Query 033922
Match_columns 108
No_of_seqs 50 out of 52
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 13:01:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jp3_A FXYD domain-containing 53.9 8.3 0.00029 24.9 2.3 19 6-24 21-39 (67)
2 2jo1_A Phospholemman; FXYD1, N 53.8 8.4 0.00029 25.2 2.4 19 6-24 20-38 (72)
3 2zxe_G FXYD10, phospholemman-l 50.0 9.5 0.00033 25.0 2.2 19 6-24 23-41 (74)
4 3tj5_B Metavinculin, SCA-famil 35.0 20 0.00069 19.3 1.6 16 8-23 6-21 (27)
5 3v4y_B Nuclear inhibitor of pr 32.3 13 0.00045 23.6 0.7 17 48-64 41-59 (62)
6 3n2f_G Na+/K+ ATPase gamma sub 29.8 16 0.00055 20.1 0.7 18 6-23 14-31 (31)
7 3arc_L Photosystem II reaction 18.7 42 0.0014 19.2 1.0 14 84-97 9-22 (37)
8 2jrp_A Putative cytoplasmic pr 17.2 37 0.0013 22.3 0.6 10 49-58 61-70 (81)
9 1afo_A Glycophorin A; integral 16.2 1.1E+02 0.0038 17.7 2.5 19 9-27 17-35 (40)
10 3b8e_G Na+/K+ ATPase gamma sub 15.2 5.4 0.00019 21.8 -3.3 18 6-23 8-25 (29)
No 1
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=53.85 E-value=8.3 Score=24.85 Aligned_cols=19 Identities=16% Similarity=0.461 Sum_probs=16.4
Q ss_pred hHHHHHHHHhhhhhhhhhh
Q 033922 6 GMGFMAVFAVSGSVVLVAS 24 (108)
Q Consensus 6 glg~~tamAvSgsvvlla~ 24 (108)
||.|++++-+-|-+||+|-
T Consensus 21 GLifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 21 GLIFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHcC
Confidence 7889999999998888875
No 2
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=53.80 E-value=8.4 Score=25.17 Aligned_cols=19 Identities=11% Similarity=0.438 Sum_probs=16.3
Q ss_pred hHHHHHHHHhhhhhhhhhh
Q 033922 6 GMGFMAVFAVSGSVVLVAS 24 (108)
Q Consensus 6 glg~~tamAvSgsvvlla~ 24 (108)
||.|++++-+-|-+||++-
T Consensus 20 GLifA~vLfi~GI~iilS~ 38 (72)
T 2jo1_A 20 GLVIAGILFILGILIVLSR 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcC
Confidence 7889999999998888874
No 3
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=49.98 E-value=9.5 Score=25.02 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=15.7
Q ss_pred hHHHHHHHHhhhhhhhhhh
Q 033922 6 GMGFMAVFAVSGSVVLVAS 24 (108)
Q Consensus 6 glg~~tamAvSgsvvlla~ 24 (108)
||.|++++-+-|-+||+|-
T Consensus 23 GLifA~vLfi~GI~iilS~ 41 (74)
T 2zxe_G 23 GLIVAAVLCVIGIIILLAG 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred cchhHHHHHHHHHHHHHcC
Confidence 7889999999998888763
No 4
>3tj5_B Metavinculin, SCA-family protein; cytoskeleton, epidemic typhus, spotted fever, alpha-HE bundle domain, protein-protein interactions; 1.99A {Rickettsia rickettsii}
Probab=35.04 E-value=20 Score=19.30 Aligned_cols=16 Identities=31% Similarity=0.243 Sum_probs=13.0
Q ss_pred HHHHHHHhhhhhhhhh
Q 033922 8 GFMAVFAVSGSVVLVA 23 (108)
Q Consensus 8 g~~tamAvSgsvvlla 23 (108)
+|-||.++|||+=-|-
T Consensus 6 vlnAA~~LS~sMQdLL 21 (27)
T 3tj5_B 6 LLNAATALSGSMQYLL 21 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6889999999986553
