Query 033920
Match_columns 109
No_of_seqs 94 out of 96
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 12:58:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033920.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033920hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b0x_A Protein (EPHA4 receptor 98.5 1E-07 3.6E-12 64.2 5.0 64 33-98 23-88 (94)
2 2qkq_A Ephrin type-B receptor 98.5 1.3E-07 4.6E-12 62.0 4.3 65 33-99 12-78 (83)
3 3k1r_B Usher syndrome type-1G 98.4 2.3E-07 7.7E-12 60.7 4.6 65 38-104 4-68 (74)
4 1ow5_A Serine/threonine-protei 98.4 1.7E-07 5.9E-12 64.5 4.0 62 37-100 16-79 (85)
5 2e8n_A Ephrin type-A receptor 98.4 4.7E-07 1.6E-11 60.2 5.8 64 33-98 9-74 (88)
6 3h8m_A Ephrin type-A receptor 98.4 4.5E-07 1.5E-11 61.4 5.4 63 33-97 22-86 (90)
7 1b4f_A EPHB2; SAM domain, EPH 98.4 5.2E-07 1.8E-11 58.9 5.5 65 33-99 8-74 (82)
8 1x40_A ARAP2; ASAP-related pro 98.4 3.8E-07 1.3E-11 61.3 4.5 62 36-99 15-78 (91)
9 2eao_A Ephrin type-B receptor 98.4 9.9E-07 3.4E-11 59.8 6.4 68 33-102 19-88 (99)
10 3bs5_B Connector enhancer of k 98.3 5.9E-07 2E-11 57.9 4.6 66 36-101 9-75 (80)
11 2kso_A Ephrin type-A receptor 98.3 4.7E-07 1.6E-11 60.0 4.1 64 33-98 13-78 (82)
12 1ucv_A Ephrin type-A receptor 98.3 7.6E-07 2.6E-11 58.4 5.0 65 33-99 4-70 (81)
13 3kka_C Ephrin type-A receptor 98.3 7.2E-07 2.5E-11 59.9 4.6 60 36-97 21-82 (86)
14 2f3n_A SH3 and multiple ankyri 98.3 4.9E-07 1.7E-11 58.4 3.4 60 37-98 8-68 (76)
15 3bq7_A Diacylglycerol kinase d 98.3 8.5E-07 2.9E-11 57.9 4.1 61 36-98 12-73 (81)
16 2gle_A Neurabin-1; SAM domain, 98.3 1.1E-06 3.9E-11 55.8 4.6 60 36-97 9-69 (74)
17 2k4p_A Phosphatidylinositol-3, 98.2 1.1E-06 3.6E-11 59.3 4.3 63 32-96 22-86 (86)
18 2lmr_A ODIN, ankyrin repeat an 98.2 7.4E-07 2.5E-11 61.7 3.5 62 35-98 28-93 (101)
19 1v38_A SAM-domain protein sams 98.2 1.5E-06 5.1E-11 56.9 4.4 61 36-98 12-74 (78)
20 2ean_A Connector enhancer of k 98.2 2E-06 6.9E-11 56.0 4.8 67 36-102 13-80 (83)
21 2kg5_A ARF-GAP, RHO-GAP domain 98.2 1.5E-06 5.1E-11 59.8 4.1 62 36-99 26-89 (100)
22 3hil_A Ephrin type-A receptor 98.2 1.8E-06 6.1E-11 57.5 4.4 59 33-93 20-80 (82)
23 2eam_A Putative 47 kDa protein 98.2 1.3E-06 4.6E-11 56.8 3.6 65 32-98 8-76 (80)
24 2dl0_A SAM and SH3 domain-cont 98.1 1.9E-06 6.6E-11 58.9 3.0 61 36-98 23-85 (97)
25 3bs7_A Protein aveugle; sterIl 98.0 6.3E-06 2.2E-10 52.8 4.5 61 36-97 8-70 (78)
26 1v85_A Similar to ring finger 98.0 6.9E-06 2.4E-10 54.8 4.7 61 36-98 22-87 (91)
27 2y9t_A Tumor protein 63; apopt 98.0 6.5E-06 2.2E-10 55.5 4.3 66 32-99 2-68 (82)
28 2ke7_A Ankyrin repeat and ster 98.0 3.7E-06 1.3E-10 57.5 2.8 60 36-97 22-85 (103)
29 2d3d_A VTS1 protein; RNA bindi 98.0 9.9E-06 3.4E-10 55.7 4.8 58 36-97 18-76 (88)
30 3sei_A Caskin-1; SAM domain, p 97.9 1.1E-05 3.7E-10 58.3 4.8 59 37-97 80-140 (149)
31 3bs5_A Protein aveugle; sterIl 97.9 1.2E-05 4E-10 55.5 4.5 62 36-98 28-91 (106)
32 2e8o_A SAM domain and HD domai 97.9 5E-06 1.7E-10 56.6 2.5 61 36-98 32-95 (103)
33 3sei_A Caskin-1; SAM domain, p 97.8 1.4E-05 4.8E-10 57.7 3.9 69 33-103 7-76 (149)
34 2d8c_A Phosphatidylcholine:cer 97.8 2.9E-05 1E-09 53.2 4.8 62 36-102 22-87 (97)
35 2es6_A VTS1P; SAM domain, prot 97.7 2.6E-05 8.9E-10 55.0 4.1 58 36-97 31-89 (101)
36 1kw4_A Polyhomeotic; SAM domai 97.7 2.5E-05 8.5E-10 52.5 3.5 62 36-98 19-81 (89)
37 2b6g_A VTS1P; alpha-helix, pen 97.7 5E-05 1.7E-09 54.7 5.0 59 35-97 48-107 (119)
38 2y9u_A Tumor protein 63; apopt 97.7 6.6E-05 2.3E-09 49.0 4.8 61 36-98 4-65 (69)
39 2kiv_A Ankyrin repeat and ster 97.5 6E-05 2E-09 53.9 3.1 65 32-98 10-78 (148)
40 1wwv_A Connector enhancer of k 97.4 7.2E-05 2.5E-09 50.6 2.7 65 36-103 16-82 (91)
41 1oxj_A RNA-binding protein sma 97.4 0.00017 5.7E-09 55.0 4.6 58 37-98 8-65 (173)
42 2kiv_A Ankyrin repeat and ster 97.3 0.00025 8.4E-09 50.7 4.4 58 34-93 86-146 (148)
43 1pk1_B Sex COMB on midleg CG94 96.7 0.0018 6.1E-08 43.5 4.4 63 35-98 18-82 (89)
44 3tad_C Liprin-beta-1; protein 95.3 0.01 3.5E-07 47.1 3.1 68 36-105 20-89 (265)
45 1dxs_A P53-like transcription 94.8 0.036 1.2E-06 37.7 4.1 65 32-98 2-67 (80)
46 2dkz_A Hypothetical protein LO 94.5 0.027 9.1E-07 38.6 3.1 61 36-103 20-82 (84)
47 3tad_C Liprin-beta-1; protein 93.8 0.1 3.4E-06 41.5 5.6 65 37-103 93-158 (265)
48 3tac_B Liprin-alpha-2; transfe 85.2 0.83 2.8E-05 37.7 4.1 59 36-96 41-103 (334)
49 3fxd_A Protein ICMQ; helix bun 77.6 0.85 2.9E-05 29.2 1.2 25 38-62 27-51 (57)
50 3szr_A Interferon-induced GTP- 68.3 14 0.00047 31.1 6.8 73 22-97 275-359 (608)
51 2i2o_A EIF4G-like protein; pro 68.1 6.7 0.00023 29.4 4.4 59 39-104 153-212 (224)
52 1kft_A UVRC, excinuclease ABC 65.1 5.4 0.00019 24.7 2.9 46 44-92 30-76 (78)
53 1uqv_A STE50 protein; SAM, ste 62.0 6.2 0.00021 26.8 2.9 38 58-97 39-78 (85)
54 1z00_A DNA excision repair pro 60.6 15 0.00052 23.0 4.5 40 53-92 31-71 (89)
55 3idw_A Actin cytoskeleton-regu 60.2 10 0.00035 25.0 3.6 45 48-92 17-61 (72)
56 1x2i_A HEF helicase/nuclease; 59.0 16 0.00056 21.5 4.2 40 53-92 26-66 (75)
57 2a1j_B DNA excision repair pro 57.4 19 0.00065 22.8 4.6 40 53-92 44-84 (91)
58 4b21_A Probable DNA-3-methylad 53.4 15 0.00051 27.6 4.1 37 64-100 98-134 (232)
59 4aj5_A SKA1, spindle and kinet 51.1 9.3 0.00032 26.3 2.4 39 36-78 32-73 (91)
60 3j20_T 30S ribosomal protein S 49.6 8.5 0.00029 27.9 2.1 25 63-88 12-36 (132)
61 1mpg_A ALKA, 3-methyladenine D 47.2 14 0.00048 28.1 3.1 37 64-100 158-194 (282)
62 3s6i_A DNA-3-methyladenine gly 46.8 15 0.00053 27.4 3.2 38 63-100 86-123 (228)
63 2ksc_A Cyanoglobin; hemeprotei 46.7 18 0.00061 23.9 3.2 38 62-99 81-120 (123)
64 3u5c_P 40S ribosomal protein S 45.7 11 0.00038 27.6 2.2 23 64-87 22-44 (142)
65 2yg9_A DNA-3-methyladenine gly 44.0 22 0.00074 26.4 3.6 38 63-100 94-131 (225)
66 4ets_A Ferric uptake regulatio 43.6 18 0.00063 25.4 3.0 29 66-94 15-44 (162)
67 3tac_B Liprin-alpha-2; transfe 42.0 29 0.001 28.5 4.4 60 41-102 168-229 (334)
68 2h56_A DNA-3-methyladenine gly 41.2 24 0.00083 26.3 3.5 37 63-99 86-122 (233)
69 3eyy_A Putative iron uptake re 40.8 16 0.00056 25.0 2.4 22 73-94 8-30 (145)
70 1irz_A ARR10-B; helix-turn-hel 36.8 34 0.0012 21.7 3.2 28 72-99 33-60 (64)
71 3hzj_A Rabgap1L, RAB GTPase-ac 36.0 13 0.00045 28.0 1.3 27 62-88 13-42 (310)
72 2a1j_A DNA repair endonuclease 35.2 37 0.0013 20.5 3.1 38 54-92 17-55 (63)
73 1mzb_A Ferric uptake regulatio 33.8 23 0.00078 23.8 2.1 23 72-94 6-29 (136)
74 1v54_E Cytochrome C oxidase po 33.7 26 0.00087 24.8 2.4 21 64-84 82-102 (109)
75 2wul_A Glutaredoxin related pr 33.1 31 0.0011 23.5 2.8 27 46-82 87-113 (118)
76 1dlw_A Hemoglobin; oxygen stor 31.2 47 0.0016 21.4 3.3 38 62-99 76-113 (116)
77 1t07_A Hypothetical UPF0269 pr 30.0 40 0.0014 23.2 2.8 50 45-99 27-79 (94)
78 2xig_A Ferric uptake regulatio 30.0 40 0.0014 23.1 2.9 22 73-94 16-38 (150)
79 2y69_E Cytochrome C oxidase su 29.9 31 0.0011 25.6 2.4 21 64-84 125-145 (152)
80 3i0w_A 8-oxoguanine-DNA-glycos 29.5 46 0.0016 25.6 3.5 38 57-99 158-195 (290)
81 2bgw_A XPF endonuclease; hydro 29.3 86 0.003 22.4 4.7 53 40-92 161-214 (219)
82 2doq_D SFI1P; centrin, CDC31P, 28.7 12 0.00039 25.9 -0.1 15 83-97 20-34 (94)
83 3iz6_R 40S ribosomal protein S 28.6 12 0.00041 27.8 0.0 25 63-88 30-54 (154)
84 2fe3_A Peroxide operon regulat 28.5 37 0.0013 23.0 2.5 22 73-94 11-33 (145)
85 2w57_A Ferric uptake regulatio 28.4 31 0.0011 23.7 2.1 22 73-94 6-28 (150)
86 2jhn_A ALKA, 3-methyladenine D 28.1 42 0.0014 25.7 3.0 34 57-94 161-194 (295)
87 1z00_B DNA repair endonuclease 27.9 64 0.0022 20.9 3.5 54 38-92 15-69 (84)
88 2xzm_S RPS15E; ribosome, trans 27.1 33 0.0011 25.1 2.1 55 37-97 16-70 (144)
89 1m3w_A H10H24; four-helix bund 25.6 40 0.0014 18.9 1.8 15 64-78 17-31 (32)
90 3im1_A Protein SNU246, PRE-mRN 25.6 41 0.0014 25.8 2.6 34 62-95 179-213 (328)
91 3qye_A TBC1 domain family memb 25.1 60 0.0021 24.5 3.4 26 64-89 33-69 (331)
92 1xs8_A UPF0269 protein YGGX; h 24.4 71 0.0024 21.8 3.3 36 64-99 39-77 (91)
93 3aq9_A Group 1 truncated hemog 24.1 74 0.0025 20.6 3.3 36 63-98 82-117 (121)
94 2fu4_A Ferric uptake regulatio 23.8 47 0.0016 19.8 2.1 22 73-94 6-28 (83)
95 1hji_B NUN-protein; bacterioph 23.7 37 0.0013 18.3 1.4 17 78-94 2-18 (26)
96 4glx_A DNA ligase; inhibitor, 23.1 89 0.0031 26.9 4.4 57 36-92 505-564 (586)
97 3c1y_A DNA integrity scanning 23.0 91 0.0031 25.7 4.3 47 42-88 316-363 (377)
98 1dly_A Hemoglobin; oxygen stor 22.6 82 0.0028 22.4 3.5 52 47-100 104-159 (164)
99 1y88_A Hypothetical protein AF 21.8 79 0.0027 23.6 3.4 31 66-96 166-196 (199)
100 2gkm_A TRHBN, hemoglobin-like 21.8 80 0.0027 21.1 3.2 55 47-102 74-129 (136)
101 2rp5_A Putative uncharacterize 21.3 1.3E+02 0.0043 21.9 4.2 58 37-96 65-127 (136)
102 2bkm_A Truncated hemoglobin fr 20.6 1.3E+02 0.0043 19.7 3.9 39 62-100 83-121 (128)
103 3c65_A Uvrabc system protein C 20.3 22 0.00074 27.3 0.0 47 43-92 178-224 (226)
104 1hu3_A EIF4GII; heat repeat, t 20.2 90 0.0031 23.2 3.5 60 39-104 186-245 (260)
105 2bmm_A Thermostable hemoglobin 20.0 1.1E+02 0.0038 19.8 3.5 38 62-99 81-118 (123)
No 1
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=98.53 E-value=1e-07 Score=64.19 Aligned_cols=64 Identities=16% Similarity=0.322 Sum_probs=56.4
Q ss_pred ccccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhc
Q 033920 33 YIVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLG 98 (109)
Q Consensus 33 ~~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~G 98 (109)
+...-+|.+||..|| +++|.+.|... +.+++.|..++...|+++|| .+-+||.||+-.++.|..
