BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033922
         (108 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XI8|A Chain A, Molybdenum Cofactor Biosynthesis Protein From Pyrococcus
           Furiosus Pfu-1657500-001
 pdb|1XI8|B Chain B, Molybdenum Cofactor Biosynthesis Protein From Pyrococcus
           Furiosus Pfu-1657500-001
          Length = 403

 Score = 26.6 bits (57), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 12  VFAVSGSVVLVASQVHKRLLSDFMKKIESEICGPEKYHEKKRVRFADDV 60
           VF +SG  V V +Q H      F+K   +++ G + Y  K R    DDV
Sbjct: 300 VFVMSGYPVAVFTQFHL-----FVKHALAKLVGAKDYEVKVRAVLEDDV 343


>pdb|3BCY|A Chain A, Crystal Structure Of Yer067w
          Length = 155

 Score = 25.4 bits (54), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 25  QVHKRLLSDFMKKIESEICGPE-KYHEKKRVRFADDVVEPSGNNKEYRKR 73
            +H+ +    +K I+  +  PE K+HEK +    D +    G   EY  R
Sbjct: 77  HLHQHIEKHLLKDIKQAVRKPELKFHEKSKEETFDKITWHYGEETEYHGR 126


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.132    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,790,803
Number of Sequences: 62578
Number of extensions: 96562
Number of successful extensions: 162
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 7
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)