 97.4 0.00011 3.9E-09 47.1 3.0 22 10-31 43-64 (256)
289 2eyu_A Twitching motility prot 97.4 0.00013 4.3E-09 47.0 3.2 22 9-30 26-47 (261)
290 2ihy_A ABC transporter, ATP-bi 97.4 0.00013 4.4E-09 47.4 3.2 22 10-31 49-70 (279)
291 1e4v_A Adenylate kinase; trans 97.4 0.00012 4.2E-09 45.3 3.0 22 9-30 1-22 (214)
292 1lw7_A Transcriptional regulat 97.4 0.00011 3.8E-09 49.2 2.9 24 8-31 170-193 (365)
293 2ixe_A Antigen peptide transpo 97.4 0.00013 4.5E-09 47.2 3.2 22 10-31 47-68 (271)
294 1tev_A UMP-CMP kinase; ploop, 97.4 0.00016 5.6E-09 43.6 3.4 23 8-30 3-25 (196)
295 3lnc_A Guanylate kinase, GMP k 97.4 7E-05 2.4E-09 46.9 1.8 20 10-29 29-48 (231)
296 2qm8_A GTPase/ATPase; G protei 97.4 0.00014 4.9E-09 48.3 3.4 23 7-29 54-76 (337)
297 1u0l_A Probable GTPase ENGC; p 97.3 0.00015 5.1E-09 47.5 3.4 23 10-32 171-193 (301)
298 1via_A Shikimate kinase; struc 97.3 0.00013 4.3E-09 43.8 2.8 21 10-30 6-26 (175)
299 3tlx_A Adenylate kinase 2; str 97.3 0.00018 6.1E-09 45.6 3.6 24 7-30 28-51 (243)
300 2qt1_A Nicotinamide riboside k 97.3 0.00025 8.5E-09 43.6 4.2 26 6-31 19-44 (207)
301 3iij_A Coilin-interacting nucl 97.3 0.00016 5.5E-09 43.5 3.2 23 8-30 11-33 (180)
302 1jjv_A Dephospho-COA kinase; P 97.3 0.00018 6.3E-09 44.1 3.5 22 9-30 3-24 (206)
303 3fvq_A Fe(3+) IONS import ATP- 97.3 0.00013 4.4E-09 49.1 3.0 23 10-32 32-54 (359)
304 2plr_A DTMP kinase, probable t 97.3 0.00018 6.2E-09 44.0 3.5 23 8-30 4-26 (213)
305 2yz2_A Putative ABC transporte 97.3 0.00013 4.6E-09 47.0 2.9 22 10-31 35-56 (266)
306 1gvn_B Zeta; postsegregational 97.3 0.00019 6.6E-09 46.7 3.7 24 7-30 32-55 (287)
307 2nq2_C Hypothetical ABC transp 97.3 0.00014 4.7E-09 46.6 2.9 22 10-31 33-54 (253)
308 2pt5_A Shikimate kinase, SK; a 97.3 0.00017 6E-09 42.7 3.2 21 10-30 2-22 (168)
309 2pjz_A Hypothetical protein ST 97.3 0.00016 5.5E-09 46.6 3.2 22 10-31 32-53 (263)
310 2yv5_A YJEQ protein; hydrolase 97.3 0.00015 5.1E-09 47.5 3.1 23 9-32 166-188 (302)
311 1aky_A Adenylate kinase; ATP:A 97.3 0.00017 5.9E-09 44.8 3.3 23 8-30 4-26 (220)
312 1qf9_A UMP/CMP kinase, protein 97.3 0.00021 7.2E-09 43.1 3.6 24 7-30 5-28 (194)
313 3aez_A Pantothenate kinase; tr 97.3 0.00025 8.6E-09 46.7 4.0 25 6-30 88-112 (312)
314 1ixz_A ATP-dependent metallopr 97.3 0.00018 6.2E-09 45.6 3.2 22 10-31 51-72 (254)
315 1zd8_A GTP:AMP phosphotransfer 97.3 0.00018 6E-09 45.0 3.1 23 8-30 7-29 (227)
316 2x8a_A Nuclear valosin-contain 97.3 0.00017 5.9E-09 46.6 3.1 20 11-30 47-66 (274)
317 1z47_A CYSA, putative ABC-tran 97.3 0.00018 6E-09 48.4 3.2 23 10-32 43-65 (355)
318 3be4_A Adenylate kinase; malar 97.3 0.0002 6.8E-09 44.5 3.2 24 7-30 4-27 (217)
319 2f1r_A Molybdopterin-guanine d 97.3 8E-05 2.7E-09 45.1 1.4 21 10-30 4-24 (171)
320 3rlf_A Maltose/maltodextrin im 97.3 0.00018 6.2E-09 48.7 3.2 23 10-32 31-53 (381)
321 2iyv_A Shikimate kinase, SK; t 97.3 0.00016 5.5E-09 43.6 2.7 22 9-30 3-24 (184)
322 2it1_A 362AA long hypothetical 97.3 0.00019 6.5E-09 48.3 3.2 22 10-31 31-52 (362)
323 2xb4_A Adenylate kinase; ATP-b 97.3 0.00021 7.1E-09 44.7 3.2 22 9-30 1-22 (223)
324 2yyz_A Sugar ABC transporter, 97.3 0.00019 6.4E-09 48.3 3.2 22 10-31 31-52 (359)
325 1zak_A Adenylate kinase; ATP:A 97.3 0.00016 5.6E-09 44.9 2.7 23 8-30 5-27 (222)
326 2v54_A DTMP kinase, thymidylat 97.2 0.00025 8.7E-09 43.2 3.4 24 8-31 4-27 (204)
327 1g29_1 MALK, maltose transport 97.2 0.0002 6.9E-09 48.4 3.2 23 10-32 31-53 (372)
328 2bwj_A Adenylate kinase 5; pho 97.2 0.00021 7.1E-09 43.4 3.0 23 8-30 12-34 (199)
329 1v43_A Sugar-binding transport 97.2 0.00021 7.2E-09 48.3 3.2 22 10-31 39-60 (372)
330 2p65_A Hypothetical protein PF 97.2 0.00017 5.9E-09 43.0 2.5 23 8-30 43-65 (187)
331 1t9h_A YLOQ, probable GTPase E 97.2 5.2E-05 1.8E-09 50.0 0.1 24 9-32 174-197 (307)
332 1rj9_A FTSY, signal recognitio 97.2 0.00022 7.6E-09 46.8 3.1 22 8-29 102-123 (304)
333 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00024 8.1E-09 44.0 3.1 21 10-30 25-45 (235)
334 2bbs_A Cystic fibrosis transme 97.2 0.00021 7.2E-09 46.7 3.0 22 10-31 66-87 (290)
335 2c95_A Adenylate kinase 1; tra 97.2 0.00026 8.8E-09 42.9 3.2 23 8-30 9-31 (196)
336 2jeo_A Uridine-cytidine kinase 97.2 0.00031 1.1E-08 44.4 3.7 23 8-30 25-47 (245)
337 3tui_C Methionine import ATP-b 97.2 0.00024 8.2E-09 47.9 3.2 23 10-32 56-78 (366)
338 1ukz_A Uridylate kinase; trans 97.2 0.00035 1.2E-08 42.7 3.7 23 8-30 15-37 (203)
339 2ze6_A Isopentenyl transferase 97.2 0.00026 8.8E-09 45.2 3.2 21 10-30 3-23 (253)
340 2yvu_A Probable adenylyl-sulfa 97.2 0.00044 1.5E-08 41.8 4.1 24 7-30 12-35 (186)
341 2p5t_B PEZT; postsegregational 97.2 0.00022 7.4E-09 45.5 2.8 25 6-30 30-54 (253)
342 1odf_A YGR205W, hypothetical 3 97.2 0.00039 1.3E-08 45.4 4.1 24 6-29 29-52 (290)
343 1zcb_A G alpha I/13; GTP-bindi 97.2 0.00029 9.9E-09 47.4 3.5 24 6-29 31-54 (362)
344 2pbr_A DTMP kinase, thymidylat 97.2 0.00028 9.4E-09 42.6 3.2 21 10-30 2-22 (195)
345 2z0h_A DTMP kinase, thymidylat 97.2 0.00029 9.8E-09 42.7 3.2 21 10-30 2-22 (197)
346 2kjq_A DNAA-related protein; s 97.2 0.00019 6.4E-09 42.3 2.3 22 10-31 38-59 (149)
347 3tqc_A Pantothenate kinase; bi 97.2 0.00044 1.5E-08 45.9 4.2 25 6-30 90-114 (321)
348 3bos_A Putative DNA replicatio 97.2 0.00031 1.1E-08 43.6 3.4 23 8-30 52-74 (242)
349 1bif_A 6-phosphofructo-2-kinas 97.2 0.00031 1.1E-08 48.6 3.6 26 6-31 37-62 (469)
350 1in4_A RUVB, holliday junction 97.2 0.00026 9E-09 46.8 3.1 22 9-30 52-73 (334)
351 1iy2_A ATP-dependent metallopr 97.2 0.00028 9.6E-09 45.4 3.2 22 10-31 75-96 (278)
352 3nh6_A ATP-binding cassette SU 97.2 0.00016 5.3E-09 47.7 2.0 21 10-30 82-102 (306)
353 1nn5_A Similar to deoxythymidy 97.2 0.0003 1E-08 43.2 3.2 23 8-30 9-31 (215)
354 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00027 9.2E-09 45.2 3.0 22 9-30 5-26 (260)
355 1e6c_A Shikimate kinase; phosp 97.2 0.00029 1E-08 41.8 3.0 22 9-30 3-24 (173)
356 3gd7_A Fusion complex of cysti 97.2 0.00025 8.6E-09 48.2 3.0 21 10-30 49-69 (390)
357 3b9q_A Chloroplast SRP recepto 97.1 0.0003 1E-08 46.2 3.2 23 8-30 100-122 (302)
358 3d31_A Sulfate/molybdate ABC t 97.1 0.00017 5.9E-09 48.3 2.1 22 10-31 28-49 (348)
359 4e22_A Cytidylate kinase; P-lo 97.1 0.00033 1.1E-08 44.6 3.3 22 8-29 27-48 (252)
360 1lv7_A FTSH; alpha/beta domain 97.1 0.00031 1.1E-08 44.5 3.2 23 8-30 45-67 (257)
361 1rz3_A Hypothetical protein rb 97.1 0.00043 1.5E-08 42.5 3.6 24 7-30 21-44 (201)
362 1sq5_A Pantothenate kinase; P- 97.1 0.00042 1.4E-08 45.4 3.8 24 7-30 79-102 (308)
363 3e70_C DPA, signal recognition 97.1 0.00032 1.1E-08 46.6 3.2 24 7-30 128-151 (328)
364 3jvv_A Twitching mobility prot 97.1 0.0003 1E-08 47.2 3.1 21 10-30 125-145 (356)
365 1ak2_A Adenylate kinase isoenz 97.1 0.00039 1.3E-08 43.6 3.4 23 8-30 16-38 (233)
366 1gtv_A TMK, thymidylate kinase 97.1 0.0001 3.6E-09 45.3 0.8 21 10-30 2-22 (214)
367 2vli_A Antibiotic resistance p 97.1 0.00023 7.9E-09 42.7 2.3 23 8-30 5-27 (183)
368 2cvh_A DNA repair and recombin 97.1 0.00035 1.2E-08 43.0 3.1 21 10-30 22-42 (220)
369 1xjc_A MOBB protein homolog; s 97.1 0.0004 1.4E-08 42.0 3.2 22 9-30 5-26 (169)
370 1cr0_A DNA primase/helicase; R 97.1 0.00032 1.1E-08 45.5 3.0 21 10-30 37-57 (296)
371 1n0w_A DNA repair protein RAD5 97.1 0.00037 1.3E-08 43.5 3.2 22 10-31 26-47 (243)
372 1uj2_A Uridine-cytidine kinase 97.1 0.00042 1.4E-08 44.0 3.4 24 7-30 21-44 (252)
373 3umf_A Adenylate kinase; rossm 97.1 0.00041 1.4E-08 43.5 3.2 23 8-30 28-51 (217)
374 1vht_A Dephospho-COA kinase; s 97.1 0.0005 1.7E-08 42.6 3.6 23 8-30 4-26 (218)
375 2w58_A DNAI, primosome compone 97.1 0.00048 1.6E-08 42.1 3.4 22 9-30 55-76 (202)
376 2pez_A Bifunctional 3'-phospho 97.1 0.00046 1.6E-08 41.4 3.2 23 8-30 5-27 (179)
377 1ltq_A Polynucleotide kinase; 97.1 0.00047 1.6E-08 44.7 3.5 22 9-30 3-24 (301)
378 1njg_A DNA polymerase III subu 97.1 0.00042 1.4E-08 42.7 3.1 21 10-30 47-67 (250)
379 3n70_A Transport activator; si 97.1 0.00043 1.5E-08 40.4 3.0 24 8-31 24-47 (145)
380 2chg_A Replication factor C sm 97.1 0.00044 1.5E-08 42.2 3.1 21 10-30 40-60 (226)
381 2gza_A Type IV secretion syste 97.0 0.00036 1.2E-08 46.8 2.9 23 9-31 176-198 (361)
382 2npi_A Protein CLP1; CLP1-PCF1 97.0 0.00033 1.1E-08 48.5 2.8 23 9-31 139-161 (460)
383 2ewv_A Twitching motility prot 97.0 0.0004 1.4E-08 46.8 3.1 22 9-30 137-158 (372)
384 1oxx_K GLCV, glucose, ABC tran 97.0 0.00017 6E-09 48.3 1.3 23 10-32 33-55 (353)
385 1zuh_A Shikimate kinase; alpha 97.0 0.00051 1.7E-08 40.8 3.3 21 10-30 9-29 (168)
386 2vp4_A Deoxynucleoside kinase; 97.0 0.00029 9.9E-09 44.2 2.1 25 7-31 19-43 (230)
387 2p67_A LAO/AO transport system 97.0 0.00055 1.9E-08 45.5 3.5 24 6-29 54-77 (341)
388 3r20_A Cytidylate kinase; stru 97.0 0.00053 1.8E-08 43.5 3.3 23 7-29 8-30 (233)
389 3h4m_A Proteasome-activating n 97.0 0.00054 1.9E-08 44.0 3.3 24 8-31 51-74 (285)
390 2obl_A ESCN; ATPase, hydrolase 97.0 0.00051 1.7E-08 46.0 3.2 24 9-32 72-95 (347)
391 1m7g_A Adenylylsulfate kinase; 97.0 0.00053 1.8E-08 42.3 3.1 22 8-29 25-46 (211)
392 2qz4_A Paraplegin; AAA+, SPG7, 97.0 0.00053 1.8E-08 43.3 3.2 23 8-30 39-61 (262)
393 2og2_A Putative signal recogni 97.0 0.0005 1.7E-08 46.2 3.2 23 8-30 157-179 (359)
394 2pt7_A CAG-ALFA; ATPase, prote 97.0 0.00039 1.3E-08 46.2 2.6 22 10-31 173-194 (330)
395 3b9p_A CG5977-PA, isoform A; A 97.0 0.00056 1.9E-08 44.2 3.3 23 8-30 54-76 (297)
396 3nwj_A ATSK2; P loop, shikimat 97.0 0.00049 1.7E-08 44.0 2.9 22 9-30 49-70 (250)
397 3kta_A Chromosome segregation 97.0 0.00054 1.9E-08 41.1 3.0 21 10-30 28-48 (182)
398 2yhs_A FTSY, cell division pro 97.0 0.00052 1.8E-08 48.1 3.2 23 8-30 293-315 (503)
399 3t15_A Ribulose bisphosphate c 97.0 0.00078 2.7E-08 43.8 3.8 23 8-30 36-58 (293)
400 2f6r_A COA synthase, bifunctio 96.9 0.00069 2.4E-08 43.9 3.5 23 7-29 74-96 (281)
401 4eaq_A DTMP kinase, thymidylat 96.9 0.00091 3.1E-08 42.1 3.9 24 7-30 25-48 (229)
402 3szr_A Interferon-induced GTP- 96.9 0.00033 1.1E-08 50.1 2.1 23 10-32 47-69 (608)
403 3syl_A Protein CBBX; photosynt 96.9 0.00081 2.8E-08 43.6 3.8 22 8-29 67-88 (309)
404 1p9r_A General secretion pathw 96.9 0.00059 2E-08 46.7 3.1 22 10-31 169-190 (418)
405 1l8q_A Chromosomal replication 96.9 0.00062 2.1E-08 44.6 3.1 22 9-30 38-59 (324)
406 3cf0_A Transitional endoplasmi 96.9 0.00065 2.2E-08 44.3 3.1 22 9-30 50-71 (301)
407 2qby_A CDC6 homolog 1, cell di 96.9 0.00064 2.2E-08 45.0 3.0 23 8-30 45-67 (386)
408 2dpy_A FLII, flagellum-specifi 96.9 0.0007 2.4E-08 46.7 3.2 24 9-32 158-181 (438)
409 1d2n_A N-ethylmaleimide-sensit 96.9 0.0011 3.8E-08 42.4 4.0 25 6-30 62-86 (272)
410 1nlf_A Regulatory protein REPA 96.9 0.00068 2.3E-08 43.6 3.0 21 10-30 32-52 (279)
411 1nij_A Hypothetical protein YJ 96.9 0.00051 1.7E-08 45.3 2.4 23 10-32 6-28 (318)
412 1ofh_A ATP-dependent HSL prote 96.9 0.00078 2.7E-08 43.5 3.2 23 8-30 50-72 (310)
413 2oap_1 GSPE-2, type II secreti 96.9 0.00066 2.3E-08 47.6 3.0 22 10-31 262-283 (511)
414 1yqt_A RNAse L inhibitor; ATP- 96.8 0.00082 2.8E-08 47.4 3.4 23 9-31 48-70 (538)
415 2dr3_A UPF0273 protein PH0284; 96.8 0.00075 2.6E-08 42.2 3.0 21 10-30 25-45 (247)
416 1yrb_A ATP(GTP)binding protein 96.8 0.001 3.4E-08 42.2 3.6 23 7-29 13-35 (262)
417 4fcw_A Chaperone protein CLPB; 96.8 0.0014 4.8E-08 42.5 4.2 22 9-30 48-69 (311)
418 1q3t_A Cytidylate kinase; nucl 96.8 0.0011 3.8E-08 41.6 3.5 26 5-30 13-38 (236)
419 3euj_A Chromosome partition pr 96.8 0.00085 2.9E-08 46.8 3.2 21 10-30 31-51 (483)
420 3l82_B F-box only protein 4; T 96.8 0.0011 3.8E-08 41.7 3.3 45 64-108 109-169 (227)
421 1fnn_A CDC6P, cell division co 96.8 0.0009 3.1E-08 44.5 3.2 22 10-31 46-67 (389)
422 3zvl_A Bifunctional polynucleo 96.8 0.00085 2.9E-08 45.8 3.0 23 8-30 258-280 (416)
423 1tue_A Replication protein E1; 96.8 0.00076 2.6E-08 42.1 2.5 22 8-29 58-79 (212)
424 3b60_A Lipid A export ATP-bind 96.8 0.00084 2.9E-08 47.7 3.0 22 10-31 371-392 (582)
425 1azs_C GS-alpha; complex (lyas 96.8 0.0012 4.2E-08 45.0 3.7 24 6-29 38-61 (402)
426 1xwi_A SKD1 protein; VPS4B, AA 96.8 0.00096 3.3E-08 44.0 3.1 23 9-31 46-68 (322)
427 1svm_A Large T antigen; AAA+ f 96.8 0.00098 3.4E-08 45.1 3.1 23 8-30 169-191 (377)
428 3eie_A Vacuolar protein sortin 96.8 0.0011 3.7E-08 43.6 3.3 23 8-30 51-73 (322)
429 3b5x_A Lipid A export ATP-bind 96.7 0.00099 3.4E-08 47.3 3.2 22 10-31 371-392 (582)
430 2qen_A Walker-type ATPase; unk 96.7 0.0011 3.6E-08 43.5 3.2 22 10-31 33-54 (350)
431 3crm_A TRNA delta(2)-isopenten 96.7 0.0013 4.4E-08 43.7 3.6 23 8-30 5-27 (323)
432 3pxg_A Negative regulator of g 96.7 0.00092 3.1E-08 46.3 2.9 23 8-30 201-223 (468)
433 3co5_A Putative two-component 96.7 0.00044 1.5E-08 40.2 1.1 23 8-30 27-49 (143)
434 2v1u_A Cell division control p 96.7 0.00092 3.2E-08 44.3 2.8 23 8-30 44-66 (387)
435 1sxj_E Activator 1 40 kDa subu 96.7 0.00087 3E-08 44.3 2.6 20 11-30 39-58 (354)
436 3uk6_A RUVB-like 2; hexameric 96.7 0.0011 3.9E-08 43.9 3.2 22 9-30 71-92 (368)
437 4b4t_K 26S protease regulatory 96.7 0.0011 3.8E-08 45.6 3.2 22 9-30 207-228 (428)
438 4b4t_M 26S protease regulatory 96.7 0.0012 4.2E-08 45.4 3.2 23 8-30 215-237 (434)
439 3ozx_A RNAse L inhibitor; ATP 96.7 0.0011 3.7E-08 46.9 3.0 22 10-31 27-48 (538)
440 3pfi_A Holliday junction ATP-d 96.7 0.0011 3.9E-08 43.5 3.0 22 9-30 56-77 (338)
441 1sxj_C Activator 1 40 kDa subu 96.7 0.0012 4.1E-08 43.6 3.1 22 10-31 48-69 (340)
442 3j16_B RLI1P; ribosome recycli 96.7 0.0012 4.1E-08 47.3 3.2 22 10-31 105-126 (608)
443 2fna_A Conserved hypothetical 96.7 0.0011 3.9E-08 43.3 3.0 22 10-31 32-53 (357)
444 2qmh_A HPR kinase/phosphorylas 96.7 0.0013 4.6E-08 40.8 3.0 25 8-32 34-58 (205)
445 3ake_A Cytidylate kinase; CMP 96.7 0.0014 4.9E-08 39.9 3.2 21 10-30 4-24 (208)
446 2grj_A Dephospho-COA kinase; T 96.7 0.0016 5.4E-08 40.0 3.4 24 8-31 12-35 (192)
447 1sxj_D Activator 1 41 kDa subu 96.7 0.0013 4.4E-08 43.3 3.1 21 10-30 60-80 (353)
448 4b4t_L 26S protease subunit RP 96.6 0.0013 4.5E-08 45.3 3.2 23 8-30 215-237 (437)
449 2yl4_A ATP-binding cassette SU 96.6 0.00089 3.1E-08 47.7 2.4 22 10-31 372-393 (595)
450 3foz_A TRNA delta(2)-isopenten 96.6 0.0018 6.1E-08 42.8 3.7 24 7-30 9-32 (316)
451 1pzn_A RAD51, DNA repair and r 96.6 0.0012 4.2E-08 44.1 3.0 22 10-31 133-154 (349)
452 2px0_A Flagellar biosynthesis 96.6 0.0013 4.4E-08 43.1 3.0 22 8-29 105-126 (296)
453 2bjv_A PSP operon transcriptio 96.6 0.0014 4.6E-08 41.8 3.0 24 8-31 29-52 (265)
454 3hws_A ATP-dependent CLP prote 96.6 0.0013 4.6E-08 43.8 3.0 23 8-30 51-73 (363)
455 1um8_A ATP-dependent CLP prote 96.6 0.0013 4.5E-08 44.0 3.0 23 8-30 72-94 (376)
456 2qby_B CDC6 homolog 3, cell di 96.6 0.0013 4.6E-08 43.7 3.0 22 9-30 46-67 (384)
457 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.0015 5.2E-08 38.4 2.9 19 11-29 26-44 (149)
458 2r62_A Cell division protease 96.6 0.00055 1.9E-08 43.6 1.1 21 10-30 46-66 (268)
459 1yqt_A RNAse L inhibitor; ATP- 96.6 0.0016 5.6E-08 45.9 3.4 23 10-32 314-336 (538)
460 3qf4_B Uncharacterized ABC tra 96.6 0.0011 3.8E-08 47.2 2.6 22 9-30 382-403 (598)
461 3bk7_A ABC transporter ATP-bin 96.6 0.0015 5.1E-08 46.8 3.2 22 10-31 119-140 (607)
462 2qp9_X Vacuolar protein sortin 96.6 0.0015 5.3E-08 43.6 3.1 22 9-30 85-106 (355)
463 2j37_W Signal recognition part 96.6 0.0024 8.1E-08 44.8 4.1 23 7-29 100-122 (504)
464 3d3q_A TRNA delta(2)-isopenten 96.6 0.0015 5.1E-08 43.7 3.0 22 9-30 8-29 (340)
465 4b4t_J 26S protease regulatory 96.6 0.0016 5.4E-08 44.5 3.1 23 8-30 182-204 (405)
466 1vma_A Cell division protein F 96.6 0.0017 5.8E-08 42.7 3.2 22 8-29 104-125 (306)
467 3ozx_A RNAse L inhibitor; ATP 96.6 0.0014 4.9E-08 46.2 3.0 23 10-32 296-318 (538)
468 3d8b_A Fidgetin-like protein 1 96.6 0.0017 5.7E-08 43.4 3.2 23 8-30 117-139 (357)
469 3m6a_A ATP-dependent protease 96.6 0.0015 5.1E-08 46.1 3.1 21 10-30 110-130 (543)
470 3bk7_A ABC transporter ATP-bin 96.5 0.0018 6.1E-08 46.4 3.4 23 10-32 384-406 (607)
471 3a8t_A Adenylate isopentenyltr 96.5 0.0018 6.3E-08 43.2 3.3 21 10-30 42-62 (339)
472 2qgz_A Helicase loader, putati 96.5 0.002 6.8E-08 42.3 3.4 23 8-30 152-174 (308)
473 3tqf_A HPR(Ser) kinase; transf 96.5 0.0022 7.6E-08 39.0 3.3 24 9-32 17-40 (181)
474 1c9k_A COBU, adenosylcobinamid 96.5 0.0019 6.5E-08 39.4 3.0 21 11-31 2-22 (180)
475 2r44_A Uncharacterized protein 96.5 0.00093 3.2E-08 43.9 1.7 22 9-30 47-68 (331)
476 2ga8_A Hypothetical 39.9 kDa p 96.5 0.0027 9.4E-08 42.7 3.9 22 8-29 24-45 (359)
477 2z4s_A Chromosomal replication 96.5 0.0017 5.9E-08 44.6 3.1 22 9-30 131-152 (440)
478 3exa_A TRNA delta(2)-isopenten 96.5 0.0021 7.1E-08 42.6 3.3 22 10-31 5-26 (322)
479 1tf7_A KAIC; homohexamer, hexa 96.5 0.0017 5.8E-08 45.6 2.9 19 11-29 42-60 (525)
480 4a82_A Cystic fibrosis transme 96.5 0.00093 3.2E-08 47.4 1.6 21 10-30 369-389 (578)
481 3pvs_A Replication-associated 96.5 0.0022 7.4E-08 44.3 3.4 22 9-30 51-72 (447)
482 3nbx_X ATPase RAVA; AAA+ ATPas 96.5 0.0016 5.5E-08 45.6 2.8 22 9-30 42-63 (500)
483 2r8r_A Sensor protein; KDPD, P 96.5 0.0025 8.7E-08 40.3 3.4 23 7-29 5-27 (228)
484 3lda_A DNA repair protein RAD5 96.5 0.0018 6.2E-08 44.1 2.9 20 10-29 180-199 (400)
485 4ido_A Atlastin-1; GTPase, GTP 96.4 0.0075 2.6E-07 41.8 5.9 62 7-68 66-151 (457)
486 2ce7_A Cell division protein F 96.4 0.0021 7.1E-08 44.8 3.2 22 9-30 50-71 (476)
487 2zts_A Putative uncharacterize 96.4 0.0023 7.8E-08 40.0 3.2 20 10-29 32-51 (251)
488 3vfd_A Spastin; ATPase, microt 96.4 0.0021 7.3E-08 43.3 3.2 24 8-31 148-171 (389)
489 1hqc_A RUVB; extended AAA-ATPa 96.4 0.0012 4.2E-08 43.0 2.0 22 9-30 39-60 (324)
490 3j16_B RLI1P; ribosome recycli 96.4 0.0021 7.1E-08 46.1 3.2 22 11-32 381-402 (608)
491 2dhr_A FTSH; AAA+ protein, hex 96.4 0.0021 7E-08 45.1 3.1 21 10-30 66-86 (499)
492 3qf4_A ABC transporter, ATP-bi 96.4 0.0013 4.4E-08 46.8 2.1 21 10-30 371-391 (587)
493 4b4t_I 26S protease regulatory 96.4 0.0023 7.8E-08 44.1 3.1 23 8-30 216-238 (437)
494 2iw3_A Elongation factor 3A; a 96.4 0.0026 8.9E-08 47.9 3.6 23 10-32 463-485 (986)
495 3gmt_A Adenylate kinase; ssgci 96.4 0.0029 1E-07 40.0 3.4 24 7-30 7-30 (230)
496 1iqp_A RFCS; clamp loader, ext 96.4 0.0028 9.5E-08 41.1 3.4 22 10-31 48-69 (327)
497 1g41_A Heat shock protein HSLU 96.4 0.002 6.9E-08 44.5 2.8 23 8-30 50-72 (444)
498 1g8p_A Magnesium-chelatase 38 96.4 0.0011 3.7E-08 43.6 1.5 22 9-30 46-67 (350)
499 3cr8_A Sulfate adenylyltranfer 96.4 0.0017 5.8E-08 46.0 2.5 24 7-30 368-391 (552)
500 2ocp_A DGK, deoxyguanosine kin 96.4 0.0029 9.8E-08 39.8 3.3 22 9-30 3-24 (241)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.94 E-value=3.4e-27 Score=148.94 Aligned_cols=104 Identities=40% Similarity=0.656 Sum_probs=83.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
+.+.+||+++|++|||||||++||..+.|...+.||.+.++....+..++..+.++|||++|+++|..+++.|++.++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 34679999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred EE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++ ++++||+++. ....++|++||.