T Consensus 23 ~~~~~~V~~WL~~lg--L~~Y~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~L~~~ 88 (94)
T 1b0x_A 23 FSAVVSVGDWLQAIK--MDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRTQ 88 (94)
T ss_dssp CCSSCCHHHHHHHTT--CGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHCC--cHHHHHHHHHcCCCCHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHHHHH
Confidence 445679999999998 99999999874 45899999999999999999 569999999999888754
No 2
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=98.47 E-value=1.3e-07 Score=62.01 Aligned_cols=65 Identities=18% Similarity=0.286 Sum_probs=54.1
Q ss_pred ccccCCHHHHHhhhccchhHHHHhhhhhh-hhHHHHhhhchHHHHhcCCC-chhhhHHhhhhHhhhhcc
Q 033920 33 YIVKVGIPEFLNGIGKGVETHSAKLESEI-GDFQRLLVTRTLKLKKLGIP-CKHRKLILKHTHKYRLGL 99 (109)
Q Consensus 33 ~~~~~dV~tFL~~IGRg~~eha~Kfes~~-gdw~~Lf~~~S~~LKelGIp-~r~RKyIL~~~ekyR~Gl 99 (109)
+....+|.+||..|| +++|.+.|...= -|++.|..++...||++||+ .-+||.||+-.++.|.-.
T Consensus 12 ~~~~~~V~~WL~~lg--L~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l~~~~ 78 (83)
T 2qkq_A 12 YSAFGSVGEWLRAIK--MGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMKSQA 78 (83)
T ss_dssp --CCSSHHHHHHHTT--CGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTC----
T ss_pred CCccchHHHHHHHCC--CHHHHHHHHHcCCCcHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHh
Confidence 445669999999998 999999998644 58999999999999999995 899999999999888655
No 3
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=98.43 E-value=2.3e-07 Score=60.68 Aligned_cols=65 Identities=28% Similarity=0.441 Sum_probs=58.2
Q ss_pred CHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhcccccCC
Q 033920 38 GIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLWRPRA 104 (109)
Q Consensus 38 dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~Gl~~P~g 104 (109)
+|.+||..|| +++|.+.|+.+-=|++.|..++...||++||++-+||.||+..+..|.-+=.|+.
T Consensus 4 ~v~~wL~~lg--L~~Y~~~F~~~~id~e~l~~lt~~DL~~lGI~~G~RkkIl~ai~~~~~~~~~p~~ 68 (74)
T 3k1r_B 4 PLETFLASLH--MEDFAALLRQEKIDLEALMLCSDLDLRSISVPLGPREKILGAVRRRRQAMERPPA 68 (74)
T ss_dssp HHHHHHHTTT--CGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred hHHHHHHHCC--CHHHHHHHHHcCcCHHHHhHCCHHHHHHcCCCcchHHHHHHHHHHHHHHhcCCCC
Confidence 5899999997 9999999976545899999999999999999999999999999998887766653
No 4
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A
Probab=98.43 E-value=1.7e-07 Score=64.54 Aligned_cols=62 Identities=16% Similarity=0.175 Sum_probs=53.6
Q ss_pred CCHHHHHhhhccchhHHHHhh-hhhhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhccc
Q 033920 37 VGIPEFLNGIGKGVETHSAKL-ESEIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLGLW 100 (109)
Q Consensus 37 ~dV~tFL~~IGRg~~eha~Kf-es~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~Gl~ 100 (109)
+.|.+||..|| |.+|++.| +|.|-..+.|..++...|||+|| .+-+|..||+.+...|+..-
T Consensus 16 ~~v~~wL~si~--c~qY~~~F~eN~I~g~d~L~eLd~e~LkElGI~kvGdRirIlk~vk~Lr~~~~ 79 (85)
T 1ow5_A 16 PFVQLFLEEIG--CTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQRDKR 79 (85)
T ss_dssp CHHHHHHHHHS--CTHHHHHHHHHTCCCHHHHHHCCHHHHHHHTCCCHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHcC--ChhHHHHHHHcCCCcHHHHHHcCHHHHHHhCCCcccHHHHHHHHHHHHHHHHh
Confidence 48999999996 99999999 56677789999999999999999 99999999999988887553
No 5
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=4.7e-07 Score=60.18 Aligned_cols=64 Identities=13% Similarity=0.175 Sum_probs=55.9
Q ss_pred ccccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCCC-chhhhHHhhhhHhhhhc
Q 033920 33 YIVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGIP-CKHRKLILKHTHKYRLG 98 (109)
Q Consensus 33 ~~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGIp-~r~RKyIL~~~ekyR~G 98 (109)
|...-+|.+||..|| +++|.+.|..+ +.+++.|..++...||++||+ +-+||.||+-.++.|.-
T Consensus 9 ~~~~~~V~~WL~~lg--L~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhRkkIl~ai~~l~~~ 74 (88)
T 2e8n_A 9 GVPFRTVSEWLESIK--MQQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLLGLKDQ 74 (88)
T ss_dssp CCSCSSHHHHHHHTT--CGGGHHHHHHHTCSSHHHHTTSCTTHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHCC--CHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHHHHh
Confidence 444569999999998 99999999764 456999999999999999995 69999999999998854
No 6
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=98.39 E-value=4.5e-07 Score=61.40 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=55.7
Q ss_pred ccccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhh
Q 033920 33 YIVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRL 97 (109)
Q Consensus 33 ~~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~ 97 (109)
+....+|.+||..|| +++|.+.|... +.+++.|..++...|+++|| ++-+||.||+..++.|.
T Consensus 22 ~~~~~~V~~WL~~lg--L~qY~~~F~~~g~d~~e~l~~lt~~DL~~lGIt~~GHRkkIL~ai~~Lr~ 86 (90)
T 3h8m_A 22 FTTFCSVGEWLQAIK--MERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRA 86 (90)
T ss_dssp CCCCSSHHHHHHHTT--CGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHCC--hHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 444569999999998 99999999764 46799999999999999999 57999999999998875
No 7
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=98.39 E-value=5.2e-07 Score=58.91 Aligned_cols=65 Identities=17% Similarity=0.279 Sum_probs=56.7
Q ss_pred ccccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCCC-chhhhHHhhhhHhhhhcc
Q 033920 33 YIVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGIP-CKHRKLILKHTHKYRLGL 99 (109)
Q Consensus 33 ~~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGIp-~r~RKyIL~~~ekyR~Gl 99 (109)
|...-+|.+||..|| +++|.+.|... +.+++.|..++...||++||+ +-+||.||+-.++.|...
T Consensus 8 ~~~~~~v~~WL~~lg--L~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l~~~~ 74 (82)
T 1b4f_A 8 YTSFNTVDEWLEAIK--MGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRAQM 74 (82)
T ss_dssp CCCCSSHHHHHHHTT--CGGGHHHHHHTTCCSHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHCC--CHHHHHHHHHcCCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 445569999999998 99999999764 458999999999999999995 689999999999888644
No 8
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=98.36 E-value=3.8e-07 Score=61.35 Aligned_cols=62 Identities=26% Similarity=0.365 Sum_probs=55.3
Q ss_pred cCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhcc
Q 033920 36 KVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLGL 99 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~Gl 99 (109)
..+|.+||..|| +++|.+.|... +.+++.|..++...|+++|| .+-+||.||+-.+..|.-.
T Consensus 15 ~~~V~~WL~~lg--L~qY~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GHrkkIl~ai~~L~~~~ 78 (91)
T 1x40_A 15 NVDIKDFLMSIN--LEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIILSKM 78 (91)
T ss_dssp CCBHHHHHHTTT--CGGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHCC--CHHHHHHHHHcCCCcHHHHhhcCHHHHHHCCCCCHhHHHHHHHHHHHHHhhc
Confidence 458999999997 99999999763 45799999999999999999 6999999999999998544
No 9
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=9.9e-07 Score=59.84 Aligned_cols=68 Identities=18% Similarity=0.306 Sum_probs=58.6
Q ss_pred ccccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCCC-chhhhHHhhhhHhhhhccccc
Q 033920 33 YIVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGIP-CKHRKLILKHTHKYRLGLWRP 102 (109)
Q Consensus 33 ~~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGIp-~r~RKyIL~~~ekyR~Gl~~P 102 (109)
|...-+|.+||..|| +++|.+.|... +.+++.|..++...||++||+ +-+||.||+-.++.|.-.-.|
T Consensus 19 ~~~~~~V~~WL~~lg--L~~Y~~~F~~~~~~~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~l~~~~~~~ 88 (99)
T 2eao_A 19 FTAFTTVDDWLSAIK--MVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNSIHSMRVQISQS 88 (99)
T ss_dssp TTSCCBHHHHHHTTT--CGGGHHHHHHHTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSCC
T ss_pred CcchHHHHHHHHHCC--cHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHHHHHhhcc
Confidence 555679999999998 99999999764 456999999999999999995 699999999999999765433
No 10
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=98.33 E-value=5.9e-07 Score=57.90 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=56.3
Q ss_pred cCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhcccc
Q 033920 36 KVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLGLWR 101 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~Gl~~ 101 (109)
.-+|.+||..|+.|+.+|++.|...-=|-+.|+.++...||++|| +.-+|+.||+..++.|.--++
T Consensus 9 ~~~V~~WL~~l~~gl~~Y~~~F~~~~i~G~~Ll~L~~~dL~~lGI~~~ghr~~il~~I~~L~~~~~~ 75 (80)
T 3bs5_B 9 PSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNYG 75 (80)
T ss_dssp HHHHHHHHHTSCGGGGGGHHHHHHHTCCHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHcCCCHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhc
Confidence 458999999996679999999965433568999999999999999 889999999999998875443
No 11
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=98.32 E-value=4.7e-07 Score=59.97 Aligned_cols=64 Identities=13% Similarity=0.188 Sum_probs=53.2
Q ss_pred ccccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhc
Q 033920 33 YIVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLG 98 (109)
Q Consensus 33 ~~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~G 98 (109)
+...-+|.+||..|| +++|.+.|... +.+++.|..++...||++|| .+-+||.||+-.++.|.-
T Consensus 13 ~~~~~~V~~WL~~lg--L~qY~~~F~~~gid~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~Lr~~ 78 (82)
T 2kso_A 13 RGSHMTVSEWLESIK--MQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKDQ 78 (82)
T ss_dssp -----CHHHHHHHTT--CTTHHHHHHHTTCCSHHHHTTCCHHHHHHHHCCCTTHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHCC--CHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHHHHH
Confidence 444569999999998 99999999764 35699999999999999999 569999999999988864
No 12
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=98.32 E-value=7.6e-07 Score=58.36 Aligned_cols=65 Identities=18% Similarity=0.271 Sum_probs=56.4
Q ss_pred ccccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCCC-chhhhHHhhhhHhhhhcc
Q 033920 33 YIVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGIP-CKHRKLILKHTHKYRLGL 99 (109)
Q Consensus 33 ~~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGIp-~r~RKyIL~~~ekyR~Gl 99 (109)
+...-+|.+||..|| +++|.+.|... +.+++.|..++...||++||+ +-+||.||+-.++.|.-.
T Consensus 4 ~~~~~~V~~WL~~lg--L~~Y~~~F~~~~~d~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~l~~~~ 70 (81)
T 1ucv_A 4 GSSGLTVGDWLDSIR--MGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRAQL 70 (81)
T ss_dssp CCCCSBHHHHHHHTT--CGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHCC--CHHHHHHHHHcCCChHHHHHHcCHHHHHhCCCCChhHHHHHHHHHHHHHHHH
Confidence 444569999999998 99999999764 456999999999999999995 699999999999988644
No 13
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=98.30 E-value=7.2e-07 Score=59.92 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=52.3
Q ss_pred cCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhh
Q 033920 36 KVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRL 97 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~ 97 (109)
..+|.+||..|| +++|.+.|... +.+++.|..++-..|+++|| ++-+||.||+..+..|.
T Consensus 21 ~~~V~~WL~~lg--L~qY~~~F~~~g~d~le~l~~lt~~DL~~LGIt~~GHRkkIL~ai~~Lr~ 82 (86)
T 3kka_C 21 FRTVSEWLESIK--MQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKD 82 (86)
T ss_dssp --CHHHHHHHTT--CGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHCC-
T ss_pred hhHHHHHHHhCC--cHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 459999999998 99999999864 46699999999999999999 67999999999988775
No 14
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=98.28 E-value=4.9e-07 Score=58.41 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=50.3
Q ss_pred CCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCC-chhhhHHhhhhHhhhhc
Q 033920 37 VGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIP-CKHRKLILKHTHKYRLG 98 (109)
Q Consensus 37 ~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp-~r~RKyIL~~~ekyR~G 98 (109)
-+|.+||..|| +++|++.|...-=|.+.|+.++...||++||+ .-+|+.||+..+++|..
T Consensus 8 ~~V~~WL~~lg--l~~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~~Ghr~kIl~aI~~l~~~ 68 (76)
T 2f3n_A 8 FDVGDWLESIH--LGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERALRQLDGS 68 (76)
T ss_dssp HHHHHHHHHTT--CGGGHHHHHHTTCCGGGGGGCCHHHHHHTTCCCHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHCC--CHHHHHHHHHcCCCHHHHccCCHHHHHHcCCCChhHHHHHHHHHHHHHHH
Confidence 48999999997 99999999764434559999999999999995 89999999999888754
No 15
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=98.25 E-value=8.5e-07 Score=57.90 Aligned_cols=61 Identities=18% Similarity=0.133 Sum_probs=52.8
Q ss_pred cCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhc
Q 033920 36 KVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLG 98 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~G 98 (109)
.-+|.+||..|| +++|++.|...-=|-..|+.++...||++|| +.-+|+.||+..+++|.-
T Consensus 12 ~~~V~~WL~~lg--l~~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~~ghr~kIl~aI~~L~~~ 73 (81)
T 3bq7_A 12 TEEVAAWLEHLS--LCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCGIKELSRS 73 (81)
T ss_dssp HHHHHHHHHHTT--CGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHCC--CHHHHHHHHHcCCCHHHHCcCCHHHHhHcCCCCHHHHHHHHHHHHHHHHH
Confidence 468999999997 9999999976543456699999999999999 889999999999988764
No 16
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=98.25 E-value=1.1e-06 Score=55.80 Aligned_cols=60 Identities=20% Similarity=0.332 Sum_probs=52.0
Q ss_pred cCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCC-chhhhHHhhhhHhhhh
Q 033920 36 KVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIP-CKHRKLILKHTHKYRL 97 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp-~r~RKyIL~~~ekyR~ 97 (109)
.-+|.+||..|| +.+|++.|...-=|-+.|+.++...||++||+ .-+|+.|++..++.|.
