BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033920
         (109 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3G1J|A Chain A, Structure From The Mobile Metagenome Of Vibrio Cholerae.
          Integron Cassette Protein Vch_cass4.
 pdb|3G1J|B Chain B, Structure From The Mobile Metagenome Of Vibrio Cholerae.
          Integron Cassette Protein Vch_cass4
          Length = 93

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 11 GANSMVAVSGFSRFFTSKASNQYIVKVGIPEFLNGIGKGVETHSAKLES 59
          G+N +   SG S FF    S + I     PEF   I   ++++  KL+ 
Sbjct: 44 GSNFVPYESGLSLFFDKNGSERQIXLCVRPEFQXEIAHHLDSYFCKLDD 92


>pdb|2D42|A Chain A, Crystal Structure Analysis Of A Non-Toxic Crystal
          Protein From Bacillus Thuringiensis
 pdb|2D42|B Chain B, Crystal Structure Analysis Of A Non-Toxic Crystal
          Protein From Bacillus Thuringiensis
          Length = 249

 Score = 26.9 bits (58), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 4  RQIFNNAGANSMVAVSGFSRFFTSKASNQ 32
          R+I  N  +NS+  V  FS  +TS+ S+Q
Sbjct: 60 RRIITNTTSNSLEGVFSFSNAYTSRTSSQ 88


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,794,050
Number of Sequences: 62578
Number of extensions: 81861
Number of successful extensions: 101
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 2
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)