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVg 125 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVG 125 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEE
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 99 8899998854 234678988873
No 2
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.90 E-value=1e-22 Score=124.57 Aligned_cols=108 Identities=44% Similarity=0.817 Sum_probs=92.3
Q ss_pred CCCCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcC
Q 033918 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (109)
Q Consensus 1 ~~~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (109)
|+...+..+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 82 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 82 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence 45566788999999999999999999999999988888888888887888888888899999999999999999999999
Q ss_pred CcEEEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 81 AHGIIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 81 ~~~iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+|++++ +++.+|+.+. ....++|+++|+
T Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 122 (186)
T 2bme_A 83 AAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 122 (186)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 999998 6677776543 224688988875
No 3
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.90 E-value=8.2e-23 Score=124.19 Aligned_cols=108 Identities=64% Similarity=1.004 Sum_probs=88.7
Q ss_pred CCCCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcC
Q 033918 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (109)
Q Consensus 1 ~~~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (109)
|..+.+..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 45667789999999999999999999999999888888988888888888888888999999999999999999999999
Q ss_pred CcEEEE----ecccchhhhc-------cCCCCCCEEEee
Q 033918 81 AHGIIV----GDLNSFLQQS-------FSSSSTPFCLFL 108 (109)
Q Consensus 81 ~~~iv~----~~~~s~~~~~-------~~~~~~P~i~v~ 108 (109)
+|++++ +++.+|+.+. ....++|+++|+
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~ 120 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVG 120 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 999999 6677777633 234578988875
No 4
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.89 E-value=1.2e-22 Score=126.40 Aligned_cols=108 Identities=73% Similarity=1.154 Sum_probs=91.9
Q ss_pred CCCCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcC
Q 033918 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (109)
Q Consensus 1 ~~~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (109)
|+.+.+..+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 80 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence 55567788999999999999999999999999988888998888887888888888999999999999999999999999
Q ss_pred CcEEEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 81 AHGIIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 81 ~~~iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+|++++ +++.+|+.+. ....++|+++|+
T Consensus 81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 120 (206)
T 2bcg_Y 81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 120 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 999998 6667776632 223578888875
No 5
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.89 E-value=2.4e-23 Score=127.22 Aligned_cols=108 Identities=61% Similarity=1.033 Sum_probs=67.9
Q ss_pred CCCCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcC
Q 033918 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (109)
Q Consensus 1 ~~~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (109)
|+...+..+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (183)
T 2fu5_C 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 80 (183)
T ss_dssp --CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhc
Confidence 55667789999999999999999999999998888888998888887788888888999999999999999999999999
Q ss_pred CcEEEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 81 AHGIIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 81 ~~~iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+|++++ +++.+|+.+. ....++|+++|+
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 120 (183)
T 2fu5_C 81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 120 (183)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 999999 6677877643 123578988875
No 6
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.89 E-value=2.1e-22 Score=124.10 Aligned_cols=107 Identities=80% Similarity=1.216 Sum_probs=92.1
Q ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCC
Q 033918 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA 81 (109)
Q Consensus 2 ~~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (109)
++..+..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++..++..+++.+
T Consensus 10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (196)
T 3tkl_A 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 89 (196)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence 44556789999999999999999999999999888899998888888888888889999999999999999999999999
Q ss_pred cEEEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 82 HGIIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 82 ~~iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
|++++ +++.+|+.+. ....++|+++|+
T Consensus 90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~ 128 (196)
T 3tkl_A 90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 128 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 99999 6677776643 223578988875
No 7
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=2e-22 Score=125.64 Aligned_cols=105 Identities=50% Similarity=0.852 Sum_probs=90.7
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
+.+..+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|+
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 45678999999999999999999999999988888999888888888888888999999999999999999999999999
Q ss_pred EEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 84 IIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+++ +++.+|+.+. .....+|+++|+
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 138 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVG 138 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 999 6677776543 123578888874
No 8
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=126.05 Aligned_cols=105 Identities=53% Similarity=0.902 Sum_probs=81.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
+.+..+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|+
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence 44568999999999999999999999999888888888888877888888888999999999999999999999999999
Q ss_pred EEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 84 IIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+++ +++.+|+.+. ....++|+++|+
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 141 (201)
T 2hup_A 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIG 141 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 999 6677877643 123678988875
No 9
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.89 E-value=4.6e-22 Score=120.85 Aligned_cols=107 Identities=33% Similarity=0.569 Sum_probs=89.3
Q ss_pred CCCCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcC
Q 033918 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (109)
Q Consensus 1 ~~~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (109)
|.......+||+++|++|+|||||++++.++.+...+.++.+..+. ..+..++..+.+.+||++|++++..++..+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 80 (181)
T 2fn4_A 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80 (181)
T ss_dssp --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHH
T ss_pred CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhh
Confidence 4556677899999999999999999999999998888998887665 667788888899999999999999999999999
Q ss_pred CcEEEE----ecccchhhhc---------cCCCCCCEEEee
Q 033918 81 AHGIIV----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 81 ~~~iv~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+|++++ +++.+|+.+. ....++|+++|+
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 121 (181)
T 2fn4_A 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 121 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEE
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 999998 6667776632 124578998875
No 10
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=5.5e-22 Score=121.99 Aligned_cols=107 Identities=49% Similarity=0.804 Sum_probs=90.5
Q ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCC
Q 033918 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA 81 (109)
Q Consensus 2 ~~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (109)
..+....+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+
T Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (195)
T 1x3s_A 9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGA 88 (195)
T ss_dssp CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTC
T ss_pred ccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 34445689999999999999999999999998888899988888878888888889999999999999999999999999
Q ss_pred cEEEE----ecccchhhhc-------cC--CCCCCEEEee
Q 033918 82 HGIIV----GDLNSFLQQS-------FS--SSSTPFCLFL 108 (109)
Q Consensus 82 ~~iv~----~~~~s~~~~~-------~~--~~~~P~i~v~ 108 (109)
|++++ +++.+|+.+. .. ...+|+++|+
T Consensus 89 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~ 128 (195)
T 1x3s_A 89 QGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 128 (195)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEE
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEE
Confidence 99999 5666776532 11 2578888875
No 11
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.89 E-value=4.1e-22 Score=122.77 Aligned_cols=106 Identities=54% Similarity=0.855 Sum_probs=86.7
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCc
Q 033918 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (109)
Q Consensus 3 ~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 82 (109)
......+||+++|++|||||||++++.++++...+.++.+.++....+..++..+.+.+||++|++++..++..+++.+|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 34567899999999999999999999999988888888888888788888888899999999999999999999999999
Q ss_pred EEEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 83 GIIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 83 ~iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++ +++.+|+.+. ....++|+++|+
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~ 133 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIG 133 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 9999 6677777643 123588988875
No 12
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.88 E-value=5.7e-22 Score=121.03 Aligned_cols=105 Identities=32% Similarity=0.546 Sum_probs=89.6
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCc
Q 033918 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (109)
Q Consensus 3 ~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 82 (109)
+.....+||+++|++|||||||++++.++.+...+.++.+..+ ......++..+.+.+||++|++++..++..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 91 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD 91 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 3455689999999999999999999999999889999888766 567788888899999999999999999999999999
Q ss_pred EEEE----ecccchhhhc---------cCCCCCCEEEee
Q 033918 83 GIIV----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 83 ~iv~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
++++ ++++||+.+. ....++|+++|+
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~ 130 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 9999 7777887643 234688998875
No 13
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.88 E-value=8e-22 Score=120.20 Aligned_cols=102 Identities=27% Similarity=0.474 Sum_probs=86.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
...+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4689999999999999999999999999999999988766 577788888899999999999999999999999999999
Q ss_pred E----ecccchhhhc---------cCCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+ +++++|+.+. ....++|+++|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~ 118 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG 118 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 8 7778887743 223578998875
No 14
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.88 E-value=6.7e-22 Score=119.94 Aligned_cols=105 Identities=48% Similarity=0.877 Sum_probs=89.9
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
..+..+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 45578999999999999999999999999888888888888877788888888999999999999999999999999999
Q ss_pred EEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 84 IIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+++ +++.+|+.+. ....++|+++|+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 127 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 127 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 999 6666776533 223578988875
No 15
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.88 E-value=1e-21 Score=121.02 Aligned_cols=105 Identities=42% Similarity=0.743 Sum_probs=89.5
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
..+..+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 100 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG 100 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 45568999999999999999999999999888888888888887788888888999999999999999999999999999
Q ss_pred EEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 84 IIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+++ +++.+|+.+. ....++|+++|+
T Consensus 101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~ 137 (193)
T 2oil_A 101 ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVG 137 (193)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 988 6666765532 223578988875
No 16
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=7.2e-22 Score=121.83 Aligned_cols=106 Identities=33% Similarity=0.559 Sum_probs=89.4
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCc
Q 033918 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (109)
Q Consensus 3 ~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 82 (109)
...+..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++....+.+||++|++++...+..+++.+|
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 34567899999999999999999999999988888999988887777888878899999999999999999999999999
Q ss_pred EEEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 83 GIIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 83 ~iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++ +++.+|+.+. .....+|+++|+
T Consensus 98 ~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~ 135 (192)
T 2fg5_A 98 AAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAG 135 (192)
T ss_dssp EEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 9998 6777777643 123478988875
No 17
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.88 E-value=3.3e-22 Score=124.91 Aligned_cols=107 Identities=25% Similarity=0.482 Sum_probs=86.0
Q ss_pred CCCCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcC
Q 033918 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (109)
Q Consensus 1 ~~~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (109)
|+......+||+++|++|||||||++++.++.+...+.++.+.++. ..+.+++..+.+.+||++|++++..++..+++.
T Consensus 21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 99 (205)
T 1gwn_A 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD 99 (205)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEESSSSEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-EEEEECCEEEEEEEEeCCCcHhhhHHHHhhccC
Confidence 4455667899999999999999999999999998888888876653 566777778999999999999999999999999
Q ss_pred CcEEEE----ecccchhhh-c-------cCCCCCCEEEee
Q 033918 81 AHGIIV----GDLNSFLQQ-S-------FSSSSTPFCLFL 108 (109)
Q Consensus 81 ~~~iv~----~~~~s~~~~-~-------~~~~~~P~i~v~ 108 (109)
+|++++ +++.||+++ . ....++|+++|.
T Consensus 100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~ 139 (205)
T 1gwn_A 100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVG 139 (205)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Confidence 999998 677788765 2 122578988874
No 18
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.88 E-value=8.6e-22 Score=118.49 Aligned_cols=104 Identities=43% Similarity=0.650 Sum_probs=89.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
+...+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 34689999999999999999999999998888888888888778888888889999999999999999999999999999
Q ss_pred EE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++ +++.+|+.+. ....++|+++|.
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~ 118 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSG 118 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 99 6667776633 224578888874
No 19
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=1e-21 Score=118.16 Aligned_cols=101 Identities=38% Similarity=0.666 Sum_probs=87.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
.+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+|++++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 6899999999999999999999999888888998888877888888888999999999999999999999999999998
Q ss_pred ---ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 ---GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+++.+|+.+. ....++|+++|+
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 115 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVG 115 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EecCChHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 6667776643 223578888875
No 20
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.88 E-value=1.4e-21 Score=120.17 Aligned_cols=105 Identities=52% Similarity=0.921 Sum_probs=89.7
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
..+..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 44568999999999999999999999999888888888888877777888888999999999999999999999999999
Q ss_pred EEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 84 IIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+++ +++.+|+.+. ....++|+++|+
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 134 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVG 134 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 998 6677776643 123578988875
No 21
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.88 E-value=5.3e-22 Score=119.31 Aligned_cols=104 Identities=36% Similarity=0.674 Sum_probs=88.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
.+..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|++
T Consensus 2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 35689999999999999999999999998888899888888888888888889999999999999999999999999999
Q ss_pred EE----ecccchhhhc-------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS-------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~-------~~~~~~P~i~v~ 108 (109)
++ +++.+|+.+. ....++|+++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~ 116 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQ 116 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 98 6666776643 112578988875
No 22
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.88 E-value=5.6e-22 Score=124.49 Aligned_cols=104 Identities=23% Similarity=0.415 Sum_probs=85.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
.....+||+++|++|||||||++++.++.+...+.++.+.++. ..+.+++..+.+.+||++|++++..++..+++.+|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 3446899999999999999999999999999999999887664 566777788999999999999999999999999999
Q ss_pred EEE----ecccchhh-hc-------cCCCCCCEEEee
Q 033918 84 IIV----GDLNSFLQ-QS-------FSSSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~-~~-------~~~~~~P~i~v~ 108 (109)
+++ ++++||++ +. ....++|+++|.
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~ 138 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIG 138 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 999 77888887 22 223588998874
No 23
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.88 E-value=1.5e-21 Score=118.48 Aligned_cols=105 Identities=41% Similarity=0.745 Sum_probs=86.1
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
..+..+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 35668999999999999999999999999888888998888877888888888999999999999999999999999999
Q ss_pred EEE----ecccchhhhc------------cCCCCCCEEEee
Q 033918 84 IIV----GDLNSFLQQS------------FSSSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~~~------------~~~~~~P~i~v~ 108 (109)
+++ +++.+|+.+. ....++|+++|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~ 123 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEE
Confidence 988 6666776532 112678998875
No 24
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.88 E-value=6.3e-22 Score=122.91 Aligned_cols=108 Identities=35% Similarity=0.691 Sum_probs=88.2
Q ss_pred CCCCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcC
Q 033918 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (109)
Q Consensus 1 ~~~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (109)
|.......+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (207)
T 1vg8_A 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80 (207)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT
T ss_pred CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC
Confidence 55566788999999999999999999999999888889998888887888888888999999999999999999999999
Q ss_pred CcEEEE----ecccchhhhcc------------CCCCCCEEEee
Q 033918 81 AHGIIV----GDLNSFLQQSF------------SSSSTPFCLFL 108 (109)
Q Consensus 81 ~~~iv~----~~~~s~~~~~~------------~~~~~P~i~v~ 108 (109)
+|++++ +++.+|+.+.. ...++|+++|+
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~ 124 (207)
T 1vg8_A 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 124 (207)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEE
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 999998 56677765431 11478998875
No 25
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.88 E-value=1.2e-21 Score=120.38 Aligned_cols=103 Identities=43% Similarity=0.809 Sum_probs=88.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccc-cchhhhhcCCcEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-TITSSYYRGAHGI 84 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~i 84 (109)
...+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++. .++..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 457999999999999999999999999988888888888888888888888999999999999988 8899999999999
Q ss_pred EE----ecccchhhhc---------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
++ +++.||+.+. ....++|+++|+
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 134 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVG 134 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 99 6666776632 224689998875
No 26
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.88 E-value=1.1e-21 Score=121.64 Aligned_cols=105 Identities=50% Similarity=0.911 Sum_probs=90.0
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
..+..+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 44578999999999999999999999999888888888888877888888888999999999999999999999999999
Q ss_pred EEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 84 IIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+++ +++.+|+.+. ....++|+++|+
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 120 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG 120 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 998 6677776643 122578988875
No 27
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.88 E-value=1.6e-21 Score=118.70 Aligned_cols=105 Identities=39% Similarity=0.635 Sum_probs=88.8
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
.....+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 34568999999999999999999999999888888888888887888888888999999999999999999999999999
Q ss_pred EEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 84 IIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+++ +++.+|+.+. ....++|+++|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~ 124 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAG 124 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 999 6677776633 223578888875
No 28
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.87 E-value=2.2e-21 Score=116.79 Aligned_cols=104 Identities=36% Similarity=0.581 Sum_probs=89.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
....+||+++|++|+|||||++++.++.+...+.++.+.++....+...+....+.+||++|++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35679999999999999999999999998888899988888777888888889999999999999999999999999999
Q ss_pred EE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++ +++.+|+.+. .....+|+++|.
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~ 118 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAG 118 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 88 6667776643 224678888764
No 29
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.87 E-value=6.5e-22 Score=119.14 Aligned_cols=102 Identities=58% Similarity=0.994 Sum_probs=81.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
..+||+++|++|+|||||++++.++++...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999999888888888877877788888888999999999999999999999999999998
Q ss_pred ----ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 ----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+++.+|+.+. ....++|+++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 115 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVG 115 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 5666776533 123578988875
No 30
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.2e-21 Score=123.43 Aligned_cols=104 Identities=52% Similarity=0.823 Sum_probs=83.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
.+..+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 45679999999999999999999999999888888888888878888888889999999999999999999999999999
Q ss_pred EE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++ +++.+|+.+. ....++|+++|+
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~ 125 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIG 125 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEE
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 98 6777877633 123578988875
No 31
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.87 E-value=1.6e-21 Score=120.31 Aligned_cols=103 Identities=25% Similarity=0.486 Sum_probs=87.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
....+||+++|++|||||||++++.++.+...+.++.+..+. ..+..++..+.+.+||++|++++..++..+++.+|++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 456799999999999999999999999998888999887665 4667788889999999999999999999999999999
Q ss_pred EE----ecccchhhh-c-------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQ-S-------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~-~-------~~~~~~P~i~v~ 108 (109)
++ +++.+|+.+ . ....++|+++|.
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~ 134 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVG 134 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 99 777888774 1 223578998875
No 32
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.87 E-value=7.1e-22 Score=122.70 Aligned_cols=104 Identities=47% Similarity=0.820 Sum_probs=79.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
.+..+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 45689999999999999999999999998888888888888878888888889999999999999999999999999999
Q ss_pred EE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++ +++.+|+.+. ....++|+++|+
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 137 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCG 137 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 99 6677777643 123578988875
No 33
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.87 E-value=6.3e-22 Score=122.18 Aligned_cols=105 Identities=50% Similarity=0.849 Sum_probs=83.3
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
..+..+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 45678999999999999999999999999888888888888887888888888999999999999999999999999999
Q ss_pred EEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 84 IIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+++ +++.+|+.+. ....++|+++|+
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~ 138 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 999 6677777642 223578988875
No 34
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.87 E-value=4.5e-22 Score=119.97 Aligned_cols=104 Identities=36% Similarity=0.710 Sum_probs=82.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
.+..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45789999999999999999999999998888889888888777888888889999999999999999999999999999
Q ss_pred EE----ecccchhhhcc--------CCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQSF--------SSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~~--------~~~~~P~i~v~ 108 (109)
++ +++.+|+.+.. ...++|+++|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 118 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG 118 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 98 66777766431 12478888875
No 35
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.87 E-value=1.3e-21 Score=119.88 Aligned_cols=104 Identities=24% Similarity=0.450 Sum_probs=86.0
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
.....+||+++|++|||||||++++.++.+...+.++.+..+. ..+.+++..+.+.+||++|++++..++..+++.+|+
T Consensus 3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 81 (184)
T 1m7b_A 3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 81 (184)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence 3567899999999999999999999999998888888876653 566777788999999999999999999999999999
Q ss_pred EEE----ecccchhhh-c-------cCCCCCCEEEee
Q 033918 84 IIV----GDLNSFLQQ-S-------FSSSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~~-~-------~~~~~~P~i~v~ 108 (109)
+++ +++.||+++ . ....++|+++|.
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~ 118 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVG 118 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Confidence 998 677788765 2 223578988874
No 36
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.87 E-value=5.8e-22 Score=120.53 Aligned_cols=108 Identities=38% Similarity=0.732 Sum_probs=74.4
Q ss_pred CCCCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeC-CeEEEEEEEeCCCccccccchhhhhc
Q 033918 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYR 79 (109)
Q Consensus 1 ~~~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~ 79 (109)
|+......+||+++|++|+|||||++++.++.+...+.++.+.++....+..+ +....+.+||++|++++...+..+++
T Consensus 1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (182)
T 1ky3_A 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR 80 (182)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST
T ss_pred CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh
Confidence 55566778999999999999999999999999888888888877777777776 55688999999999999999999999
Q ss_pred CCcEEEE----ecccchhhhc------------cCCCCCCEEEee
Q 033918 80 GAHGIIV----GDLNSFLQQS------------FSSSSTPFCLFL 108 (109)
Q Consensus 80 ~~~~iv~----~~~~s~~~~~------------~~~~~~P~i~v~ 108 (109)
.+|++++ +++.+|+.+. ....++|+++|+
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 125 (182)
T 1ky3_A 81 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILG 125 (182)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEE
T ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEE
Confidence 9999999 6667776532 112678999875
No 37
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=6.6e-22 Score=122.60 Aligned_cols=105 Identities=40% Similarity=0.720 Sum_probs=77.7
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
.....+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 34568999999999999999999999999888888888888877888888888999999999999999999999999999
Q ss_pred EEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 84 IIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+++ +++.+|+.+. ....++|+++|+
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 140 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVG 140 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEE
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 999 6667777643 123478998875
No 38
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.87 E-value=1.9e-21 Score=117.92 Aligned_cols=103 Identities=42% Similarity=0.664 Sum_probs=88.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
...+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 35699999999999999999999999998888898888888888888888899999999999999999999999999999
Q ss_pred E----ecccchhhhc--------cCCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+ +++.+|+.+. ....++|+++|+
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 126 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVG 126 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 9 5666776643 123578888875
No 39
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.87 E-value=2.7e-21 Score=118.55 Aligned_cols=105 Identities=41% Similarity=0.788 Sum_probs=87.5
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEE-EEEEEeCCe---------EEEEEEEeCCCccccccc
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFK-IRTVEQDGK---------TIKLQIWDTAGQERFRTI 73 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~~~~~ 73 (109)
+.+..+||+++|++|+|||||++++.++.+...+.++.+.++. ...+..++. .+.+.+||++|++++...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 5677899999999999999999999999988888888887776 556666655 789999999999999999
Q ss_pred hhhhhcCCcEEEE----ecccchhhhc---------cCCCCCCEEEee
Q 033918 74 TSSYYRGAHGIIV----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 74 ~~~~~~~~~~iv~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+..+++.+|++++ +++.+|+.+. ....++|+++|+
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 134 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCG 134 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEE
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 9999999999998 5667776632 112588998875
No 40
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=2.9e-21 Score=117.42 Aligned_cols=105 Identities=46% Similarity=0.919 Sum_probs=80.5
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCc
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 82 (109)
..+..+||+++|++|+|||||++++.++.+. ..+.++.+.++....+..++..+.+.+||++|++++...+..+++.+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 4567899999999999999999999999884 467788888887777788888899999999999999999999999999
Q ss_pred EEEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 83 GIIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 83 ~iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++ +++.+|+.+. ....++|+++|+
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 123 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLG 123 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 9999 6666766532 123678998875
No 41
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=8.8e-23 Score=125.78 Aligned_cols=106 Identities=50% Similarity=0.913 Sum_probs=91.2
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCc
Q 033918 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (109)
Q Consensus 3 ~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 82 (109)
.+.+..+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++..++..+++.+|
T Consensus 18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (191)
T 3dz8_A 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAM 97 (191)
T ss_dssp TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCC
Confidence 45567899999999999999999999999988888888888888788888877889999999999999999999999999
Q ss_pred EEEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 83 GIIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 83 ~iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++ +++.+|+.+. ....++|+++|+
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 135 (191)
T 3dz8_A 98 GFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVG 135 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 9999 6677887643 123588988875
No 42
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.87 E-value=1.6e-22 Score=125.38 Aligned_cols=107 Identities=80% Similarity=1.216 Sum_probs=89.1
Q ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCC
Q 033918 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA 81 (109)
Q Consensus 2 ~~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (109)
++..+..+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++..++..+++.+
T Consensus 27 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 106 (199)
T 3l0i_B 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 106 (199)
T ss_dssp -CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCC
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcC
Confidence 34556789999999999999999999999998888888888888888888888889999999999999999999999999
Q ss_pred cEEEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 82 HGIIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 82 ~~iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
|++++ +++.+|+.+. ....++|+++|+
T Consensus 107 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~ 145 (199)
T 3l0i_B 107 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 145 (199)
T ss_dssp SEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEE
Confidence 99999 7778887643 223478988875
No 43
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.87 E-value=2.4e-21 Score=120.95 Aligned_cols=103 Identities=29% Similarity=0.541 Sum_probs=85.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
....+||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 45689999999999999999999999999888888887655 35667778889999999999999999999999999999
Q ss_pred EE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++ +++++|+++. ....++|+++|.