T Consensus 9 ~~~V~~WL~~~g--l~~y~~~F~~~~i~g~~Ll~l~~~dL~~lGI~~~g~r~kil~~i~~L~~ 69 (74)
T 2gle_A 9 VQQVSHWLVGLS--LDQYVSEFSAQNISGEQLLQLDGNKLKALGMTSSQDRALVKKKLKEMKM 69 (74)
T ss_dssp SGGGHHHHHHTT--THHHHHHHTTTTCCHHHHHTCCHHHHHTTTCCCHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHCC--CHHHHHHHHHcCCCHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 459999999997 99999999654324489999999999999995 8999999999888775
No 17
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=98.23 E-value=1.1e-06 Score=59.31 Aligned_cols=63 Identities=21% Similarity=0.317 Sum_probs=53.8
Q ss_pred CccccCCHHHHHhhhccchhHHHHhhhh-hhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhh
Q 033920 32 QYIVKVGIPEFLNGIGKGVETHSAKLES-EIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYR 96 (109)
Q Consensus 32 p~~~~~dV~tFL~~IGRg~~eha~Kfes-~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR 96 (109)
++...-+|.++|..|| +++|.+.|.. .+.+++.|..++...|+++|| .+-+||.||+-.+..+
T Consensus 22 ~~~~~~~V~eWL~~lg--L~qY~~~F~~~g~~~le~l~~lt~~DL~~lGIt~~GHRkkIL~aI~~LK 86 (86)
T 2k4p_A 22 SGLGEAGMSAWLRAIG--LERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQLSK 86 (86)
T ss_dssp CCCCSCSSHHHHHTTT--CGGGHHHHHTTTCCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHCC
T ss_pred CCCCcCcHHHHHHHCC--CHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHcC
Confidence 3444569999999998 9999999976 346799999999999999999 5899999999887653
No 18
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=98.22 E-value=7.4e-07 Score=61.70 Aligned_cols=62 Identities=24% Similarity=0.368 Sum_probs=52.9
Q ss_pred ccCCHHHHHhhhccchhHHHHhhhh-hhhhHHHHh--hhchHHHHhcCC-CchhhhHHhhhhHhhhhc
Q 033920 35 VKVGIPEFLNGIGKGVETHSAKLES-EIGDFQRLL--VTRTLKLKKLGI-PCKHRKLILKHTHKYRLG 98 (109)
Q Consensus 35 ~~~dV~tFL~~IGRg~~eha~Kfes-~~gdw~~Lf--~~~S~~LKelGI-p~r~RKyIL~~~ekyR~G 98 (109)
..-+|.++|..|| +++|.+.|.. .+.+++.|. .++.+.|+++|| .+-+||.||+-.+..|.-
T Consensus 28 ~~~~V~eWL~~Lg--L~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~eLGIt~~GHRkkIL~aI~~L~~~ 93 (101)
T 2lmr_A 28 LEQSVGEWLESIG--LQQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAARSLPKV 93 (101)
T ss_dssp SSCCHHHHHHHHT--CGGGHHHHHHTTCCCTTSTTTSCCCHHHHHHHTCCCHHHHHHHHHHHHTSSSC
T ss_pred CcccHHHHHHHCC--CHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHHhc
Confidence 3459999999998 9999999965 345688887 899999999999 589999999999887753
No 19
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=98.20 E-value=1.5e-06 Score=56.92 Aligned_cols=61 Identities=21% Similarity=0.235 Sum_probs=53.5
Q ss_pred cCCHHHHHhhhccchhHHHHhhhh-hhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhc
Q 033920 36 KVGIPEFLNGIGKGVETHSAKLES-EIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLG 98 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~~eha~Kfes-~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~G 98 (109)
..+|.++|..|| +++|.+.|.. .+.+++.+-.++...|+++|| ++-+||.||+-.+..+..
T Consensus 12 ~~~V~eWL~~i~--L~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~~ghrkkil~ai~~L~~~ 74 (78)
T 1v38_A 12 HQTIQEFLERIH--LQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLSG 74 (78)
T ss_dssp CCBHHHHHHTTT--CGGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCCHHHHHHHHHHHHHHHSC
T ss_pred cCcHHHHHHHCC--CHHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 348999999998 9999999964 335799999999999999999 689999999999887754
No 20
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=2e-06 Score=55.97 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=57.2
Q ss_pred cCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhccccc
Q 033920 36 KVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLGLWRP 102 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~Gl~~P 102 (109)
.-+|.+||..|+.++.+|++.|...-=|-+.|+.++...||++|| +.-+|+.||+..++.|.-.++.
T Consensus 13 ~~~V~~WL~~l~~gl~~Y~~~F~~~~I~G~~Ll~Lt~~dL~~LGI~~~ghr~~il~~I~~L~~~~~~l 80 (83)
T 2ean_A 13 PSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNSGP 80 (83)
T ss_dssp TTHHHHHHTTSCGGGTTTHHHHHHHTCCHHHHTTCCHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHCCCCHHHHhhCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 568999999996678999999965433568999999999999999 8899999999999998765543
No 21
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=98.17 E-value=1.5e-06 Score=59.78 Aligned_cols=62 Identities=21% Similarity=0.207 Sum_probs=54.7
Q ss_pred cCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhcc
Q 033920 36 KVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLGL 99 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~Gl 99 (109)
..+|.+||..|| +++|++.|... |.+++.|..++...||++|| .+-+||.||+-.++.|.-.
T Consensus 26 ~~~V~~WL~~lg--L~qY~~~F~~~gid~~~~L~~Lt~eDLkeLGIt~~GhRkkIL~aI~~Lr~~~ 89 (100)
T 2kg5_A 26 DLDIAVWLATVH--LEQYADTFRRHGLATAGAARGLGHEELKQLGISATGHRKRILRLLQTGTEEG 89 (100)
T ss_dssp TCBHHHHHGGGT--CGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTTTTCC
T ss_pred cChHHHHHHHCC--CHHHHHHHHHcCCChHHHHHhcCHHHHHHCCCCChhHHHHHHHHHHHHHhcc
Confidence 358999999997 99999999754 45599999999999999999 5799999999999988654
No 22
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=98.17 E-value=1.8e-06 Score=57.53 Aligned_cols=59 Identities=22% Similarity=0.261 Sum_probs=51.3
Q ss_pred ccccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhH
Q 033920 33 YIVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTH 93 (109)
Q Consensus 33 ~~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~e 93 (109)
+....+|.+||..|| +++|.+.|... +.+++.|..++-..|+++|| ++-+||.||+-.+
T Consensus 20 ~~~~~~V~~WL~~lg--L~qY~~~F~~~g~~s~e~l~~lt~~DL~~lGIt~~GHRkkIL~aiq 80 (82)
T 3hil_A 20 GIPYRTVSEWLESIR--MKRYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQ 80 (82)
T ss_dssp CCCCSSHHHHHHHTT--CGGGHHHHHHTTCCSGGGGTTCCHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHhCC--HHHHHHHHHHcCCChHHHHhcCCHHHHHHCCCCCHHHHHHHHHHHH
Confidence 444569999999998 99999999754 46699999999999999999 6799999998765
No 23
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=1.3e-06 Score=56.82 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=53.9
Q ss_pred CccccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHH--hhhchHHHHhcCC-CchhhhHHhhhhHhhhhc
Q 033920 32 QYIVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRL--LVTRTLKLKKLGI-PCKHRKLILKHTHKYRLG 98 (109)
Q Consensus 32 p~~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~L--f~~~S~~LKelGI-p~r~RKyIL~~~ekyR~G 98 (109)
|+....+|.++|..|| +++|.+.|... +.+++.| ..++...|+++|| .+-+||.||+-.+++|..
T Consensus 8 ~~~~~~~V~~WL~~lg--L~~Y~~~F~~~~i~~~~~l~~~~lt~~dL~~lGI~~~ghR~kIl~ai~~L~~~ 76 (80)
T 2eam_A 8 PRCPVQTVGQWLESIG--LPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPSG 76 (80)
T ss_dssp CCCCCCCHHHHHHHHT--CGGGHHHHHHTTCCCTTTSSSSSSCTTHHHHSSCCCHHHHHHHHHHHHHSCCC
T ss_pred CCCChhHHHHHHHHCC--CHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHhcC
Confidence 4555679999999998 99999999763 2445555 5999999999999 589999999999988753
No 24
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=1.9e-06 Score=58.93 Aligned_cols=61 Identities=16% Similarity=0.313 Sum_probs=54.4
Q ss_pred cCCHHHHHhhhccchhHHHHhhhh-hhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhc
Q 033920 36 KVGIPEFLNGIGKGVETHSAKLES-EIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLG 98 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~~eha~Kfes-~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~G 98 (109)
.-+|.++|..|| +.+|.+.|.. .+.+++.+..++...|+++|| .+.+||.||+-.+..|.-
T Consensus 23 ~~sV~eWL~~ig--L~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt~~gHrkkIl~ai~~lr~~ 85 (97)
T 2dl0_A 23 ISSVSDWLISIG--LPMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARLFKLP 85 (97)
T ss_dssp CCSHHHHHHHHT--CGGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCCCHHHHHHHHHHHHTCCCC
T ss_pred cCcHHHHHHHCC--CHHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCCCHHHHHHHHHHHHHHHcc
Confidence 569999999998 9999999954 456799999999999999999 699999999999888754
No 25
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=98.01 E-value=6.3e-06 Score=52.78 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=51.9
Q ss_pred cCCHHHHHhhhccchhHHHHhhhh-hhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhh
Q 033920 36 KVGIPEFLNGIGKGVETHSAKLES-EIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRL 97 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~~eha~Kfes-~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~ 97 (109)
.-+|.+||..++-|+.+|++.|.. .| |-+.|+.++...||++|| ..-+|+-|++..++.|.
T Consensus 8 ~~~V~~WL~~~~~gl~~y~~~F~~~~I-~G~~Ll~L~~~dL~~lGI~~~g~r~~il~~I~~Lr~ 70 (78)
T 3bs7_A 8 VSDVLKWYRRHCGEYTQYEQLFAQHDI-TGRALLRITDSSLQRMGVTDNRDREAIWREIVKQRL 70 (78)
T ss_dssp HHHHHHHHHHHSGGGGGGHHHHHHTTC-CHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHCCC-CHHHHhhCCHHHHhHcCCCCHHHHHHHHHHHHHHHh
Confidence 458999999973339999999964 34 238999999999999999 79999999999998875
No 26
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=98.00 E-value=6.9e-06 Score=54.79 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=55.0
Q ss_pred cCCHHHHHhhhccch--hHHHHhhhhhhhhHHHHhhhchHHHHh--cCC-CchhhhHHhhhhHhhhhc
Q 033920 36 KVGIPEFLNGIGKGV--ETHSAKLESEIGDFQRLLVTRTLKLKK--LGI-PCKHRKLILKHTHKYRLG 98 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~--~eha~Kfes~~gdw~~Lf~~~S~~LKe--lGI-p~r~RKyIL~~~ekyR~G 98 (109)
.-||.++|..|| + .+|++.|...-=|-+.|+.++...||+ +|| ..-+|+.||+..++.|..
T Consensus 22 ~~dV~~WL~~~g--l~~~~Y~~~F~~~~IdG~~Ll~Lt~~dL~~~~LGI~~~g~r~~il~~I~~Lr~~ 87 (91)
T 1v85_A 22 TEEVVLWLEQLG--PWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENSSHRRVILTELERVRSG 87 (91)
T ss_dssp HHHHHHHHHHHC--GGGHHHHHHHHHTTCCHHHHHHCCHHHHHSTTTCCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHhCCCHHHHhcCCHHHHhccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 578999999998 7 999999977666789999999999999 999 789999999999998864
No 27
>2y9t_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle; NMR {Homo sapiens}
Probab=97.99 E-value=6.5e-06 Score=55.54 Aligned_cols=66 Identities=20% Similarity=0.175 Sum_probs=59.7
Q ss_pred CccccCCHHHHHhhhccchhHHHHhhhhhh-hhHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhcc
Q 033920 32 QYIVKVGIPEFLNGIGKGVETHSAKLESEI-GDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGL 99 (109)
Q Consensus 32 p~~~~~dV~tFL~~IGRg~~eha~Kfes~~-gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~Gl 99 (109)
||.....|.++|..|| |..+.|-|.++= ..++.+..++.+.|+.+||+..+||.||+-.+.+|...
T Consensus 2 ~~~~~~SV~~WLd~i~--m~~Y~d~F~~~G~~sl~~V~~lt~eDL~~mGIt~gHqkkIl~siq~lr~~~ 68 (82)
T 2y9t_A 2 SYPTDCSIVSFLARLG--CSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPEQFRHAIWKGILDHRQLH 68 (82)
T ss_dssp CSCCSSBHHHHHHHHT--CGGGHHHHHTTTCCBSGGGTTCCHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHcC--chHHHHHHHHcCCCcHHHHHhcCHHHHHhcCCChhhHHHHHhhHHHHHHHh
Confidence 7788889999999998 999999998643 78999999999999999999999999999998888754
No 28
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}
Probab=97.96 E-value=3.7e-06 Score=57.45 Aligned_cols=60 Identities=22% Similarity=0.310 Sum_probs=50.9
Q ss_pred cCCHHHHHhhhccchhHHHHhhhhh-hhhHHHH--hhhchHHHHhcCC-CchhhhHHhhhhHhhhh
Q 033920 36 KVGIPEFLNGIGKGVETHSAKLESE-IGDFQRL--LVTRTLKLKKLGI-PCKHRKLILKHTHKYRL 97 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~L--f~~~S~~LKelGI-p~r~RKyIL~~~ekyR~ 97 (109)
.-+|.++|..|| +++|.+.|... +.+.+-+ ..++...||++|| .+-+||.||+-.++.|.
