BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033923
(108 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GWJ6|MUB6_ARATH Membrane-anchored ubiquitin-fold protein 6 OS=Arabidopsis thaliana
GN=MUB6 PE=1 SV=1
Length = 119
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 87/106 (82%), Gaps = 1/106 (0%)
Query: 1 MAGE-DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH 59
MAGE D IELKFRLADG DIGPSK++ + TV+SLKEK+IS+WPK+KEN PKTVN+++LI+
Sbjct: 1 MAGEEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLIN 60
Query: 60 AGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNTHN 105
AGKILE+N T+AESRLPV ELPG ITMH+VLR DKK N
Sbjct: 61 AGKILENNRTLAESRLPVCELPGMIITMHIVLRLPTLDKKSEKLQN 106
>sp|Q9SH14|MUB5_ARATH Membrane-anchored ubiquitin-fold protein 5 OS=Arabidopsis thaliana
GN=MUB5 PE=1 SV=1
Length = 120
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/107 (63%), Positives = 82/107 (76%), Gaps = 2/107 (1%)
Query: 1 MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60
M EDLIELKFRLADG DIGPSK+S TVASLKEKII++WPK+KEN PK +N V+LI+
Sbjct: 1 MGDEDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLING 60
Query: 61 GKILEDNMTIAESR--LPVVELPGTAITMHVVLRPSLPDKKGGNTHN 105
GKILE+N T++E+R + + ELPG TMHVVLRP L +KK N
Sbjct: 61 GKILENNKTLSEARSLITIGELPGIVTTMHVVLRPPLFEKKKEKLQN 107
>sp|Q6Z8K4|MUB3_ORYSJ Membrane-anchored ubiquitin-fold protein 3 OS=Oryza sativa subsp.
japonica GN=MUB3 PE=3 SV=1
Length = 119
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/97 (63%), Positives = 83/97 (85%)
Query: 2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG 61
G++ IE+KFRL DG DIGPSK+ P+TTV++LKE I++RWP++KE PKTVN+++LI+AG
Sbjct: 3 GGKEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLINAG 62
Query: 62 KILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDK 98
+ILE+N T+AESR+PV E+PG ITMHVV+RP PDK
Sbjct: 63 RILENNRTLAESRVPVGEVPGGVITMHVVVRPPQPDK 99
>sp|Q9LSD8|MUB4_ARATH Membrane-anchored ubiquitin-fold protein 4 OS=Arabidopsis
thaliana GN=MUB4 PE=1 SV=1
Length = 120
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 74/92 (80%)
Query: 1 MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60
M EDL+ELKFRL DG+D+GP ++SPT TV+ LKE+I+S WPK+K+ PK+ ++++LI+A
Sbjct: 1 MPEEDLVELKFRLYDGSDVGPFQYSPTATVSMLKERIVSEWPKDKKIVPKSASDIKLINA 60
Query: 61 GKILEDNMTIAESRLPVVELPGTAITMHVVLR 92
GKILE+ T+A+ + P +LP + ITMHVV++
Sbjct: 61 GKILENGKTVAQCKAPFDDLPKSVITMHVVVQ 92
>sp|Q8LCS8|MUB2_ARATH Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis
thaliana GN=MUB2 PE=1 SV=1
Length = 124
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 68/89 (76%)
Query: 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKI 63
+D +E+KFRL DG+DIGP F TTVA+LKE ++++WP++KENGPKTV +V+LI AG+I
Sbjct: 5 KDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLISAGRI 64
Query: 64 LEDNMTIAESRLPVVELPGTAITMHVVLR 92
LE+N T+ + R PV G TMHV+++
Sbjct: 65 LENNKTVGDCRSPVGNFSGAVTTMHVIIQ 93
>sp|Q75GT2|MUB1_ORYSJ Membrane-anchored ubiquitin-fold protein 1 OS=Oryza sativa subsp.
japonica GN=MUB1 PE=3 SV=1
Length = 119
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 76/101 (75%), Gaps = 3/101 (2%)
Query: 1 MAG--EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI 58
M+G ++ E+KFRL DG DIGP ++ +TVA+LKE I+++WPK+KE GP+TVN+++LI
Sbjct: 1 MSGGVQEQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLI 60
Query: 59 HAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKK 99
+AGKILE+N T++E + P+ + G TMHVV+R DK+
Sbjct: 61 NAGKILENNKTLSECKSPICDFSGLT-TMHVVVRAPTSDKQ 100
>sp|Q9MAB9|MUB1_ARATH Membrane-anchored ubiquitin-fold protein 1 OS=Arabidopsis thaliana
GN=MUB1 PE=1 SV=1
Length = 117
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 69/93 (74%)
Query: 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILED 66
+E+KFRL DG+DIGP F TTV++LKE +IS WP+EKENGPKTV V+LI AGK+LE+
Sbjct: 8 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67
Query: 67 NMTIAESRLPVVELPGTAITMHVVLRPSLPDKK 99
+ T+ + R PV L G TMHV+++ + +K+
Sbjct: 68 SKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEKE 100
>sp|Q67UI2|MUB2_ORYSJ Membrane-anchored ubiquitin-fold protein 2 OS=Oryza sativa subsp.