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 120 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVG 120 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 99 6777887643 223489999875
No 44
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=4.4e-21 Score=119.56 Aligned_cols=104 Identities=58% Similarity=1.011 Sum_probs=87.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
.+..+||+++|++|||||||++++.++++...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34579999999999999999999999998888888888888878888888889999999999999999999999999999
Q ss_pred EE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++ +++.+|+.+. ....++|+++|+
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 132 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVG 132 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 98 5666766533 122478988875
No 45
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.86 E-value=3.1e-21 Score=115.88 Aligned_cols=100 Identities=30% Similarity=0.551 Sum_probs=84.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
.+||+++|++|||||||++++.++.+...+.++.+..+. ..+..++..+.+.+||++|++++..++..+++.+|++++
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 689999999999999999999999988888888876554 556677778999999999999999999999999999998
Q ss_pred ---ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 ---GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+++.||+.+. ....++|+++|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 115 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 115 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEE
Confidence 6677776632 123589998875
No 46
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.86 E-value=6.4e-21 Score=117.29 Aligned_cols=102 Identities=25% Similarity=0.372 Sum_probs=81.5
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
....+||+++|++|||||||++++.++.+...+.++.+..+. ..+..++..+.+.+||++|++++..+ ..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 456899999999999999999999999999899999886663 56677888899999999999988875 6799999999
Q ss_pred EE----ecccchhhhcc-------C----CCCCCEEEee
Q 033918 85 IV----GDLNSFLQQSF-------S----SSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~~-------~----~~~~P~i~v~ 108 (109)
++ ++++||+++.. . ...+|+++|.
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 134 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLG 134 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEE
Confidence 88 77888887431 1 2588998875
No 47
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.86 E-value=2.8e-21 Score=119.90 Aligned_cols=102 Identities=25% Similarity=0.440 Sum_probs=82.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
...+||+++|++|||||||++++.++.+...+.++.+..+ ......++..+.+.+||++|++++..++..+++.+|+++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 4589999999999999999999999999988888888666 456666667788999999999999999999999999999
Q ss_pred E----ecccchhhhc---------cCCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+ +++.+|+.+. ....++|+++|+
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 136 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVG 136 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 9 6777787643 123478999885
No 48
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.86 E-value=1.6e-21 Score=118.33 Aligned_cols=91 Identities=32% Similarity=0.581 Sum_probs=80.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCC-eEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
....+||+++|++|||||||++++.++.+...+.++.+.++....+.+++ ..+.+.+||++|++++...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45679999999999999999999999998888888888778778888876 57899999999999999999999999999
Q ss_pred EEE----ecccchhhh
Q 033918 84 IIV----GDLNSFLQQ 95 (109)
Q Consensus 84 iv~----~~~~s~~~~ 95 (109)
+++ +++.+|+.+
T Consensus 83 ~i~v~d~~~~~s~~~~ 98 (178)
T 2hxs_A 83 VLLVYDITNYQSFENL 98 (178)
T ss_dssp EEEEEETTCHHHHHTH
T ss_pred EEEEEECCCHHHHHHH
Confidence 999 667777664
No 49
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=3.5e-21 Score=118.66 Aligned_cols=103 Identities=29% Similarity=0.515 Sum_probs=86.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
....+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 34689999999999999999999999998888888887655 35667777789999999999999999999999999999
Q ss_pred EE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++ ++++||+.+. ....++|+++|.
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 129 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIG 129 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 98 6677777643 123488998875
No 50
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.86 E-value=2.4e-21 Score=121.28 Aligned_cols=105 Identities=41% Similarity=0.829 Sum_probs=87.2
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCe----------EEEEEEEeCCCccccccc
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK----------TIKLQIWDTAGQERFRTI 73 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~~~ 73 (109)
+.+..+||+++|++|||||||++++.++.+...+.++.+.++....+.+++. .+.+.+||++|++++...
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 4567899999999999999999999999988888888887777777776655 788999999999999999
Q ss_pred hhhhhcCCcEEEE----ecccchhhhc-------cCC--CCCCEEEee
Q 033918 74 TSSYYRGAHGIIV----GDLNSFLQQS-------FSS--SSTPFCLFL 108 (109)
Q Consensus 74 ~~~~~~~~~~iv~----~~~~s~~~~~-------~~~--~~~P~i~v~ 108 (109)
+..+++.+|++++ +++.+|+.+. ... ..+|+++|+
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~ 148 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIG 148 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEE
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEE
Confidence 9999999999998 6667776643 111 578888875
No 51
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.86 E-value=5.2e-21 Score=118.45 Aligned_cols=103 Identities=29% Similarity=0.469 Sum_probs=78.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
....+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..++..+|++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 45689999999999999999999999998888888887555 35667788889999999999999999999999999999
Q ss_pred EE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++ +++.+|+.+. ....++|+++|+
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~ 131 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVG 131 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 98 6677877643 123488998875
No 52
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.86 E-value=1.1e-20 Score=115.36 Aligned_cols=102 Identities=29% Similarity=0.535 Sum_probs=85.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
...+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4579999999999999999999999998888888877554 456677888899999999999999999999999999999
Q ss_pred E----ecccchhhhc--------cCCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+ +++.+|+.+. ....++|+++|+
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 116 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 116 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEE
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 8 6667777643 122488998875
No 53
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.86 E-value=1.2e-21 Score=123.16 Aligned_cols=106 Identities=29% Similarity=0.532 Sum_probs=91.1
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCc
Q 033918 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (109)
Q Consensus 3 ~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 82 (109)
......+||+++|++|||||||+++++.+.+...+.++.+.++.......++..+.+.+||++|++.+..++..+++.+|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 34567899999999999999999998888888888999988888888888888999999999999999999999999999
Q ss_pred EEEE----ecccchhhhc-------cCCCCCCEEEee
Q 033918 83 GIIV----GDLNSFLQQS-------FSSSSTPFCLFL 108 (109)
Q Consensus 83 ~iv~----~~~~s~~~~~-------~~~~~~P~i~v~ 108 (109)
++++ +++.+|+.+. ....++|+++|+
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~ 126 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCG 126 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 9999 6777776643 223488999885
No 54
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.86 E-value=4.2e-21 Score=118.37 Aligned_cols=104 Identities=38% Similarity=0.591 Sum_probs=85.5
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeE----------------------------
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKT---------------------------- 56 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 56 (109)
.+..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 4567999999999999999999999999988889998888877777776654
Q ss_pred ---------EEEEEEeCCCccccccchhhhhcCCcEEEE----ecccchhhhc------cCCCCCCEEEee
Q 033918 57 ---------IKLQIWDTAGQERFRTITSSYYRGAHGIIV----GDLNSFLQQS------FSSSSTPFCLFL 108 (109)
Q Consensus 57 ---------~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~----~~~~s~~~~~------~~~~~~P~i~v~ 108 (109)
..+.+||++|++++...+..+++.+|++++ +++.+|+.+. ......|+++|+
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~ 154 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVA 154 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 889999999999999999999999999999 6666776633 111348888875
No 55
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.86 E-value=1.2e-20 Score=115.32 Aligned_cols=102 Identities=31% Similarity=0.519 Sum_probs=82.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
+..+||+++|++|||||||++++.++.+...+.++.+. .....+..++..+.+.+||++|++++..++..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCE-EEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchh-eEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 35799999999999999999999999988888887764 34466778888899999999999999999999999999999
Q ss_pred E----ecccchhhhc---------cCCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+ +++.+|+.+. ....++|+++|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~ 116 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 8 6677776633 234589999885
No 56
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.86 E-value=1e-20 Score=113.30 Aligned_cols=100 Identities=31% Similarity=0.522 Sum_probs=83.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++....+.+||++|++++..++..+++.+|++++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 68999999999999999999999998888888876444 5677788888899999999999999999999999999988
Q ss_pred ---ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 ---GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+++.+|+.+. ....++|+++|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 115 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVG 115 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 6666766532 223589998875
No 57
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.85 E-value=3.2e-21 Score=119.50 Aligned_cols=105 Identities=23% Similarity=0.260 Sum_probs=81.0
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcccccc-chhhhhcCCc
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-ITSSYYRGAH 82 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~ 82 (109)
.....+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 445689999999999999999999976544434455555566667778888899999999999988765 7888899999
Q ss_pred EEEE----ecccchhhhc---------cCCCCCCEEEee
Q 033918 83 GIIV----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 83 ~iv~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
++++ +++.||+.+. .....+|+++|.
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 137 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 137 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence 9998 7788887643 112478998874
No 58
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.85 E-value=1.3e-20 Score=112.94 Aligned_cols=101 Identities=34% Similarity=0.661 Sum_probs=81.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
..+||+++|++|+|||||++++.++.+...+.++.+..+. ..+..++..+.+.+||++|++++...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 3689999999999999999999999988888888775553 556778888899999999999999999999999999998
Q ss_pred ----ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 ----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+++++|+.+. ....++|+++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 116 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVG 116 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 6677776632 122478998875
No 59
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=116.33 Aligned_cols=103 Identities=33% Similarity=0.629 Sum_probs=85.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
....+||+++|++|||||||++++.++.+...+.++.+..+. ..+..++..+.+.+||++|++++..++..++..+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE-EEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 345799999999999999999999999988888888875553 5667788888999999999999999999999999999
Q ss_pred EE----ecccchhhhc---------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
++ +++.+|+.+. ....++|+++|+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 126 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 126 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 98 6677776632 123489999885
No 60
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.85 E-value=5.2e-21 Score=119.93 Aligned_cols=102 Identities=31% Similarity=0.557 Sum_probs=65.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
...+||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..++..+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4579999999999999999999999998888888876544 456677888899999999999999999999999999999
Q ss_pred E----ecccchhhhc--------cCCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+ +++.+|+.+. ....++|+++|+
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 145 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVG 145 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 8 6777887653 123578998875
No 61
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.85 E-value=1.6e-20 Score=114.48 Aligned_cols=102 Identities=33% Similarity=0.641 Sum_probs=84.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
...+||+++|++|+|||||++++.++.+...+.++.+..+. ..+..++..+.+.+||++|++++..++..+++.+|+++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE-EEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 45799999999999999999999999988888888775553 55677888889999999999999999999999999999
Q ss_pred E----ecccchhhhc---------cCCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+ +++.+|+.+. ....++|+++|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 130 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVG 130 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 8 6667776632 123478998875
No 62
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.85 E-value=1.6e-20 Score=116.53 Aligned_cols=102 Identities=30% Similarity=0.575 Sum_probs=85.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
+..+||+++|++|||||||++++.++.+...+.++.+.++. ..+..++..+.+.+||++|++++..++..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 35799999999999999999999999998888888876665 44677888899999999999999999999999999999
Q ss_pred E----ecccchhhhc--------cCCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+ +++++|+.+. ....++|+++|+
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 136 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG 136 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 8 6667776652 223488998875
No 63
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.84 E-value=1.7e-20 Score=116.81 Aligned_cols=103 Identities=28% Similarity=0.499 Sum_probs=83.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
....+||+++|++|||||||++++..+.+...+.++.+.. ....+..++..+.+.+||++|++++...+..+++.+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEE-EEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecce-eEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 3457999999999999999999999999988888887644 346667788889999999999999999999999999999
Q ss_pred EE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++ +++.+|+.+. ....++|+++|+
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 141 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 141 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 99 7777887643 222588999885
No 64
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.84 E-value=1.5e-20 Score=113.19 Aligned_cols=101 Identities=23% Similarity=0.267 Sum_probs=69.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcccccc-chhhhhcCCcEEEE
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-ITSSYYRGAHGIIV 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~iv~ 86 (109)
.+||+++|++|||||||++++.+..+...+.++.+.+.....+..++..+.+.+||++|++++.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998776666666666667777888888899999999999998876 78888999999998
Q ss_pred ----ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 ----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
++++||+.+. ....++|+++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~ 116 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 116 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEe
Confidence 7777887743 122489999875
No 65
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.84 E-value=1.9e-20 Score=115.01 Aligned_cols=98 Identities=22% Similarity=0.319 Sum_probs=80.2
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
.....+||+++|++|||||||++++.++.+...+.++.+ .+ ...+.+++..+.+.+||++|++++. +++.+|+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 345689999999999999999999999999888888744 33 4778888889999999999998776 7788999
Q ss_pred EEE----ecccchhhhc-------cC--CCCCCEEEee
Q 033918 84 IIV----GDLNSFLQQS-------FS--SSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~~~-------~~--~~~~P~i~v~ 108 (109)
+++ +++.||+++. .. ...+|+++|.
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 126 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVG 126 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 988 7788888733 11 2578998874
No 66
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.84 E-value=2e-20 Score=113.68 Aligned_cols=96 Identities=27% Similarity=0.311 Sum_probs=78.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
...+||+++|++|||||||++++.++.+.. +.++.+..+ ...+.+++..+.+.+||++|+++ ..+++.+|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 457999999999999999999999999876 778877544 56777888889999999999876 56888899999
Q ss_pred E----ecccchhhhcc-----------CCCCCCEEEee
Q 033918 86 V----GDLNSFLQQSF-----------SSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~~-----------~~~~~P~i~v~ 108 (109)
+ ++++||+++.. ...++|+++|.
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 115 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 8 77888877542 12578988874
No 67
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.84 E-value=2.6e-21 Score=118.96 Aligned_cols=104 Identities=19% Similarity=0.265 Sum_probs=79.2
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcc-----------cccceeeEEEEEE-EeCCeEEEEEEEeCCCccccc
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESY-----------ISTIGVDFKIRTV-EQDGKTIKLQIWDTAGQERFR 71 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~ 71 (109)
..+..+||+++|++|||||||++. +.+.+...+ .++.+.++....+ ..++..+.+.+||++|++++.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~-l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKW-IYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHH-HHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHH-HHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 446789999999999999999954 455555553 3456555554444 556678899999999999999
Q ss_pred cchhhhhcCCcEEEE----e------cccchhhhcc-------CCCCCCEEEee
Q 033918 72 TITSSYYRGAHGIIV----G------DLNSFLQQSF-------SSSSTPFCLFL 108 (109)
Q Consensus 72 ~~~~~~~~~~~~iv~----~------~~~s~~~~~~-------~~~~~P~i~v~ 108 (109)
.++..+++.+|++++ + +.++|+.+.. ...++|+++|.
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~ 142 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQV 142 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEE
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEE
Confidence 999999999999999 4 4456665432 34689999885
No 68
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=2.7e-20 Score=112.09 Aligned_cols=101 Identities=29% Similarity=0.452 Sum_probs=82.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
..+||+++|++|+|||||++++.++.+...+.++.+..+. .....++..+.+.+||++|++++..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 4689999999999999999999999888888888775554 455677778899999999999999999999999999998
Q ss_pred ----ecccchhhhc----------cCCCCCCEEEee
Q 033918 87 ----GDLNSFLQQS----------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~~~~~----------~~~~~~P~i~v~ 108 (109)
+++.+|+.+. ....++|+++|+
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~ 116 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVG 116 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 6666776532 112478998875
No 69
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=2.8e-20 Score=114.95 Aligned_cols=102 Identities=27% Similarity=0.392 Sum_probs=84.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
....+||+++|++|||||||++++.++++...+.++.+..+ ...+.+++..+.+.+||++|+++ ...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 34579999999999999999999999999888888887655 35567788889999999999988 77889999999999
Q ss_pred EE----ecccchhhhc---------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
++ +++++|+.+. .....+|+++|+
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 139 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVG 139 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEE
Confidence 98 6677877643 123588999875
No 70
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=2.8e-20 Score=115.93 Aligned_cols=102 Identities=30% Similarity=0.574 Sum_probs=79.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
...+||+++|++|||||||++++.++.+...+.++.+..+. ..+..++..+.+.+||++|++++...+..++..+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 34789999999999999999999999988888888876664 34677888899999999999999999999999999999
Q ss_pred E----ecccchhhhc--------cCCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+ +++.+|+.+. ....++|+++|+
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 136 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVA 136 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 8 6667776652 223488998875
No 71
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=2.1e-20 Score=115.32 Aligned_cols=104 Identities=28% Similarity=0.455 Sum_probs=84.8
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
+....+||+++|++|||||||++++.++.+...+.++.+..+. ..+..++..+.+.+||++|++++..++..++..+|+
T Consensus 4 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 82 (199)
T 2gf0_A 4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA 82 (199)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSE
T ss_pred cCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCE
Confidence 4456799999999999999999999999988888888775554 455677788899999999999999999999999999
Q ss_pred EEE----ecccchhhhc----------cCCCCCCEEEee
Q 033918 84 IIV----GDLNSFLQQS----------FSSSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~~~----------~~~~~~P~i~v~ 108 (109)
+++ +++.+|+.+. ....++|+++|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~ 121 (199)
T 2gf0_A 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121 (199)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 998 6666776643 112478998875
No 72
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.84 E-value=2.9e-21 Score=117.58 Aligned_cols=103 Identities=31% Similarity=0.579 Sum_probs=69.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
....+||+++|++|+|||||++++.++.+...+.++.+..+. ..+..++..+.+.+||++|++++...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 456799999999999999999999999988888888765443 3344556678889999999999999999999999999
Q ss_pred EE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++ +++.+|+++. ....++|+++|+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 119 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVG 119 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 99 6677777643 122478999875
No 73
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.84 E-value=4.3e-20 Score=113.90 Aligned_cols=102 Identities=18% Similarity=0.369 Sum_probs=78.3
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCC-cccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCC
Q 033918 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA 81 (109)
Q Consensus 3 ~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (109)
+......||+++|++|||||||++++.++.+.. .+.++.+... ..+.. ..+.+.+||++|++++..++..+++.+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEK--GRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEE--TTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEe--CCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 345678999999999999999999999999888 7888888433 33333 457899999999999999999999999
Q ss_pred cEEEE----ecccchhhhc-------cC---------CCCCCEEEee
Q 033918 82 HGIIV----GDLNSFLQQS-------FS---------SSSTPFCLFL 108 (109)
Q Consensus 82 ~~iv~----~~~~s~~~~~-------~~---------~~~~P~i~v~ 108 (109)
|++++ ++++||+.+. .. ..++|+++|+
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 134 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFA 134 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEE
Confidence 99999 7778887743 11 0388999885
No 74
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.83 E-value=3.9e-20 Score=111.86 Aligned_cols=102 Identities=28% Similarity=0.381 Sum_probs=72.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccc--cccchhhhhcCCcE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--FRTITSSYYRGAHG 83 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~~~ 83 (109)
+..+||+++|++|||||||++++.++.+...+ ++.+.++....+.+++..+.+.+||++|++. +..++..+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 35799999999999999999999988875543 3456566667778888889999999999987 56677888898998
Q ss_pred EEE----ecccchhhhc-------c--CCCCCCEEEee
Q 033918 84 IIV----GDLNSFLQQS-------F--SSSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~~~-------~--~~~~~P~i~v~ 108 (109)
+++ +++.||+.+. . ...++|+++|+
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~ 118 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVG 118 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEE
Confidence 888 7777887643 1 23489998875
No 75
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.83 E-value=8e-20 Score=112.15 Aligned_cols=102 Identities=31% Similarity=0.566 Sum_probs=73.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
...+||+++|++|||||||++++.++.+...+.++.+..+. ..+..++..+.+.+||++|++++...+..++..+|+++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEE-EEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 35799999999999999999999999988888887765443 56677888899999999999999999999999999999
Q ss_pred E----ecccchhhhc---------cCCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+ +++.+|+.+. ....++|+++|+
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~ 133 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG 133 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 8 6667776533 112478998875
No 76
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.83 E-value=2.9e-21 Score=119.76 Aligned_cols=103 Identities=24% Similarity=0.422 Sum_probs=58.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC--CCCCcccccceeeEEEEEEEeCCe--EEEEEEEeCCCccccccchhhhhcCC
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYIESYISTIGVDFKIRTVEQDGK--TIKLQIWDTAGQERFRTITSSYYRGA 81 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (109)
...+||+++|++|||||||++++.++ .+...+.++.+.++....+.+++. .+.+.+||++|++++...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45789999999999999999999998 778888888887777777888776 88999999999999999999999999
Q ss_pred cEEEE----ecccchhhhc--------cCC---CCCCEEEee
Q 033918 82 HGIIV----GDLNSFLQQS--------FSS---SSTPFCLFL 108 (109)
Q Consensus 82 ~~iv~----~~~~s~~~~~--------~~~---~~~P~i~v~ 108 (109)
|++++ +++.+|+.+. ... .++|+++|+
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 139 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVA 139 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEE
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEE
Confidence 99999 6677777643 111 588988875
No 77
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.83 E-value=1.3e-19 Score=112.33 Aligned_cols=103 Identities=52% Similarity=0.823 Sum_probs=84.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
+..+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|+++++..+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45799999999999999999999999988888888887887788889998899999999999999999999999999888
Q ss_pred E----ecccchhhhc--------cCCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+ ++..+|+++. ....+.|+++++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~ 117 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 117 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 7 5566666532 123577888775
No 78
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.83 E-value=3.1e-20 Score=114.13 Aligned_cols=99 Identities=23% Similarity=0.454 Sum_probs=81.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
...+||+++|++|||||||++++.++++...+.++.+.++. .+.. ..+.+.+||++|++++..++..+++.+|+++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEe--CCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 35799999999999999999999999988888888886654 3333 3477899999999999999999999999999
Q ss_pred E----ecccchhhhc-------c--CCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS-------F--SSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~-------~--~~~~~P~i~v~ 108 (109)
+ +++++|+.+. . ...++|+++|+
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 131 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLG 131 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEE
Confidence 9 6677887633 1 12689999885
No 79
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.83 E-value=1.2e-19 Score=108.51 Aligned_cols=100 Identities=31% Similarity=0.542 Sum_probs=82.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..++..+|++++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 58999999999999999999999988888888776544 4566777888999999999999999999999999999988
Q ss_pred ---ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 ---GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+++.+|+.+. ....++|+++|+
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~ 115 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 6667766532 122478998875
No 80
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.83 E-value=5e-20 Score=110.63 Aligned_cols=99 Identities=25% Similarity=0.345 Sum_probs=59.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE-
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV- 86 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~- 86 (109)
.+||+++|++|||||||++++.+..+. ...++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 589999999999999999999876643 3445555444 4666788889999999999999999999999999999998
Q ss_pred ---ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 ---GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ---~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
++++||+.+. ....++|+++|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~ 113 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVG 113 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 7778887643 123589999875
No 81
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.83 E-value=1.9e-19 Score=111.08 Aligned_cols=105 Identities=52% Similarity=0.832 Sum_probs=87.7
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
+.+..++|+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.+++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 44567999999999999999999999999888889999988888888899988999999999999999999999999887
Q ss_pred EEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 84 IIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+++ ++..+|+++. ....+.|+++++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~ 141 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 141 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 776 5566665532 123577888775
No 82
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.82 E-value=1.9e-19 Score=110.97 Aligned_cols=97 Identities=23% Similarity=0.345 Sum_probs=78.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
..+||+++|++|||||||++++.++++. .+.++.+.. ...+.+++ ..+.+||++|+++++.++..+++.+|++++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 4689999999999999999999998864 567777643 45666665 788999999999999999999999999999
Q ss_pred ----ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 ----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
++++||++.. ....++|+++|.
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 131 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILG 131 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEE
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEE
Confidence 7778887743 123578998875
No 83
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.82 E-value=3.2e-20 Score=116.28 Aligned_cols=105 Identities=31% Similarity=0.545 Sum_probs=83.6
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeC-CeEEEEEEEeCCCccccccchhhhhcCCc
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 82 (109)
..+..+||+++|++|||||||++++.++.+...+.++.+..+........ +..+.+.+||++|++++..++..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 34568999999999999999999999999888888888876665554443 33488999999999999999999999999
Q ss_pred EEEE----ecccchhhhc--------cCCCCCCEEEee
Q 033918 83 GIIV----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 83 ~iv~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
++++ +++.+|+.+. ....++|+++|+
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 124 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCA 124 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEE
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 9998 6777777642 122468998875
No 84
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=8.8e-20 Score=111.87 Aligned_cols=98 Identities=21% Similarity=0.414 Sum_probs=75.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
...+||+++|++|||||||++++.++++. .+.++.+... ..+.+++ ..+.+||++|++++...+..+++.+|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999988876 6777777433 4455544 77899999999999999999999999999
Q ss_pred E----ecccchhhhc-------cC--CCCCCEEEee
Q 033918 86 V----GDLNSFLQQS-------FS--SSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~-------~~--~~~~P~i~v~ 108 (109)
+ ++++||+... .. ..++|+++|+
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 124 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFA 124 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEE
Confidence 9 6777887643 11 2678988875
No 85
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.82 E-value=6.5e-20 Score=112.03 Aligned_cols=100 Identities=21% Similarity=0.378 Sum_probs=78.6
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
.....+||+++|++|||||||++++.++++ ..+.++.+... ..+.+++ ..+.+||++|++++...+..+++.+|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 344689999999999999999999999987 66677777444 3445544 778999999999999999999999999
Q ss_pred EEE----ecccchhhhc-------cC--CCCCCEEEee
Q 033918 84 IIV----GDLNSFLQQS-------FS--SSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~~~-------~~--~~~~P~i~v~ 108 (109)
+++ +++++|+.+. .. ..++|+++|+
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 129 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFA 129 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEE
Confidence 999 6677887632 11 3688988875
No 86
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.82 E-value=6.9e-20 Score=113.66 Aligned_cols=97 Identities=21% Similarity=0.342 Sum_probs=71.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
..+||+++|++|||||||++++.++++. .+.++.+... ..+..++ ..+.+||++|+++++.++..+++.+|++++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 4689999999999999999999988864 5677776543 4556665 788999999999999999999999999999
Q ss_pred ----ecccchhhhc-------c--CCCCCCEEEee
Q 033918 87 ----GDLNSFLQQS-------F--SSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~~~~~-------~--~~~~~P~i~v~ 108 (109)
++++||++.. . ...++|+++|.
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 133 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILG 133 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEE
Confidence 7778887643 1 23589998875
No 87
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.82 E-value=2e-19 Score=110.00 Aligned_cols=98 Identities=26% Similarity=0.566 Sum_probs=79.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
...+||+++|++|||||||++++.+++ ...+.|+.+.. ...+..+ ...+.+||++|++++...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999888 77788887743 3455554 367899999999999999999999999999
Q ss_pred E----ecccchhhhc-------c--CCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS-------F--SSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~-------~--~~~~~P~i~v~ 108 (109)
+ +++.||+.+. . ...++|+++|+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 126 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFA 126 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEE
Confidence 9 6777887632 1 12578988875
No 88
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.82 E-value=2.8e-19 Score=107.74 Aligned_cols=98 Identities=24% Similarity=0.477 Sum_probs=78.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
...+||+++|++|+|||||++++.++.+. .+.|+.+.. ...+..+ ...+.+||++|++++...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 45799999999999999999999998864 466777643 3455554 467899999999999999999999999999
Q ss_pred E----ecccchhhhc------cC---CCCCCEEEee
Q 033918 86 V----GDLNSFLQQS------FS---SSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~------~~---~~~~P~i~v~ 108 (109)
+ +++++|+... .. ..++|+++|+
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 115 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFA 115 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEE
Confidence 9 6677787633 11 2588998875
No 89
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.82 E-value=1.1e-19 Score=111.22 Aligned_cols=99 Identities=28% Similarity=0.496 Sum_probs=78.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
+...+||+++|++|||||||++++.++.+ ..+.|+.+. ....+..+ .+.+.+||++|++++...+..+++.+|++
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 87 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGF--NIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDIL 87 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTE--EEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCe--EEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 35689999999999999999999998764 456777773 33455555 36789999999999999999999999999
Q ss_pred EE----ecccchhhhc-------c--CCCCCCEEEee
Q 033918 85 IV----GDLNSFLQQS-------F--SSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~~~s~~~~~-------~--~~~~~P~i~v~ 108 (109)
++ +++++|+... . ...++|+++|.