No 5
>3v4y_B Nuclear inhibitor of protein phosphatase 1; PP1, Ser/Thr phosphatase, NIPP1, IDP, hydrolase; HET: GOL 15P; 2.10A {Homo sapiens}
Probab=32.33 E-value=13 Score=23.62 Aligned_cols=17 Identities=24% Similarity=0.724 Sum_probs=8.8
Q ss_pred cccccceeecc--cccCCC
Q 033922 48 YHEKKRVRFAD--DVVEPS 64 (108)
Q Consensus 48 ~~~KKRVRFAe--DVve~~ 64 (108)
|++++.|.|.+ +|..|+
T Consensus 41 KRk~~~V~F~eeeeIINPE 59 (62)
T 3v4y_B 41 KRKNSRVTFSEDDEIINPE 59 (62)
T ss_dssp ----CCCEECSCCEESCCC
T ss_pred ccccCccccCCcccccCcc
Confidence 34555699987 455554
No 6
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=29.76 E-value=16 Score=20.11 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=13.6
Q ss_pred hHHHHHHHHhhhhhhhhh
Q 033922 6 GMGFMAVFAVSGSVVLVA 23 (108)
Q Consensus 6 glg~~tamAvSgsvvlla 23 (108)
|+.++++.-+.|-++++|
T Consensus 14 GLi~a~vLfi~gi~iils 31 (31)
T 3n2f_G 14 GLIFAALAFIVGLIIILS 31 (31)
T ss_dssp HTTTHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHHhcC
Confidence 666888888888777764
No 7
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=18.71 E-value=42 Score=19.22 Aligned_cols=14 Identities=43% Similarity=0.781 Sum_probs=11.6
Q ss_pred CCCchHHHHHhhhh
Q 033922 84 RMPLNRQILYKGMI 97 (108)
Q Consensus 84 ~MPaNR~aLY~GiL 97 (108)
..-.||--||-|.|
T Consensus 9 ~VELNRTSLy~GLL 22 (37)
T 3arc_L 9 PVELNRTSLYLGLL 22 (37)
T ss_dssp CBCCCHHHHHHHHH
T ss_pred cceechhhHHHHHH
Confidence 35579999999987
No 8
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=17.24 E-value=37 Score=22.29 Aligned_cols=10 Identities=50% Similarity=0.537 Sum_probs=8.4
Q ss_pred ccccceeecc
Q 033922 49 HEKKRVRFAD 58 (108)
Q Consensus 49 ~~KKRVRFAe 58 (108)
++||||+|--
T Consensus 61 iSkkrv~f~~ 70 (81)
T 2jrp_A 61 ISKKRVNFVI 70 (81)
T ss_dssp CCTTSSEEEE
T ss_pred eecceEEEEe
Confidence 6899999964
No 9
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=16.22 E-value=1.1e+02 Score=17.70 Aligned_cols=19 Identities=21% Similarity=0.474 Sum_probs=13.6
Q ss_pred HHHHHHhhhhhhhhhhhhh
Q 033922 9 FMAVFAVSGSVVLVASQVH 27 (108)
Q Consensus 9 ~~tamAvSgsvvlla~~~~ 27 (108)
|....-+=|+++|++||-.
T Consensus 17 ~~vmaGiIG~IllI~y~I~ 35 (40)
T 1afo_A 17 FGVMAGVIGTILLISYGIR 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334457899999999864
No 10
>3b8e_G Na+/K+ ATPase gamma subunit transcript variant A; P-type ATPase, cation pump, membrane protein, hydrolase, ATP-binding, calcium transport; HET: PC1; 3.50A {Sus scrofa} PDB: 3kdp_G*
Probab=15.23 E-value=5.4 Score=21.85 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=12.9
Q ss_pred hHHHHHHHHhhhhhhhhh
Q 033922 6 GMGFMAVFAVSGSVVLVA 23 (108)
Q Consensus 6 glg~~tamAvSgsvvlla 23 (108)
||.|++++-+.|-++++|
T Consensus 8 GLi~a~vlf~~Gi~iilS 25 (29)
T 3b8e_G 8 GLIFAALAFIVGLIIILS 25 (29)
T ss_dssp SSGGGGSSSTTTTTTSSC
T ss_pred cchHHHHHHHHHHHHHHh
Confidence 566777777777777665
Done!