japonica GN=MUB2 PE=2 SV=1
Length = 126
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 71/95 (74%)
Query: 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKIL 64
+ +E++FRL DG+DIGPS TTV +LKE +++RWP+ KE P+TVN+V +I+AG++L
Sbjct: 12 EAVEVRFRLDDGSDIGPSMHDQATTVTALKEFVLARWPQGKEIAPRTVNDVTIINAGQVL 71
Query: 65 EDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKK 99
E+N T+AESR E P ITMHVV+R S P+++
Sbjct: 72 ENNRTLAESRNLAAESPEGPITMHVVVRRSRPERR 106
>sp|Q9SW27|MUB3_ARATH Membrane-anchored ubiquitin-fold protein 3 OS=Arabidopsis
thaliana GN=MUB3 PE=1 SV=1
Length = 118
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 69/99 (69%)
Query: 1 MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60
M E+ I++KFRL DG+DIGP ++S +TV LK++++S WPK K PK +N V+LI +
Sbjct: 1 MPEEESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISS 60
Query: 61 GKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKK 99
GKILE+N T+ + + P ++ G I MHVV++PSL K
Sbjct: 61 GKILENNKTVGQCKTPFGDIAGGVIVMHVVVQPSLAKSK 99
>sp|Q7XRU4|MUB4_ORYSJ Membrane-anchored ubiquitin-fold protein 4 OS=Oryza sativa subsp.
japonica GN=MUB4 PE=2 SV=2
Length = 135
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 70/95 (73%), Gaps = 5/95 (5%)
Query: 10 KFRLADGADIGPSKFSP-TTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNM 68
KFRL DG+DIGP + + TTVA+LK+++++ WPK+K PKT N+V+LI GKILE++
Sbjct: 26 KFRLFDGSDIGPLRCNAVATTVAALKDRVVADWPKDKTIVPKTANDVKLISGGKILENDK 85
Query: 69 TIAESRLPVVELPGTAITMHVVLRPSL----PDKK 99
IA+ R P +LP TAITMHVV++PS PDKK
Sbjct: 86 NIAQCRAPFGDLPSTAITMHVVVQPSSAKSKPDKK 120
>sp|O95164|UBL3_HUMAN Ubiquitin-like protein 3 OS=Homo sapiens GN=UBL3 PE=1 SV=1
Length = 117
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KENGPKTVNNVQLIHAGKI 63
D+I L+ L G FSP + + + + + WP + +E + N ++LI+ G+
Sbjct: 8 DMINLRLILVSGK-TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF 66
Query: 64 LEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNTHN 105
L N+T+ +LP G MH+V R +LP+ N
Sbjct: 67 LHGNVTLGALKLPF----GKTTVMHLVARETLPEPNSQGQRN 104
>sp|Q2TA46|UBL3_BOVIN Ubiquitin-like protein 3 OS=Bos taurus GN=UBL3 PE=3 SV=1
Length = 117
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KENGPKTVNNVQLIHAGKI 63
D+I L+ L G FSP + + + + + WP + +E + N ++LI+ G+
Sbjct: 8 DMINLRLILVSGK-TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF 66
Query: 64 LEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNTHN 105
L N+T+ +LP G MH+V R +LP+ N
Sbjct: 67 LHGNVTLGALKLPF----GKTTVMHLVARETLPEPNSQGQRN 104
>sp|Q5BJT2|UBL3_RAT Ubiquitin-like protein 3 OS=Rattus norvegicus GN=Ubl3 PE=2 SV=1
Length = 117
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KENGPKTVNNVQLIHAGKI 63
D+I L+ L G FSP + + + + + WP + +E + N ++LI+ G+
Sbjct: 8 DMINLRLILVSGK-TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF 66
Query: 64 LEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNTHN 105
L N+T+ +LP G MH+V R +LP+ N
Sbjct: 67 LHGNVTLGALKLPF----GKTTVMHLVARETLPEPNSQGQRN 104
>sp|Q9Z2M6|UBL3_MOUSE Ubiquitin-like protein 3 OS=Mus musculus GN=Ubl3 PE=1 SV=1
Length = 117
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KENGPKTVNNVQLIHAGKI 63
D+I L+ L G FSP + + + + + WP + +E + N ++LI+ G+
Sbjct: 8 DMINLRLILVSGK-TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF 66
Query: 64 LEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNTHN 105
L N+T+ +LP G MH+V R +LP+ N
Sbjct: 67 LHGNVTLGALKLPF----GKTTVMHLVARETLPEPNSQGQRN 104
>sp|P16709|UBIL_NPVAC Ubiquitin-like protein OS=Autographa californica nuclear
polyhedrosis virus GN=V-UBI PE=3 SV=2
Length = 77
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 13/67 (19%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85
P TVA LK+KI +KE P V+ +LI AGK LED+ T+A+ +
Sbjct: 19 PAETVADLKQKI-----ADKEGVP--VDQQRLIFAGKQLEDSKTMADYNIQ------KES 65