T Consensus 22 ~~~V~~WL~~ig--L~qY~~~F~~~gid~~~~l~~~~lt~~DL~~lGI~~~GhRkkIl~ai~~L~~ 85 (103)
T 2ke7_A 22 VQTVGQWLESIG--LPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPK 85 (103)
T ss_dssp -CCTTHHHHHTT--CTTCHHHHHHTTCCCHHHHHTTCCCHHHHHHHTCCCHHHHHHHHHHHHHSCC
T ss_pred HhHHHHHHHHCC--CHHHHHHHHHcCCCcHHHHhcccCCHHHHhHCCCCCHHHHHHHHHHHHHHHh
Confidence 458999999998 99999999653 3455556 5999999999999 58999999999999985
No 29
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=97.95 E-value=9.9e-06 Score=55.70 Aligned_cols=58 Identities=21% Similarity=0.210 Sum_probs=53.0
Q ss_pred cCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCC-chhhhHHhhhhHhhhh
Q 033920 36 KVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIP-CKHRKLILKHTHKYRL 97 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp-~r~RKyIL~~~ekyR~ 97 (109)
..||+++|+.+| +++|++.|++ -+|+.+.+++-++|+++||. .-+||.||.-.++.|.
T Consensus 18 ~~~V~~WL~sLr--LhKY~~~F~~--~~~~~l~~LtdedL~~~GVta~GaRrKil~aI~~lr~ 76 (88)
T 2d3d_A 18 LKNIPMWLKSLR--LHKYSDALSG--TPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVID 76 (88)
T ss_dssp HTCHHHHHHHTT--CGGGHHHHTT--SCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHcc--cchhHHHHhc--CCHHHHHHcCHHHHHHcCCccHhHHHHHHHHHHHHHH
Confidence 469999999998 9999999998 59999999999999999995 9999999988887764
No 30
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=97.92 E-value=1.1e-05 Score=58.31 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=52.9
Q ss_pred CCHHHHHhhhccchhHHHHhhhhhh-hhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhh
Q 033920 37 VGIPEFLNGIGKGVETHSAKLESEI-GDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRL 97 (109)
Q Consensus 37 ~dV~tFL~~IGRg~~eha~Kfes~~-gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~ 97 (109)
.+|.+||..|| +++|.+.|.+.- .+++.|..++...|+++|| .+-+||.||+..+..|.
T Consensus 80 ~~v~~WL~~ig--L~qY~~~F~~~g~d~~~~l~~lt~~dL~~lGI~~~gHr~kIl~ai~~l~~ 140 (149)
T 3sei_A 80 ANLAVWLSMIG--LAQYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAE 140 (149)
T ss_dssp SCHHHHHHHTT--CGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHcC--chhhHHHHHHCCCchHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 48999999997 999999998644 5699999999999999999 69999999999987764
No 31
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=97.90 E-value=1.2e-05 Score=55.50 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=53.4
Q ss_pred cCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhc
Q 033920 36 KVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLG 98 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~G 98 (109)
.-+|.+||..|+.|+.+|++.|... |.. +.|+.++...||++|| ..-+|+.||+..++.|.-
T Consensus 28 ~~~V~~WL~~~~~gl~~Y~~~F~~~~I~G-~~Ll~Lt~~dLk~LGI~~~GhR~kIl~~I~~Lr~~ 91 (106)
T 3bs5_A 28 VSDVLKWYRRHCGEYTQYEQLFAQHDITG-RALLRITDSSLQRMGVTDNRDREAIWREIVKQRLK 91 (106)
T ss_dssp HHHHHHHHHHHSGGGGGGHHHHHHTTCCH-HHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHcCccH-HHHhhCCHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 5689999999943499999999654 532 8999999999999999 789999999999998863
No 32
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=5e-06 Score=56.59 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=52.3
Q ss_pred cCCHHHHHhhhccchhH--HHHhhhhhhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhc
Q 033920 36 KVGIPEFLNGIGKGVET--HSAKLESEIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLG 98 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~~e--ha~Kfes~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~G 98 (109)
.-+|.+||..|| +.+ |++.|...-=|-+.|+.++...||++|| ..-+|+.|++..++.|+-
T Consensus 32 ~~~V~~WL~~lg--l~~~~y~~~F~~~~I~G~~Ll~Lt~~dLkeLGI~~~G~R~kil~~I~~Lr~~ 95 (103)
T 2e8o_A 32 PEQVCSFLRRGG--FEEPVLLKNIRENEITGALLPCLDESRFENLGVSSLGERKKLLSYIQRLVQI 95 (103)
T ss_dssp HHHHHHHHHHHT--CCCHHHHHHHHHTTCCTTTTTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC--CChHHHHHHHHHcCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 578999999997 777 9999965332335899999999999999 899999999999999864
No 33
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=97.82 E-value=1.4e-05 Score=57.71 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=58.1
Q ss_pred ccccCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhcccccC
Q 033920 33 YIVKVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLGLWRPR 103 (109)
Q Consensus 33 ~~~~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~Gl~~P~ 103 (109)
+....+|.+||..|| +++|.+.|...-=|++.|..++...|+++|| .+-+||.||+-.+.++.-.+-|.
T Consensus 7 ~~~~~~V~~WL~~lg--L~~Y~~~F~~~g~d~~~l~~lt~~DL~~lGIt~~gHrkkil~ai~~L~~~~~~~~ 76 (149)
T 3sei_A 7 GKSSEAVSQWLTAFQ--LQLYAPNFISAGYDLPTISRMTPEDLTAIGVTKPGHRKKIAAEISGLSIPDWLPE 76 (149)
T ss_dssp HHHHHHHHHHHHTTT--CGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCSHHHHHHHHHHHHTCCCCCCSCS
T ss_pred cCcHHHHHHHHHHCC--cHHHHHHHHHcCCCHHHHccCCHHHHHHcCCCCHHHHHHHHHHHHHHHhccccCC
Confidence 344568999999998 9999999986444599999999999999999 78899999999999887654343
No 34
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=97.78 E-value=2.9e-05 Score=53.19 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=55.1
Q ss_pred cCCHHHHHhhhccchhHHHHhhhhhh-hhHHHHhhhchHHHHh--cCC-CchhhhHHhhhhHhhhhccccc
Q 033920 36 KVGIPEFLNGIGKGVETHSAKLESEI-GDFQRLLVTRTLKLKK--LGI-PCKHRKLILKHTHKYRLGLWRP 102 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~~eha~Kfes~~-gdw~~Lf~~~S~~LKe--lGI-p~r~RKyIL~~~ekyR~Gl~~P 102 (109)
.-||.++|+.+| +.+|++.|++ | | +.|+.++...||+ +|| ..-+|+.|++-.++.|+.-..+
T Consensus 22 ~edV~~WL~~~G--l~~Y~~~F~~-IdG--~~LL~Lt~~dLk~~~LgI~~~g~rkkl~~~I~~L~~~~~~~ 87 (97)
T 2d8c_A 22 PKKVADWLLENA--MPEYCEPLEH-FTG--QDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETLKMEHHME 87 (97)
T ss_dssp TTHHHHHHHHTT--CTTTTTTTTT-CCH--HHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHcC--CHHHHHHHHc-CCC--HHHhcCCHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 568999999997 9999999976 6 5 4899999999999 999 8999999999999999876544
No 35
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=97.74 E-value=2.6e-05 Score=54.99 Aligned_cols=58 Identities=21% Similarity=0.210 Sum_probs=52.8
Q ss_pred cCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCC-chhhhHHhhhhHhhhh
Q 033920 36 KVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIP-CKHRKLILKHTHKYRL 97 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp-~r~RKyIL~~~ekyR~ 97 (109)
..||+++|+.+| +.+|++.|++ -+|+.+.+++-++|+++||. .-.||.||.-.++.|.
T Consensus 31 ~~dV~~WLksLr--LhKY~~~F~~--~~~~~l~~LTdedL~~~GVta~GARrKiL~aI~~Lr~ 89 (101)
T 2es6_A 31 LKNIPMWLKSLR--LHKYSDALSG--TPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVID 89 (101)
T ss_dssp HTCHHHHHHTTT--CCCTHHHHTT--SCHHHHTTCCHHHHHHHTCCSHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHcc--CcchHHHHcc--CCHHHHHhcCHHHHHHcCCccHhHHHHHHHHHHHHHH
Confidence 479999999998 9999999998 59999999999999999995 8999999988777664
No 36
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=97.71 E-value=2.5e-05 Score=52.46 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=52.8
Q ss_pred cCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHH-HhcCCCchhhhHHhhhhHhhhhc
Q 033920 36 KVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKL-KKLGIPCKHRKLILKHTHKYRLG 98 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~L-KelGIp~r~RKyIL~~~ekyR~G 98 (109)
+-||.+||..+ .||.+|++.|...-=|-+.|+.++...| |++||+.-.|+.|+...++.|+.
T Consensus 19 ~edV~~wL~~l-~gl~~y~~~F~~~~IdG~~LL~Lt~~dL~k~lgIklG~r~kI~~~I~~L~~~ 81 (89)
T 1kw4_A 19 VDDVSNFIREL-PGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKIVAKVESIKEV 81 (89)
T ss_dssp HHHHHHHHHTS-TTCGGGHHHHHHTTCCHHHHHHCCHHHHHTTTCCCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHC-cChHHHHHHHHHhCccHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 56899999999 2399999999765445678999999999 89999999999999999998864
No 37
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.69 E-value=5e-05 Score=54.65 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=52.4
Q ss_pred ccCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCC-chhhhHHhhhhHhhhh
Q 033920 35 VKVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIP-CKHRKLILKHTHKYRL 97 (109)
Q Consensus 35 ~~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp-~r~RKyIL~~~ekyR~ 97 (109)
..-||.++|+.+| +++|++.|++ -+|+.|.+++-..|+++||. .-+||.||...++.|.
T Consensus 48 ~~~dV~~WL~sLr--L~KY~~~F~~--~~~d~l~~LTeeDL~~lGVta~GaRrKlL~AI~~Lr~ 107 (119)
T 2b6g_A 48 LLKNIPMWLKSLR--LHKYSDALSG--TPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVID 107 (119)
T ss_dssp HHHCHHHHHHHHT--CHHHHHHHTT--SCHHHHTTCCHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHCC--ChhHHHHHcc--CCHHHHHhcCHHHHHHCCCCccccHHHHHHHHHHHHh
Confidence 3579999999998 9999999976 59999999999999999995 9999999887776654
No 38
>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A
Probab=97.65 E-value=6.6e-05 Score=48.99 Aligned_cols=61 Identities=20% Similarity=0.170 Sum_probs=54.5
Q ss_pred cCCHHHHHhhhccchhHHHHhhhhhh-hhHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhc
Q 033920 36 KVGIPEFLNGIGKGVETHSAKLESEI-GDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLG 98 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~~eha~Kfes~~-gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~G 98 (109)
...|.++|..|| |..+.|-|.++= ..++.+..++.+.|+.+||+..+||.||+-.+.+|..
T Consensus 4 d~sv~~WLd~i~--m~~Y~d~F~~~g~~s~~~v~~lt~eDL~~~GIt~ghqkkIl~siq~lr~~ 65 (69)
T 2y9u_A 4 DCSIVSFLARLG--CSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPEQFRHAIWKGILDHRQL 65 (69)
T ss_dssp CCBHHHHHHTTT--CGGGHHHHHTTTCCBHHHHTTCCHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHcC--ChHHHHHHHHcCCCcHHHHHHcCHHHHHhcCCChhhHHHHHHhHHHHHhc
Confidence 457999999998 999999998643 7899999999999999999999999999988887753
No 39
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=97.49 E-value=6e-05 Score=53.91 Aligned_cols=65 Identities=20% Similarity=0.209 Sum_probs=51.4
Q ss_pred CccccCCHHHHHhhhccchhHHHHhhhhhh-hhHHHHh--hhchHHHHhcCC-CchhhhHHhhhhHhhhhc
Q 033920 32 QYIVKVGIPEFLNGIGKGVETHSAKLESEI-GDFQRLL--VTRTLKLKKLGI-PCKHRKLILKHTHKYRLG 98 (109)
Q Consensus 32 p~~~~~dV~tFL~~IGRg~~eha~Kfes~~-gdw~~Lf--~~~S~~LKelGI-p~r~RKyIL~~~ekyR~G 98 (109)
|-....+|.++|..|| +++|.+.|.+.= .+++-+. .++...|+++|| .+-+||.||+-.+.+|.-
T Consensus 10 ~~~~~~~V~~WL~~ig--L~~Y~~~F~~~g~d~~~~l~~~~lt~~DL~~lGI~~~ghRkkil~ai~~L~~~ 78 (148)
T 2kiv_A 10 PRGSVQTVGQWLESIG--LPQYENHLMANGFDNVQAMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKM 78 (148)
T ss_dssp ----CCBHHHHHHHHS--CTTSHHHHHHTTTTBGGGGTSSCCCHHHHHHHCCSSTTSHHHHHHHHHHCSCC
T ss_pred CCCCcchHHHHHHHCC--CHHHHHHHHHcCCCHHHHhhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHHHh
Confidence 3444568999999998 999999997533 4445554 899999999999 589999999999998864
No 40
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=97.43 E-value=7.2e-05 Score=50.63 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=54.9
Q ss_pred cCCHHHHHhhhccchhHHHHhhhh-hhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhcccccC
Q 033920 36 KVGIPEFLNGIGKGVETHSAKLES-EIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLGLWRPR 103 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~~eha~Kfes-~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~Gl~~P~ 103 (109)
.-+|.++|..|.-++.+| .|.. .| +-+.|+.++...||++|| .+-+|+.||+-.++.|+-.++-.
T Consensus 16 ~~~V~~WL~~l~~~l~~Y--~F~~~~I-~G~~LL~Lt~~dL~~LGI~~~Ghr~~Il~~I~~L~~~~~~l~ 82 (91)
T 1wwv_A 16 PGKVATWLRGLDDSLQDY--PFEDWQL-PGKNLLQLCPQSLEALAVRSLGHQELILGGVEQLQALSSRLQ 82 (91)
T ss_dssp TTTHHHHHHHHCHHHHTS--CHHHHCC-CHHHHTTCCTTTGGGGTCCCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHhcCCccccc--cHHhcCc-cHHHHhhCCHHHHHHcCCCcHhHHHHHHHHHHHHHHHhhccc
Confidence 569999999886668888 6754 34 368999999999999999 89999999999999998776543
No 41
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=97.39 E-value=0.00017 Score=54.98 Aligned_cols=58 Identities=12% Similarity=0.181 Sum_probs=53.7
Q ss_pred CCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhc
Q 033920 37 VGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLG 98 (109)
Q Consensus 37 ~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~G 98 (109)
.||+++|+.+| +++|++.|.+ -+|+.+.+++-..|+++||..-+||-||.-.+++|..