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 124 (181)
T 1fzq_A 88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA 124 (181)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 99 6777887632 1 12578998875
No 90
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=111.32 Aligned_cols=100 Identities=21% Similarity=0.443 Sum_probs=78.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCC-CCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS-YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (109)
....+||+++|++|||||||++++.++. +...+.++.+ +....+.+++ ..+.+||++|++++...+..+++.+|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 3468999999999999999999999887 5677788877 4445556554 678999999999999999999999999
Q ss_pred EEE----ecccchhhhc--------cCC---CCCCEEEee
Q 033918 84 IIV----GDLNSFLQQS--------FSS---SSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~~s~~~~~--------~~~---~~~P~i~v~ 108 (109)
+++ +++.||+.+. ... .++|+++|+
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~ 133 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFA 133 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEE
Confidence 999 6666776632 111 578999885
No 91
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.81 E-value=7.5e-20 Score=109.67 Aligned_cols=95 Identities=25% Similarity=0.540 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE--
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV-- 86 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~-- 86 (109)
+||+++|++|||||||++++.++.+.. +.|+.+. ....+.. ....+.+||++|++++..++..+++.+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999888764 5677763 3334444 34678999999999999999999999999999
Q ss_pred --ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 --GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 --~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
++++||+... ....++|+++|+
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 108 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFA 108 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEE
Confidence 6777887643 122478988875
No 92
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.5e-19 Score=113.53 Aligned_cols=103 Identities=23% Similarity=0.290 Sum_probs=77.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCC--CCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccc-cccchhhhhcCC
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS--YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTITSSYYRGA 81 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~ 81 (109)
....+||+++|++|||||||+++|.+.. +...+. +.+.++....+.+++..+.+.+||+.|++. +..+...+++.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~-~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCC-ccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 3457999999999999999999998643 334333 456566667788888889999999999876 455677788888
Q ss_pred cEEEE----ecccchhhhc-------c--CCCCCCEEEee
Q 033918 82 HGIIV----GDLNSFLQQS-------F--SSSSTPFCLFL 108 (109)
Q Consensus 82 ~~iv~----~~~~s~~~~~-------~--~~~~~P~i~v~ 108 (109)
+++++ ++++||+.+. . ....+|+++|.
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVg 152 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 152 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 88887 7888988743 1 12479999874
No 93
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.81 E-value=2.6e-19 Score=110.52 Aligned_cols=98 Identities=24% Similarity=0.533 Sum_probs=73.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
...+||+++|++|||||||++++..+++. .+.|+.+ +....+... ...+.+||++|++++...+..+++.+|+++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 45799999999999999999999988865 4567766 333445553 377899999999999999999999999999
Q ss_pred E----ecccchhhhc---------cCCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+ +++++|+.+. ....++|+++|+
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~ 137 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFA 137 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEE
Confidence 9 6777887643 112478998875
No 94
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.80 E-value=5.1e-20 Score=112.91 Aligned_cols=101 Identities=24% Similarity=0.397 Sum_probs=69.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC--CCCCcccccceeeEEEEEEEe---CCeEEEEEEEeCCCccccccchhhhhcCCc
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADD--SYIESYISTIGVDFKIRTVEQ---DGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 82 (109)
.+||+++|++|||||||++++.+. .+...+.++.+.++....+.. ++..+.+.+||++|++++..+++.+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999984 456677888887776555443 234678999999999999999999999999
Q ss_pred EEEE----ecc-cchhhhc-------cCCCCCCEEEee
Q 033918 83 GIIV----GDL-NSFLQQS-------FSSSSTPFCLFL 108 (109)
Q Consensus 83 ~iv~----~~~-~s~~~~~-------~~~~~~P~i~v~ 108 (109)
++++ +++ .+|+.+. ....++|+++|.
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~ 119 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVG 119 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEE
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 8876 565 4676643 123578888873
No 95
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.80 E-value=6.9e-19 Score=108.72 Aligned_cols=102 Identities=24% Similarity=0.291 Sum_probs=75.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCC--CCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccc-cccchhhhhcCCc
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDS--YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTITSSYYRGAH 82 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~ 82 (109)
...+||+++|++|||||||+++|.+.. +...+. +.+.++....+.+++..+.+.+||+.|.+. ...++..+++.++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----G-GGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc-ccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 346999999999999999999998643 334333 355566667788888889999999999876 5567788888888
Q ss_pred EEEE----ecccchhhhc---------cCCCCCCEEEee
Q 033918 83 GIIV----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 83 ~iv~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
++++ ++++||+.+. .....+|+++|.
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~ 121 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 121 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEE
Confidence 8877 8888998743 123478998874
No 96
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.79 E-value=1.7e-18 Score=114.14 Aligned_cols=101 Identities=30% Similarity=0.556 Sum_probs=85.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
..+||+++|++|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++.+|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 468999999999999999999999999888888887555 4566778888999999999999999999999999999998
Q ss_pred ----ecccchhhhc--------cCCCCCCEEEee
Q 033918 87 ----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+++.||+.+. ....++|+++|+
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~ 266 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVG 266 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 6777887643 223488999875
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.79 E-value=3.7e-19 Score=109.18 Aligned_cols=98 Identities=21% Similarity=0.440 Sum_probs=77.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
...+||+++|++|||||||++++..+++. .+.|+.+. ....+..+ ...+.+||++|++++...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~--~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGV--NLETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTC--CEEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCce--EEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 46799999999999999999999888765 45677763 33445554 367899999999999999999999999999
Q ss_pred E----ecccchhhhc---------cCCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+ +++++|+... ....++|+++|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 130 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFA 130 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEE
Confidence 9 6777787633 112578988875
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.79 E-value=2.9e-19 Score=108.86 Aligned_cols=98 Identities=24% Similarity=0.469 Sum_probs=74.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
...+||+++|++|||||||++++.++++ ..+.++.+.. ...+.+++ ..+.+||++|++++...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5689999999999999999999998876 5667777743 34455544 77899999999999999999999999999
Q ss_pred E----ecccchhhhc-------cC--CCCCCEEEee
Q 033918 86 V----GDLNSFLQQS-------FS--SSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~-------~~--~~~~P~i~v~ 108 (109)
+ +++++|+... .. ..++|+++|+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 126 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFA 126 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEE
Confidence 8 5777887632 11 3678988875
No 99
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.78 E-value=4.2e-19 Score=107.65 Aligned_cols=102 Identities=19% Similarity=0.231 Sum_probs=79.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 84 (109)
.+..++|+++|++|||||||++++.++.+...+.++.+.++....+..++. .+.+||++|++++..++..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 456899999999999999999999999887776666555555555666654 567999999999999999999999999
Q ss_pred EE----ec---ccchhhhcc-CCCCCCEEEee
Q 033918 85 IV----GD---LNSFLQQSF-SSSSTPFCLFL 108 (109)
Q Consensus 85 v~----~~---~~s~~~~~~-~~~~~P~i~v~ 108 (109)
++ ++ +++++.+.. ...++|+++|+
T Consensus 83 i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~ 114 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVEAINHAKAANVPIIVAI 114 (178)
T ss_dssp EEEEETTCCCCHHHHHHHHHHGGGSCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCCEEEEE
Confidence 98 33 445554432 23578988875
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.65 E-value=1.6e-20 Score=116.69 Aligned_cols=102 Identities=29% Similarity=0.547 Sum_probs=83.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
...+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++...+..+++.+|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4579999999999999999999999988888888776444 345566667788999999999999999999999999999
Q ss_pred E----ecccchhhhc--------cCCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS--------FSSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~--------~~~~~~P~i~v~ 108 (109)
+ +++.+|+.+. ....++|+++|+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~ 141 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 141 (204)
Confidence 8 6777887753 111278888774
No 101
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.76 E-value=4.2e-18 Score=112.19 Aligned_cols=99 Identities=23% Similarity=0.319 Sum_probs=76.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC---CcccccceeeEEEEEEEeCCeEEEEEEEeCCCcccc-----ccchhhhh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI---ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-----RTITSSYY 78 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~ 78 (109)
..+||+++|++|||||||++++.++... ..+.+|.+..+. .+.+++ .+.+.+||++|++++ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999887322 245566665554 334444 578999999999988 78899999
Q ss_pred cCCcEEEE----ecccchhhhc----------cCCCCCCEEEee
Q 033918 79 RGAHGIIV----GDLNSFLQQS----------FSSSSTPFCLFL 108 (109)
Q Consensus 79 ~~~~~iv~----~~~~s~~~~~----------~~~~~~P~i~v~ 108 (109)
+.+|++++ ++++||+++. ....++|+++|+
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~ 122 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 99999999 7778887653 124589999885
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.75 E-value=5.6e-18 Score=105.73 Aligned_cols=79 Identities=18% Similarity=0.284 Sum_probs=63.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCe-EEEEEEEeCCCcccccc-chhhhhcCCc
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK-TIKLQIWDTAGQERFRT-ITSSYYRGAH 82 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~~ 82 (109)
....+||+++|++|||||||++++.++.+...+.++. .++. .+.+++. .+.+.+||++|++++.. ++..+++.+|
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 3457999999999999999999999999888776544 3333 2555543 57899999999999987 8899999999
Q ss_pred EEEE
Q 033918 83 GIIV 86 (109)
Q Consensus 83 ~iv~ 86 (109)
++++
T Consensus 81 ~~i~ 84 (214)
T 2fh5_B 81 AVVF 84 (214)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9999
No 103
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.75 E-value=2.2e-18 Score=106.57 Aligned_cols=102 Identities=21% Similarity=0.261 Sum_probs=68.9
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEE--EEEEe-CCeEEEEEEEeCCCccccccch---hhh
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKI--RTVEQ-DGKTIKLQIWDTAGQERFRTIT---SSY 77 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~i~D~~g~~~~~~~~---~~~ 77 (109)
..++.+||+++|++|||||||++++.+. +... ++.+.++.. ....+ ++..+.+.+||++|++++.... ..+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 4557899999999999999999987654 3333 333333322 22223 2456789999999999987665 899
Q ss_pred hcCCcEEEE----ecc--cchhhhc-------cCCCCCCEEEee
Q 033918 78 YRGAHGIIV----GDL--NSFLQQS-------FSSSSTPFCLFL 108 (109)
Q Consensus 78 ~~~~~~iv~----~~~--~s~~~~~-------~~~~~~P~i~v~ 108 (109)
++.+|++++ +++ ++++.+. ....++|+++|.
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~ 136 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFI 136 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 999999999 544 3444321 134688999875
No 104
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.74 E-value=2e-18 Score=114.70 Aligned_cols=97 Identities=24% Similarity=0.511 Sum_probs=72.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
..+||+++|++|||||||++++.++.+... .||.+..+. .+... .+.+.|||++|++.+..++..+++.+|++++
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEET--TEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 467999999999999999999998887544 466664443 33443 4678999999999999999999999999999
Q ss_pred ----ecccchhhhc---------cCCCCCCEEEee
Q 033918 87 ----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+++.+|+.+. ....++|+++|+
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~ 273 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA 273 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEE
Confidence 7788887743 112488999885
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.73 E-value=1.8e-17 Score=115.03 Aligned_cols=98 Identities=23% Similarity=0.530 Sum_probs=78.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
...+||+++|.+|||||||++++.++++. .+.+|.+..+. .+... .+.+.+||++|++.+..++..+++.+|+++
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEE--EEESS--SCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEE--EEEeC--CEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 35799999999999999999999998854 45677775443 34443 467899999999999999999999999999
Q ss_pred E----ecccchhhhc---------cCCCCCCEEEee
Q 033918 86 V----GDLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
+ +++++|+.+. .....+|+++|+
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~ 430 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 430 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEE
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEE
Confidence 9 7788887743 112578999885
No 106
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.73 E-value=5e-17 Score=99.36 Aligned_cols=101 Identities=19% Similarity=0.249 Sum_probs=73.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccc------cchhhhhc
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------TITSSYYR 79 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~ 79 (109)
...+||+++|++|||||||++++.+..+...+.++.+.+.....+..++ ..+.+||++|++.+. .++..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 3578999999999999999999998766555555555555555666654 678899999998774 34666664
Q ss_pred --CCcEEEE-ecccchhhhc-----cCCCCCCEEEee
Q 033918 80 --GAHGIIV-GDLNSFLQQS-----FSSSSTPFCLFL 108 (109)
Q Consensus 80 --~~~~iv~-~~~~s~~~~~-----~~~~~~P~i~v~ 108 (109)
.++++++ .|..+++... ....+.|+++|.
T Consensus 83 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~ 119 (188)
T 2wjg_A 83 NEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLAL 119 (188)
T ss_dssp HHCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEE
Confidence 4898888 6666666532 123578988875
No 107
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.72 E-value=5.7e-18 Score=112.21 Aligned_cols=94 Identities=16% Similarity=0.172 Sum_probs=68.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC---cccccceeeEEEEEEEeCCeEEEEEEEeCCCcccccc---chhhhhcCCcE
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIE---SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT---ITSSYYRGAHG 83 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~ 83 (109)
||+++|++|||||||++++.++.++. .+.+|.+.++.. + + ..+++++||++|+++|.. .+..|++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 79999999999999999887654332 256777766642 2 2 347899999999999974 46899999999
Q ss_pred EEE----ecc--cchhhh-------ccCCCCCCEEEee
Q 033918 84 IIV----GDL--NSFLQQ-------SFSSSSTPFCLFL 108 (109)
Q Consensus 84 iv~----~~~--~s~~~~-------~~~~~~~P~i~v~ 108 (109)
+++ +++ +++++. ....+++|++++.
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvg 113 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLI 113 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEEC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEE
Confidence 999 555 222221 1224689998874
No 108
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.72 E-value=5.9e-17 Score=97.64 Aligned_cols=99 Identities=19% Similarity=0.271 Sum_probs=66.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccc------cchhhhhc--
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------TITSSYYR-- 79 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-- 79 (109)
.++|+++|++|||||||++++.+..+...+.++.+.+.....+..++ ..+.+||++|++++. .+...++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 58999999999999999999998776554445444444445555554 578899999998765 33466664
Q ss_pred CCcEEEE-ecccchhhhc-----cCCCCCCEEEee
Q 033918 80 GAHGIIV-GDLNSFLQQS-----FSSSSTPFCLFL 108 (109)
Q Consensus 80 ~~~~iv~-~~~~s~~~~~-----~~~~~~P~i~v~ 108 (109)
+++++++ .|..+++... ....++|+++|.
T Consensus 81 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~ 115 (165)
T 2wji_A 81 KPDLVVNIVDATALERNLYLTLQLMEMGANLLLAL 115 (165)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEE
Confidence 7899888 5544443311 112478998875
No 109
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.70 E-value=2.5e-17 Score=101.28 Aligned_cols=101 Identities=17% Similarity=0.207 Sum_probs=65.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCC----------ccccccch
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG----------QERFRTIT 74 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~ 74 (109)
....++|+++|++|+|||||++++.++++...+.++.+.+........++ .+.+||++| ++.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34579999999999999999999999887666666665444434444444 488999999 77788888
Q ss_pred hhhhcCC---cEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 75 SSYYRGA---HGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 75 ~~~~~~~---~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
..++..+ |++++ +++.++.... ....++|+++|+
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~ 141 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIA 141 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 8888877 88887 4445555432 123578988875
No 110
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.4e-18 Score=111.75 Aligned_cols=105 Identities=24% Similarity=0.373 Sum_probs=71.8
Q ss_pred CCCceeEEEEEcCC---------CCCHHHHHHHHHh---CCCCCcccccc-eeeEEEEE--------------EEeCCeE
Q 033918 4 EYDYLFKLLLIGDS---------GVGKSCLLLRFAD---DSYIESYISTI-GVDFKIRT--------------VEQDGKT 56 (109)
Q Consensus 4 ~~~~~~ki~liG~~---------~vGKtsl~~~~~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~ 56 (109)
.....+||+++|++ |||||||+++|.+ +.+...+.++. +.++.... ..+++..
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 45568999999999 9999999999998 55666666654 33322111 1245567
Q ss_pred EEEEEEe-----------------------CCCccccccchhhhhc---------------------CCcEEEE----ec
Q 033918 57 IKLQIWD-----------------------TAGQERFRTITSSYYR---------------------GAHGIIV----GD 88 (109)
Q Consensus 57 ~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~iv~----~~ 88 (109)
+.+.+|| +.|++++..++..++. +||++++ ++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 6677888888888887 7999998 67
Q ss_pred c--cchhhhcc---------CCCCCCEEEee
Q 033918 89 L--NSFLQQSF---------SSSSTPFCLFL 108 (109)
Q Consensus 89 ~--~s~~~~~~---------~~~~~P~i~v~ 108 (109)
+ .||+.+.. ...++|+++|.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~ 205 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVL 205 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEE
Confidence 6 78887431 12578999885
No 111
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.69 E-value=1.7e-17 Score=116.15 Aligned_cols=104 Identities=19% Similarity=0.274 Sum_probs=72.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEE------EEe--CCeEEEEEEEeCCCccccccchhh
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRT------VEQ--DGKTIKLQIWDTAGQERFRTITSS 76 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~D~~g~~~~~~~~~~ 76 (109)
....+||+++|.+|||||||++++.++++...+.++.+.++.... +.+ ++....+.+||++|++.+..++..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 456899999999999999999999999988888898887766432 111 233578999999999999999999
Q ss_pred hhcCCcEEEE-ecccchhhhc-------cCCCCCCEEEee
Q 033918 77 YYRGAHGIIV-GDLNSFLQQS-------FSSSSTPFCLFL 108 (109)
Q Consensus 77 ~~~~~~~iv~-~~~~s~~~~~-------~~~~~~P~i~v~ 108 (109)
+++.++++++ .|..+++... ....++|+++|+
T Consensus 118 ~l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~ 157 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVM 157 (535)
T ss_dssp HHHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEE
T ss_pred HccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEE
Confidence 9999999998 5555554422 233578999885
No 112
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.67 E-value=3.8e-17 Score=102.21 Aligned_cols=95 Identities=19% Similarity=0.290 Sum_probs=71.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCC---cccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcC-
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIE---SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG- 80 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~- 80 (109)
....++|+++|++|+|||||++++.++.+.. .+.++.+.++ ....+.+||++|++.+...+..++..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 4567999999999999999999999988654 2333333222 33568899999999999989998877
Q ss_pred ---CcEEEE----e-cccchhhhc--------c----CCCCCCEEEee
Q 033918 81 ---AHGIIV----G-DLNSFLQQS--------F----SSSSTPFCLFL 108 (109)
Q Consensus 81 ---~~~iv~----~-~~~s~~~~~--------~----~~~~~P~i~v~ 108 (109)
++++++ + ++++|+... . ...++|+++|+
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 127 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 127 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEE
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEE
Confidence 888888 4 567776632 1 34689999875
No 113
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.67 E-value=1.3e-15 Score=92.48 Aligned_cols=100 Identities=20% Similarity=0.188 Sum_probs=67.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccc--------hhhh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSY 77 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 77 (109)
...||+++|++|||||||++++.+..+. ....+....++....+.+++. .+.+||++|+.++... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 3579999999999999999999987642 122222333455566677664 4789999998653211 1246
Q ss_pred hcCCcEEEE----ecccchhhhc-------cCCCCCCEEEee
Q 033918 78 YRGAHGIIV----GDLNSFLQQS-------FSSSSTPFCLFL 108 (109)
Q Consensus 78 ~~~~~~iv~----~~~~s~~~~~-------~~~~~~P~i~v~ 108 (109)
++.+|++++ +++.+++... ....++|+++|+
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~ 122 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVR 122 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEE
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEE
Confidence 789999988 5666665321 122478998875
No 114
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.3e-17 Score=100.65 Aligned_cols=94 Identities=19% Similarity=0.250 Sum_probs=66.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCC---cccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcC--
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIE---SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG-- 80 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~-- 80 (109)
...++|+++|++|||||||++++.+..+.. .+.++.+ .+.....+.+||++|++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 457899999999999999999999887643 1222221 11134568899999999998888888876
Q ss_pred --CcEEEE----e-cccchhhhcc------------CCCCCCEEEee
Q 033918 81 --AHGIIV----G-DLNSFLQQSF------------SSSSTPFCLFL 108 (109)
Q Consensus 81 --~~~iv~----~-~~~s~~~~~~------------~~~~~P~i~v~ 108 (109)
+|++++ + ++.+|+.... ...++|+++|+
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 163 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 163 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEE
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEE
Confidence 788888 4 5667665321 33589999885
No 115
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.66 E-value=3.1e-17 Score=100.25 Aligned_cols=94 Identities=19% Similarity=0.253 Sum_probs=68.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCC-----------ccccccchhhh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG-----------QERFRTITSSY 77 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~ 77 (109)
+||+++|++|||||||++++.++.+...+.++..... ..+... .+.+||++| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6999999999999999999999988777666554332 233333 488999999 67777777777
Q ss_pred hcC-Cc---EEEE-ecccchhhh-----------------c-cCCCCCCEEEee
Q 033918 78 YRG-AH---GIIV-GDLNSFLQQ-----------------S-FSSSSTPFCLFL 108 (109)
Q Consensus 78 ~~~-~~---~iv~-~~~~s~~~~-----------------~-~~~~~~P~i~v~ 108 (109)
++. ++ +++. .|..+|+++ . ....++|+++|+
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 129 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAV 129 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEE
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEe
Confidence 765 44 4444 888887553 0 123578988875
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.66 E-value=1.4e-15 Score=98.02 Aligned_cols=102 Identities=18% Similarity=0.160 Sum_probs=68.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccc------hhhhh
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI------TSSYY 78 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~ 78 (109)
....++|+++|++|||||||++++.+..+.....|....+.....+...+ ..+.+||++|+..+... ...++
T Consensus 2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~ 79 (258)
T 3a1s_A 2 PLHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYL 79 (258)
T ss_dssp -CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence 34679999999999999999999998776444344444344444444433 67899999998877653 35565
Q ss_pred --cCCcEEEE-ecccchhh---h--ccCCCCCCEEEee
Q 033918 79 --RGAHGIIV-GDLNSFLQ---Q--SFSSSSTPFCLFL 108 (109)
Q Consensus 79 --~~~~~iv~-~~~~s~~~---~--~~~~~~~P~i~v~ 108 (109)
..+|++++ .|..+++. . ......+|+++|+
T Consensus 80 ~~~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~ 117 (258)
T 3a1s_A 80 LKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAM 117 (258)
T ss_dssp HHSCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEE
T ss_pred hhcCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEE
Confidence 57899988 33333332 1 1223579999885
No 117
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.66 E-value=5.3e-16 Score=92.43 Aligned_cols=98 Identities=19% Similarity=0.253 Sum_probs=62.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccc-------cccchhhhhcC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-------FRTITSSYYRG 80 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~ 80 (109)
.||+++|++|+|||||++++.++.+. ....+....+.....+..++. .+.+||++|++. +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999988743 122222333344455556553 678999999876 34556778899
Q ss_pred CcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 81 AHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 81 ~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
+|++++ +++.+..... ....++|+++|+
T Consensus 80 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~ 115 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVA 115 (161)
T ss_dssp CSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEE
Confidence 999998 3322222110 112578888875
No 118
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.66 E-value=8.5e-16 Score=98.97 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=70.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcccccc----------chhhhh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT----------ITSSYY 78 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~ 78 (109)
.+|+++|.+|||||||++++.+.++.....|....+.....+..++. .+.+||++|...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999988754444455554555566666654 788999999876653 566777
Q ss_pred --cCCcEEEE----ecccchhhhc--cCCCCCCEEEee
Q 033918 79 --RGAHGIIV----GDLNSFLQQS--FSSSSTPFCLFL 108 (109)
Q Consensus 79 --~~~~~iv~----~~~~s~~~~~--~~~~~~P~i~v~ 108 (109)
..+|++++ ++.+++..+. ....++|+++|+
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~ 117 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVAL 117 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEE
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEE
Confidence 88999999 3333333321 233579999886
No 119
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.65 E-value=1.7e-15 Score=95.55 Aligned_cols=101 Identities=17% Similarity=0.093 Sum_probs=63.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCc------ccc---ccchhh
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ------ERF---RTITSS 76 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~------~~~---~~~~~~ 76 (109)
+..+||+++|++|||||||++++.++.+.....+....+.........+ ..+.+||++|+ ++. ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 5679999999999999999999998876422222111122222333332 67899999998 331 122344
Q ss_pred hhcCCcEEEE----ecccchhh---------hccCCCCCCEEEee
Q 033918 77 YYRGAHGIIV----GDLNSFLQ---------QSFSSSSTPFCLFL 108 (109)
Q Consensus 77 ~~~~~~~iv~----~~~~s~~~---------~~~~~~~~P~i~v~ 108 (109)
++..+|++++ +++.+|+. +......+|+++|+
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~ 149 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGF 149 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEE
Confidence 5677888887 66666542 11223489999885
No 120
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.62 E-value=3.3e-15 Score=96.72 Aligned_cols=99 Identities=18% Similarity=0.221 Sum_probs=70.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcccccc------chhhhh--c
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT------ITSSYY--R 79 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~ 79 (109)
.++|+++|++|||||||++++.+..+.....++.+.+.....+...+. .+.+||++|+..+.. .+..++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 589999999999999999999988765445555555555556666553 588999999887765 566676 6
Q ss_pred CCcEEEE-ecccchhhhc-----cCCCC-CCEEEee
Q 033918 80 GAHGIIV-GDLNSFLQQS-----FSSSS-TPFCLFL 108 (109)
Q Consensus 80 ~~~~iv~-~~~~s~~~~~-----~~~~~-~P~i~v~ 108 (109)
.+|++++ .|..+++... ..... +|+++|+
T Consensus 81 ~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~ 116 (271)
T 3k53_A 81 NADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVL 116 (271)
T ss_dssp CCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEE
Confidence 7999998 4444433311 11223 8998885
No 121
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.61 E-value=1.9e-15 Score=92.56 Aligned_cols=101 Identities=22% Similarity=0.263 Sum_probs=67.3
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCC----------ccccccc
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG----------QERFRTI 73 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 73 (109)
+.+..+||+++|++|+|||||++++.++. ...+.++.+.+........+. .+.+||++| ++.+..+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence 34567899999999999999999999887 344455554434333333333 377999999 6677788
Q ss_pred hhhhhcCC---cEEEE-ec---ccch--hhhc--cCCCCCCEEEee
Q 033918 74 TSSYYRGA---HGIIV-GD---LNSF--LQQS--FSSSSTPFCLFL 108 (109)
Q Consensus 74 ~~~~~~~~---~~iv~-~~---~~s~--~~~~--~~~~~~P~i~v~ 108 (109)
+..+++.+ +++++ .| ..+. ..+. ....++|+++|+
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~ 140 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVL 140 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 88888877 77776 22 2111 1111 122478998875
No 122
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.60 E-value=1.2e-14 Score=95.60 Aligned_cols=102 Identities=14% Similarity=0.054 Sum_probs=66.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCC-cccccceeeEEEEEEEeCCeEEEEEEEeCCCccc--------cccchh
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITS 75 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~ 75 (109)
..+..+|+++|.+|||||||++++++.++.. ...+....+........ ...++.+|||+|... +.....