Query: 86 TMHVVLR 92
T+H+VLR
Sbjct: 66 TLHMVLR 72
>sp|Q05120|UBIL_NPVOP Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid
polyhedrosis virus GN=V-UBI PE=3 SV=1
Length = 93
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 18/77 (23%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85
P TV +K+KI +KE P V+ +LI+AGK LED T+A+ +
Sbjct: 19 PGDTVGQVKQKI-----ADKEGVP--VDQQRLIYAGKQLEDAQTLADYNIQ------KES 65
Query: 86 TMHVVLRPSLPDKKGGN 102
T+H+VLR +GGN
Sbjct: 66 TLHMVLRL-----RGGN 77
>sp|P48510|DSK2_YEAST Ubiquitin domain-containing protein DSK2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DSK2 PE=1
SV=2
Length = 373
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILED 66
+ L + G D +P +TV KE I K NG V N +LI++GKIL+D
Sbjct: 1 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAI------NKANG-IPVANQRLIYSGKILKD 53
Query: 67 NMTI 70
+ T+
Sbjct: 54 DQTV 57
>sp|Q4KMA2|RD23B_RAT UV excision repair protein RAD23 homolog B OS=Rattus norvegicus
GN=Rad23b PE=1 SV=1
Length = 415
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL 75
P TV +LKEKI S EK V +LI+AGKIL D+ + E ++
Sbjct: 19 PEETVKALKEKIES----EKGKDAFPVAGQKLIYAGKILSDDTALKEYKI 64
>sp|P54727|RD23B_HUMAN UV excision repair protein RAD23 homolog B OS=Homo sapiens
GN=RAD23B PE=1 SV=1
Length = 409
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL 75
P TV +LKEKI S EK V +LI+AGKIL D+ + E ++
Sbjct: 19 PEETVKALKEKIES----EKGKDAFPVAGQKLIYAGKILNDDTALKEYKI 64
>sp|Q29RK4|RD23B_BOVIN UV excision repair protein RAD23 homolog B OS=Bos taurus
GN=RAD23B PE=2 SV=1
Length = 408
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL 75
P TV +LKEKI S EK V +LI+AGKIL D+ + E ++
Sbjct: 19 PDETVRALKEKIES----EKGKDAFPVAGQKLIYAGKILNDDTALKEYKI 64
>sp|P54728|RD23B_MOUSE UV excision repair protein RAD23 homolog B OS=Mus musculus
GN=Rad23b PE=1 SV=2
Length = 416
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL 75
P TV +LKEKI S EK V +LI+AGKIL D+ + E ++
Sbjct: 19 PEETVKALKEKIES----EKGKDAFPVAGQKLIYAGKILSDDTALKEYKI 64
>sp|A3KMV2|RD23A_BOVIN UV excision repair protein RAD23 homolog A OS=Bos taurus
GN=RAD23A PE=2 SV=1
Length = 362
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 23 KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL 75
+ P TV LKEKI EK V +LI+AGKIL D++ I + R+
Sbjct: 18 RMEPDETVKVLKEKI----EAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRI 66
>sp|P54725|RD23A_HUMAN UV excision repair protein RAD23 homolog A OS=Homo sapiens
GN=RAD23A PE=1 SV=1
Length = 363
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 23 KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL 75
+ P TV LKEKI EK V +LI+AGKIL D++ I + R+
Sbjct: 18 RMEPDETVKVLKEKI----EAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRI 66
>sp|P54726|RD23A_MOUSE UV excision repair protein RAD23 homolog A OS=Mus musculus
GN=Rad23a PE=1 SV=2
Length = 363
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 23 KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL 75
+ P TV LKEKI + EK V +LI+AGKIL D++ I E +
Sbjct: 18 RMEPDETVKVLKEKIEA----EKGRDAFPVAGQKLIYAGKILSDDVPIKEYHI 66
>sp|Q12285|MDY2_YEAST Ubiquitin-like protein MDY2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MDY2 PE=1 SV=1
Length = 212
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Query: 24 FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL 75
FSP+ T+ +K+ +IS E ++ ++L+ GK+L DN+ +++ ++
Sbjct: 92 FSPSDTILQIKQHLIS------EEKASHISEIKLLLKGKVLHDNLFLSDLKV 137
>sp|Q3AK05|Y1323_SYNSC UPF0182 protein Syncc9605_1323 OS=Synechococcus sp. (strain CC9605)
GN=Syncc9605_1323 PE=3 SV=1
Length = 914
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 16/55 (29%)
Query: 21 PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL 75