T Consensus 8 ~dV~~WLksLr--LhKY~~~F~~--~~~e~~~~LTdedL~~~GVT~GARrKIL~aIq~Lrer 65 (173)
T 1oxj_A 8 SGIGLWLKSLR--LHKYIELFKN--MTYEEMLLITEDFLQSVGVTKGASHKLALCIDKLKER 65 (173)
T ss_dssp TTHHHHHHHTT--CGGGGGGGTT--CCHHHHTTCCHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHcc--cchhHHHHcc--CCHHHHHhcCHHHHHHCCCchHHHHHHHHHHHHHHHH
Confidence 39999999998 9999999998 6899999999999999999889999999998888853
No 42
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=97.30 E-value=0.00025 Score=50.69 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=49.5
Q ss_pred cccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHH-HhcCC-CchhhhHHhhhhH
Q 033920 34 IVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKL-KKLGI-PCKHRKLILKHTH 93 (109)
Q Consensus 34 ~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~L-KelGI-p~r~RKyIL~~~e 93 (109)
....+|.++|..|| +++|++.|.+. +.+++.|..++...| +++|| .+.+||.||+-.+
T Consensus 86 ~~~~~v~~WL~~i~--L~qY~~~F~~~g~~~~~~l~~lt~~dLl~~lGI~~~gHrkrIl~ai~ 146 (148)
T 2kiv_A 86 AHPTSVAEWLDSIE--LGDYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILASLG 146 (148)
T ss_dssp CCCSSHHHHHHTTT--CCTHHHHHHHHTCCSHHHHTSCCHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHCC--cHHHHHHHHHcCCChHHHHHhCCHHHHHHhCCCCChhHHHHHHHHHh
Confidence 33469999999998 99999999764 357999999999996 99999 6999999997653
No 43
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=96.74 E-value=0.0018 Score=43.54 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=51.4
Q ss_pred ccCCHHHHHhhhccchhHHHHhhhh-hhhhHHHHhhhchHHH-HhcCCCchhhhHHhhhhHhhhhc
Q 033920 35 VKVGIPEFLNGIGKGVETHSAKLES-EIGDFQRLLVTRTLKL-KKLGIPCKHRKLILKHTHKYRLG 98 (109)
Q Consensus 35 ~~~dV~tFL~~IGRg~~eha~Kfes-~~gdw~~Lf~~~S~~L-KelGIp~r~RKyIL~~~ekyR~G 98 (109)
.+-||.+||+.+..||.+|++.|.. +| |=+.|+.++...| +.+||..-.+.-|....++.|.+
T Consensus 18 svedV~~wl~~~~~g~~~y~~~F~~~eI-DG~aLL~Lt~~dl~~~mgiklGpalKi~~~I~~lk~~ 82 (89)
T 1pk1_B 18 TIEEVIQYIESNDNSLAVHGDLFRKHEI-DGKALLRLNSERMMKYMGLKLGPALKICNLVNKVNGR 82 (89)
T ss_dssp CHHHHHHHHHHHCGGGGGGHHHHHHTTC-CHHHHHTCCHHHHHHHSCCCHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHccchHHHHHHHHHcCc-ChHHHhcCCHHHHHHccCCCccHHHHHHHHHHHHHcc
Confidence 3679999999996669999999964 34 3367999999976 67999999999999999998865
No 44
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Probab=95.31 E-value=0.01 Score=47.12 Aligned_cols=68 Identities=22% Similarity=0.111 Sum_probs=56.6
Q ss_pred cCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHH-HhcCC-CchhhhHHhhhhHhhhhcccccCCC
Q 033920 36 KVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKL-KKLGI-PCKHRKLILKHTHKYRLGLWRPRAA 105 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~L-KelGI-p~r~RKyIL~~~ekyR~Gl~~P~g~ 105 (109)
..+|.+.|..|| +..|.+.|...+-|=..|+.++...| |++|| .+=+||.|+.-.+.++...+.+-|+
T Consensus 20 ~e~V~~WLe~~G--L~~Y~~~f~~n~~dG~~Ll~lt~~dLe~eLGI~nplHRkKL~laI~el~~~~~~~~~~ 89 (265)
T 3tad_C 20 KEQVCSWLAEQG--LGSYLSSGKHWIISGQTLLQASQQDLEKELGIKHSLHRKKLQLALQALGSEEETNYGK 89 (265)
T ss_dssp HHHHHHHHHHTT--CCTTHHHHTTTCSCSHHHHHSCHHHHHHHTCCCSHHHHHHHHHHHHHHHHCSCCSGGG
T ss_pred hHHHHHHHHHHC--HHHHHHHHHHhCCchHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHhcccccccccc
Confidence 578999999998 77899999875644456999999999 59999 9999999999999999876654333
No 45
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=94.76 E-value=0.036 Score=37.71 Aligned_cols=65 Identities=22% Similarity=0.311 Sum_probs=41.9
Q ss_pred CccccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhc
Q 033920 32 QYIVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLG 98 (109)
Q Consensus 32 p~~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~G 98 (109)
||...+.|..||+++| |...+|-|.+. +-+.-.|=+.+=+.|-.+.||-++|--|-+=.-.||++
T Consensus 2 py~~D~Sv~s~Lt~LG--c~~~Id~F~~qgl~~i~qL~~~~ledL~~mkIpe~~R~kIWk~l~e~~q~ 67 (80)
T 1dxs_A 2 SYHADPSLVSFLTGLG--CPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIPEQYRMTIWRGLQDLKQG 67 (80)
T ss_dssp ------CHHHHHHHTT--CTTSHHHHHTTTCCCHHHHHTCCHHHHHHTTCCTTTHHHHHHHHHHC---
T ss_pred CCCCCccHHHHHHhcC--chHHHHHHHHcCcccchhhccCCHHHHHhCCCCHHHHHHHHhhHHHhccc
Confidence 7889999999999999 99999998761 12233344567788889999988886665555555544
No 46
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.51 E-value=0.027 Score=38.59 Aligned_cols=61 Identities=18% Similarity=0.127 Sum_probs=49.5
Q ss_pred cCCHHHHHhhhccchhHH-HHhhhhhhhhHHHHhhhchHHHHh-cCCCchhhhHHhhhhHhhhhcccccC
Q 033920 36 KVGIPEFLNGIGKGVETH-SAKLESEIGDFQRLLVTRTLKLKK-LGIPCKHRKLILKHTHKYRLGLWRPR 103 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~~eh-a~Kfes~~gdw~~Lf~~~S~~LKe-lGIp~r~RKyIL~~~ekyR~Gl~~P~ 103 (109)
+-+|.++|+.|| +.++ +++|+.+==|=+-|++++...|++ +|+..-|+|.|+...+ | |.|.
T Consensus 20 v~EVs~~Lr~ig--L~e~vv~~F~~e~IDG~lL~~L~ee~L~edf~ls~Lq~kKi~~fI~----G-WrPk 82 (84)
T 2dkz_A 20 IEEVSKSLRFIG--LSEDVISFFVTEKIDGNLLVQLTEEILSEDFKLSKLQVKKIMQFIN----G-SGPS 82 (84)
T ss_dssp HHHHHHHGGGTC--CCHHHHHHHHTTTCCHHHHHHCCHHHHHHTSCCCHHHHHHHHHHHH----C-CCTT
T ss_pred HHHHHHHHHHcC--CcHHHHHHHHHHccchHHHHhCCHHHHHhhcCCCHHHHHHHHHHHh----c-CCCC
Confidence 678999999998 8875 699987654445688999999976 9999999999997763 3 5664
No 47
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Probab=93.84 E-value=0.1 Score=41.45 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=56.9
Q ss_pred CCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhcccccC
Q 033920 37 VGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLGLWRPR 103 (109)
Q Consensus 37 ~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~Gl~~P~ 103 (109)
..|.+||..|| ..+|.+.|.+.--|-.-|-.++-..|+++|| .+-+|+.|++-....|..-|-|.
T Consensus 93 ~wv~~WL~~IG--L~QY~~~F~~~~iDg~~L~~LT~~DL~~LGIt~~~HR~kil~aI~~L~~~~~d~~ 158 (265)
T 3tad_C 93 NWVTRWLDDIG--LPQYKTQFDEGRVDGRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQVLRINNFEPN 158 (265)
T ss_dssp HHHHHHHHHHT--CGGGHHHHHHHTCCHHHHHTCBHHHHHHTTCCBHHHHHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHHHHHcC--cHHHHHHHHHcCCCHHHhcccCHHHHHHcCCCcHHhHHHHHHHHHHHhhcCCCHH
Confidence 36789999999 9999999997556778888999999999999 79999999999999888776654
No 48
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A
Probab=85.18 E-value=0.83 Score=37.66 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=49.7
Q ss_pred cCCHHHHHhh-hccchhH-HHHhhhhhhhhHHHHhhhchHHH-HhcCC-CchhhhHHhhhhHhhh
Q 033920 36 KVGIPEFLNG-IGKGVET-HSAKLESEIGDFQRLLVTRTLKL-KKLGI-PCKHRKLILKHTHKYR 96 (109)
Q Consensus 36 ~~dV~tFL~~-IGRg~~e-ha~Kfes~~gdw~~Lf~~~S~~L-KelGI-p~r~RKyIL~~~ekyR 96 (109)
..+|.+.|.. || +.. |.+.|..-+-+=.-|+.++...| |++|| .+=+||.|+.-.+.++
T Consensus 41 ~~~V~aWLe~~iG--mp~~Yv~~~r~nvkSG~~Ll~LSd~dLekeLGI~nPLHRKKL~LAIqel~ 103 (334)
T 3tac_B 41 GPTVVAWLELWLG--MPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEMV 103 (334)
T ss_dssp HHHHHHHHHHTTC--CCHHHHHHHHHHCCSHHHHHTCCHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhc--ChHHHHHHHHHHccchHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 4689999998 77 876 88888886644466889999999 69999 9999999999999986
No 49
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=77.56 E-value=0.85 Score=29.22 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.0
Q ss_pred CHHHHHhhhccchhHHHHhhhhhhh
Q 033920 38 GIPEFLNGIGKGVETHSAKLESEIG 62 (109)
Q Consensus 38 dV~tFL~~IGRg~~eha~Kfes~~g 62 (109)
+-..||+.||+++.+--+.|.+.+|
T Consensus 27 e~SNFLRvIGKnL~eIRd~F~~~i~ 51 (57)
T 3fxd_A 27 DKSNFLRVIGKKLIAIRDRFLKRIG 51 (57)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 6678999999999999999998654
No 50
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=68.33 E-value=14 Score=31.08 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=50.2
Q ss_pred cccccCCCCCC------ccccCCHHHHHhhhccchhHHHHh-hhhhhhhHHHHhhhchHHHHhcCCC-----chhhhHHh
Q 033920 22 SRFFTSKASNQ------YIVKVGIPEFLNGIGKGVETHSAK-LESEIGDFQRLLVTRTLKLKKLGIP-----CKHRKLIL 89 (109)
Q Consensus 22 ~r~fs~~~~~p------~~~~~dV~tFL~~IGRg~~eha~K-fes~~gdw~~Lf~~~S~~LKelGIp-----~r~RKyIL 89 (109)
..||+..+... .-.++.+...|+.+ +.+|..+ +++-....++.+.....+|+++|-+ ..++.||+
T Consensus 275 ~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~---L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg~~~~~~~~~~~~~l~ 351 (608)
T 3szr_A 275 KIFFENHPYFRDLLEEGKATVPCLAEKLTSE---LITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLI 351 (608)
T ss_dssp HHHTTTCTTTSGGGGTCC---CCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCSHHHHHHHHH
T ss_pred HHHHccCccccccCccccccHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 45777655311 11246667777766 7777764 4443378999999999999999973 25678899
Q ss_pred hhhHhhhh
Q 033920 90 KHTHKYRL 97 (109)
Q Consensus 90 ~~~ekyR~ 97 (109)
....+|-+
T Consensus 352 ~~~~~f~~ 359 (608)
T 3szr_A 352 DKVNAFNQ 359 (608)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988854
No 51
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}
Probab=68.06 E-value=6.7 Score=29.43 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=41.9
Q ss_pred HHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchH-HHHhcCCCchhhhHHhhhhHhhhhcccccCC
Q 033920 39 IPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTL-KLKKLGIPCKHRKLILKHTHKYRLGLWRPRA 104 (109)
Q Consensus 39 V~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~-~LKelGIp~r~RKyIL~~~ekyR~Gl~~P~g 104 (109)
+-.+|+.||+..+++.. + ..+.+|..=.. -+++..+|.+.|-.|+.-.|- |..-|+|+.
T Consensus 153 l~~LL~tvG~~Ld~~~~--~----~md~~f~~l~~~l~~~~~ls~RiRfml~dlieL-R~~~W~~~~ 212 (224)
T 2i2o_A 153 LVLQLHRIGDQLEKMNV--Q----LMDELFNLLRDGFLLQEDLSSMGRLLLLEILEF-RAGGWKLSD 212 (224)
T ss_dssp HHHHHHHHHHHHHHHCH--H----HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHTTSCCCH
T ss_pred HHHHHHHHHHHHHcccH--H----HHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHH-HHCCCCCCc
Confidence 45678999988887644 2 35666644444 355568899999998888855 888899874
No 52
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=65.07 E-value=5.4 Score=24.67 Aligned_cols=46 Identities=22% Similarity=0.249 Sum_probs=32.1
Q ss_pred hhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhc-CCCchhhhHHhhhh
Q 033920 44 NGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKL-GIPCKHRKLILKHT 92 (109)
Q Consensus 44 ~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKel-GIp~r~RKyIL~~~ 92 (109)
..||... +.++-+.+|++++++.++..+|.+. ||..+.-..|..+.
T Consensus 30 ~gIG~~~---A~~Ll~~fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 30 EGVGPKR---RQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp TTCSSSH---HHHHHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHH
T ss_pred CCCCHHH---HHHHHHHcCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
Confidence 4556443 4555555677999999999999886 99776666665543
No 53
>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein interaction domain, growth arrest, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1z1v_A
Probab=62.02 E-value=6.2 Score=26.82 Aligned_cols=38 Identities=21% Similarity=0.059 Sum_probs=31.0
Q ss_pred hhhh-hhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhh
Q 033920 58 ESEI-GDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRL 97 (109)
Q Consensus 58 es~~-gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~ 97 (109)
++.| |+ =|.+++...|||++| .-..|..+....+++|.
T Consensus 39 ~ndItG~--vL~eL~leDlKEL~i~s~~~r~~lk~~In~Lr~ 78 (85)
T 1uqv_A 39 ENDIVGD--LLPELCLQDCQDLCDGDLNKAIKFKILINKMRD 78 (85)
T ss_dssp HSCCCGG--GHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHH
T ss_pred HcCCchh--hHHHcCHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 4444 44 377899999999999 88889999999999984
No 54
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=60.58 E-value=15 Score=23.05 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=29.8
Q ss_pred HHHhhhhhhhhHHHHhhhchHHHHhc-CCCchhhhHHhhhh
Q 033920 53 HSAKLESEIGDFQRLLVTRTLKLKKL-GIPCKHRKLILKHT 92 (109)
Q Consensus 53 ha~Kfes~~gdw~~Lf~~~S~~LKel-GIp~r~RKyIL~~~ 92 (109)
-+.++-+.+|++++++.++..+|.+. ||..+.-..|..+.
