BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033922
MGASMGMGFMAVFAVSGSVVLVASQVHKRLLSDFMKKIESEICGPEKYHEKKRVRFADDV
VEPSGNNKEYRKRNSMSKADEFVRMPLNRQILYKGMIQNRTLQSQNCM

High Scoring Gene Products

Symbol, full name Information P value
AT3G52360 protein from Arabidopsis thaliana 3.9e-21
AT2G35850 protein from Arabidopsis thaliana 5.3e-17
AT1G52565 protein from Arabidopsis thaliana 5.0e-05
AT3G15760 protein from Arabidopsis thaliana 0.00035

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033922
        (108 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2100559 - symbol:AT3G52360 "AT3G52360" species...   248  3.9e-21   1
TAIR|locus:2039285 - symbol:AT2G35850 "AT2G35850" species...   209  5.3e-17   1
TAIR|locus:504956218 - symbol:AT1G52565 "AT1G52565" speci...    96  5.0e-05   1
TAIR|locus:2093277 - symbol:AT3G15760 "AT3G15760" species...    88  0.00035   1


>TAIR|locus:2100559 [details] [associations]
            symbol:AT3G52360 "AT3G52360" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0080167
            "response to karrikin" evidence=IEP] EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0080167 EMBL:AL132972 EMBL:AY063823
            EMBL:AY091279 EMBL:AY087074 IPI:IPI00528027 PIR:T46106
            RefSeq:NP_566965.1 UniGene:At.27187 EnsemblPlants:AT3G52360.1
            GeneID:824401 KEGG:ath:AT3G52360 TAIR:At3g52360 eggNOG:euNOG24381
            HOGENOM:HOG000006160 InParanoid:Q9FT46 OMA:KVRFAAD PhylomeDB:Q9FT46
            ProtClustDB:CLSN2917421 ArrayExpress:Q9FT46 Genevestigator:Q9FT46
            Uniprot:Q9FT46
        Length = 86

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 54/79 (68%), Positives = 62/79 (78%)

Query:     7 MGFMAVFAVSGSVVLVASQVHKRLLSDFMKKIESEICGPEKYHEKKRVRFADDVVEPSGN 66
             +GFMAVFAVSGSVV +ASQ HKRLLSD+M K E EI   +K   KK+VRFA DVVEPSGN
Sbjct:     5 LGFMAVFAVSGSVVFLASQFHKRLLSDYMDKFEFEIRAQKKMVMKKKVRFAADVVEPSGN 64

Query:    67 NKEYRKRNSMSKADEFVRM 85
             NKEYR+R+S SKA    +M
Sbjct:    65 NKEYRRRHS-SKAKSNSKM 82


>TAIR|locus:2039285 [details] [associations]
            symbol:AT2G35850 "AT2G35850" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002685
            GenomeReviews:CT485783_GR EMBL:AC007017 UniGene:At.14226
            HOGENOM:HOG000006160 IPI:IPI00545258 PIR:G84773 RefSeq:NP_181129.1
            UniGene:At.75613 PaxDb:Q9SJ65 PRIDE:Q9SJ65
            EnsemblPlants:AT2G35850.1 GeneID:818158 KEGG:ath:AT2G35850
            TAIR:At2g35850 eggNOG:NOG318720 InParanoid:Q9SJ65 OMA:MESSIGF
            PhylomeDB:Q9SJ65 ProtClustDB:CLSN2683811 ArrayExpress:Q9SJ65
            Genevestigator:Q9SJ65 Uniprot:Q9SJ65
        Length = 80

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 45/77 (58%), Positives = 58/77 (75%)

Query:     7 MGFMAVFAVSGSVVLVASQVHKRLLSDFMKKIESEICGPEKYHEKKRVRFADDVVEPSGN 66
             +GFM VFAVSGSVVL+A+Q+HKRLLS +M K+E      E+  +KK+V FA+D+VEPSGN
Sbjct:     5 IGFMTVFAVSGSVVLLAAQLHKRLLSGYMDKLEPPT--KERKKKKKKVSFAEDMVEPSGN 62

Query:    67 NKEYRK--RNSMSKADE 81
             N+EYR+  R S    DE
Sbjct:    63 NEEYRRSFRKSSKLEDE 79


>TAIR|locus:504956218 [details] [associations]
            symbol:AT1G52565 "AT1G52565" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:BT029312
            IPI:IPI00520949 RefSeq:NP_683424.2 UniGene:At.45208
            EnsemblPlants:AT1G52565.1 GeneID:841688 KEGG:ath:AT1G52565
            TAIR:At1g52565 eggNOG:NOG260197 HOGENOM:HOG000234913
            InParanoid:A0JPU2 OMA:RIALYNG PhylomeDB:A0JPU2
            ProtClustDB:CLSN2917139 Genevestigator:A0JPU2 Uniprot:A0JPU2
        Length = 129

 Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 31/104 (29%), Positives = 56/104 (53%)

Query:    12 VFAVSGSVVLVASQVHKRLLSD--FMKK-IESEICGPEKYHEKKRVRFADDVVEPSGNNK 68
             VF+ +   + ++ Q      SD   ++  + SE    ++ ++KK+V+FA++V E  GN +
Sbjct:    18 VFSSTALFLAISRQFSGNQTSDQQILRSCLSSEEKKKQRKNKKKKVKFAENVKETKGNGE 77

Query:    69 EYRKRN-------SMSKADE---FVR--MPLNRQILYKGMIQNR 100
             EYRK++        M K ++     R  MP NR  LY G++++R
Sbjct:    78 EYRKKSLRRIVPEQMIKPEKTGSVCRNDMPANRIALYNGILRDR 121


>TAIR|locus:2093277 [details] [associations]
            symbol:AT3G15760 "AT3G15760" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009646 "response to absence
            of light" evidence=RCA] EMBL:CP002686 GenomeReviews:BA000014_GR
            EMBL:AB017071 HOGENOM:HOG000234913 ProtClustDB:CLSN2917139
            EMBL:AY088600 EMBL:BT025603 IPI:IPI00532579 RefSeq:NP_566525.1
            UniGene:At.38997 STRING:Q9LW03 EnsemblPlants:AT3G15760.1
            GeneID:820819 KEGG:ath:AT3G15760 TAIR:At3g15760 eggNOG:NOG255689
            InParanoid:Q9LW03 OMA:LFLAMAR PhylomeDB:Q9LW03
            Genevestigator:Q9LW03 Uniprot:Q9LW03
        Length = 135

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 25/63 (39%), Positives = 34/63 (53%)

Query:    52 KRVRFADDVVEPSGNNKEYRKR--NSMS---------KADEFVR---MPLNRQILYKGMI 97
             K+VRFAD+V +  GN +EYR+R  N  S         K     R   MP NR  LY G++
Sbjct:    65 KKVRFADNVKDTKGNGEEYRRRELNRKSVPKPVTKPGKTGSMCRISTMPANRMALYNGIL 124

Query:    98 QNR 100
             ++R
Sbjct:   125 RDR 127


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.132   0.371    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      108       108   0.00091  102 3  11 22  0.40    30
                                                     29  0.40    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  527 (56 KB)
  Total size of DFA:  105 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.80u 0.16s 12.96t   Elapsed:  00:00:01
  Total cpu time:  12.80u 0.16s 12.96t   Elapsed:  00:00:01
  Start:  Fri May 10 08:31:33 2013   End:  Fri May 10 08:31:34 2013

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