T Consensus 4 ~~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~--~~~~l~l~DTpG~~~~~~~l~~~~~~~~~ 81 (301)
T 1wf3_A 4 KTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE--GRRQIVFVDTPGLHKPMDALGEFMDQEVY 81 (301)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE--TTEEEEEEECCCCCCCCSHHHHHHHHHHH
T ss_pred CccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe--CCcEEEEecCccccchhhHHHHHHHHHHH
Confidence 3456789999999999999999999988642 12221111122122222 246789999999875 445566
Q ss_pred hhhcCCcEEEE----ecccchh------hhccCCCCCCEEEee
Q 033918 76 SYYRGAHGIIV----GDLNSFL------QQSFSSSSTPFCLFL 108 (109)
Q Consensus 76 ~~~~~~~~iv~----~~~~s~~------~~~~~~~~~P~i~v~ 108 (109)
.+++.+|++++ +++.+.. .+.....+.|+++|+
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~ 124 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVG 124 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEE
T ss_pred HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEE
Confidence 78899999999 3322222 122222379999885
No 123
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.59 E-value=6e-15 Score=97.19 Aligned_cols=105 Identities=13% Similarity=0.065 Sum_probs=68.9
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcc-cccceeeEEEEEEEeCCeEEEEEEEeCCCccccc----------
Q 033918 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESY-ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR---------- 71 (109)
Q Consensus 3 ~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------- 71 (109)
+.++..-.|+++|.+|||||||++++++.++.... .+....+........+ ...++.+|||+|+....
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 45567889999999999999999999998864321 1111112222233333 14678999999986544
Q ss_pred cchhhhhcCCcEEEE----ecccchhhhc-----cCCCCCCEEEee
Q 033918 72 TITSSYYRGAHGIIV----GDLNSFLQQS-----FSSSSTPFCLFL 108 (109)
Q Consensus 72 ~~~~~~~~~~~~iv~----~~~~s~~~~~-----~~~~~~P~i~v~ 108 (109)
..+..++..+|++++ ++..+++... ....++|+++|+
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~ 129 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVI 129 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEE
Confidence 566788899999998 4444443321 122578999886
No 124
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.59 E-value=2.6e-15 Score=97.51 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=64.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccc------cchhhhhc-
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------TITSSYYR- 79 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 79 (109)
..++|+++|++|||||||++++.+.+......|... +......+.. ...+.+||++|+..+. .++..|+.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~t--v~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVT--VERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCC--CSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCc--EEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 368999999999999999999998764332223222 2223333443 4568999999998775 45667775
Q ss_pred -CCcEEEE-ecccchhh---hc--cCCCCCCEEEee
Q 033918 80 -GAHGIIV-GDLNSFLQ---QS--FSSSSTPFCLFL 108 (109)
Q Consensus 80 -~~~~iv~-~~~~s~~~---~~--~~~~~~P~i~v~ 108 (109)
.+|++++ .|..+++. .. .....+|+++++
T Consensus 79 ~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~ 114 (272)
T 3b1v_A 79 QRADSILNVVDATNLERNLYLTTQLIETGIPVTIAL 114 (272)
T ss_dssp TCCSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEE
T ss_pred CCCCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEE
Confidence 5898888 33333332 11 122578998875
No 125
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.57 E-value=9.9e-15 Score=94.75 Aligned_cols=100 Identities=18% Similarity=0.209 Sum_probs=67.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcccccc----------chhh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT----------ITSS 76 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~ 76 (109)
+.++|+++|.+|+|||||++++.+..+.....+....+.....+...+ ..+.+||++|+..+.. .+..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 368999999999999999999998876444444444445545555544 3577999999876652 2334
Q ss_pred hh--cCCcEEEE-ecccchhhhc-----cCCCCCCEEEee
Q 033918 77 YY--RGAHGIIV-GDLNSFLQQS-----FSSSSTPFCLFL 108 (109)
Q Consensus 77 ~~--~~~~~iv~-~~~~s~~~~~-----~~~~~~P~i~v~ 108 (109)
++ ..+|++++ .|...++... ....++|+++|+
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~ 119 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVAL 119 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEE
Confidence 43 68999999 4433333211 122378999885
No 126
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.57 E-value=1.4e-15 Score=95.28 Aligned_cols=104 Identities=17% Similarity=0.231 Sum_probs=63.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeC-CeEEEEEEEeCCCc----------cccccc
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQ----------ERFRTI 73 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~----------~~~~~~ 73 (109)
....++|+++|.+|+|||||++++.++.+........+........... .....+.+||++|. +.+..+
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 3457899999999999999999999887322222222222222222332 22356889999994 445666
Q ss_pred hhhhhcC---CcEEEE--ecccchhh-----hc-cCCCCCCEEEee
Q 033918 74 TSSYYRG---AHGIIV--GDLNSFLQ-----QS-FSSSSTPFCLFL 108 (109)
Q Consensus 74 ~~~~~~~---~~~iv~--~~~~s~~~-----~~-~~~~~~P~i~v~ 108 (109)
+..++.. +|++++ .....+.. +. .....+|+++|+
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~ 151 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLL 151 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEE
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 6677766 566777 21112211 11 123678998885
No 127
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.56 E-value=8.7e-15 Score=94.88 Aligned_cols=63 Identities=29% Similarity=0.454 Sum_probs=42.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCC-CCcc-------cccceeeEEEEEEEeCCeEEEEEEEeCCCc
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY-IESY-------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (109)
....++|+++|.+|+|||||++++.+.+. ...+ .++.+.+.....+..++..+.+.+||++|.
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~ 75 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGF 75 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCC
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCc
Confidence 45689999999999999999999776543 3444 556665565555555555678999999997
No 128
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.56 E-value=2.8e-15 Score=95.31 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=54.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccc--cceeeEEEEEEEeCCeEEEEEEEeCCCc-----------cccc
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYIS--TIGVDFKIRTVEQDGKTIKLQIWDTAGQ-----------ERFR 71 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~-----------~~~~ 71 (109)
....+||+++|++|+|||||++++.+..+.....+ +...+........++ ..+.+||++|. +.+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence 34579999999999999999999999887555444 233333444455554 46789999993 3444
Q ss_pred cchhhhhcCCcEEEE
Q 033918 72 TITSSYYRGAHGIIV 86 (109)
Q Consensus 72 ~~~~~~~~~~~~iv~ 86 (109)
..+..+++.+|++++
T Consensus 104 ~~~~~~~~~~~~~l~ 118 (239)
T 3lxx_A 104 RCILLTSPGPHALLL 118 (239)
T ss_dssp HHHHHTTTCCSEEEE
T ss_pred HHHHhcCCCCcEEEE
Confidence 555566677899998
No 129
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.55 E-value=8.4e-15 Score=93.80 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=50.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCccccccee--eEEEEEEEeCCeEEEEEEEeCCCc--------cccccchh
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGV--DFKIRTVEQDGKTIKLQIWDTAGQ--------ERFRTITS 75 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~~ 75 (109)
...+||+++|.+|+|||||++++++.+......+..+. .........++ ..+.+|||+|. +++.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 45899999999999999999999988764433322211 22223334444 56889999996 33333333
Q ss_pred hhh----cCCcEEEE
Q 033918 76 SYY----RGAHGIIV 86 (109)
Q Consensus 76 ~~~----~~~~~iv~ 86 (109)
.++ +.+|++++
T Consensus 97 ~~~~~~~~~~d~il~ 111 (247)
T 3lxw_A 97 HCYLLSAPGPHALLL 111 (247)
T ss_dssp HHHHHHTTCCSEEEE
T ss_pred HHHHhcCCCCCEEEE
Confidence 333 88999999
No 130
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.55 E-value=2.4e-15 Score=103.63 Aligned_cols=101 Identities=19% Similarity=0.181 Sum_probs=66.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCC--------ccccccchhhhh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG--------QERFRTITSSYY 78 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~~~ 78 (109)
...+|+++|.+|||||||++++.+.++. ....+.+.+..............+.+||++| ++++...+..++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 4679999999999999999999987653 2223334333333334443445789999999 777888889999
Q ss_pred cCCcEEEE--ecccchhhhc------cCCCCCCEEEee
Q 033918 79 RGAHGIIV--GDLNSFLQQS------FSSSSTPFCLFL 108 (109)
Q Consensus 79 ~~~~~iv~--~~~~s~~~~~------~~~~~~P~i~v~ 108 (109)
..+|++++ ..+..+.... ....+.|+++|+
T Consensus 101 ~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~ 138 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAV 138 (456)
T ss_dssp HHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEE
T ss_pred hhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEE
Confidence 99999999 3333332211 234689999885
No 131
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.54 E-value=9.4e-14 Score=89.14 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=55.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCC-CCCccccc-ceeeEEEEEEEeCCeEEEEEEEeCCCccccccc----------
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDS-YIESYIST-IGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI---------- 73 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---------- 73 (109)
...++|+++|.+|+|||||++++++.. +...+.++ ...+........++ ..+.+|||+|+..+...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 357999999999999999999999877 44444443 23233333444444 46889999998655322
Q ss_pred -hhhhhcCCcEEEE
Q 033918 74 -TSSYYRGAHGIIV 86 (109)
Q Consensus 74 -~~~~~~~~~~iv~ 86 (109)
...+++.+|++++
T Consensus 98 ~~~~~~~~~d~il~ 111 (260)
T 2xtp_A 98 CYLLSAPGPHVLLL 111 (260)
T ss_dssp HHHHHTTCCSEEEE
T ss_pred HHHhcCCCCcEEEE
Confidence 2236788999999
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.53 E-value=1.8e-14 Score=98.83 Aligned_cols=98 Identities=22% Similarity=0.222 Sum_probs=60.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccc---------cccchhhhh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER---------FRTITSSYY 78 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~ 78 (109)
-+|+++|.+|||||||++++.+++.. ....|....+.....+..++. .+.+|||+|.+. +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 37999999999999999999987642 222333333444456666664 468999999653 334567789
Q ss_pred cCCcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 79 RGAHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 79 ~~~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
+.||++++ ++..+..... ....+.|+++|+
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~ 117 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRKSTVDTILVA 117 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEE
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999 2222332211 122478988875
No 133
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.53 E-value=4.5e-15 Score=101.79 Aligned_cols=100 Identities=19% Similarity=0.196 Sum_probs=59.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcc--------ccccchhhhhc
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE--------RFRTITSSYYR 79 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~ 79 (109)
..+|+++|.+|||||||++++.+.++. ...++.+.+..............+.+|||+|++ ++...+..++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 368999999999999999999987653 223333332222222233233468899999985 56677788999
Q ss_pred CCcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 80 GAHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 80 ~~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
.||++++ ++..++.... ....+.|+++|+
T Consensus 82 ~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~ 118 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAV 118 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEE
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 9999998 2333333211 234688999885
No 134
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.52 E-value=9.3e-14 Score=89.53 Aligned_cols=77 Identities=17% Similarity=0.299 Sum_probs=54.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCC--CCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhc-----
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSY--IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR----- 79 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~----- 79 (109)
..++|+++|.+|+|||||++++.+..+ ...+.++ ........+..++ ..+.+||++|++.+......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~-t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAE-GLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC--CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc-ceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 579999999999999999999998874 2233322 2223334444544 47899999999887766555554
Q ss_pred ----CCcEEEE
Q 033918 80 ----GAHGIIV 86 (109)
Q Consensus 80 ----~~~~iv~ 86 (109)
.+|++++
T Consensus 112 l~~~~~~~il~ 122 (262)
T 3def_A 112 LVNRTIDVLLY 122 (262)
T ss_dssp TTTCEECEEEE
T ss_pred HhcCCCCEEEE
Confidence 6788888
No 135
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.51 E-value=4.8e-14 Score=94.72 Aligned_cols=103 Identities=24% Similarity=0.412 Sum_probs=57.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCC-CCCccc--------ccceeeEEEEEEEeCCeEEEEEEEeCCCc-------cc
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDS-YIESYI--------STIGVDFKIRTVEQDGKTIKLQIWDTAGQ-------ER 69 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~ 69 (109)
...++|+++|++|+|||||++++.+.. +...+. ++.+.+.....+...+....+.+||++|+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 347899999999999999999976543 333322 34443333333344455678999999998 67
Q ss_pred cccchh-------hhhcCC-------------cEEEE--ec-ccchhhhc-----cCCCCCCEEEee
Q 033918 70 FRTITS-------SYYRGA-------------HGIIV--GD-LNSFLQQS-----FSSSSTPFCLFL 108 (109)
Q Consensus 70 ~~~~~~-------~~~~~~-------------~~iv~--~~-~~s~~~~~-----~~~~~~P~i~v~ 108 (109)
+..++. .|+..+ +++++ ++ ..+|..+. .....+|+|+|+
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~ 181 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVI 181 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEE
Confidence 777776 666543 34555 43 45665533 234678999885
No 136
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.49 E-value=1.2e-14 Score=99.58 Aligned_cols=101 Identities=17% Similarity=0.222 Sum_probs=64.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCc----------cccccch
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ----------ERFRTIT 74 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~ 74 (109)
+..+||+++|.+|||||||++++++.++. ....+....+.....+..++. .+.+|||+|+ +.+..++
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 35699999999999999999999987753 222222233333345566654 4789999997 4444443
Q ss_pred h-hhhcCCcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 75 S-SYYRGAHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 75 ~-~~~~~~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
. .+++.+|++++ ++..+++... ......|+++|+
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~ 293 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVV 293 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEE
Confidence 3 47888999988 5555655432 112568888875
No 137
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.47 E-value=8.9e-14 Score=96.35 Aligned_cols=100 Identities=17% Similarity=0.095 Sum_probs=53.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccch--------hhh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT--------SSY 77 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~ 77 (109)
..+||+++|.+|+|||||++++.+.+.. ....+....+.....+.+++ ..+.+|||+|+..+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 3689999999999999999999887532 22233333344445566665 568899999987655333 447
Q ss_pred hcCCcEEEE----ecccchhh------hccCCCCCCEEEee
Q 033918 78 YRGAHGIIV----GDLNSFLQ------QSFSSSSTPFCLFL 108 (109)
Q Consensus 78 ~~~~~~iv~----~~~~s~~~------~~~~~~~~P~i~v~ 108 (109)
+..+|++++ +++.+++. ......++|+++|+
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~ 350 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVA 350 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEE
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEE
Confidence 889999999 55666631 11112378988875
No 138
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.46 E-value=1.8e-15 Score=105.94 Aligned_cols=101 Identities=16% Similarity=0.127 Sum_probs=70.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
+..+|+++|.+++|||||+++|.+..+...+.++.+.++....+..++ ...+.|||++|++.|..++..++..+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 467899999999999999999998766554455444333323333321 1358899999999999999999999999998
Q ss_pred ----ecccch---hhhc-cCCCCCCEEEee
Q 033918 87 ----GDLNSF---LQQS-FSSSSTPFCLFL 108 (109)
Q Consensus 87 ----~~~~s~---~~~~-~~~~~~P~i~v~ 108 (109)
++..+. +.+. ....++|+++++
T Consensus 82 VVDa~dg~~~qt~e~l~~~~~~~vPiIVVi 111 (537)
T 3izy_P 82 VVAADDGVMKQTVESIQHAKDAHVPIVLAI 111 (537)
T ss_dssp ECBSSSCCCHHHHHHHHHHHTTTCCEEECC
T ss_pred EEECCCCccHHHHHHHHHHHHcCCcEEEEE
Confidence 332222 2222 223578988775
No 139
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.44 E-value=1.9e-13 Score=88.40 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=50.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC--CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchh-------hh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI--ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITS-------SY 77 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~ 77 (109)
..++|+++|.+|+|||||++++.+..+. ..+.++ ........+.. ....+.+|||+|...+..... .+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~-t~~~~~~~~~~--~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSE-GPRPVMVSRSR--AGFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCC-CSSCEEEEEEE--TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCc-ceeeEEEEEee--CCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 4799999999999999999999987753 222221 11122222233 336789999999876653322 12
Q ss_pred --hcCCcEEEE
Q 033918 78 --YRGAHGIIV 86 (109)
Q Consensus 78 --~~~~~~iv~ 86 (109)
...+|++++
T Consensus 115 ~~~~~~d~il~ 125 (270)
T 1h65_A 115 LLDKTIDVLLY 125 (270)
T ss_dssp TTTCEECEEEE
T ss_pred hhcCCCCEEEE
Confidence 235888888
No 140
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.43 E-value=8.7e-13 Score=90.61 Aligned_cols=79 Identities=16% Similarity=0.091 Sum_probs=56.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCC--C-----------------------------CcccccceeeEEEEEEEeCC
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY--I-----------------------------ESYISTIGVDFKIRTVEQDG 54 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~ 54 (109)
...++|+++|.+++|||||+++|+...- . .+..+....+.....+..+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~- 93 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE- 93 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC-
Confidence 3478999999999999999999954311 0 1111222333333334443
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
...+.|||++|+++|......++..+|++++
T Consensus 94 -~~~~~iiDTPGh~~f~~~~~~~~~~aD~~il 124 (439)
T 3j2k_7 94 -KKHFTILDAPGHKSFVPNMIGGASQADLAVL 124 (439)
T ss_pred -CeEEEEEECCChHHHHHHHHhhHhhCCEEEE
Confidence 3578999999999999988899999999998
No 141
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.42 E-value=1.8e-13 Score=89.97 Aligned_cols=102 Identities=17% Similarity=0.152 Sum_probs=64.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCC-cccccceeeEEEEEEEeCCeEEEEEEEeCCCcc---------ccccch
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE---------RFRTIT 74 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~ 74 (109)
..+..+|+++|++|+|||||++++.+.++.. ...+....+.....+..+ ..++.+|||+|+. .+....
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~ 82 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAA 82 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHH
Confidence 3456689999999999999999999887532 111211111111222332 3578899999987 344555
Q ss_pred hhhhcCCcEEEE-ecccchhhhc------cCCCCCCEEEee
Q 033918 75 SSYYRGAHGIIV-GDLNSFLQQS------FSSSSTPFCLFL 108 (109)
Q Consensus 75 ~~~~~~~~~iv~-~~~~s~~~~~------~~~~~~P~i~v~ 108 (109)
..++..+|++++ .|...+.... ....+.|+++++
T Consensus 83 ~~~l~~~D~vl~Vvd~~~~~~~~~~i~~~l~~~~~P~ilvl 123 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAV 123 (301)
T ss_dssp TSCCCCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEE
T ss_pred HHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 677889999988 3332243211 123578999886
No 142
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.41 E-value=1.5e-13 Score=94.01 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=63.5
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccc-------hh
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-------TS 75 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~ 75 (109)
.....++|+++|..|+|||||++++.+..+. ....+....+.....+...+. ..+.+||++|++.+..+ ..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence 3456899999999999999999999987753 122222222334445555543 36899999999876544 35
Q ss_pred hhhcCCcEEEE-ecccchhh-----hc-cCCCCCCEEEee
Q 033918 76 SYYRGAHGIIV-GDLNSFLQ-----QS-FSSSSTPFCLFL 108 (109)
Q Consensus 76 ~~~~~~~~iv~-~~~~s~~~-----~~-~~~~~~P~i~v~ 108 (109)
.++..+|++++ .|. +... +. ....++|+++|+
T Consensus 109 ~~l~~aD~vllVvD~-~~~~~~~~~l~~l~~~~~piIvV~ 147 (423)
T 3qq5_A 109 RVFYRADCGILVTDS-APTPYEDDVVNLFKEMEIPFVVVV 147 (423)
T ss_dssp HHHTSCSEEEEECSS-SCCHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHhcCCEEEEEEeC-CChHHHHHHHHHHHhcCCCEEEEE
Confidence 58889999999 433 2211 10 122488998885
No 143
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.41 E-value=1.3e-13 Score=95.63 Aligned_cols=99 Identities=19% Similarity=0.232 Sum_probs=67.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCcc-cccc--------chhhh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE-RFRT--------ITSSY 77 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~ 77 (109)
.++|+++|.+|+|||||++++.+.++. ....+....+.....+.+++ ..+.+||++|.. ++.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999999987642 22233333345555666665 457899999987 5432 23567
Q ss_pred hcCCcEEEE----ecccchhhhcc--CCCCCCEEEee
Q 033918 78 YRGAHGIIV----GDLNSFLQQSF--SSSSTPFCLFL 108 (109)
Q Consensus 78 ~~~~~~iv~----~~~~s~~~~~~--~~~~~P~i~v~ 108 (109)
+..+|++++ +++.+++..+. .....|+++|+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~ 357 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVI 357 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEE
T ss_pred hhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEE
Confidence 889999998 45556554321 11478988875
No 144
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.40 E-value=1.6e-13 Score=94.57 Aligned_cols=101 Identities=19% Similarity=0.287 Sum_probs=64.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCC-CCcccccceeeEEEEEEEeCCeEEEEEEEeCCC----------ccccccch
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG----------QERFRTIT 74 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~ 74 (109)
+..+||+++|.+|+|||||++++.+.+. .....+....+.....+..++. .+.+|||+| ++++..++
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4579999999999999999999997652 2222222222333345555554 688999999 66666655
Q ss_pred h-hhhcCCcEEEE--ecccchhhhc------cCCCCCCEEEee
Q 033918 75 S-SYYRGAHGIIV--GDLNSFLQQS------FSSSSTPFCLFL 108 (109)
Q Consensus 75 ~-~~~~~~~~iv~--~~~~s~~~~~------~~~~~~P~i~v~ 108 (109)
. .+++.+|++++ ...+++.... ......|+++|+
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~ 313 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVV 313 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEE
Confidence 4 47888999998 2222332211 122568888875
No 145
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.39 E-value=7.3e-14 Score=97.81 Aligned_cols=101 Identities=13% Similarity=0.146 Sum_probs=65.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCC-----------------CCcccc---cceee--EEEEEEEeCCeEEEEEEEe
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-----------------IESYIS---TIGVD--FKIRTVEQDGKTIKLQIWD 63 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~-----------------~~~~~~---~~~~~--~~~~~~~~~~~~~~~~i~D 63 (109)
++..+|+++|.+|+|||||+++++.... ...+.+ ..+.+ .....+... ...+.+||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--DYLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--TEEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--CEEEEEEE
Confidence 4578999999999999999999962110 000000 01111 122233333 46789999
Q ss_pred CCCccccccchhhhhcCCcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 64 TAGQERFRTITSSYYRGAHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
|+|+..+...+..+++.+|++++ ++..+..... ....++|+++|+
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivvi 141 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFI 141 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999 2222332211 123578998885
No 146
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.39 E-value=3.6e-14 Score=98.72 Aligned_cols=101 Identities=14% Similarity=0.187 Sum_probs=69.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv 85 (109)
++..+|+++|..++|||||++++....+.....+....+.....+..++ ..+.|||++|++.|..++..++..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 3567899999999999999999987655433332222222212223333 35789999999999999999999999998
Q ss_pred E----ec---ccchhhhcc-CCCCCCEEEee
Q 033918 86 V----GD---LNSFLQQSF-SSSSTPFCLFL 108 (109)
Q Consensus 86 ~----~~---~~s~~~~~~-~~~~~P~i~v~ 108 (109)
+ ++ +++++.+.. ...++|+++++
T Consensus 80 LVVda~~g~~~qT~e~l~~~~~~~vPiIVvi 110 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAIQHAKAAQVPVVVAV 110 (501)
T ss_dssp EEEETTTBSCTTTHHHHHHHHHTTCCEEEEE
T ss_pred EEeecccCccHHHHHHHHHHHhcCceEEEEE
Confidence 8 22 455555432 23578988775
No 147
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.39 E-value=4.3e-13 Score=93.08 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=64.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCC-------CCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhc
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDS-------YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR 79 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 79 (109)
..++|+++|..++|||||++++.+.. +..+..+....+.....+.+++ ..+.+||++|++++......++.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence 47899999999999999999998765 2222222111112112333443 57899999999999888888999
Q ss_pred CCcEEEE----ec---ccchhhhcc-CCCCCCEEEee
Q 033918 80 GAHGIIV----GD---LNSFLQQSF-SSSSTPFCLFL 108 (109)
Q Consensus 80 ~~~~iv~----~~---~~s~~~~~~-~~~~~P~i~v~ 108 (109)
.+|++++ ++ +++++.+.. ....+|.++++
T Consensus 96 ~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~Ivvi 132 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVI 132 (482)
T ss_dssp SCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEE
T ss_pred hCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEE
Confidence 9999999 22 344544331 22467776654
No 148
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.37 E-value=1.5e-13 Score=97.30 Aligned_cols=102 Identities=20% Similarity=0.131 Sum_probs=68.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCc----ccccceeeEEEEEE------------EeCCeEEEEEEEeCCCcccc
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIES----YISTIGVDFKIRTV------------EQDGKTIKLQIWDTAGQERF 70 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~~~i~D~~g~~~~ 70 (109)
+..+|+++|.+++|||||++++.+..+... ..++.+..+..... ..+.....+.||||+|++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 467999999999999999999987654321 12233322211100 00001124899999999999
Q ss_pred ccchhhhhcCCcEEEE----ec---ccchhhhcc-CCCCCCEEEee
Q 033918 71 RTITSSYYRGAHGIIV----GD---LNSFLQQSF-SSSSTPFCLFL 108 (109)
Q Consensus 71 ~~~~~~~~~~~~~iv~----~~---~~s~~~~~~-~~~~~P~i~v~ 108 (109)
..++..+++.+|++++ ++ +++++.+.. ...++|+++++
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVVi 129 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAA 129 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEe
Confidence 9999999999999999 33 566666442 23578988875
No 149
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.37 E-value=7e-12 Score=85.21 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=56.7
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEE---------------------e---CCeEEE
Q 033918 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVE---------------------Q---DGKTIK 58 (109)
Q Consensus 3 ~~~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~---~~~~~~ 58 (109)
+.....++|+++|.+++|||||++++.+...... .+ +...... . ......
