Query 033922
Match_columns 108
No_of_seqs 50 out of 52
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 13:01:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033922.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033922hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ofla_ b.80.1.4 (A:) Chondroi 26.9 11 0.00082 27.5 1.5 19 83-101 461-479 (481)
2 d1b8ta1 g.39.1.3 (A:1-35) Cyst 20.3 13 0.00093 19.7 0.4 12 50-61 13-24 (35)
3 d2jnea1 g.41.18.1 (A:1-71) Hyp 19.2 14 0.0011 22.4 0.6 9 49-57 61-69 (71)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 18.4 21 0.0015 19.1 1.0 14 84-97 9-22 (37)
5 d2e74g1 f.23.26.1 (G:9-35) Pet 17.8 55 0.004 16.1 2.6 17 13-29 7-23 (27)
6 d1h0ha2 c.81.1.1 (A:1-812) Tun 17.8 7.6 0.00055 32.1 -1.4 13 83-95 728-740 (812)
7 d1kqfa2 c.81.1.1 (A:34-850) Fo 16.8 8.3 0.00061 31.8 -1.4 12 84-95 737-748 (817)
8 d1a7ia1 g.39.1.3 (A:8-35) Cyst 14.6 19 0.0014 18.1 0.2 11 51-61 7-17 (28)
9 d2cu8a1 g.39.1.3 (A:8-37) Cyst 9.5 32 0.0023 17.6 0.1 11 51-61 9-19 (30)
10 d1wdka3 c.2.1.6 (A:311-496) Fa 7.4 81 0.0059 20.3 1.5 18 3-20 13-30 (186)
No 1
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]}
Probab=26.92 E-value=11 Score=27.52 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=16.4
Q ss_pred CCCCchHHHHHhhhhhhhh
Q 033922 83 VRMPLNRQILYKGMIQNRT 101 (108)
Q Consensus 83 ~~MPaNR~aLY~GiLrdR~ 101 (108)
..++++|.|||++|++--+
T Consensus 461 ~~~~~~~~a~~~~~~~~~~ 479 (481)
T d1ofla_ 461 ARLSADRAAKFKAVIKRNK 479 (481)
T ss_dssp SSCCHHHHHHHHHHHHHTS
T ss_pred eccCcchhhhhhHHhhccc
Confidence 4899999999999998644
No 2
>d1b8ta1 g.39.1.3 (A:1-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=20.30 E-value=13 Score=19.74 Aligned_cols=12 Identities=42% Similarity=0.540 Sum_probs=9.9
Q ss_pred cccceeeccccc
Q 033922 50 EKKRVRFADDVV 61 (108)
Q Consensus 50 ~KKRVRFAeDVv 61 (108)
=+|-|-|||+|-
T Consensus 13 c~ktvy~aeevq 24 (35)
T d1b8ta1 13 CQKAVYFAEEVQ 24 (35)
T ss_dssp TCCEECSSCCEE
T ss_pred ccceEeeeeeee
Confidence 468899999884
No 3
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}
Probab=19.23 E-value=14 Score=22.37 Aligned_cols=9 Identities=56% Similarity=0.741 Sum_probs=7.7
Q ss_pred ccccceeec
Q 033922 49 HEKKRVRFA 57 (108)
Q Consensus 49 ~~KKRVRFA 57 (108)
++||||+|-
T Consensus 61 iSKkrv~f~ 69 (71)
T d2jnea1 61 ISKKRVEFV 69 (71)
T ss_dssp ECTTTSEEE
T ss_pred eEeeeEEEE
Confidence 689999993
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=18.35 E-value=21 Score=19.11 Aligned_cols=14 Identities=43% Similarity=0.781 Sum_probs=11.7
Q ss_pred CCCchHHHHHhhhh
Q 033922 84 RMPLNRQILYKGMI 97 (108)
Q Consensus 84 ~MPaNR~aLY~GiL 97 (108)
..-.||--||-|.|
T Consensus 9 ~veLNrtsLy~GlL 22 (37)
T d2axtl1 9 PVELNRTSLYLGLL 22 (37)
T ss_dssp CBCCCHHHHHHHHH
