BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033920
MAWRQIFNNAGANSMVAVSGFSRFFTSKASNQYIVKVGIPEFLNGIGKGVETHSAKLESE
IGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLWRPRAAPAKA

High Scoring Gene Products

Symbol, full name Information P value
AT3G05810 protein from Arabidopsis thaliana 2.0e-24

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033920
        (109 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2074424 - symbol:AT3G05810 "AT3G05810" species...   279  2.0e-24   1


>TAIR|locus:2074424 [details] [associations]
            symbol:AT3G05810 "AT3G05810" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0006333 "chromatin assembly or disassembly"
            evidence=RCA] EMBL:CP002686 GenomeReviews:BA000014_GR
            InterPro:IPR019083 Pfam:PF09597 EMBL:AY086814 EMBL:BT006099
            EMBL:AK118369 IPI:IPI00531271 RefSeq:NP_566261.1 UniGene:At.40614
            ProteinModelPortal:Q8LC40 SMR:Q8LC40 STRING:Q8LC40 PaxDb:Q8LC40
            PRIDE:Q8LC40 EnsemblPlants:AT3G05810.1 GeneID:819750
            KEGG:ath:AT3G05810 TAIR:At3g05810 eggNOG:NOG285453
            HOGENOM:HOG000006068 InParanoid:Q8LC40 OMA:RGAETHI PhylomeDB:Q8LC40
            ProtClustDB:CLSN2688096 ArrayExpress:Q8LC40 Genevestigator:Q8LC40
            Uniprot:Q8LC40
        Length = 112

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 60/113 (53%), Positives = 70/113 (61%)

Query:     1 MAWRQIFNNAGANSMVAVS----GFSRFFTSKASNQYIVKVGIPEFLNGIGKGVETHSAK 56
             MAW ++  +A A    A S    G  RF +SK +  Y VKVGIPEFL GIG+G ETH AK
Sbjct:     1 MAWTRLIQSARAALGTAQSCSTLGLPRFHSSKPAT-YFVKVGIPEFLGGIGRGAETHIAK 59

Query:    57 LESEIGDFQXXXXXXXXXXXXXGIPCKHRKLILKHTHKYRLGLWRPRAAPAKA 109
             +E+EIGD               GIPCKHRKLILK+  KYRLGLW+PRA   KA
Sbjct:    60 IETEIGDLHKLLVTRTLRLKKLGIPCKHRKLILKYGQKYRLGLWKPRADAIKA 112


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      109        96   0.00091  102 3  11 22  0.49    29
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  563 (60 KB)
  Total size of DFA:  114 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.09u 0.10s 9.19t   Elapsed:  00:00:00
  Total cpu time:  9.09u 0.10s 9.19t   Elapsed:  00:00:00
  Start:  Fri May 10 08:29:27 2013   End:  Fri May 10 08:29:27 2013

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