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK----LG--YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRR 76 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS----SE--EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEE
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcccccc----cC--ccccceeeccccccccceecccccccccccccccccce
Confidence 4456689999999999999999999987543221 11 0000000 0 112367
Q ss_pred EEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 59 LQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 59 ~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
+.+||++|++++......++..+|++++
T Consensus 77 ~~iiDtPGh~~~~~~~~~~~~~~D~~il 104 (403)
T 3sjy_A 77 ISFIDAPGHEVLMATMLSGAALMDGAIL 104 (403)
T ss_dssp EEEEECCCCGGGHHHHHHHHTTCSEEEE
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 8999999999999999999999999999
No 150
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.36 E-value=3.1e-13 Score=93.33 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=57.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccc--------hhhh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSY 77 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 77 (109)
..+||+++|.+|+|||||++++.+.++. ....+....++....+.+++ ..+.+|||+|...+... ...+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 3689999999999999999999986542 22223333334334555665 45789999997554432 2346
Q ss_pred hcCCcEEEE----ecccchhhhc--cCCCCCCEEEee
Q 033918 78 YRGAHGIIV----GDLNSFLQQS--FSSSSTPFCLFL 108 (109)
Q Consensus 78 ~~~~~~iv~----~~~~s~~~~~--~~~~~~P~i~v~ 108 (109)
+..+|++++ +++.+.+... ......|+++|+
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~ 337 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVM 337 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEE
T ss_pred hhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEE
Confidence 788999998 3343433311 111346888875
No 151
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.35 E-value=8.1e-13 Score=92.59 Aligned_cols=103 Identities=14% Similarity=0.113 Sum_probs=63.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCc------------c--------cccceeeEEEEEEEeCCeEEEEEEEeCC
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIES------------Y--------ISTIGVDFKIRTVEQDGKTIKLQIWDTA 65 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~------------~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 65 (109)
....+|+++|.+++|||||+++++...-... . .+..+.+.......+......+.+||++
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 4578999999999999999999986311000 0 0011111111111122234678999999
Q ss_pred CccccccchhhhhcCCcEEEE-ecc-cchhh-----hc-cCCCCCCEEEee
Q 033918 66 GQERFRTITSSYYRGAHGIIV-GDL-NSFLQ-----QS-FSSSSTPFCLFL 108 (109)
Q Consensus 66 g~~~~~~~~~~~~~~~~~iv~-~~~-~s~~~-----~~-~~~~~~P~i~v~ 108 (109)
|+..+......++..+|++++ .|. ...+. .. ....++|+++++
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivvi 141 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFM 141 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEE
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEE
Confidence 999999888889999999999 221 11111 11 233578988875
No 152
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.35 E-value=3.5e-12 Score=85.01 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=42.2
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEE----e----------cccchhhhc---------cCCCCCCEEEee
Q 033918 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIV----G----------DLNSFLQQS---------FSSSSTPFCLFL 108 (109)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~----~----------~~~s~~~~~---------~~~~~~P~i~v~ 108 (109)
..+.+++||++|+++++.+|..|++++++++| + +..+|++.. ....++|++|++
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~ 235 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFL 235 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEE
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEE
Confidence 34788999999999999999999999999999 3 455554421 123678999885
No 153
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.34 E-value=8.1e-13 Score=91.67 Aligned_cols=80 Identities=23% Similarity=0.233 Sum_probs=55.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCC--CCCccc---------------------------ccceeeEEEEEEEeCCeEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDS--YIESYI---------------------------STIGVDFKIRTVEQDGKTI 57 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 57 (109)
..+||+++|.+++|||||+++|+... +...+. ...|.+.......+.....
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 36999999999999999999997551 111000 0001111111112222346
Q ss_pred EEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 58 KLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 58 ~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
.+.|||++|+++|......++..+|++++
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~ll 140 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAIL 140 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEE
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEE
Confidence 78999999999999999999999999999
No 154
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.34 E-value=1.5e-12 Score=92.32 Aligned_cols=102 Identities=21% Similarity=0.236 Sum_probs=60.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCC--CCC-----cccc------cceeeEEEEEEEe-----CCeEEEEEEEeCCCcc
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDS--YIE-----SYIS------TIGVDFKIRTVEQ-----DGKTIKLQIWDTAGQE 68 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~--~~~-----~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~~ 68 (109)
...+|+++|..++|||||+++++... ... .+.. ..|.+.......+ ++..+.+++||++|+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46899999999999999999998621 111 0100 1222222222222 4456889999999999
Q ss_pred ccccchhhhhcCCcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 69 RFRTITSSYYRGAHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 69 ~~~~~~~~~~~~~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
.|...+..+++.+|++++ ++..+++... ....++|+++|+
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvVi 130 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVL 130 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEee
Confidence 999999999999999999 3332333211 123578888875
No 155
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.33 E-value=1e-12 Score=94.54 Aligned_cols=102 Identities=18% Similarity=0.092 Sum_probs=66.7
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHhC--CCCC------------------cccccceeeEEEEEEEeCCeEEEEEEE
Q 033918 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADD--SYIE------------------SYISTIGVDFKIRTVEQDGKTIKLQIW 62 (109)
Q Consensus 3 ~~~~~~~ki~liG~~~vGKtsl~~~~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~ 62 (109)
...+...+|+++|.+++|||||+++++.. .+.. ....+.. .....+... ...+.+|
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~--~~~~~~~~~--~~~i~li 82 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITIT--AAVTTCFWK--DHRINII 82 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------CCEEEEEET--TEEEEEE
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccc--cceEEEEEC--CeEEEEE
Confidence 44567899999999999999999999842 1100 1111111 111222332 3678999
Q ss_pred eCCCccccccchhhhhcCCcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 63 DTAGQERFRTITSSYYRGAHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
|++|+..+...+..+++.+|++++ ++..+++... ....++|+++|+
T Consensus 83 DTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivvi 136 (691)
T 1dar_A 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFA 136 (691)
T ss_dssp CCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred ECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEE
Confidence 999999999999999999999999 3333333311 122578988875
No 156
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.33 E-value=4e-12 Score=93.15 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=68.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCC-CC-------cc--------c--ccceeeEEEEEEE------------eCC
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY-IE-------SY--------I--STIGVDFKIRTVE------------QDG 54 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~-~~-------~~--------~--~~~~~~~~~~~~~------------~~~ 54 (109)
.+...+|+++|..++|||||+++++...- .. .+ . .|.........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 45678999999999999999999986411 00 00 0 1111111111122 133
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
....+++|||+|+.+|...+..+++.+|++++ ++..+++... ....++|+++|+
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilvi 157 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVI 157 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 47889999999999999999999999999998 4444444422 123578888875
No 157
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.33 E-value=1.7e-12 Score=88.30 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=56.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC--------CCCCc-------ccccceeeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADD--------SYIES-------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (109)
...++|+++|.+++|||||++++... .+... .....+.+.......+......+.+||++|+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 35689999999999999999999863 21110 0011222222222333333456889999999999
Q ss_pred ccchhhhhcCCcEEEE
Q 033918 71 RTITSSYYRGAHGIIV 86 (109)
Q Consensus 71 ~~~~~~~~~~~~~iv~ 86 (109)
......++..+|++++
T Consensus 89 ~~~~~~~~~~aD~~il 104 (405)
T 2c78_A 89 IKNMITGAAQMDGAIL 104 (405)
T ss_dssp HHHHHHHHTTCSSEEE
T ss_pred HHHHHHHHHHCCEEEE
Confidence 8888889999999998
No 158
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.32 E-value=2.6e-11 Score=80.54 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=32.0
Q ss_pred EEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 48 RTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 48 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
..+... .+.+++||++|+++++..|..|++++++++|
T Consensus 160 ~~~~~~--~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIf 196 (327)
T 3ohm_A 160 YPFDLQ--SVIFRMVDVGGQRSERRKWIHCFENVTSIMF 196 (327)
T ss_dssp EEEEET--TEEEEEEEECCSHHHHTTGGGGCSSCSEEEE
T ss_pred EEEEee--ceeeEEEEcCCchhHHHHHHHHhCCCCEEEE
Confidence 344443 4789999999999999999999999999999
No 159
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.32 E-value=1.3e-11 Score=83.95 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=54.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC---CCCCcccc--cceeeEEEEEEEe-------------C--C----eEEEEEE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADD---SYIESYIS--TIGVDFKIRTVEQ-------------D--G----KTIKLQI 61 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~i 61 (109)
...++|+++|..++|||||++++.+. .+..+..+ |....+....+.. + + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 45799999999999999999999843 23333333 4433333322211 1 1 1367999
Q ss_pred EeCCCccccccchhhhhcCCcEEEE
Q 033918 62 WDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 62 ~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
||++|++.|.......+..+|++++
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~il 110 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAIL 110 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEE
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEE
Confidence 9999999988777777888899998
No 160
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.31 E-value=5.1e-12 Score=86.71 Aligned_cols=100 Identities=21% Similarity=0.170 Sum_probs=59.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCcccccc-----------ch
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-----------IT 74 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~ 74 (109)
..+||+++|++|||||||++++.+.... ....+....+.....+..++. .+.+||++|..+... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 4689999999999999999999987642 111222222233345566664 568999999743221 11
Q ss_pred -hhhhcCCcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 75 -SSYYRGAHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 75 -~~~~~~~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
..++..+|++++ ++..+++... ......|+++|+
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~ 299 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVF 299 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 346778898887 3333443311 122467888775
No 161
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.31 E-value=7.1e-12 Score=81.60 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=25.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCC
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI 34 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~ 34 (109)
....+|+++|.+|+|||||++++++.++.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 34679999999999999999999998874
No 162
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.31 E-value=1.2e-11 Score=83.29 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=47.6
Q ss_pred eE-EEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcc---------ccccchhhhh
Q 033918 9 FK-LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE---------RFRTITSSYY 78 (109)
Q Consensus 9 ~k-i~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~~ 78 (109)
++ |+++|.+|+|||||++++.+..+.....+....+.....+.+++ ..+.+||++|.- .+...+ ..+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHH
Confidence 45 99999999999999999998775322222222234456667766 457899999962 222332 356
Q ss_pred cCCcEEEE
Q 033918 79 RGAHGIIV 86 (109)
Q Consensus 79 ~~~~~iv~ 86 (109)
..+|++++
T Consensus 256 ~~aD~il~ 263 (364)
T 2qtf_A 256 KYSDALIL 263 (364)
T ss_dssp GGSSEEEE
T ss_pred HhCCEEEE
Confidence 78999988
No 163
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.30 E-value=2.8e-12 Score=86.94 Aligned_cols=88 Identities=17% Similarity=0.128 Sum_probs=47.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCe---------------EEEEEEEeCCCccccc
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQERFR 71 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~ 71 (109)
...+|.++|.+|||||||++++.+.++.....|..+.+.+...+.+.+. ...+.+||++|..+..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4689999999999999999999987653333332222233334444332 2358999999976533
Q ss_pred c-------chhhhhcCCcEEEE----ecccchhh
Q 033918 72 T-------ITSSYYRGAHGIIV----GDLNSFLQ 94 (109)
Q Consensus 72 ~-------~~~~~~~~~~~iv~----~~~~s~~~ 94 (109)
. .+..+++.+|++++ ++.+++.+
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~ 134 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDDITH 134 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC--------
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcchhh
Confidence 2 45678899999988 44455544
No 164
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.30 E-value=1.9e-12 Score=80.31 Aligned_cols=100 Identities=20% Similarity=0.229 Sum_probs=53.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccc----------cccchh
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----------FRTITS 75 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~ 75 (109)
....+|+++|++|+|||||++++.+..+...+.++.|.......+..++ .+.+||++|... +.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 3467999999999999999999988765555556655433323333333 378999999742 222223
Q ss_pred hhh---cCCcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 76 SYY---RGAHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 76 ~~~---~~~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
.++ ..++++++ ++..++.... .....+|++++.
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 144 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 144 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 344 35677666 3333332211 122468877653
No 165
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.29 E-value=2.4e-12 Score=87.36 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=54.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC-------CCCc--cc-----ccceeeEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDS-------YIES--YI-----STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI 73 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~-------~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 73 (109)
.+||+++|..++|||||++++.... +... .+ ...+.+.......+......+.+||++|+++|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 5899999999999999999998631 1100 00 01122222122223323457889999999999888
Q ss_pred hhhhhcCCcEEEE
Q 033918 74 TSSYYRGAHGIIV 86 (109)
Q Consensus 74 ~~~~~~~~~~iv~ 86 (109)
...++..+|++++
T Consensus 83 ~~~~~~~aD~~il 95 (397)
T 1d2e_A 83 MITGTAPLDGCIL 95 (397)
T ss_dssp HHHTSSCCSEEEE
T ss_pred HHhhHhhCCEEEE
Confidence 8888999999999
No 166
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.29 E-value=1.4e-12 Score=92.73 Aligned_cols=78 Identities=19% Similarity=0.196 Sum_probs=55.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcc-------------------------------cccceeeEEEEEEEeCCe
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESY-------------------------------ISTIGVDFKIRTVEQDGK 55 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 55 (109)
..+||+++|.+++|||||+++|+.....-.. .+....+.....+.. .
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~--~ 243 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST--H 243 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC--S
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec--C
Confidence 4789999999999999999999865321110 011111112222333 2
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
...+.|||++|++++......++..+|++++
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~ll 274 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAIL 274 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEE
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEE
Confidence 3578999999999999888899999999999
No 167
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.28 E-value=2.5e-11 Score=82.67 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=56.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhC---CCCCcccc--cceeeEEEEEEEe-------------C--C----eEEEEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADD---SYIESYIS--TIGVDFKIRTVEQ-------------D--G----KTIKLQ 60 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 60 (109)
....++|+++|..++|||||++++.+. .+..+..+ |....+....+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 456799999999999999999999843 23333333 3333333322211 0 1 136799
Q ss_pred EEeCCCccccccchhhhhcCCcEEEE
Q 033918 61 IWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 61 i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
+||++|++.|.......+..+|++++
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~il 112 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAIL 112 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEE
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEE
Confidence 99999999988777777788999998
No 168
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.27 E-value=1.2e-11 Score=87.81 Aligned_cols=103 Identities=20% Similarity=0.226 Sum_probs=63.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC--CCCC-----ccccc------ceeeEEE--EEEEe---CCeEEEEEEEeCCCc
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYIE-----SYIST------IGVDFKI--RTVEQ---DGKTIKLQIWDTAGQ 67 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~--~~~~-----~~~~~------~~~~~~~--~~~~~---~~~~~~~~i~D~~g~ 67 (109)
+...+|+++|..++|||||+++++.. .+.. .+..+ .|.+... ..+.+ ++..+.+++||++|+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 46789999999999999999999752 1111 00000 1111110 11111 445688999999999
Q ss_pred cccccchhhhhcCCcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 68 ERFRTITSSYYRGAHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 68 ~~~~~~~~~~~~~~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
..|...+..++..+|++++ ++..+++... ....++|+++++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvvi 132 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVI 132 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEE
Confidence 9999888999999999998 3333333321 123578888775
No 169
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.27 E-value=2.7e-12 Score=85.75 Aligned_cols=96 Identities=19% Similarity=0.182 Sum_probs=61.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC-Cccc-ccceeeEEEEEEEeCCeEEEEEEEeCCCcc----ccccchhhhhcC---
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYI-ESYI-STIGVDFKIRTVEQDGKTIKLQIWDTAGQE----RFRTITSSYYRG--- 80 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~--- 80 (109)
+|+++|.+|||||||++++.+.+.. ..+. .|...+. ..+.+++ ...+.+||++|.. ++..+...+++.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~--g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~ 236 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL--GMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIER 236 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCE--EEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceE--EEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence 6889999999999999999876532 2222 2222222 2344443 1468899999963 344465666554
Q ss_pred CcEEEE----ec---ccchhhhc-------cC---CCCCCEEEee
Q 033918 81 AHGIIV----GD---LNSFLQQS-------FS---SSSTPFCLFL 108 (109)
Q Consensus 81 ~~~iv~----~~---~~s~~~~~-------~~---~~~~P~i~v~ 108 (109)
++++++ ++ +.+++... .. ..++|+++|+
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~ 281 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVA 281 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEE
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEE
Confidence 899888 44 56665532 11 2588988875
No 170
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.25 E-value=2.6e-11 Score=87.44 Aligned_cols=105 Identities=13% Similarity=0.083 Sum_probs=67.0
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHhC--CCCCc-----------ccc---cceeeEEE--EEEEeC-----CeEEEEE
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFADD--SYIES-----------YIS---TIGVDFKI--RTVEQD-----GKTIKLQ 60 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~~--~~~~~-----------~~~---~~~~~~~~--~~~~~~-----~~~~~~~ 60 (109)
..++..+|+++|..++|||||+.+++.. .+... +.+ ..+.+... ..+... +....+.
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 3466789999999999999999999743 11110 000 11111111 122221 2337899
Q ss_pred EEeCCCccccccchhhhhcCCcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 61 IWDTAGQERFRTITSSYYRGAHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 61 i~D~~g~~~~~~~~~~~~~~~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
|||++|+..|...+..+++.+|++++ ++..+.+... ....++|+++|+
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilvi 141 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFV 141 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999889999999999999 2222222211 123578988875
No 171
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.25 E-value=8.8e-12 Score=83.76 Aligned_cols=77 Identities=21% Similarity=0.150 Sum_probs=49.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccc--cceeeEEEEEEEeCCe---------------EEEEEEEeCCCcccc
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYIS--TIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQERF 70 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~ 70 (109)
.++|+++|.+|||||||++++.+..+.....| |.+.+. ..+.+++. ...+++||++|..+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~--g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT--GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS--SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE--EEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 47999999999999999999998764222211 222222 12333332 146899999998654
Q ss_pred c----cc---hhhhhcCCcEEEE
Q 033918 71 R----TI---TSSYYRGAHGIIV 86 (109)
Q Consensus 71 ~----~~---~~~~~~~~~~iv~ 86 (109)
. .+ ...+++.+|++++
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~ 102 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGH 102 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEE
T ss_pred ccccchHHHHHHHHHHhcCeEEE
Confidence 2 22 3345789999998
No 172
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.25 E-value=3e-11 Score=79.23 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=24.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCC
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSY 33 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~ 33 (109)
...+|+++|.+|+|||||++++++..+
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 467999999999999999999998876
No 173
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.25 E-value=3e-12 Score=85.88 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=41.8
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCcEEEE----e----------cccchhhhc-------c--CCCCCCEEEee
Q 033918 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIV----G----------DLNSFLQQS-------F--SSSSTPFCLFL 108 (109)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~----~----------~~~s~~~~~-------~--~~~~~P~i~v~ 108 (109)
+.+.+++||++|+++++.+|..|++++++++| + +..+|++.. . ...++|++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvg 257 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 257 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEE
Confidence 56889999999999999999999999999999 4 566776522 1 12578999885
No 174
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.25 E-value=9.6e-12 Score=81.74 Aligned_cols=70 Identities=31% Similarity=0.542 Sum_probs=35.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC-CCCCcc--------cccceeeEEEEEEEeCCeEEEEEEEeCCCc-------cc
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADD-SYIESY--------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ-------ER 69 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~ 69 (109)
...++|+++|++|+|||||++++.+. .++..+ .++.+...........+....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45789999999999999999998764 444333 122221111122222334578999999998 55
Q ss_pred cccchh
Q 033918 70 FRTITS 75 (109)
Q Consensus 70 ~~~~~~ 75 (109)
+..+..
T Consensus 96 ~~~l~~ 101 (301)
T 2qnr_A 96 FKTIIS 101 (301)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 555554
No 175
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.24 E-value=2.8e-11 Score=87.15 Aligned_cols=103 Identities=14% Similarity=0.168 Sum_probs=66.0
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHh--CCCCC-----------cccc---ccee--eEEEEEEEeCCeEEEEEEEeCC
Q 033918 4 EYDYLFKLLLIGDSGVGKSCLLLRFAD--DSYIE-----------SYIS---TIGV--DFKIRTVEQDGKTIKLQIWDTA 65 (109)
Q Consensus 4 ~~~~~~ki~liG~~~vGKtsl~~~~~~--~~~~~-----------~~~~---~~~~--~~~~~~~~~~~~~~~~~i~D~~ 65 (109)
+.+...+|+++|.+|+|||||+++++. +.+.. .+.+ ..+. ......+... ...+.+||++
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTP 83 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTP 83 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECc
Confidence 346689999999999999999999985 22211 0000 0000 0111223333 3678999999
Q ss_pred CccccccchhhhhcCCcEEEE----ecccchhhhc----cCCCCCCEEEee
Q 033918 66 GQERFRTITSSYYRGAHGIIV----GDLNSFLQQS----FSSSSTPFCLFL 108 (109)
Q Consensus 66 g~~~~~~~~~~~~~~~~~iv~----~~~~s~~~~~----~~~~~~P~i~v~ 108 (109)
|+..+...+..+++.+|++++ ++..++.... ....++|+++|+
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilvi 134 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFV 134 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEE
Confidence 999999889999999999999 2322333211 122478988875
No 176
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.24 E-value=8.4e-11 Score=78.76 Aligned_cols=101 Identities=18% Similarity=0.128 Sum_probs=60.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccc---------cchhh
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR---------TITSS 76 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~ 76 (109)
...++++++|.+|||||||++++.+..+.....+..........+... ...+.+||++|..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 456899999999999999999999876422212211112222233333 3568899999975322 11223
Q ss_pred hhcCCcEEEE----eccc--chhhhc-------cCCCCCCEEEee
Q 033918 77 YYRGAHGIIV----GDLN--SFLQQS-------FSSSSTPFCLFL 108 (109)
Q Consensus 77 ~~~~~~~iv~----~~~~--s~~~~~-------~~~~~~P~i~v~ 108 (109)
+...+|++++ ++.. +++... ......|+++|+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~ 287 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVI 287 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEE
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3446888877 3333 444321 111378999886
No 177
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.23 E-value=5e-11 Score=79.88 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=24.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIE 35 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~ 35 (109)
..+|+++|++|+|||||++++.+..+.+
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp 61 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLP 61 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCC
Confidence 4499999999999999999999987643
No 178
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.22 E-value=4.3e-12 Score=87.03 Aligned_cols=89 Identities=21% Similarity=0.243 Sum_probs=58.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC--CCCCccc-------c--------------------cceeeEEEEEEEeCCeE
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYIESYI-------S--------------------TIGVDFKIRTVEQDGKT 56 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~--~~~~~~~-------~--------------------~~~~~~~~~~~~~~~~~ 56 (109)
...++|+++|..++|||||+++++.. .+...+. . ..+.+.......++...
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 34689999999999999999999864 3321110 0 01111111111222234
Q ss_pred EEEEEEeCCCccccccchhhhhcCCcEEEE---ecccchhh
Q 033918 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIV---GDLNSFLQ 94 (109)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~---~~~~s~~~ 94 (109)
..+.+||++|+++|...+..++..+|++++ ....+|++
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~ 124 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEA 124 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCcccc
Confidence 578999999999999888899999999999 22356664
No 179
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.22 E-value=2.5e-11 Score=81.34 Aligned_cols=53 Identities=25% Similarity=0.399 Sum_probs=41.2
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEE----ec----------ccchhhhc-------c--CCCCCCEEEee
Q 033918 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIV----GD----------LNSFLQQS-------F--SSSSTPFCLFL 108 (109)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~----~~----------~~s~~~~~-------~--~~~~~P~i~v~ 108 (109)
.+.+++||++|++.++..|..|++++++++| ++ ..+|+... . ...++|++|++
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~ 267 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL 267 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEE
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEE
Confidence 4778999999999999999999999999999 44 23444421 1 22579999885
No 180
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.22 E-value=1.1e-11 Score=88.97 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=66.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhCCCCC-------------cccc---cceeeEEEEEEEeCCeEEEEEEEeCCCcc
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-------------SYIS---TIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~~~~~-------------~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (109)
.+...+|+++|++|+|||||++++....... .+.+ ..+..+......+......+++||++|++
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 3557899999999999999999998433211 1110 11222222222222234678999999999
Q ss_pred ccccchhhhhcCCcEEEE-ecc---cchhh---hc-cCCCCCCEEEee
Q 033918 69 RFRTITSSYYRGAHGIIV-GDL---NSFLQ---QS-FSSSSTPFCLFL 108 (109)
Q Consensus 69 ~~~~~~~~~~~~~~~iv~-~~~---~s~~~---~~-~~~~~~P~i~v~ 108 (109)
.+...+..+++.+|++++ .|. ..... +. ....++|+++++
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~ 133 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVV 133 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEe
Confidence 998888999999999998 221 11111 11 122478998875
No 181
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.21 E-value=2.1e-11 Score=84.30 Aligned_cols=76 Identities=16% Similarity=0.088 Sum_probs=42.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh--CCCCCc-------------------------------ccccceeeEEEEEEEeC
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFAD--DSYIES-------------------------------YISTIGVDFKIRTVEQD 53 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~--~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 53 (109)
..++|+++|..++|||||+++|+. +.+... ...|.. .....+..+
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~--~~~~~~~~~ 119 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVE--VGRAYFETE 119 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC------------------------------CCEEECS
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEE--eeeEEEecC
Confidence 468999999999999999999874 222100 001111 111122333
Q ss_pred CeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 54 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
...+.+||++|+++|......++..+|++++
T Consensus 120 --~~~~~iiDtPGh~~f~~~~~~~~~~aD~~il 150 (467)
T 1r5b_A 120 --HRRFSLLDAPGHKGYVTNMINGASQADIGVL 150 (467)
T ss_dssp --SEEEEECCCCC-----------TTSCSEEEE
T ss_pred --CeEEEEEECCCcHHHHHHHHhhcccCCEEEE
Confidence 3568999999999999888888999999999
No 182
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.20 E-value=3.3e-11 Score=82.62 Aligned_cols=79 Identities=27% Similarity=0.328 Sum_probs=53.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCC--CCc----------ccccc-------------------ee--eEEEEEEEe
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY--IES----------YISTI-------------------GV--DFKIRTVEQ 52 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~--~~~----------~~~~~-------------------~~--~~~~~~~~~ 52 (109)
...+||+++|..++|||||+++|+.+.. ... ..++. +. +.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 3468999999999999999999986531 110 01111 11 011111222
Q ss_pred CCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 53 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
....+.+||++|+++|...+..++..+|++++
T Consensus 102 --~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~il 133 (434)
T 1zun_B 102 --AKRKFIIADTPGHEQYTRNMATGASTCDLAII 133 (434)
T ss_dssp --SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEE
T ss_pred --CCceEEEEECCChHHHHHHHHHHHhhCCEEEE
Confidence 23568899999999998888889999999999
No 183
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.20 E-value=3.2e-12 Score=90.60 Aligned_cols=78 Identities=21% Similarity=0.185 Sum_probs=39.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCC--CC-----------------------------CcccccceeeEEEEEEEeCCe
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDS--YI-----------------------------ESYISTIGVDFKIRTVEQDGK 55 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 55 (109)
..++|+++|.+++|||||+++|+... .. .+..+....+.....+.. .
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~--~ 253 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES--D 253 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe--C
Confidence 46899999999999999999996421 00 000111111111112222 3
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
...+.|||++|+++|......++..+|++++
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alL 284 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVL 284 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCS
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEE
Confidence 4578999999999999888888899999988
No 184
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.19 E-value=6e-12 Score=86.86 Aligned_cols=77 Identities=17% Similarity=0.152 Sum_probs=55.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC--CCCCc-------------------------------ccccceeeEEEEEEEe
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYIES-------------------------------YISTIGVDFKIRTVEQ 52 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~--~~~~~-------------------------------~~~~~~~~~~~~~~~~ 52 (109)
...++|+++|.+++|||||+++|+.. .+... ...|.. .....+..