T Consensus 31 ~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l 71 (89)
T 1z00_A 31 DSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVL 71 (89)
T ss_dssp HHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHH
Confidence 34555556677999999999999887 99766666666554
No 55
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=60.24 E-value=10 Score=25.03 Aligned_cols=45 Identities=13% Similarity=0.119 Sum_probs=32.5
Q ss_pred cchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCCchhhhHHhhhh
Q 033920 48 KGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHT 92 (109)
Q Consensus 48 Rg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ 92 (109)
..|.+||..|+..==+=+-|-.++...|+++||-.=.-=.||++.
T Consensus 17 ~~c~rYA~~F~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVmk~l 61 (72)
T 3idw_A 17 SNCQRYTINFDREQLTEDMMPDINNSMLRTLGLREGDIVRVMKHL 61 (72)
T ss_dssp HHHHHHHHHHHHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHhhCCHHHHHHcCCchhhHHHHHHHH
Confidence 358999999987443445677899999999999654444455544
No 56
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=59.01 E-value=16 Score=21.53 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=30.0
Q ss_pred HHHhhhhhhhhHHHHhhhchHHHHhc-CCCchhhhHHhhhh
Q 033920 53 HSAKLESEIGDFQRLLVTRTLKLKKL-GIPCKHRKLILKHT 92 (109)
Q Consensus 53 ha~Kfes~~gdw~~Lf~~~S~~LKel-GIp~r~RKyIL~~~ 92 (109)
-+.++-+.+|++++++.++..+|.+. ||..+.-..|..+.
T Consensus 26 ~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~ 66 (75)
T 1x2i_A 26 LARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVI 66 (75)
T ss_dssp HHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHH
Confidence 45556666778999999999999876 99776666666554
No 57
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=57.42 E-value=19 Score=22.81 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=30.2
Q ss_pred HHHhhhhhhhhHHHHhhhchHHHHhc-CCCchhhhHHhhhh
Q 033920 53 HSAKLESEIGDFQRLLVTRTLKLKKL-GIPCKHRKLILKHT 92 (109)
Q Consensus 53 ha~Kfes~~gdw~~Lf~~~S~~LKel-GIp~r~RKyIL~~~ 92 (109)
-+.++-+.+|++++++.++-.+|.+. ||..+.-..|+.+.
T Consensus 44 ~A~~Ll~~fgs~~~l~~as~~eL~~i~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 44 DSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVL 84 (91)
T ss_dssp HHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHH
Confidence 35556666778999999999999887 99766666666554
No 58
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=53.37 E-value=15 Score=27.64 Aligned_cols=37 Identities=11% Similarity=-0.037 Sum_probs=33.4
Q ss_pred HHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhccc
Q 033920 64 FQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLW 100 (109)
Q Consensus 64 w~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~Gl~ 100 (109)
.+.|..++..+|+..|++-+--+||..-.+.+..|..
T Consensus 98 pe~la~~~~e~Lr~~Gl~~~Ka~~l~~~A~~~~~g~~ 134 (232)
T 4b21_A 98 PKQIMETDVETLHECGFSKLKSQEIHIVAEAALNKQI 134 (232)
T ss_dssp HHHHHTSCHHHHHTTTCCHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHcCCHHHHHHcCCcHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999997778999999999888753
No 59
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=51.15 E-value=9.3 Score=26.31 Aligned_cols=39 Identities=31% Similarity=0.304 Sum_probs=29.8
Q ss_pred cCCHHHHHhhhccch---hHHHHhhhhhhhhHHHHhhhchHHHHhc
Q 033920 36 KVGIPEFLNGIGKGV---ETHSAKLESEIGDFQRLLVTRTLKLKKL 78 (109)
Q Consensus 36 ~~dV~tFL~~IGRg~---~eha~Kfes~~gdw~~Lf~~~S~~LKel 78 (109)
.|+..++|++||..+ .+..++||.+|+-.+.+. ..|||+
T Consensus 32 dP~lk~~L~Kig~Ei~~l~eLLn~~E~eV~~Qe~~~----~sLKEL 73 (91)
T 4aj5_A 32 EPTLKTVLNKIGDEIIVINELLNKLELEIQYQEQTN----NSLKEL 73 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 468889999999764 577889999888887773 345554
No 60
>3j20_T 30S ribosomal protein S19P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.56 E-value=8.5 Score=27.89 Aligned_cols=25 Identities=20% Similarity=0.501 Sum_probs=16.6
Q ss_pred hHHHHhhhchHHHHhcCCCchhhhHH
Q 033920 63 DFQRLLVTRTLKLKKLGIPCKHRKLI 88 (109)
Q Consensus 63 dw~~Lf~~~S~~LKelGIp~r~RKyI 88 (109)
|+|+|++++.++|-++ .|++|||.|
T Consensus 12 ~ld~L~~ms~~~l~~L-~~ar~rRsl 36 (132)
T 3j20_T 12 TLEQLMNMSLEELARL-FPARQRRSL 36 (132)
T ss_dssp CHHHHHHHHHHHHHHH-SCHHHHHHH
T ss_pred cHHHHHcCCHHHHHHH-hhHHHHHHh
Confidence 4667777777776665 577777754
No 61
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=47.19 E-value=14 Score=28.10 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=34.1
Q ss_pred HHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhccc
Q 033920 64 FQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLW 100 (109)
Q Consensus 64 w~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~Gl~ 100 (109)
.+.|..++..+|+..|++-+--+||..-.+.+..|.+
T Consensus 158 p~~la~~~~~~Lr~~G~~~~ra~~i~~~A~~~~~~~~ 194 (282)
T 1mpg_A 158 PQRLAAADPQALKALGMPLKRAEALIHLANAALEGTL 194 (282)
T ss_dssp HHHHHTCCHHHHHHTTSCHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHcCCHHHHHHcCCCHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999998889999999999988743
No 62
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=46.79 E-value=15 Score=27.36 Aligned_cols=38 Identities=8% Similarity=0.011 Sum_probs=34.3
Q ss_pred hHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhccc
Q 033920 63 DFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLW 100 (109)
Q Consensus 63 dw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~Gl~ 100 (109)
+++.|..++..+|+..|++-+--+||..-.+.+..|.+
T Consensus 86 tp~~la~~~~e~Lr~~G~~~rKa~~i~~~A~~~~~g~~ 123 (228)
T 3s6i_A 86 TPEEIRDMDFEIMRACGFSARKIDSLKSIAEATISGLI 123 (228)
T ss_dssp CHHHHHHSCHHHHHHHTCCHHHHHHHHHHHHHHHHTSS
T ss_pred CHHHHHcCCHHHHHHcCCCHHHHHHHHHHHHHHHcCCC
Confidence 39999999999999999999989999999999987753
No 63
>2ksc_A Cyanoglobin; hemeprotein, 2/2 hemoglobin, GLBN, TRHBN, unknown function; HET: HEB; NMR {Synechococcus SP}
Probab=46.74 E-value=18 Score=23.93 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=31.7
Q ss_pred hhHHHHhhhchHHHHhcCCCchhhhHHhhhhHhh--hhcc
Q 033920 62 GDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKY--RLGL 99 (109)
Q Consensus 62 gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~eky--R~Gl 99 (109)
..++..+..=...|.+.|+|...+..++...+.+ |..+
T Consensus 81 ~~fd~wl~~~~~al~e~~~~~~~~~~l~~~~~~~~~r~~i 120 (123)
T 2ksc_A 81 VHFDAIAENLVLTLQELNVSQDLIDEVVTIVGSVQHRNDV 120 (123)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcchhhh
Confidence 3566677777788999999999999999999988 8654
No 64
>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*
Probab=45.71 E-value=11 Score=27.61 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=12.6
Q ss_pred HHHHhhhchHHHHhcCCCchhhhH
Q 033920 64 FQRLLVTRTLKLKKLGIPCKHRKL 87 (109)
Q Consensus 64 w~~Lf~~~S~~LKelGIp~r~RKy 87 (109)
+|+|++++.++|-++ .|++|||.
T Consensus 22 ld~Ll~ms~e~l~~L-~~aR~RR~ 44 (142)
T 3u5c_P 22 LEKLLEMSTEDFVKL-APARVRRR 44 (142)
T ss_dssp HHHHHTTCHHHHHHH-SCHHHHHH
T ss_pred HHHHHcCCHHHHHHH-hhHHHhhh
Confidence 555555555555554 45555553
No 65
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=43.96 E-value=22 Score=26.43 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=34.3
Q ss_pred hHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhccc
Q 033920 63 DFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLW 100 (109)
Q Consensus 63 dw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~Gl~ 100 (109)
+++.|..++..+|+..|.+-+--+||..-.+.+..|..
T Consensus 94 tp~~la~~~~e~Lr~~G~~~~KA~~i~~lA~~~~~g~~ 131 (225)
T 2yg9_A 94 VPAALLKVSGDDLRGVGLSWAKVRTVQAAAAAAVSGQI 131 (225)
T ss_dssp CHHHHTTSCHHHHHHTTCCHHHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHcCCHHHHHHCCCcHHHHHHHHHHHHHHHhCCc
Confidence 59999999999999999998888999999999988753
No 66
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=43.59 E-value=18 Score=25.38 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=22.4
Q ss_pred HHhhhchHHHHhcCC-CchhhhHHhhhhHh
Q 033920 66 RLLVTRTLKLKKLGI-PCKHRKLILKHTHK 94 (109)
Q Consensus 66 ~Lf~~~S~~LKelGI-p~r~RKyIL~~~ek 94 (109)
.+++.-...||+.|+ .++||+.||.....
T Consensus 15 ~~~~~~~~~L~~~g~r~T~qR~~IL~~L~~ 44 (162)
T 4ets_A 15 VLLERFKKILRQGGLKYTKQREVLLKTLYH 44 (162)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Confidence 344444557999999 99999999998754
No 67
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A
Probab=42.04 E-value=29 Score=28.49 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=51.7
Q ss_pred HHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHH-HhcCC-CchhhhHHhhhhHhhhhccccc
Q 033920 41 EFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKL-KKLGI-PCKHRKLILKHTHKYRLGLWRP 102 (109)
Q Consensus 41 tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~L-KelGI-p~r~RKyIL~~~ekyR~Gl~~P 102 (109)
.+|.-|| .-+|.+.|.+.--|=.-|-.++-..| ..+|| .+-+|+.|+.=.+-.|..-|-|
T Consensus 168 ~WL~dIG--LpQY~~~F~~~~VDgR~L~~Lt~~DL~~~LgIt~~~Hr~sI~~gI~~Lr~~~~d~ 229 (334)
T 3tac_B 168 EWLPSLG--LPQYRSYFMECLVDARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLKRLNYDR 229 (334)
T ss_dssp THHHHTT--CGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCCCHHHHHHHHHHHHHHHHTTTCH
T ss_pred hhccccC--hHHhHHHHHhcCcchhhhhhccHHHHHhccCCCcHHHHHHHHHHHHHhhhcCCCH
Confidence 7899998 89999999987777788888999999 79999 9999999998888877766543
No 68
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=41.24 E-value=24 Score=26.26 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=33.2
Q ss_pred hHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhcc
Q 033920 63 DFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGL 99 (109)
Q Consensus 63 dw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~Gl 99 (109)
+++.|..++..+|+..|.+-+--+||..-++.+..|.
T Consensus 86 tp~~la~~~~e~Lr~~G~~~~KA~~I~~~A~~i~~~~ 122 (233)
T 2h56_A 86 KPEQLYRVSDEALRQAGVSKRKIEYIRHVCEHVESGR 122 (233)
T ss_dssp CTHHHHTSCHHHHHHTTCCHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHcCCHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 3999999999999999999888899999999988764
No 69
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=40.84 E-value=16 Score=24.98 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=18.9
Q ss_pred HHHHhcCC-CchhhhHHhhhhHh
Q 033920 73 LKLKKLGI-PCKHRKLILKHTHK 94 (109)
Q Consensus 73 ~~LKelGI-p~r~RKyIL~~~ek 94 (109)
..||+.|+ .++||+.||.....
T Consensus 8 ~~L~~~g~r~T~qR~~Il~~l~~ 30 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQLVLEAVDT 30 (145)
T ss_dssp HHHHTTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCcCHHHHHHHHHHHh
Confidence 35899999 99999999998754
No 70
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=36.78 E-value=34 Score=21.70 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=23.4
Q ss_pred hHHHHhcCCCchhhhHHhhhhHhhhhcc
Q 033920 72 TLKLKKLGIPCKHRKLILKHTHKYRLGL 99 (109)
Q Consensus 72 S~~LKelGIp~r~RKyIL~~~ekyR~Gl 99 (109)
..-|+-+|++--++.-|=+..+|||.-+
T Consensus 33 k~Il~~M~v~gLT~~~VkSHLQKYR~~l 60 (64)
T 1irz_A 33 KKILDLMNVDKLTRENVASHLQKFRVAL 60 (64)
T ss_dssp HHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 3456778999899999999999999754
No 71
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=35.99 E-value=13 Score=28.01 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=19.6
Q ss_pred hhHHHHhhhchHHHHh---cCCCchhhhHH
Q 033920 62 GDFQRLLVTRTLKLKK---LGIPCKHRKLI 88 (109)
Q Consensus 62 gdw~~Lf~~~S~~LKe---lGIp~r~RKyI 88 (109)
.+|++....++.+||+ .|||..-|..+
T Consensus 13 ~~w~~~~~~~~~~l~~l~~~GIP~~lR~~v 42 (310)
T 3hzj_A 13 GKWHSNLGARPKGLSTLVKSGVPEALRAEV 42 (310)
T ss_dssp HHHHTSTTSCCTTHHHHHHHCCCGGGHHHH
T ss_pred HHHhhhcccCHHHHHHHHHCCCCHHHHHHH
Confidence 4566666656667776 59999999865
No 72
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=35.22 E-value=37 Score=20.51 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=26.9
Q ss_pred HHhhhhhhhhHHHHhhhchHHHHhcCCCchh-hhHHhhhh
Q 033920 54 SAKLESEIGDFQRLLVTRTLKLKKLGIPCKH-RKLILKHT 92 (109)
Q Consensus 54 a~Kfes~~gdw~~Lf~~~S~~LKelGIp~r~-RKyIL~~~ 92 (109)
..++-..+|+++++.+++-++|.+. |+.+. =+-|..+-
T Consensus 17 ~~~LL~~Fgs~~~i~~As~eeL~~v-ig~~~~A~~I~~~l 55 (63)
T 2a1j_A 17 CRSLMHHVKNIAELAALSQDELTSI-LGNAANAKQLYDFI 55 (63)
T ss_dssp HHHHHHHCSSHHHHHTCCHHHHHHH-HSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHCCHHHHHHH-cCchHHHHHHHHHH
Confidence 3444455666999999999999999 86555 45554443
No 73
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.77 E-value=23 Score=23.79 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.6
Q ss_pred hHHHHhcCC-CchhhhHHhhhhHh
Q 033920 72 TLKLKKLGI-PCKHRKLILKHTHK 94 (109)
Q Consensus 72 S~~LKelGI-p~r~RKyIL~~~ek 94 (109)
...||+.|+ .++||+.||.....