PS+FSPT ++E G T+ NV++ +G +LE N + + R+
Sbjct: 372 PSRFSPT----------------DREEGASTLENVRIWDSGPLLEANRQLQQLRV 410
>sp|P17636|FMO1_RABIT Dimethylaniline monooxygenase [N-oxide-forming] 1 OS=Oryctolagus
cuniculus GN=FMO1 PE=1 SV=3
Length = 535
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 19/85 (22%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85
PT V L K ++ W G + +QL +L D ELPG I
Sbjct: 248 PTPIVTWLVAKKMNSWFNHANYGLVPKDRIQLKEP--VLND------------ELPGRII 293
Query: 86 TMHVVLRPSLPDKKG-----GNTHN 105
T V +RPS+ + K GN HN
Sbjct: 294 TGKVFIRPSIKEVKENSVVFGNAHN 318
>sp|B3EEA0|KATG_CHLL2 Catalase-peroxidase OS=Chlorobium limicola (strain DSM 245 / NBRC
103803) GN=katG PE=3 SV=1
Length = 732
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 56 QLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGG 101
+LI G+I E M I S LP+ EL TA R S DK+GG
Sbjct: 440 ELITEGEIAELKMRILASGLPIPELVSTAWASASTFRGS--DKRGG 483
>sp|B3DXK2|DER_METI4 GTPase Der OS=Methylacidiphilum infernorum (isolate V4) GN=der PE=3
SV=2
Length = 460
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 30 VASLKEKIISRWPKEKEN---GPKT-VNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83
+ L EKI S +E+EN P T + + +AGK N I ESRL V E PGT
Sbjct: 151 INQLLEKIFSLGAEERENPIFAPSTRIAVIGQPNAGKSSLINSLIGESRLVVHEEPGT 208
>sp|Q5ZJI9|UBAC1_CHICK Ubiquitin-associated domain-containing protein 1 OS=Gallus gallus
GN=UBAC1 PE=2 SV=1
Length = 408
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 28 TTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG--KILEDNMTIAESRL 75
TTV LKE+ + PKTV + +LIHA K+L D+ T+ E +
Sbjct: 34 TTVEKLKERCLKHCVPGSLEDPKTVTHHKLIHATSEKVLTDSKTVLEENI 83
>sp|Q2UMR9|IML1_ASPOR Vacuolar membrane-associated protein iml1 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=iml1 PE=3 SV=2
Length = 1824
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 69 TIAESRLPVVELPGTAITMHVVLRPSLPDKKGGN 102
T+ ++ +P +ELP + ++ H+ P LP + N
Sbjct: 1758 TLTDASIPSLELPASVVSHHISPPPGLPSRSSHN 1791
>sp|P62982|RS27A_RAT Ubiquitin-40S ribosomal protein S27a OS=Rattus norvegicus
GN=Rps27a PE=1 SV=2
Length = 156
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 13/67 (19%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85
P+ T+ ++K KI ++KE P + +LI AGK LED T+++ +
Sbjct: 19 PSDTIENVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQ------KES 65
Query: 86 TMHVVLR 92
T+H+VLR
Sbjct: 66 TLHLVLR 72
>sp|P62983|RS27A_MOUSE Ubiquitin-40S ribosomal protein S27a OS=Mus musculus GN=Rps27a
PE=1 SV=2
Length = 156
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 13/67 (19%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85
P+ T+ ++K KI ++KE P + +LI AGK LED T+++ +
Sbjct: 19 PSDTIENVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQ------KES 65
Query: 86 TMHVVLR 92
T+H+VLR
Sbjct: 66 TLHLVLR 72
>sp|P22589|UBIQP_PHYIN Polyubiquitin OS=Phytophthora infestans PE=1 SV=2
Length = 229
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 18/77 (23%)
Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85
P+ ++ ++K+KI ++KE P + +LI AGK LED T+++ +
Sbjct: 171 PSDSIDNVKQKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQ------KES 217
Query: 86 TMHVVLRPSLPDKKGGN 102
T+H+VLR +GGN
Sbjct: 218 TLHLVLRL-----RGGN 229
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,716,154
Number of Sequences: 539616
Number of extensions: 1638097
Number of successful extensions: 3243
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 3107
Number of HSP's gapped (non-prelim): 215
length of query: 108
length of database: 191,569,459
effective HSP length: 76
effective length of query: 32
effective length of database: 150,558,643
effective search space: 4817876576
effective search space used: 4817876576
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)