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~--~~~~~~~~ 82 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITID--IALWKFET 82 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCS--CSCEEEEC
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEE--EEEEEEec
Confidence 35699999999999999999999864 22110 001111 11122233
Q ss_pred CCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 53 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
....+.+||++|+++|......++..+|++++
T Consensus 83 --~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~il 114 (458)
T 1f60_A 83 --PKYQVTVIDAPGHRDFIKNMITGTSQADCAIL 114 (458)
T ss_dssp --SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEE
T ss_pred --CCceEEEEECCCcHHHHHHHHhhhhhCCEEEE
Confidence 33578999999999999888889999999999
No 185
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.18 E-value=3.5e-11 Score=84.71 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=26.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCC
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI 34 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~ 34 (109)
+...+|+++|.+|+|||||++++++.++.
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccc
Confidence 45789999999999999999999998763
No 186
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.15 E-value=1.3e-10 Score=83.71 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=24.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCC
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSY 33 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~ 33 (109)
..++|+++|.+|+|||||++++++.++
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~ 94 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENL 94 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999999998775
No 187
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.15 E-value=6.2e-11 Score=79.30 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=25.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI 34 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~ 34 (109)
...+|+++|.+|+|||||++++.+.++.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3579999999999999999999988864
No 188
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.13 E-value=1.1e-10 Score=79.26 Aligned_cols=78 Identities=22% Similarity=0.242 Sum_probs=40.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-cccc-cceeeEEEEEE-------------------EeCC-eEEEEEEEeCCC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIE-SYIS-TIGVDFKIRTV-------------------EQDG-KTIKLQIWDTAG 66 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~-~~~~-~~~~~~~~~~~-------------------~~~~-~~~~~~i~D~~g 66 (109)
+||+++|.+|||||||++++.+.+... .++. |.........+ .+++ ...++.+||++|
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999876321 2211 11111111111 1122 247799999999
Q ss_pred ccc----cccchh---hhhcCCcEEEE
Q 033918 67 QER----FRTITS---SYYRGAHGIIV 86 (109)
Q Consensus 67 ~~~----~~~~~~---~~~~~~~~iv~ 86 (109)
... .+.+.. .+++.+|++++
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~ 107 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIH 107 (397)
T ss_dssp --------------CCCSSTTCSEEEE
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEE
Confidence 753 222333 44688999998
No 189
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.12 E-value=2.6e-11 Score=90.91 Aligned_cols=80 Identities=18% Similarity=0.113 Sum_probs=53.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCC-------CCC-------cccccceeeEEEEEEEeCCeEEEEEEEeCCCcccccc
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDS-------YIE-------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT 72 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 72 (109)
..++|+++|..++|||||++++.+.. +.. ....+.|.+.....+.++.....+.+||++|+++|..
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~ 374 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVK 374 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHH
Confidence 46899999999999999999998631 100 0011222222111122333345789999999999988
Q ss_pred chhhhhcCCcEEEE
Q 033918 73 ITSSYYRGAHGIIV 86 (109)
Q Consensus 73 ~~~~~~~~~~~iv~ 86 (109)
....++..+|++++
T Consensus 375 ~mi~gas~AD~aIL 388 (1289)
T 3avx_A 375 NMITGAAQMDGAIL 388 (1289)
T ss_dssp HHHHTSCCCSEEEE
T ss_pred HHHHHHhhCCEEEE
Confidence 88888999999999
No 190
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.11 E-value=2.1e-10 Score=78.40 Aligned_cols=64 Identities=27% Similarity=0.407 Sum_probs=36.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcc--------cccceeeEEEEEEEeCCeEEEEEEEeCCCccc
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESY--------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (109)
...++|+++|++|+|||||++++.+..+.... .++.+.......+...+....+.+||+.|...
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhh
Confidence 35788999999999999999999987653211 12222111111111223345789999999764
No 191
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.10 E-value=5.6e-11 Score=80.12 Aligned_cols=67 Identities=7% Similarity=0.104 Sum_probs=50.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~ 86 (109)
+|+++|.+++|||||++++. ....|.+..+ ..+..+ ...+.+||++|+++|......+++.+|++++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~--~~~~~~--~~~i~iiDtPGh~~f~~~~~~~~~~aD~ail 89 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITM--YNNDKE--GRNMVFVDAHSYPKTLKSLITALNISDIAVL 89 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEE--EEECSS--SSEEEEEECTTTTTCHHHHHHHHHTCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeE--EEEecC--CeEEEEEECCChHHHHHHHHHHHHHCCEEEE
Confidence 99999999999999999997 1222332222 223333 3468999999999998777788899999999
No 192
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.98 E-value=6.7e-10 Score=74.85 Aligned_cols=76 Identities=20% Similarity=0.205 Sum_probs=48.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC-CCcccc-cceeeEEEEEEEeCC-------------------eEEEEEEEeCCCc
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSY-IESYIS-TIGVDFKIRTVEQDG-------------------KTIKLQIWDTAGQ 67 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~ 67 (109)
++|+++|.+|+|||||++++.+... ...++. |...+.. ...+.+ ....+++||++|.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG--VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE--EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee--eEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 5899999999999999999987642 122221 1221111 112211 2356899999998
Q ss_pred cccc----cc---hhhhhcCCcEEEE
Q 033918 68 ERFR----TI---TSSYYRGAHGIIV 86 (109)
Q Consensus 68 ~~~~----~~---~~~~~~~~~~iv~ 86 (109)
.+.. .+ ...+++.+|++++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~ 105 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAH 105 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEE
T ss_pred cccccccchHHHHHHHHHHhCCEEEE
Confidence 6542 22 2345789999998
No 193
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.89 E-value=4e-09 Score=71.57 Aligned_cols=80 Identities=19% Similarity=0.185 Sum_probs=52.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCC-CCcccccceeeEEEEEEEeCCe---------------EEEEEEEeCCCccc-
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQER- 69 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~- 69 (109)
...++.++|++|+|||||++++.+.+. .....|....+.....+.+.+. ...+.+||++|...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 467999999999999999999998764 3333332222233334444431 13578999998432
Q ss_pred ------cccchhhhhcCCcEEEE
Q 033918 70 ------FRTITSSYYRGAHGIIV 86 (109)
Q Consensus 70 ------~~~~~~~~~~~~~~iv~ 86 (109)
....+...++.+|+++.
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~ 121 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQ 121 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEE
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 22244556788998887
No 194
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.88 E-value=4.7e-09 Score=70.89 Aligned_cols=77 Identities=18% Similarity=0.158 Sum_probs=52.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCccc----cccc---hhhhhcC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTI---TSSYYRG 80 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~ 80 (109)
.-+|.++|.||||||||++++.+.+......|....+.....+.+.+ .++++.|++|--+ -..+ .....+.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 35899999999999999999998664333333333445555667766 4678999998521 1111 2234578
Q ss_pred CcEEEE
Q 033918 81 AHGIIV 86 (109)
Q Consensus 81 ~~~iv~ 86 (109)
||++++
T Consensus 150 ad~il~ 155 (376)
T 4a9a_A 150 CNLLFI 155 (376)
T ss_dssp CSEEEE
T ss_pred cCcccc
Confidence 999998
No 195
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.79 E-value=3e-09 Score=68.69 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCcc
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (109)
++++++|.+|||||||++++.+.... ...++.+.+.....+.... .+.+||++|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPGITKGIQWFSLEN---GVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc-ccCCCCCCccceEEEEeCC---CEEEEECCCcc
Confidence 69999999999999999999977642 2233333222222223322 47899999964
No 196
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.78 E-value=1.1e-08 Score=66.63 Aligned_cols=57 Identities=28% Similarity=0.355 Sum_probs=34.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCc
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (109)
..++++++|.+|||||||++++.+.+.. ...+..+.+.....+.... .+.++||+|-
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~ 175 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIA-KTGDRPGITTSQQWVKVGK---ELELLDTPGI 175 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCcee-ecCCCCCeeeeeEEEEeCC---CEEEEECcCc
Confidence 4689999999999999999999976532 2222222222222223332 3789999995
No 197
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.73 E-value=6.3e-09 Score=73.31 Aligned_cols=101 Identities=14% Similarity=0.164 Sum_probs=63.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCC-----------------CCccc---ccceeeEEEEEEEeCCeEEEEEEEeCC
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-----------------IESYI---STIGVDFKIRTVEQDGKTIKLQIWDTA 65 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~-----------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~ 65 (109)
++..+|+++|..++|||||..+++...- ..++. ...|++..+..+.+..+...++|.|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 3578999999999999999999862110 00000 011111111112222234678999999
Q ss_pred CccccccchhhhhcCCcEEEE--eccc--------chhhhccCCCCCCEEEee
Q 033918 66 GQERFRTITSSYYRGAHGIIV--GDLN--------SFLQQSFSSSSTPFCLFL 108 (109)
Q Consensus 66 g~~~~~~~~~~~~~~~~~iv~--~~~~--------s~~~~~~~~~~~P~i~v~ 108 (109)
|+..|.......++.+|++|+ +..+ -|... ...++|.++++
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a--~~~~lp~i~fI 159 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVC--RMRATPVMTFV 159 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHH--HHTTCCEEEEE
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHH--HHhCCceEEEE
Confidence 999999999999999999999 1111 22222 33688988875
No 198
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.68 E-value=2e-09 Score=67.35 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=29.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCccccccee
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGV 43 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~~~~~ 43 (109)
...+|+++|.+|||||||++++....+...+.++.+.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~ 73 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAG 73 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEEC
Confidence 4689999999999999999999987655444444443
No 199
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.67 E-value=1.7e-08 Score=68.98 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=54.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccc----cccchhhh---hcCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSSY---YRGA 81 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~ 81 (109)
.|+++|++|+|||||++++.+.... ..+..+ ........+..++ ...+.+||++|..+ ...+...+ ...+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ft-Tl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFT-TLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTC-SSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccc-eecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 4789999999999999999876421 111111 1111222333332 24578999999632 22233333 3458
Q ss_pred cEEEE-ec--ccchhhhc--------c--CCCCCCEEEee
Q 033918 82 HGIIV-GD--LNSFLQQS--------F--SSSSTPFCLFL 108 (109)
Q Consensus 82 ~~iv~-~~--~~s~~~~~--------~--~~~~~P~i~v~ 108 (109)
+.++. .| +.++..+. . .....|.++|+
T Consensus 237 ~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl 276 (416)
T 1udx_A 237 RVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL 276 (416)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE
T ss_pred HhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE
Confidence 88877 22 44554432 1 11367888775
No 200
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.66 E-value=1.3e-07 Score=64.39 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=45.7
Q ss_pred EEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE----ec----------ccchhhhc-------c--CCCCCCEE
Q 033918 49 TVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV----GD----------LNSFLQQS-------F--SSSSTPFC 105 (109)
Q Consensus 49 ~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~----~~----------~~s~~~~~-------~--~~~~~P~i 105 (109)
.+.+++ +.+++||++|++.++..|..|++++++++| ++ ..+|++.. . ...++|++
T Consensus 211 ~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pii 288 (402)
T 1azs_C 211 KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 288 (402)
T ss_dssp EEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEE
T ss_pred EeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEE
Confidence 444543 789999999999999999999999999999 55 66776622 1 23679999
Q ss_pred Eee
Q 033918 106 LFL 108 (109)
Q Consensus 106 ~v~ 108 (109)
||+
T Consensus 289 Lvg 291 (402)
T 1azs_C 289 LFL 291 (402)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 201
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.64 E-value=4.2e-08 Score=65.68 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
....+|+++|.+|+|||||++++..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999863
No 202
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.50 E-value=4.1e-07 Score=61.22 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=40.7
Q ss_pred ccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE----ec----------ccchhhhc-------c
Q 033918 39 STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV----GD----------LNSFLQQS-------F 97 (109)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~----~~----------~~s~~~~~-------~ 97 (109)
+|.|... ..+.++ .+.+.+||++|++.++..|..|+.++++++| ++ ..+|+... .
T Consensus 187 ~T~Gi~~--~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~ 262 (362)
T 1zcb_A 187 PTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN 262 (362)
T ss_dssp CCSSEEE--EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred CccceEE--EEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence 3445332 344554 3789999999999999999999999999999 44 45565421 1
Q ss_pred --CCCCCCEEEee
Q 033918 98 --SSSSTPFCLFL 108 (109)
Q Consensus 98 --~~~~~P~i~v~ 108 (109)
...++|+||++
T Consensus 263 ~~~~~~~piILv~ 275 (362)
T 1zcb_A 263 NRVFSNVSIILFL 275 (362)
T ss_dssp CGGGTTSEEEEEE
T ss_pred chhhCCCCEEEEE
Confidence 23579999886
No 203
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.47 E-value=5.1e-07 Score=60.83 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=35.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC-----CCCCcccccceeeEEEEEEEeCCeEEEEEEEeCCCc
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADD-----SYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (109)
..+++++|.+|+|||||+|++.+. +.. ......+.+.....+..... +.++|++|-
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~-~~~~~~gtT~~~~~~~~~~~---~~liDtPG~ 222 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVI-TTSYFPGTTLDMIEIPLESG---ATLYDTPGI 222 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCC-EEEECTTSSCEEEEEECSTT---CEEEECCSC
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccce-eecCCCCeEEeeEEEEeCCC---eEEEeCCCc
Confidence 357999999999999999999875 211 11111222223333444433 789999994
No 204
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.45 E-value=9e-09 Score=67.56 Aligned_cols=80 Identities=11% Similarity=0.040 Sum_probs=60.6
Q ss_pred HHHHHHHhCCCC-CcccccceeeEEEEEEEeCCeEEEEEEEeCCCccccccchhhhhcCCcEEEE----eccc-chhhhc
Q 033918 23 CLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV----GDLN-SFLQQS 96 (109)
Q Consensus 23 sl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~iv~----~~~~-s~~~~~ 96 (109)
+++.++..+.|. ..+.||.|..+. ..+..++ ++.+||+ ++++..+++.+++++|++++ +++. +|+.++
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888889998 889999995544 3332222 5889999 89999999999999999999 6665 666543
Q ss_pred c-----CCCCCCEEEee
Q 033918 97 F-----SSSSTPFCLFL 108 (109)
Q Consensus 97 ~-----~~~~~P~i~v~ 108 (109)
. ...++|+++|+
T Consensus 106 ~~l~~~~~~~~piilv~ 122 (301)
T 1u0l_A 106 KFLVLAEKNELETVMVI 122 (301)
T ss_dssp HHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHCCCCEEEEE
Confidence 1 12578998875
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.41 E-value=5.1e-07 Score=65.37 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=62.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHhC--------CCCC--cc------cccceeeEEE--EEEEeC-----CeEEEEEE
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFADD--------SYIE--SY------ISTIGVDFKI--RTVEQD-----GKTIKLQI 61 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~~--------~~~~--~~------~~~~~~~~~~--~~~~~~-----~~~~~~~i 61 (109)
-++..+|+++|...+|||||..+++.. +... .+ ....|++..+ ..+... ...+.+++
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 357789999999999999999998621 1000 00 0011111111 112221 12478999
Q ss_pred EeCCCccccccchhhhhcCCcEEEE--ecccchhh-----hc-cCCCCCCEEEee
Q 033918 62 WDTAGQERFRTITSSYYRGAHGIIV--GDLNSFLQ-----QS-FSSSSTPFCLFL 108 (109)
Q Consensus 62 ~D~~g~~~~~~~~~~~~~~~~~iv~--~~~~s~~~-----~~-~~~~~~P~i~v~ 108 (109)
.|||||..|.......++-+|++++ ...+-.+. +. ....++|.++++
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~i 144 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYV 144 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEE
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 9999999999988999999999998 21111111 11 123578888876
No 206
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.37 E-value=1.1e-08 Score=73.23 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=54.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh--CCCCC-----------ccc---ccceeeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD--DSYIE-----------SYI---STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~--~~~~~-----------~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (109)
..+|.++|..++|||||..+++. +.... ++. ...|++..+..+.+..+...+++.|||||..|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 35799999999999999999862 21111 000 001222222233333345678999999999999
Q ss_pred cchhhhhcCCcEEEE
Q 033918 72 TITSSYYRGAHGIIV 86 (109)
Q Consensus 72 ~~~~~~~~~~~~iv~ 86 (109)
......++-+|++++
T Consensus 82 ~Ev~raL~~~Dgavl 96 (638)
T 3j25_A 82 AEVYRSLSVLDGAIL 96 (638)
T ss_dssp HHHHHHHTTCSEEEC
T ss_pred HHHHHHHHHhCEEEE
Confidence 999999999999998
No 207
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.36 E-value=5.3e-07 Score=60.32 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...|+++|.+|+|||||++++.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 67899999999999999999985
No 208
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.32 E-value=5.7e-06 Score=60.44 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=24.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCC
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDSY 33 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~~ 33 (109)
...+|+++|..++||||+++++++..+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 357999999999999999999998776
No 209
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.28 E-value=7.6e-07 Score=59.98 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=35.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-----CcccccceeeEEEEEEEeCCeEEEEEEEeCCCcc
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSYI-----ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (109)
..+++++|.+|+|||||+|++.+.... .......+.+.....+.+.+. +.++|++|-.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~ 222 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGII 222 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBC
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcC
Confidence 357999999999999999999875311 111222222222333344433 7899999953
No 210
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.24 E-value=1.3e-06 Score=62.10 Aligned_cols=61 Identities=25% Similarity=0.211 Sum_probs=37.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhCCCCCcccc-----cceeeEEEEEEEe-CCeEEEEEEEeCCCcc
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYIS-----TIGVDFKIRTVEQ-DGKTIKLQIWDTAGQE 68 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~ 68 (109)
....+|+++|.+|+|||||+|++.+....-.... |.+. ..+.... ......+.++||+|-.
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi--~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGI--WMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSE--EEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEE--EEeecccccCCCceEEEecCCCcC
Confidence 3468899999999999999999998763212222 2221 1111111 1112457899999964
No 211
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.07 E-value=2.6e-06 Score=55.16 Aligned_cols=26 Identities=31% Similarity=0.673 Sum_probs=22.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCC
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
+.++++++|++|+|||||++.+.+..
T Consensus 1 f~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp CEEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999999988643
No 212
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.99 E-value=2.3e-05 Score=53.79 Aligned_cols=26 Identities=31% Similarity=0.706 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDSY 33 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~~ 33 (109)
.++++++|++|+|||||++.+.+..+
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccc
Confidence 46799999999999999999987643
No 213
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.91 E-value=8.4e-06 Score=49.61 Aligned_cols=23 Identities=30% Similarity=0.768 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999988653
No 214
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.85 E-value=1.1e-05 Score=48.96 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
--++++|++|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999998763
No 215
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.83 E-value=1.9e-05 Score=47.38 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=22.3
Q ss_pred CCCCCCceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 1 ~~~~~~~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
|+........++++|++|+||||+++.+..
T Consensus 1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp --CCCTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCccCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 444444456799999999999999998753
No 216
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.80 E-value=1.4e-05 Score=49.22 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
-.++++|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999875
No 217
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.76 E-value=2.1e-05 Score=48.74 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
...+++++|.+|+|||||++++...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999865
No 218
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.74 E-value=2e-05 Score=47.91 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033918 11 LLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~ 30 (109)
++++|++|+||||+++.+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999874
No 219
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.73 E-value=2.2e-05 Score=48.09 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
-++++|++|+||||+++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999998754
No 220
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.72 E-value=2.4e-05 Score=48.07 Aligned_cols=21 Identities=38% Similarity=0.675 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 033918 11 LLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~ 31 (109)
|+++|++|+|||||+++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999999754
No 221
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.71 E-value=2.2e-05 Score=47.60 Aligned_cols=24 Identities=38% Similarity=0.361 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.-.++++|++|+||||+++.+.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346899999999999999998754
No 222
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.71 E-value=2.4e-05 Score=48.40 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
-++++|++|+|||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999998753
No 223
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.70 E-value=2.5e-05 Score=49.07 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
--++++|++|+|||||++.+.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 35889999999999999998764
No 224
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.69 E-value=2e-05 Score=47.39 Aligned_cols=18 Identities=44% Similarity=0.691 Sum_probs=16.4
Q ss_pred EEEEEcCCCCCHHHHHHH
Q 033918 10 KLLLIGDSGVGKSCLLLR 27 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~ 27 (109)
-++++|++|+|||||++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999994
No 225
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.68 E-value=2.9e-05 Score=48.10 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.--++++|++|+|||||++++...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 346889999999999999998753
No 226
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.68 E-value=2.8e-05 Score=48.63 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998763
No 227
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.65 E-value=3.3e-05 Score=47.83 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
--++++|++|+||||+++.+...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35889999999999999999765
No 228
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.64 E-value=0.00011 Score=50.69 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=21.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
....-|+++|.+++|||+|+|++++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 3456789999999999999999985
No 229
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.62 E-value=4.8e-05 Score=45.51 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.-|++.|.+|+||||+++.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999876
No 230
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.61 E-value=5e-05 Score=46.96 Aligned_cols=24 Identities=33% Similarity=0.249 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
....+.++|++|+|||||++.+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998753
No 231
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.59 E-value=4.6e-05 Score=46.92 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.-|+++|++|+||||+++++...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999998753
No 232
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.58 E-value=4.9e-05 Score=45.40 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.++++|+.|+|||||++.+.+.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999987643
No 233
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.57 E-value=4.6e-05 Score=45.25 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
.|++.|.+|+||||+++.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 234
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.56 E-value=5.5e-05 Score=45.10 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
..|+++|++|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 235
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.56 E-value=5.8e-05 Score=44.71 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 033918 9 FKLLLIGDSGVGKSCLLLRF 28 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~ 28 (109)
.-|++.|.+|+||||+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 236
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.55 E-value=5.5e-05 Score=46.29 Aligned_cols=24 Identities=38% Similarity=0.601 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
..++++|++|+||||+++.+.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999987643
No 237
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.55 E-value=4.9e-05 Score=48.15 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999987643
No 238
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.55 E-value=7.3e-05 Score=45.94 Aligned_cols=24 Identities=17% Similarity=0.005 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
....|++.|.+|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999863
No 239
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.54 E-value=6e-05 Score=46.62 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 033918 9 FKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~ 29 (109)
++|++.|.+|+||||+++.+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999985
No 240
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.53 E-value=6.2e-05 Score=45.65 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
-++++|++|+||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999864
No 241
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.53 E-value=6.3e-05 Score=46.19 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
-.++++|++|+||||+++.+.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999854
No 242
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.53 E-value=6.3e-05 Score=46.57 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
++|++.|++|+||||+++++..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999853
No 243
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.52 E-value=6.3e-05 Score=45.07 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.-|++.|.+|+||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 244
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.52 E-value=7.4e-05 Score=46.03 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
....+.++|++|+||||+++.+.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998765
No 245
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.51 E-value=7.4e-05 Score=47.28 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 033918 9 FKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~ 29 (109)
-.++++|++|+||||+++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999987
No 246
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.50 E-value=7.9e-05 Score=45.46 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=22.9
Q ss_pred CCCCCCceeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 1 ~~~~~~~~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
|.........|++.|.+|+||||+++.+...