T Consensus 6 ~~~l~~~g~r~T~qR~~Il~~L~~ 29 (136)
T 1mzb_A 6 NSELRKAGLKVTLPRVKILQMLDS 29 (136)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHh
Confidence 456999999 99999999998754
No 74
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=33.73 E-value=26 Score=24.78 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.0
Q ss_pred HHHHhhhchHHHHhcCCCchh
Q 033920 64 FQRLLVTRTLKLKKLGIPCKH 84 (109)
Q Consensus 64 w~~Lf~~~S~~LKelGIp~r~ 84 (109)
|+-++.-=...|+|+|||..+
T Consensus 82 Y~~~lqElkPtl~ELGI~t~E 102 (109)
T 1v54_E 82 YPYVIQELRPTLNELGISTPE 102 (109)
T ss_dssp HHHHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHhhHHHHhCCCCHH
Confidence 788888889999999998764
No 75
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=33.06 E-value=31 Score=23.52 Aligned_cols=27 Identities=37% Similarity=0.580 Sum_probs=18.2
Q ss_pred hccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCCc
Q 033920 46 IGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIPC 82 (109)
Q Consensus 46 IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp~ 82 (109)
|| ||.+-.+.+++ |.++++ |++.||..
T Consensus 87 IG-G~Ddl~~l~~~--GeL~~l-------L~~~Gi~~ 113 (118)
T 2wul_A 87 VG-GCDILLQMHQN--GDLVEE-------LKKLGIHS 113 (118)
T ss_dssp EE-CHHHHHHHHHH--THHHHH-------HHHTTCCC
T ss_pred EC-CHHHHHHHHHC--CCHHHH-------HHHcCCcc
Confidence 44 67766666666 666666 67888854
No 76
>1dlw_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.54A {Paramecium caudatum} SCOP: a.1.1.1 PDB: 1uvy_A*
Probab=31.24 E-value=47 Score=21.38 Aligned_cols=38 Identities=11% Similarity=0.115 Sum_probs=30.9
Q ss_pred hhHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhcc
Q 033920 62 GDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGL 99 (109)
Q Consensus 62 gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~Gl 99 (109)
..++..+..=...|++.|+|...+..++...+..+..+
T Consensus 76 ~~f~~wl~~~~~al~~~~~~~~~~~~~~~~~~~~a~~i 113 (116)
T 1dlw_A 76 AQFTTVIGHLRSALTGAGVAAALVEQTVAVAETVRGDV 113 (116)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHH
Confidence 34666666677889999999999999999998887644
No 77
>1t07_A Hypothetical UPF0269 protein PA5148; structural genomics, APC5047, conserved hypothetical protein, PSI, protein structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa} SCOP: d.279.1.1
Probab=30.02 E-value=40 Score=23.18 Aligned_cols=50 Identities=12% Similarity=0.292 Sum_probs=36.3
Q ss_pred hhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCC---CchhhhHHhhhhHhhhhcc
Q 033920 45 GIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGI---PCKHRKLILKHTHKYRLGL 99 (109)
Q Consensus 45 ~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGI---p~r~RKyIL~~~ekyR~Gl 99 (109)
.+|+.+-+.++| + -|+.=+.-.+.-.-|+.+ .+++|+||-.+.++|=-|.
T Consensus 27 elGkrIy~~VSk-e----AW~~W~~~QTMLINE~rLnm~d~~aRk~L~~qMekFff~~ 79 (94)
T 1t07_A 27 AKGEDIYNNVSR-K----AWDEWQKHQTMLINERRLNMMNAEDRKFLQQEMDKFLSGE 79 (94)
T ss_dssp HHHHHHHHHCBH-H----HHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHhH-H----HHHHHHHhhHhHhhhccCCCCCHHHHHHHHHHHHHHhcCC
Confidence 345555555555 2 277777777777778776 8999999999999996654
No 78
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.02 E-value=40 Score=23.10 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=17.8
Q ss_pred HHHHhcCC-CchhhhHHhhhhHh
Q 033920 73 LKLKKLGI-PCKHRKLILKHTHK 94 (109)
Q Consensus 73 ~~LKelGI-p~r~RKyIL~~~ek 94 (109)
..||+.|+ .++||+.||.....
T Consensus 16 ~~l~~~g~r~T~qR~~IL~~l~~ 38 (150)
T 2xig_A 16 MSIKKNGLKNSKQREEVVSVLYR 38 (150)
T ss_dssp HHHHHCC--CHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHh
Confidence 35899999 99999999998753
No 79
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=29.86 E-value=31 Score=25.64 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=17.8
Q ss_pred HHHHhhhchHHHHhcCCCchh
Q 033920 64 FQRLLVTRTLKLKKLGIPCKH 84 (109)
Q Consensus 64 w~~Lf~~~S~~LKelGIp~r~ 84 (109)
|+-+++-=...|+|+|||..+
T Consensus 125 Y~y~lqElkPtl~ELGI~t~E 145 (152)
T 2y69_E 125 YPYVIQELRPTLNELGISTPE 145 (152)
T ss_dssp HHHHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHhhHHHHhCCCCHH
Confidence 777888888999999998764
No 80
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=29.51 E-value=46 Score=25.60 Aligned_cols=38 Identities=8% Similarity=0.081 Sum_probs=32.8
Q ss_pred hhhhhhhHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhcc
Q 033920 57 LESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGL 99 (109)
Q Consensus 57 fes~~gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~Gl 99 (109)
|++ ++.|..++..+|++.|+.-| -+||..-++....|.
T Consensus 158 fPt----pe~la~~~~e~L~~~g~g~R-a~~I~~~A~~i~~g~ 195 (290)
T 3i0w_A 158 FPT----VDKLHEFTEKDFEECTAGFR-AKYLKDTVDRIYNGE 195 (290)
T ss_dssp CCC----HHHHTTCCHHHHHHTTCGGG-HHHHHHHHHHHHTTS
T ss_pred CCc----HHHHHCCCHHHHHHcCCchH-HHHHHHHHHHHHhCC
Confidence 566 99999999999999999765 789999998888764
No 81
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=29.27 E-value=86 Score=22.44 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=36.7
Q ss_pred HHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhc-CCCchhhhHHhhhh
Q 033920 40 PEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKL-GIPCKHRKLILKHT 92 (109)
Q Consensus 40 ~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKel-GIp~r~RKyIL~~~ 92 (109)
...|..|..--..-|.++-+.+|++++++.++..+|.+. ||..+.-+.|..+-
T Consensus 161 ~~~L~~i~gVg~~~a~~Ll~~fgs~~~l~~a~~e~L~~v~GiG~~~a~~i~~~~ 214 (219)
T 2bgw_A 161 LYILQSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKIL 214 (219)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHH
Confidence 345666633334556666677778999999999999876 89777666665543
No 82
>2doq_D SFI1P; centrin, CDC31P, spindle POLE BODY, centrosome, cell cycle; 3.00A {Saccharomyces cerevisiae}
Probab=28.74 E-value=12 Score=25.93 Aligned_cols=15 Identities=7% Similarity=-0.035 Sum_probs=12.9
Q ss_pred hhhhHHhhhhHhhhh
Q 033920 83 KHRKLILKHTHKYRL 97 (109)
Q Consensus 83 r~RKyIL~~~ekyR~ 97 (109)
=+|||+++|.++||.
T Consensus 20 v~~K~f~rW~~ky~~ 34 (94)
T 2doq_D 20 VQEAVFYIWSDKTLK 34 (94)
T ss_dssp HHHHHHHHHCCCCCT
T ss_pred HHHHHHHHHHHHHHH
Confidence 479999999999873
No 83
>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s
Probab=28.62 E-value=12 Score=27.81 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=0.0
Q ss_pred hHHHHhhhchHHHHhcCCCchhhhHH
Q 033920 63 DFQRLLVTRTLKLKKLGIPCKHRKLI 88 (109)
Q Consensus 63 dw~~Lf~~~S~~LKelGIp~r~RKyI 88 (109)
|+++|+.++.++|-++ +|++|||.+
T Consensus 30 ~ld~Ll~ms~eel~~L-~~aR~RR~l 54 (154)
T 3iz6_R 30 DLDALLDMSTDDLVQL-FPARARRRF 54 (154)
T ss_dssp --------------------------
T ss_pred cHHHHHhCCHHHHHHH-ccHHHhhhh
Confidence 4788888888887665 588888854
No 84
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.53 E-value=37 Score=23.02 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=18.9
Q ss_pred HHHHhcCC-CchhhhHHhhhhHh
Q 033920 73 LKLKKLGI-PCKHRKLILKHTHK 94 (109)
Q Consensus 73 ~~LKelGI-p~r~RKyIL~~~ek 94 (109)
..||+.|+ ..+||+.||.....
T Consensus 11 ~~l~~~g~r~T~qR~~Il~~L~~ 33 (145)
T 2fe3_A 11 ETLKETGVRITPQRHAILEYLVN 33 (145)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHh
Confidence 35899999 99999999998754
No 85
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=28.35 E-value=31 Score=23.66 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=18.8
Q ss_pred HHHHhcCC-CchhhhHHhhhhHh
Q 033920 73 LKLKKLGI-PCKHRKLILKHTHK 94 (109)
Q Consensus 73 ~~LKelGI-p~r~RKyIL~~~ek 94 (109)
..||+.|+ .++||..||.....
T Consensus 6 ~~l~~~g~r~T~qR~~Il~~L~~ 28 (150)
T 2w57_A 6 QALKDAGLKVTLPRLKILEVLQQ 28 (150)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHh
Confidence 35899999 99999999998754
No 86
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=28.08 E-value=42 Score=25.72 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=30.4
Q ss_pred hhhhhhhHHHHhhhchHHHHhcCCCchhhhHHhhhhHh
Q 033920 57 LESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHK 94 (109)
Q Consensus 57 fes~~gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ek 94 (109)
|++ ++.|..++..+|+..|++-+--+||..-++.
T Consensus 161 fPt----p~~la~~~~~~Lr~~G~~~rKa~~i~~~A~~ 194 (295)
T 2jhn_A 161 FPT----QEAILKAGVEGLRECGLSRRKAELIVEIAKE 194 (295)
T ss_dssp CCC----HHHHHHHHHHHHHHTTCCHHHHHHHHHHHTC
T ss_pred CCC----HHHHHcCCHHHHHHcCCCHHHHHHHHHHHHC
Confidence 565 9999999999999999999889999988876
No 87
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=27.94 E-value=64 Score=20.86 Aligned_cols=54 Identities=13% Similarity=0.148 Sum_probs=35.7
Q ss_pred CHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCCchh-hhHHhhhh
Q 033920 38 GIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIPCKH-RKLILKHT 92 (109)
Q Consensus 38 dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp~r~-RKyIL~~~ 92 (109)
....+|..|..=-..-..++-..||+++++.+++-.+|.+. |+.+. =+-|..+-
T Consensus 15 ~~~s~L~~IpGIG~kr~~~LL~~FgSl~~i~~AS~eEL~~v-ig~~~~A~~I~~~l 69 (84)
T 1z00_B 15 GPQDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSI-LGNAANAKQLYDFI 69 (84)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHH-HSCHHHHHHHHHHH
T ss_pred cHHHHHHhCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHH-hCchHHHHHHHHHH
Confidence 34556666643334444555556677999999999999999 86655 45555544
No 88
>2xzm_S RPS15E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_S 3j0o_S 3j0l_S 3j0p_S 3j0q_S
Probab=27.15 E-value=33 Score=25.11 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=27.0
Q ss_pred CCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhh
Q 033920 37 VGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRL 97 (109)
Q Consensus 37 ~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~ 97 (109)
.|+++.|.+--.+++ ++... .++-+|+.++..+=-.+|.-+++... |.-.++.+.
T Consensus 16 ~~l~~L~~~~~~~~~---~~m~~--~~~~~l~~ar~RRSlkKGpfv~~~~L-LkKi~k~~~ 70 (144)
T 2xzm_S 16 KGLEELTALASGSNS---EKLIS--DELAALFDAKTRRRVKRGISEKYAKF-VNKVRRSKE 70 (144)
T ss_dssp TCHHHHHHHHSSTTC---CSSSC--HHHHHHSCHHHHHHHHHHCCSHHHHH-HHHHHHHHH
T ss_pred CcHHHHHhhhccccc---ccCCH--HHHHHHhchhhhhhhhCCCCcccHHH-HHHHHHHhh
Confidence 378888873333344 22221 23555655555544456665554443 333444443
No 89
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=25.63 E-value=40 Score=18.94 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=11.5
Q ss_pred HHHHhhhchHHHHhc
Q 033920 64 FQRLLVTRTLKLKKL 78 (109)
Q Consensus 64 w~~Lf~~~S~~LKel 78 (109)
+++|+.+..++||++
T Consensus 17 feellklheerlkkm 31 (32)
T 1m3w_A 17 FEELLKLHEERLKKM 31 (32)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhc
Confidence 556888888888876
No 90
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=25.63 E-value=41 Score=25.77 Aligned_cols=34 Identities=6% Similarity=0.109 Sum_probs=29.1
Q ss_pred hhHHHHhhhchHHHHh-cCCCchhhhHHhhhhHhh
Q 033920 62 GDFQRLLVTRTLKLKK-LGIPCKHRKLILKHTHKY 95 (109)
Q Consensus 62 gdw~~Lf~~~S~~LKe-lGIp~r~RKyIL~~~eky 95 (109)
-++++|.+++..++++ +|++.++-+-|.+..++|
T Consensus 179 ~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~ 213 (328)
T 3im1_A 179 ETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNY 213 (328)
T ss_dssp CSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_pred CCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhC
Confidence 3599999999999999 699888888888888775
No 91
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=25.13 E-value=60 Score=24.49 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=18.1
Q ss_pred HHHHhhh--------chHHHHh---cCCCchhhhHHh
Q 033920 64 FQRLLVT--------RTLKLKK---LGIPCKHRKLIL 89 (109)
Q Consensus 64 w~~Lf~~--------~S~~LKe---lGIp~r~RKyIL 89 (109)
|+++|.. ++.+||+ .|||..-|..+=
T Consensus 33 W~~~l~~~~~~~~~~~~~~l~~~~~~GIP~~lR~~vW 69 (331)
T 3qye_A 33 WEKMLSTPGRSKIKFDMEKMHSAVGQGVPRHHRGEIW 69 (331)
T ss_dssp HHHHHTCTTGGGCCCCHHHHHHHHHTCCCGGGHHHHH
T ss_pred HHHHhccCCCCcccCCHHHHHHHHHcCCCHHHHHHHH
Confidence 7777743 4466664 599999997653
No 92
>1xs8_A UPF0269 protein YGGX; helix-turn-helix, metal transport; NMR {Salmonella typhimurium} SCOP: d.279.1.1 PDB: 1yhd_A
Probab=24.39 E-value=71 Score=21.76 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=30.0
Q ss_pred HHHHhhhchHHHHhcCC---CchhhhHHhhhhHhhhhcc
Q 033920 64 FQRLLVTRTLKLKKLGI---PCKHRKLILKHTHKYRLGL 99 (109)
Q Consensus 64 w~~Lf~~~S~~LKelGI---p~r~RKyIL~~~ekyR~Gl 99 (109)
|+.=+.-.+.-.-|..+ .+++|+||-.+.++|=-|.