T ss_pred ccccchhhHHHHHH
Confidence 45579999999987
No 5
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=17.85 E-value=55 Score=16.11 Aligned_cols=17 Identities=41% Similarity=0.466 Sum_probs=12.8
Q ss_pred HHhhhhhhhhhhhhhhc
Q 033922 13 FAVSGSVVLVASQVHKR 29 (108)
Q Consensus 13 mAvSgsvvlla~~~~k~ 29 (108)
++--|++.+.+++-.||
T Consensus 7 ~~tl~glf~aayqqykr 23 (27)
T d2e74g1 7 FATLGGLFYAAYQQYKR 23 (27)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 33446788999998888
No 6
>d1h0ha2 c.81.1.1 (A:1-812) Tungsten containing formate dehydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]}
Probab=17.80 E-value=7.6 Score=32.06 Aligned_cols=13 Identities=38% Similarity=0.759 Sum_probs=10.8
Q ss_pred CCCCchHHHHHhh
Q 033922 83 VRMPLNRQILYKG 95 (108)
Q Consensus 83 ~~MPaNR~aLY~G 95 (108)
..=|+||.+|||=
T Consensus 728 ~~wp~n~r~~ynr 740 (812)
T d1h0ha2 728 WAWPVNRRIIYNR 740 (812)
T ss_dssp EETTTTCSSTTGG
T ss_pred ccCcccceeeccc
Confidence 3689999999983
No 7
>d1kqfa2 c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha subunit {Escherichia coli [TaxId: 562]}
Probab=16.79 E-value=8.3 Score=31.84 Aligned_cols=12 Identities=50% Similarity=0.963 Sum_probs=10.5
Q ss_pred CCCchHHHHHhh
Q 033922 84 RMPLNRQILYKG 95 (108)
Q Consensus 84 ~MPaNR~aLY~G 95 (108)
.=|+||.+|||=
T Consensus 737 ~wp~n~r~~ynr 748 (817)
T d1kqfa2 737 AWPLNRRVLYNR 748 (817)
T ss_dssp ETTTTCSSTTGG
T ss_pred cccccceeeccc
Confidence 679999999983
No 8
>d1a7ia1 g.39.1.3 (A:8-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=14.62 E-value=19 Score=18.15 Aligned_cols=11 Identities=27% Similarity=0.383 Sum_probs=9.0
Q ss_pred ccceeeccccc
Q 033922 51 KKRVRFADDVV 61 (108)
Q Consensus 51 KKRVRFAeDVv 61 (108)
+|-|-|||.|-
T Consensus 7 ~ktvy~aeevq 17 (28)
T d1a7ia1 7 GRTVYHAEEVQ 17 (28)
T ss_dssp CCBCSSTTEEE
T ss_pred cceEeeeeeee
Confidence 67899999874
No 9
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.53 E-value=32 Score=17.56 Aligned_cols=11 Identities=45% Similarity=0.610 Sum_probs=8.9
Q ss_pred ccceeeccccc
Q 033922 51 KKRVRFADDVV 61 (108)
Q Consensus 51 KKRVRFAeDVv 61 (108)
.|-|-|||-|.
T Consensus 9 ~K~VYfaEk~~ 19 (30)
T d2cu8a1 9 DKTVYFAEKVS 19 (30)
T ss_dssp CCBCCTTTEEE
T ss_pred CCceeeHHhhc
Confidence 57899999774
No 10
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}
Probab=7.40 E-value=81 Score=20.28 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=14.6
Q ss_pred cchhHHHHHHHHhhhhhh
Q 033922 3 ASMGMGFMAVFAVSGSVV 20 (108)
Q Consensus 3 ~s~glg~~tamAvSgsvv 20 (108)
+.||.|+++.+|.+|-=|
T Consensus 13 G~mG~~iA~~~a~~G~~V 30 (186)
T d1wdka3 13 GIMGGGIAYQSASKGTPI 30 (186)
T ss_dssp HHHHHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHHHHhCCCeE
Confidence 578999999999999433
Done!