T Consensus 1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 3334455678999999999999999998765
No 247
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.50 E-value=8.2e-05 Score=45.63 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
-.|+++|++|+||||+++.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
No 248
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.48 E-value=6.4e-05 Score=47.28 Aligned_cols=22 Identities=41% Similarity=0.439 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999987644
No 249
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.48 E-value=0.0001 Score=45.19 Aligned_cols=25 Identities=28% Similarity=0.597 Sum_probs=21.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...+.|++.|.+|+||||+++.+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999864
No 250
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.48 E-value=7.9e-05 Score=47.39 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998754
No 251
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.47 E-value=7.9e-05 Score=45.69 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
..|+++|.+|+||||+++.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998854
No 252
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.47 E-value=7.7e-05 Score=45.80 Aligned_cols=21 Identities=33% Similarity=0.699 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
+++++|++|+||||+++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 578999999999999998765
No 253
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.46 E-value=7.6e-05 Score=48.04 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988654
No 254
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.46 E-value=8.7e-05 Score=45.54 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
..-|+++|++|+||||+++.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998753
No 255
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.45 E-value=0.0001 Score=44.91 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
.|++.|.+|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999864
No 256
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.45 E-value=8e-05 Score=44.85 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.-.++++|++|+|||+|++.+.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998764
No 257
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.44 E-value=8.2e-05 Score=48.27 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988653
No 258
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.44 E-value=0.0001 Score=44.48 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...|+++|.+|+||||+.+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999853
No 259
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.44 E-value=9.4e-05 Score=46.91 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988654
No 260
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.44 E-value=9.3e-05 Score=46.48 Aligned_cols=20 Identities=35% Similarity=0.703 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 033918 10 KLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~ 29 (109)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999876
No 261
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.43 E-value=0.0001 Score=44.45 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
.|++.|.+|+||||+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 262
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.43 E-value=0.0001 Score=45.12 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.+|+++|.+|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999875
No 263
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.43 E-value=0.0001 Score=49.60 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.++++|++|+|||||++.+.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58999999999999999998754
No 264
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.43 E-value=9.8e-05 Score=47.13 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998654
No 265
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.42 E-value=9.3e-05 Score=46.32 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988654
No 266
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.42 E-value=0.00012 Score=44.36 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...|++.|.+|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999853
No 267
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.42 E-value=9.1e-05 Score=45.96 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
-++++|++|+|||||++.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 268
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.42 E-value=8.8e-05 Score=47.55 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988654
No 269
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.42 E-value=0.00013 Score=44.24 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
....|+++|.+|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998654
No 270
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.41 E-value=0.00011 Score=46.79 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998654
No 271
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.41 E-value=0.00013 Score=43.93 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~ 29 (109)
...|+++|.+|+||||+++.+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999986
No 272
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.41 E-value=0.00013 Score=45.37 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
..|.++|++|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 273
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.41 E-value=9.1e-05 Score=47.80 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988654
No 274
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.40 E-value=0.00012 Score=44.19 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
..|++.|.+|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999754
No 275
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.40 E-value=9.8e-05 Score=47.59 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999987654
No 276
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.40 E-value=0.00013 Score=45.45 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
+.|+++|+||+||+|.+.++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999863
No 277
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.39 E-value=0.00012 Score=48.24 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.=.++++|++|+|||||++.+.+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 34689999999999999999763
No 278
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.39 E-value=0.0001 Score=46.80 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988654
No 279
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.39 E-value=0.00011 Score=46.85 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998764
No 280
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.39 E-value=0.0002 Score=49.02 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
...++++|++|+|||||++.+.+-.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 4479999999999999999998743
No 281
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.39 E-value=0.00012 Score=47.29 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998764
No 282
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.39 E-value=0.00012 Score=46.14 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988654
No 283
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.39 E-value=0.00014 Score=43.43 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
-.+++.|++|+|||++++.+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998764
No 284
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.38 E-value=0.00013 Score=44.29 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.-++++|.+|+|||||++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4588999999999999999875
No 285
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.38 E-value=0.00011 Score=46.95 Aligned_cols=22 Identities=50% Similarity=0.678 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999987654
No 286
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.37 E-value=0.0001 Score=45.86 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998754
No 287
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.37 E-value=0.00012 Score=47.01 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999998654
No 288
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.37 E-value=0.00011 Score=47.11 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988654
No 289
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.37 E-value=0.00013 Score=47.00 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
-.++++|++|+||||+++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3589999999999999999764
No 290
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.37 E-value=0.00013 Score=47.42 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999988654
No 291
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.36 E-value=0.00012 Score=45.30 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
++|++.|.+|+||||+++.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999854
No 292
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.36 E-value=0.00011 Score=49.22 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.-+++++|++|+|||||++.+.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999988653
No 293
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.36 E-value=0.00013 Score=47.15 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988654
No 294
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.35 E-value=0.00016 Score=43.64 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...|++.|.+|+||||+++.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998753
No 295
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.35 E-value=7e-05 Score=46.93 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=14.7
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 033918 10 KLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~ 29 (109)
-++++|++|+||||+++.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999988
No 296
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.35 E-value=0.00014 Score=48.35 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHH
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~ 29 (109)
....+.++|++|+|||||++.+.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999987
No 297
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.34 E-value=0.00015 Score=47.47 Aligned_cols=23 Identities=39% Similarity=0.375 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.++++|++|+|||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999987654
No 298
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.34 E-value=0.00013 Score=43.78 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
+|+++|.+|+||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998753
No 299
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.34 E-value=0.00018 Score=45.65 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
..++|++.|++|+||||+++++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999863
No 300
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.34 E-value=0.00025 Score=43.60 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.....|.++|.+|+||||+++.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999998754
No 301
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.34 E-value=0.00016 Score=43.47 Aligned_cols=23 Identities=43% Similarity=0.606 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...|++.|.+|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45699999999999999999863
No 302
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.33 E-value=0.00018 Score=44.11 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
+.|.++|++|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 303
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.33 E-value=0.00013 Score=49.09 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
-++++|++|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999887643
No 304
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.33 E-value=0.00018 Score=44.05 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...|++.|.+|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 305
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.32 E-value=0.00013 Score=46.96 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999987654
No 306
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.32 E-value=0.00019 Score=46.67 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...-|++.|++|+||||+++++..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 307
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.32 E-value=0.00014 Score=46.62 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988654
No 308
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.32 E-value=0.00017 Score=42.69 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
+|++.|.+|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 309
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.31 E-value=0.00016 Score=46.57 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988654
No 310
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.31 E-value=0.00015 Score=47.52 Aligned_cols=23 Identities=48% Similarity=0.752 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
-.++++|++|+|||||++.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 357899999999999999998 43
No 311
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.31 E-value=0.00017 Score=44.78 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...|+++|.+|+||||+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998753
No 312
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.31 E-value=0.00021 Score=43.07 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
+...|++.|.+|+||||+++.+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998854
No 313
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.29 E-value=0.00025 Score=46.74 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
....-+.++|++|+|||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4456789999999999999998765
No 314
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.28 E-value=0.00018 Score=45.58 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||+|++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998753
No 315
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.28 E-value=0.00018 Score=44.98 Aligned_cols=23 Identities=26% Similarity=0.588 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...|++.|.+|+||||+++.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999863
No 316
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.28 E-value=0.00017 Score=46.57 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033918 11 LLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~ 30 (109)
++++|++|+|||+|++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999865
No 317
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.27 E-value=0.00018 Score=48.37 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
-++++|++|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999987543
No 318
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.27 E-value=0.0002 Score=44.52 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...+|++.|.+|+||||+++.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998853
No 319
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.27 E-value=8e-05 Score=45.06 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
.++++|++|+|||||++.+.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999764
No 320
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.27 E-value=0.00018 Score=48.74 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999987543
No 321
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.26 E-value=0.00016 Score=43.57 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
..|+++|.+|+||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998754
No 322
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.26 E-value=0.00019 Score=48.32 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999998754
No 323
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.26 E-value=0.00021 Score=44.67 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
+.|++.|.+|+||||+++.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999853
No 324
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.26 E-value=0.00019 Score=48.31 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999998754
No 325
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.25 E-value=0.00016 Score=44.92 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...|+++|.+|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998853
No 326
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.24 E-value=0.00025 Score=43.24 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
...|++.|.+|+||||+++.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999998754
No 327
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.24 E-value=0.0002 Score=48.36 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999987543
No 328
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.24 E-value=0.00021 Score=43.41 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...|++.|.+|+||||+++.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 329
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.23 E-value=0.00021 Score=48.27 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4789999999999999988754
No 330
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.22 E-value=0.00017 Score=42.98 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.-.+++.|++|+|||++++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998764
No 331
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.22 E-value=5.2e-05 Score=49.96 Aligned_cols=24 Identities=38% Similarity=0.510 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
-.++++|++|+|||||++.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 468999999999999999987643
No 332
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.22 E-value=0.00022 Score=46.85 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~ 29 (109)
.-.++++|++|+||||+++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4578899999999999999976
No 333
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.22 E-value=0.00024 Score=44.02 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
-++++|++|+|||||++.+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999873
No 334
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.22 E-value=0.00021 Score=46.68 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999988654
No 335
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.21 E-value=0.00026 Score=42.90 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...|++.|.+|+||||+++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998853
No 336
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.20 E-value=0.00031 Score=44.43 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...|.++|++|+||||+++.+.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999865
No 337
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.20 E-value=0.00024 Score=47.91 Aligned_cols=23 Identities=35% Similarity=0.297 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
-+.++|++|+|||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999887543
No 338
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.20 E-value=0.00035 Score=42.70 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...|++.|.+|+||||+++.+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 339
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.20 E-value=0.00026 Score=45.22 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
-++++|++|+||||+++.+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999853
No 340
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.20 E-value=0.00044 Score=41.78 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
....|+++|.+|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999998753
No 341
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.19 E-value=0.00022 Score=45.45 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.....|+++|.+|+||||+++.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999864
No 342
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.19 E-value=0.00039 Score=45.41 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=20.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHH
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~ 29 (109)
.....|.++|++|+|||||++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 446789999999999999998864
No 343
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.19 E-value=0.00029 Score=47.42 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=21.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHH
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~ 29 (109)
....||+++|.+++|||||++++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 357899999999999999999963
No 344
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.19 E-value=0.00028 Score=42.63 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
.|++.|.+|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 345
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.18 E-value=0.00029 Score=42.71 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
-|++.|.+|+||||+++++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 346
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.18 E-value=0.00019 Score=42.35 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998753
No 347
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.18 E-value=0.00044 Score=45.85 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...+-+.++|++|+||||+++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998753
No 348
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.18 E-value=0.00031 Score=43.62 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.-.+++.|++|+|||++++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998764
No 349
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.17 E-value=0.00031 Score=48.61 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=22.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
....+|+++|.+|+||||+.+++...
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999998654
No 350
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.17 E-value=0.00026 Score=46.84 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
-.++++|++|+|||||++.+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999999865
No 351
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.17 E-value=0.00028 Score=45.40 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||+|++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999998753
No 352
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.17 E-value=0.00016 Score=47.67 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
.++++|++|+|||||++.+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 689999999999999998754
No 353
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.16 E-value=0.0003 Score=43.20 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...|++.|.+|+||||+++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 354
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.16 E-value=0.00027 Score=45.21 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
..|++.|.+|+||||+++.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 355
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.16 E-value=0.00029 Score=41.84 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
..|++.|.+|+||||+++.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998854
No 356
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.16 E-value=0.00025 Score=48.18 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
.++++|++|+|||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 578999999999999998864
No 357
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.15 E-value=0.0003 Score=46.21 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.--++++|++|+||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999999764
No 358
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.14 E-value=0.00017 Score=48.27 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
-++++|++|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4789999999999999988754
No 359
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.14 E-value=0.00033 Score=44.64 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~ 29 (109)
...|+++|++|+||||+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999986
No 360
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.14 E-value=0.00031 Score=44.54 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.-.+++.|++|+|||++++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34699999999999999999864
No 361
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.13 E-value=0.00043 Score=42.51 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...-+.++|++|+||||+++.+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998764
No 362
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.13 E-value=0.00042 Score=45.44 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...-|.++|++|+|||||++.+.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998865
No 363
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.13 E-value=0.00032 Score=46.62 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
..--++++|++|+||||+++.+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999764
No 364
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.13 E-value=0.0003 Score=47.20 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
.++++|++|+||||+++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998864
No 365
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.12 E-value=0.00039 Score=43.64 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...|+++|.+|+||||+++.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998853
No 366
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.12 E-value=0.0001 Score=45.31 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
-|++.|.+|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999863
No 367
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.11 E-value=0.00023 Score=42.68 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=16.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...|++.|.+|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
No 368
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.11 E-value=0.00035 Score=43.00 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
-++++|++|+|||+|+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999976
No 369
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.10 E-value=0.0004 Score=41.96 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
..+.++|.+|+||||++.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999864
No 370
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.10 E-value=0.00032 Score=45.49 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
-++++|++|+|||||++.+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999998764
No 371
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.10 E-value=0.00037 Score=43.52 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
-++++|++|+|||+|+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999998863
No 372
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.09 E-value=0.00042 Score=44.02 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
..+.|.+.|.+|+||||+++.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 373
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.08 E-value=0.00041 Score=43.53 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=18.5
Q ss_pred eeE-EEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFK-LLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~k-i~liG~~~vGKtsl~~~~~~ 30 (109)
..| |+++|+||+||+|.+.++..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344 56789999999999998753
No 374
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.07 E-value=0.0005 Score=42.56 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.+.|++.|.+|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999865
No 375
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.06 E-value=0.00048 Score=42.07 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
..+++.|++|+|||+|++.+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998764
No 376
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.06 E-value=0.00046 Score=41.44 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...|++.|.+|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998864
No 377
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.06 E-value=0.00047 Score=44.66 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.-|++.|.+|+||||+++++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 378
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.05 E-value=0.00042 Score=42.71 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 379
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.05 E-value=0.00043 Score=40.36 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
...|++.|++|+|||++++.+-..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999998654
No 380
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.05 E-value=0.00044 Score=42.19 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998864
No 381
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.05 E-value=0.00036 Score=46.84 Aligned_cols=23 Identities=22% Similarity=0.536 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
-.++++|++|+|||||++.+.+-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999998754
No 382
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.00033 Score=48.55 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
=.++++|++|+|||||++.+.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999998754
No 383
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.04 E-value=0.0004 Score=46.83 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
-.++++|++|+||||+++.+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999864
No 384
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.04 E-value=0.00017 Score=48.33 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.++++|++|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999887543
No 385
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.04 E-value=0.00051 Score=40.76 Aligned_cols=21 Identities=43% Similarity=0.523 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
.|++.|.+|+||||+.+.+..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 386
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.02 E-value=0.00029 Score=44.21 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
...-|++.|.+|+||||+++.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3467899999999999999987653
No 387
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.01 E-value=0.00055 Score=45.53 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHH
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~ 29 (109)
.....++++|.+|+||||+++.+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFG 77 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHH
Confidence 345789999999999999999986
No 388
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.01 E-value=0.00053 Score=43.48 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHH
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~ 29 (109)
..+.|++.|++|+||||+++.+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999875
No 389
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.00 E-value=0.00054 Score=43.95 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
...+++.|++|+|||++++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999998643
No 390
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.99 E-value=0.00051 Score=45.95 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
=++.++|++|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999988764
No 391
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.99 E-value=0.00053 Score=42.33 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~ 29 (109)
..-|+++|.+|+||||+++.+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999875
No 392
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.99 E-value=0.00053 Score=43.34 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...+++.|++|+|||++++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999864
No 393
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.99 E-value=0.0005 Score=46.25 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.--++++|++|+||||+++.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34689999999999999999764
No 394
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.98 E-value=0.00039 Score=46.17 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998754
No 395
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.98 E-value=0.00056 Score=44.17 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.-.+++.|++|+|||++++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 396
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.98 E-value=0.00049 Score=44.04 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
-.|+++|.+|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998853
No 397
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.98 E-value=0.00054 Score=41.13 Aligned_cols=21 Identities=24% Similarity=0.195 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
-.+++|++|+||||++..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999753
No 398
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.97 E-value=0.00052 Score=48.06 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.--++++|++|+||||+++.+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34689999999999999999763
No 399
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.95 E-value=0.00078 Score=43.83 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
..-+++.|++|+|||++++.+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45677889999999999999764
No 400
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.95 E-value=0.00069 Score=43.88 Aligned_cols=23 Identities=43% Similarity=0.499 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHH
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~ 29 (109)
..+.|++.|.+|+||||+++.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999986
No 401
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.94 E-value=0.00091 Score=42.07 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...-|++.|.+|+||||+++++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999764
No 402
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.94 E-value=0.00033 Score=50.06 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.++++|++|+|||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999988754
No 403
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.94 E-value=0.00081 Score=43.60 Aligned_cols=22 Identities=27% Similarity=0.626 Sum_probs=19.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~ 29 (109)
...+++.|++|+|||++++.+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999998654
No 404
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.92 E-value=0.00059 Score=46.75 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
-++++|++|+||||+++.+.+-
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998753
No 405
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.91 E-value=0.00062 Score=44.62 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
-.+++.|++|+|||++++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999999764
No 406
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.90 E-value=0.00065 Score=44.28 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
-.+++.|++|+|||++++.+..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999999865
No 407
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.89 E-value=0.00064 Score=45.04 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.-.+++.|++|+|||++++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999865
No 408
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.88 E-value=0.0007 Score=46.65 Aligned_cols=24 Identities=42% Similarity=0.454 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
=++.++|++|+|||||++.+.+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 368999999999999999887653
No 409
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.87 E-value=0.0011 Score=42.37 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.....+++.|++|+|||++++.+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3456799999999999999999865
No 410
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.87 E-value=0.00068 Score=43.63 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
-++++|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999874
No 411
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.87 E-value=0.00051 Score=45.27 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
-++++|..|+|||||++.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46789999999999999998653
No 412
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.85 E-value=0.00078 Score=43.49 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999764
No 413
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.85 E-value=0.00066 Score=47.64 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+||||+++.+.+-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998753
No 414
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.85 E-value=0.00082 Score=47.42 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
=.++++|++|+|||||++.+.+-
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999998764
No 415
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.85 E-value=0.00075 Score=42.17 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
-++++|++|+|||+|+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999888753
No 416
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.84 E-value=0.001 Score=42.16 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHH
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~ 29 (109)
....+++.|.+||||||+++++.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHH
Confidence 45778999999999999999987
No 417
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.83 E-value=0.0014 Score=42.45 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
-.+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999998764
No 418
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.81 E-value=0.0011 Score=41.62 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=21.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 5 YDYLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 5 ~~~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
......|.++|.+|+||||+++.+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998764
No 419
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.80 E-value=0.00085 Score=46.81 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
-++++|++|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998864
No 420
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.79 E-value=0.0011 Score=41.69 Aligned_cols=45 Identities=11% Similarity=0.026 Sum_probs=25.7
Q ss_pred CCCccccccchhhhhcCCcEEEE----ecccchhh---h-------ccC--CCCCCEEEee
Q 033918 64 TAGQERFRTITSSYYRGAHGIIV----GDLNSFLQ---Q-------SFS--SSSTPFCLFL 108 (109)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~~~iv~----~~~~s~~~---~-------~~~--~~~~P~i~v~ 108 (109)
.+||+.++.+|++||.++|++|| +|++.++. + ... ...+|++++.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlA 169 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLS 169 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEE
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEe
Confidence 45889999999999999999999 55543322 1 121 2578988874
No 421
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.79 E-value=0.0009 Score=44.50 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.+++.|++|+|||++++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998753
No 422
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.78 E-value=0.00085 Score=45.81 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
..-|+++|.+|+||||+++++..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999864
No 423
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.77 E-value=0.00076 Score=42.14 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=18.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~ 29 (109)
.-.+++.|++|+|||+++..+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHH
Confidence 3469999999999998887765
No 424
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.77 E-value=0.00084 Score=47.67 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999987643
No 425
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.76 E-value=0.0012 Score=45.00 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHH
Q 033918 6 DYLFKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 6 ~~~~ki~liG~~~vGKtsl~~~~~ 29 (109)
...+|++++|.+.+||||+++++.
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHHH
Confidence 458999999999999999999964
No 426
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.76 E-value=0.00096 Score=44.00 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
-.+++.|++|+|||++++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 56999999999999999998753
No 427
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.75 E-value=0.00098 Score=45.10 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.-.++++|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999998864
No 428
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.75 E-value=0.0011 Score=43.61 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...+++.|++|+|||++++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35699999999999999999864
No 429
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.75 E-value=0.00099 Score=47.32 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998653
No 430
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.75 E-value=0.0011 Score=43.46 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
-+++.|++|+|||+|++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999998754
No 431
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.74 E-value=0.0013 Score=43.65 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...|+++|++|+|||++...+..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 432
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.73 E-value=0.00092 Score=46.29 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.-+++++|++|+|||++++.+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999998753
No 433
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.72 E-value=0.00044 Score=40.25 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...|++.|++|+|||++++.+..
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCcEEEECCCCccHHHHHHHHHH
Confidence 35699999999999999998654
No 434
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.71 E-value=0.00092 Score=44.31 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.-.+++.|++|+|||++++.+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999864
No 435
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.71 E-value=0.00087 Score=44.26 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033918 11 LLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~ 30 (109)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998865
No 436
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.71 E-value=0.0011 Score=43.92 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
-.+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 437
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.0011 Score=45.56 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
--+++.|+||+|||++++.+.+
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999864
No 438
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.0012 Score=45.45 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.-.|++.|+||+|||++++.+.+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 439
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.68 E-value=0.0011 Score=46.85 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
-+.++|++|+|||||++.+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999998764
No 440
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.67 E-value=0.0011 Score=43.50 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
..+++.|++|+|||++++.+..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4699999999999999999854
No 441
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.67 E-value=0.0012 Score=43.59 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
++++.|++|+|||++++.+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999997653
No 442
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.0012 Score=47.30 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.+.++|++|+|||||++.+.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5789999999999999998764
No 443
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.67 E-value=0.0011 Score=43.33 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
-+++.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999998753
No 444
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.67 E-value=0.0013 Score=40.82 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
...|+++|++|+|||+++..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3568999999999999999997654
No 445
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.66 E-value=0.0014 Score=39.91 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
.|.+.|.+|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 446
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.66 E-value=0.0016 Score=39.99 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
...|.+.|.+|+||||+.+.+...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 577999999999999999998654
No 447
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.66 E-value=0.0013 Score=43.28 Aligned_cols=21 Identities=29% Similarity=0.651 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
.+++.|++|+|||++++.+..
T Consensus 60 ~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998764
No 448
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.0013 Score=45.31 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.-.|++.|+||+|||++++.+.+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999864
No 449
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.64 E-value=0.00089 Score=47.66 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.++++|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999987643
No 450
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.64 E-value=0.0018 Score=42.85 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=20.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
+..-|+++|++|+|||+|+..+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 344588999999999999999864
No 451
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.64 E-value=0.0012 Score=44.06 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
-+.++|++|+|||+|++.+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998754
No 452
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.64 E-value=0.0013 Score=43.06 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~ 29 (109)
.-.++++|++|+||||++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999999875
No 453
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.63 E-value=0.0014 Score=41.77 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
...+++.|++|+|||++++.+...
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCEEEECCCCCcHHHHHHHHHHh
Confidence 357999999999999999998654
No 454
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.62 E-value=0.0013 Score=43.80 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...+++.|++|+|||++++.+..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998753
No 455
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.62 E-value=0.0013 Score=43.98 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...+++.|++|+|||++++.+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998764
No 456
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.61 E-value=0.0013 Score=43.67 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
-.+++.|++|+|||++++.+..
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 457
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.61 E-value=0.0015 Score=38.38 Aligned_cols=19 Identities=47% Similarity=0.651 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 033918 11 LLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~ 29 (109)
.+++|+.|+|||+++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999864
No 458
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.61 E-value=0.00055 Score=43.58 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
.+++.|++|+|||++++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999999864
No 459
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.59 E-value=0.0016 Score=45.89 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.+.++|++|+|||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987653
No 460
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.58 E-value=0.0011 Score=47.25 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
=.++++|++|+|||||++.+.+
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3689999999999999998764
No 461
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.58 E-value=0.0015 Score=46.76 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.+.++|++|+|||||++.+.+-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5899999999999999998754
No 462
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.58 E-value=0.0015 Score=43.57 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
..+++.|++|+|||++++.+..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 4599999999999999999864
No 463
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.58 E-value=0.0024 Score=44.82 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=19.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHH
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~ 29 (109)
....|+++|.+||||||+++++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999987
No 464
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.57 E-value=0.0015 Score=43.67 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.-|++.|++|+|||||+..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999999864
No 465
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.0016 Score=44.49 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.-.|++.|+||+|||.+++.+.+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHH
Confidence 35699999999999999999864
No 466
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.56 E-value=0.0017 Score=42.73 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~ 29 (109)
.--++++|++|+||||++..+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 3468899999999999999875
No 467
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.56 E-value=0.0014 Score=46.25 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.+.++|++|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999987643
No 468
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.56 E-value=0.0017 Score=43.38 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
...+++.|++|+|||++++.+..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 469
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.56 E-value=0.0015 Score=46.09 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
.++++|++|+|||++++.+..
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998754
No 470
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.55 E-value=0.0018 Score=46.39 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.++++|++|+|||||++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999987643
No 471
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.54 E-value=0.0018 Score=43.19 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
-|+++|+.|+|||+|...+..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 472
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.53 E-value=0.002 Score=42.29 Aligned_cols=23 Identities=48% Similarity=0.624 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.-.+++.|++|+|||.|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988754
No 473
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.52 E-value=0.0022 Score=39.03 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 033918 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.-+++.|++|+||||++..+....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 468999999999999999998754
No 474
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.52 E-value=0.0019 Score=39.40 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 033918 11 LLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~ 31 (109)
++++|.+++|||+|+.++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999754
No 475
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.51 E-value=0.00093 Score=43.88 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
-.+++.|++|+|||++++.+..
T Consensus 47 ~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3689999999999999999764
No 476
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.51 E-value=0.0027 Score=42.68 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~ 29 (109)
..+++++|.+|+||||+++.+.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHH
Confidence 4679999999999999998764
No 477
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.51 E-value=0.0017 Score=44.60 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
-.+++.|++|+|||+|++.+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998764
No 478
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.50 E-value=0.0021 Score=42.61 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
-|++.|++|+|||+|+..+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999998643
No 479
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.48 E-value=0.0017 Score=45.56 Aligned_cols=19 Identities=37% Similarity=0.665 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 033918 11 LLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~ 29 (109)
++++|++|+|||||++.++
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 480
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.47 E-value=0.00093 Score=47.42 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
.++++|++|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 689999999999999997654
No 481
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.47 E-value=0.0022 Score=44.31 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
-.+++.|++|+|||++++.+..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 3689999999999999999864
No 482
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.47 E-value=0.0016 Score=45.59 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
..+++.|++|+|||++++.+..
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGG
T ss_pred CeeEeecCchHHHHHHHHHHHH
Confidence 4799999999999999999754
No 483
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.46 E-value=0.0025 Score=40.25 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=19.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHH
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~ 29 (109)
-.++|++.|.+|||||+++-.+.
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHH
Confidence 36899999999999999976653
No 484
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.46 E-value=0.0018 Score=44.12 Aligned_cols=20 Identities=35% Similarity=0.313 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 033918 10 KLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~ 29 (109)
-+.++|++|+|||+|+..+.
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 47899999999999999875
No 485
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.45 E-value=0.0075 Score=41.83 Aligned_cols=62 Identities=23% Similarity=0.278 Sum_probs=36.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHH---h---------------CCCC---CcccccceeeEEEEE--EEe-CCeEEEEEEE
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFA---D---------------DSYI---ESYISTIGVDFKIRT--VEQ-DGKTIKLQIW 62 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~---~---------------~~~~---~~~~~~~~~~~~~~~--~~~-~~~~~~~~i~ 62 (109)
...=|.++|..++|||+|++.++ . ..|. ....-|.|+-..... ... ++....+.+.
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 34556699999999999999554 1 2221 112234443222111 112 4556789999
Q ss_pred eCCCcc
Q 033918 63 DTAGQE 68 (109)
Q Consensus 63 D~~g~~ 68 (109)
||-|..
T Consensus 146 DTEG~~ 151 (457)
T 4ido_A 146 DTQGTF 151 (457)
T ss_dssp EECCBT
T ss_pred eccCCC
Confidence 999854
No 486
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.45 E-value=0.0021 Score=44.79 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
-.++++|++|+|||++++.+.+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999865
No 487
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.44 E-value=0.0023 Score=39.97 Aligned_cols=20 Identities=35% Similarity=0.703 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 033918 10 KLLLIGDSGVGKSCLLLRFA 29 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~ 29 (109)
=+++.|++|+|||+|+.++.
T Consensus 32 l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37889999999999998875
No 488
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.44 E-value=0.0021 Score=43.26 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~~ 31 (109)
...+++.|++|+|||++++.+...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998643
No 489
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.44 E-value=0.0012 Score=42.95 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
..+++.|++|+|||++++.+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999854
No 490
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.0021 Score=46.07 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 033918 11 LLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 11 i~liG~~~vGKtsl~~~~~~~~ 32 (109)
+.++|++|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7899999999999999987643
No 491
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.43 E-value=0.0021 Score=45.07 Aligned_cols=21 Identities=43% Similarity=0.646 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
.++++|++|+|||+|++.+.+
T Consensus 66 GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999864
No 492
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.42 E-value=0.0013 Score=46.82 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033918 10 KLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~ 30 (109)
.++++|++|+|||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999998754
No 493
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.0023 Score=44.10 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.--|++.|+||+|||++++.+.+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHH
Confidence 45799999999999999999864
No 494
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.40 E-value=0.0026 Score=47.91 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADDS 32 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~~ 32 (109)
.+.++|++|+|||||++.+.++.
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998764
No 495
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.40 E-value=0.0029 Score=40.02 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
..+++.++|.+|+||||++.++..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 457899999999999999998753
No 496
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.39 E-value=0.0028 Score=41.14 Aligned_cols=22 Identities=41% Similarity=0.678 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 033918 10 KLLLIGDSGVGKSCLLLRFADD 31 (109)
Q Consensus 10 ki~liG~~~vGKtsl~~~~~~~ 31 (109)
.+++.|++|+|||++++.+...
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999988643
No 497
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.39 E-value=0.002 Score=44.51 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033918 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 8 ~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
.-++++.|++|+|||++++.+..
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998753
No 498
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.39 E-value=0.0011 Score=43.64 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
-.+++.|++|+|||++++.+..
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 3599999999999999999864
No 499
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.38 E-value=0.0017 Score=46.03 Aligned_cols=24 Identities=38% Similarity=0.463 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033918 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 7 ~~~ki~liG~~~vGKtsl~~~~~~ 30 (109)
....++++|.+|+||||+++.+.+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 346799999999999999999764
No 500
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.37 E-value=0.0029 Score=39.79 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033918 9 FKLLLIGDSGVGKSCLLLRFAD 30 (109)
Q Consensus 9 ~ki~liG~~~vGKtsl~~~~~~ 30 (109)
..|++-|.+|+||||+++.+..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999999864
Done!