T Consensus 39 W~~W~~~QTmLINE~rLnm~d~~~Rk~L~~qMekFff~~ 77 (91)
T 1xs8_A 39 WAQWQHKQTMLINEKKLNMMNAEHRKLLEQEMVSFLFEG 77 (91)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhhHHHhhhcccCCCCHHHHHHHHHHHHHHHcCC
Confidence 77777777777778776 8999999999999997665
No 93
>3aq9_A Group 1 truncated hemoglobin; 2/2 fold hemoglobin, nitric oxide detoxification, oxygen BIN; HET: HEM; 1.74A {Tetrahymena pyriformis} PDB: 3aq5_A* 3aq6_A* 3aq8_A* 3aq7_A*
Probab=24.12 E-value=74 Score=20.61 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=28.9
Q ss_pred hHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhc
Q 033920 63 DFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLG 98 (109)
Q Consensus 63 dw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~G 98 (109)
.++..+..=...|++.|+|...+..++...+.++.-
T Consensus 82 ~f~~wl~~~~~al~~~~~~~~~~~~~~~~~~~~a~~ 117 (121)
T 3aq9_A 82 HFDAIIENLAATLKELGVTDAVINEAAKVIEHTRKD 117 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 456666666778899999999999999998887754
No 94
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.84 E-value=47 Score=19.80 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=18.0
Q ss_pred HHHHhcCC-CchhhhHHhhhhHh
Q 033920 73 LKLKKLGI-PCKHRKLILKHTHK 94 (109)
Q Consensus 73 ~~LKelGI-p~r~RKyIL~~~ek 94 (109)
..||+.|+ ...+|..||.....
T Consensus 6 ~~l~~~g~~~t~~r~~IL~~l~~ 28 (83)
T 2fu4_A 6 TALKKAGLKVTLPRLKILEVLQE 28 (83)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHHHHHHHHHHh
Confidence 35889998 88899999988754
No 95
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=23.73 E-value=37 Score=18.33 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=14.4
Q ss_pred cCCCchhhhHHhhhhHh
Q 033920 78 LGIPCKHRKLILKHTHK 94 (109)
Q Consensus 78 lGIp~r~RKyIL~~~ek 94 (109)
.|+..+.||.|-+|-.+
T Consensus 2 rgltsrdrrriarwekr 18 (26)
T 1hji_B 2 RGLTSRDRRRIARWEKR 18 (26)
T ss_dssp CSSCHHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHH
Confidence 57888999999999754
No 96
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=23.10 E-value=89 Score=26.94 Aligned_cols=57 Identities=18% Similarity=0.262 Sum_probs=40.6
Q ss_pred cCCHHHHHhhhc-cchhHH-HHhhhhhhhhHHHHhhhchHHHHhc-CCCchhhhHHhhhh
Q 033920 36 KVGIPEFLNGIG-KGVETH-SAKLESEIGDFQRLLVTRTLKLKKL-GIPCKHRKLILKHT 92 (109)
Q Consensus 36 ~~dV~tFL~~IG-Rg~~eh-a~Kfes~~gdw~~Lf~~~S~~LKel-GIp~r~RKyIL~~~ 92 (109)
..++..||..+| |++=+. |..+.+.+++|++|..++-++|.+. ||-+..=..|..|-
T Consensus 505 ~~~l~r~l~aLGI~~vG~~~a~~La~~f~sl~~l~~a~~e~l~~i~giG~~~A~si~~ff 564 (586)
T 4glx_A 505 ETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFF 564 (586)
T ss_dssp BCCHHHHHHHTTCTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCchhHHHHHHHHHHcCCHHHHHccCHHHHhcCCCccHHHHHHHHHHH
Confidence 367889998877 443333 3344555667999999999999887 89766666777664
No 97
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=23.04 E-value=91 Score=25.72 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=36.8
Q ss_pred HHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhc-CCCchhhhHH
Q 033920 42 FLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKL-GIPCKHRKLI 88 (109)
Q Consensus 42 FL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKel-GIp~r~RKyI 88 (109)
.|..|.|-=...++++-+.+|+.+++++++-.+|.+. ||-.+.=|.|
T Consensus 316 iLs~IPrl~~~iae~Lv~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~I 363 (377)
T 3c1y_A 316 LLKTVARIPLSIGYNVVRMFKTLDQISKASVEDLKKVEGIGEKRARAI 363 (377)
T ss_dssp HHHHTSCCCHHHHHHHHHHHCSHHHHTTCCHHHHTTSTTCCHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHHhCCHHHHHhCCHHHHHhccCccHHHHHHH
Confidence 7777777777777888888888999999999999987 8944433333
No 98
>1dly_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.80A {Chlamydomonas eugametos} SCOP: a.1.1.1 PDB: 1uvx_A*
Probab=22.64 E-value=82 Score=22.37 Aligned_cols=52 Identities=21% Similarity=0.260 Sum_probs=37.2
Q ss_pred ccchh-HHHHh---hhhhhhhHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhccc
Q 033920 47 GKGVE-THSAK---LESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLW 100 (109)
Q Consensus 47 GRg~~-eha~K---fes~~gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~Gl~ 100 (109)
|+.+. .|+.- +.. ..++..+..=...|.+.|+|...+..++...+.++.-..
T Consensus 104 g~~m~~~H~~l~~~I~~--~~fd~Wl~~~~~aL~e~~~~~~~~~~l~~~l~~~a~~mv 159 (164)
T 1dly_A 104 GKDMRTAHKDLVPHLSD--VHFQAVARHLSDTLTELGVPPEDITDAMAVVASTRTEVL 159 (164)
T ss_dssp SCCHHHHHTTCSSCCCH--HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHT
T ss_pred cCcHHHHHHhhcCCCCH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 44555 55543 111 346666667778899999999999999999998876543
No 99
>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure INIT PSI, midwest center for structural genomics center, MCSG; 1.85A {Archaeoglobus fulgidus} SCOP: a.60.4.3 c.52.1.30
Probab=21.81 E-value=79 Score=23.64 Aligned_cols=31 Identities=16% Similarity=0.357 Sum_probs=25.4
Q ss_pred HHhhhchHHHHhcCCCchhhhHHhhhhHhhh
Q 033920 66 RLLVTRTLKLKKLGIPCKHRKLILKHTHKYR 96 (109)
Q Consensus 66 ~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR 96 (109)
+|..++...|.++||+.+.++-||.-.++.-
T Consensus 166 ~~~~~~~~~l~~~gi~~~~~~~i~~~~~~l~ 196 (199)
T 1y88_A 166 DVVSAGEEKLREIGLSAKKAREVIAEAKKVI 196 (199)
T ss_dssp HHHHHCHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hhhhcChHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 4556677889999999999999998887653
No 100
>2gkm_A TRHBN, hemoglobin-like protein HBN, flavohemoglobin; truncated hemoglobin, mutant, oxygen storage/transport complex; HET: HEM; 1.73A {Mycobacterium tuberculosis} PDB: 1idr_A* 1rte_A* 1s56_A* 1s61_A* 2gl3_A* 2gln_A* 2gkn_A*
Probab=21.79 E-value=80 Score=21.13 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=38.0
Q ss_pred ccch-hHHHHhhhhhhhhHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhccccc
Q 033920 47 GKGV-ETHSAKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLWRP 102 (109)
Q Consensus 47 GRg~-~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~Gl~~P 102 (109)
|+.+ ..|+.- .=.-..++..+..=...|.+.|+|...+..++...+..+.-+...
T Consensus 74 g~~m~~~H~~~-~I~~~~fd~wl~~l~~al~e~~~~~~~~~~~~~~~~~~a~~~v~~ 129 (136)
T 2gkm_A 74 GAPMKQVHQGR-GITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVDVTSG 129 (136)
T ss_dssp SCCHHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHC--
T ss_pred CCCHHHHHcCC-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4555 466542 100034666666667788999999999999999999988877663
No 101
>2rp5_A Putative uncharacterized protein CEP-1; oligomerization domain, SAM domain, transcription; NMR {Caenorhabditis elegans}
Probab=21.29 E-value=1.3e+02 Score=21.90 Aligned_cols=58 Identities=26% Similarity=0.413 Sum_probs=43.0
Q ss_pred CCHHHHHhhhccchhHHHHhhhhh----hhhHHHHhhhchHHHHhcCCC-chhhhHHhhhhHhhh
Q 033920 37 VGIPEFLNGIGKGVETHSAKLESE----IGDFQRLLVTRTLKLKKLGIP-CKHRKLILKHTHKYR 96 (109)
Q Consensus 37 ~dV~tFL~~IGRg~~eha~Kfes~----~gdw~~Lf~~~S~~LKelGIp-~r~RKyIL~~~ekyR 96 (109)
-.+|.||..||-|.. ++.|... .+|..+-|+-.+....-.||+ .+--||-=-+.+=||
T Consensus 65 d~iEkFla~vg~g~d--~d~Fr~~Gi~TM~Dl~k~Fe~~~~iFE~IGiDssKleKYYd~FL~yyR 127 (136)
T 2rp5_A 65 EGLERFLTAIKAGHD--SVLFNANGIYTMGDMIREFEKHNDIFERIGIDSSKLSKYYEAFLSFYR 127 (136)
T ss_dssp TCSHHHHHHTTCTTT--HHHHHHHTCCSTTHHHHHHHHTSCHHHHHTCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcch--HHHHHHccceeHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 579999999995543 5666543 389999999999999999995 456666555554444
No 102
>2bkm_A Truncated hemoglobin from geobacillus stearothermophilus; hypothetical protein, oxygen transport, transport, oxygen storage; HET: HEM; 1.5A {Geobacillus stearothermophilus}
Probab=20.60 E-value=1.3e+02 Score=19.71 Aligned_cols=39 Identities=8% Similarity=0.054 Sum_probs=31.6
Q ss_pred hhHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhccc
Q 033920 62 GDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLW 100 (109)
Q Consensus 62 gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~Gl~ 100 (109)
..++..+..=...|.+.|+|...+..++...+..+....
T Consensus 83 ~~fd~wl~~~~~al~e~~~~~~~~~~~~~~~~~~a~~m~ 121 (128)
T 2bkm_A 83 KRAEAWLACMRAAMDEIGLSGPAREQFYHRLVLTAHHMV 121 (128)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 346666666677889999999999999999998887654
No 103
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=20.26 E-value=22 Score=27.30 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=0.0
Q ss_pred HhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCCchhhhHHhhhh
Q 033920 43 LNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHT 92 (109)
Q Consensus 43 L~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ 92 (109)
...||... +.++-+.+|++++++.++-++|.+.||..+.=+.|..+-
T Consensus 178 IpGIG~k~---ak~Ll~~FGSl~~i~~As~eeL~~VGIG~~~A~~I~~~f 224 (226)
T 3c65_A 178 IPGVGEKR---KKALLNYFGSVKKMKEATVEELQRANIPRAVAEKIYEKL 224 (226)
T ss_dssp --------------------------------------------------
T ss_pred cCCCCHHH---HHHHHHHhCCHHHHHhCCHHHHHHcCCCHHHHHHHHHHh
Confidence 34455333 344555567799999999999988899776666665543
No 104
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=20.18 E-value=90 Score=23.24 Aligned_cols=60 Identities=18% Similarity=0.286 Sum_probs=35.6
Q ss_pred HHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhcccccCC
Q 033920 39 IPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLWRPRA 104 (109)
Q Consensus 39 V~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~Gl~~P~g 104 (109)
+-.||+.+|+.+..-.. .. ..+.+|..=..-+++..++.|.|-.|..-. ..|+.-|.|+.
T Consensus 186 l~~lL~tvG~~L~~~~~--~~---~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~-dLR~~~W~~~~ 245 (260)
T 1hu3_A 186 LCRLLTTIGKDLDFEKA--KP---RMDQYFNQMEKIVKERKTSSRIRFMLQDVI-DLRLCNWVSRR 245 (260)
T ss_dssp HHHHHHHHHHHHCCTTT--HH---HHHHHHHHHHHHHHSCSSCHHHHHHHHHHH-HHHHTTTCC--
T ss_pred HHHHHHHHHHHHhCccc--HH---HHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-HHHHcCCCCCc
Confidence 34678888877654111 11 244555444444566778888776555554 67999998864
No 105
>2bmm_A Thermostable hemoglobin from thermobifida fusca; bacterial hemoglobin, thermostable protein, oxygen storage/transport; HET: HEM; 2.48A {Thermobifida fusca}
Probab=20.05 E-value=1.1e+02 Score=19.76 Aligned_cols=38 Identities=11% Similarity=0.153 Sum_probs=30.0
Q ss_pred hhHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhcc
Q 033920 62 GDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGL 99 (109)
Q Consensus 62 gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~Gl 99 (109)
..++..+..=...|.+.|+|...+..++...+..+...
T Consensus 81 ~~f~~wl~~~~~al~e~~~~~~~~~~~~~~~~~~a~~m 118 (123)
T 2bmm_A 81 EERDRWLTHMRAAVDDLALPAHLEQQLWEYLVYAAYAM 118 (123)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 34666666667788999999999999999888776544
Done!