Query 033923
Match_columns 108
No_of_seqs 114 out of 1038
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:50:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01814 NTGP5 Ubiquitin-like N 100.0 2.9E-28 6.3E-33 165.0 9.4 103 3-105 1-103 (113)
2 PF13881 Rad60-SLD_2: Ubiquiti 99.9 4.4E-27 9.4E-32 159.6 11.4 99 5-103 1-99 (111)
3 cd01807 GDX_N ubiquitin-like d 99.9 4.5E-21 9.9E-26 120.5 8.3 74 7-94 1-74 (74)
4 cd01793 Fubi Fubi ubiquitin-li 99.8 2.5E-20 5.3E-25 117.2 8.4 74 7-96 1-74 (74)
5 cd01790 Herp_N Homocysteine-re 99.8 1.8E-20 4E-25 120.4 7.8 76 6-92 1-79 (79)
6 cd01802 AN1_N ubiquitin-like d 99.8 7.9E-20 1.7E-24 122.4 9.2 78 5-96 26-103 (103)
7 cd01794 DC_UbP_C dendritic cel 99.8 4.8E-20 1E-24 115.5 7.5 70 9-92 1-70 (70)
8 PTZ00044 ubiquitin; Provisiona 99.8 9.6E-20 2.1E-24 114.4 8.4 76 7-96 1-76 (76)
9 cd01797 NIRF_N amino-terminal 99.8 1.1E-19 2.4E-24 116.0 8.2 75 7-95 1-77 (78)
10 cd01810 ISG15_repeat2 ISG15 ub 99.8 1.2E-19 2.7E-24 114.1 7.9 74 9-96 1-74 (74)
11 cd01798 parkin_N amino-termina 99.8 1.9E-19 4.2E-24 111.9 7.6 70 9-92 1-70 (70)
12 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 2.8E-19 6.1E-24 113.0 8.4 71 6-90 1-71 (73)
13 cd01806 Nedd8 Nebb8-like ubiq 99.8 5.2E-19 1.1E-23 110.3 8.7 76 7-96 1-76 (76)
14 cd01803 Ubiquitin Ubiquitin. U 99.8 1.1E-18 2.5E-23 108.8 8.3 76 7-96 1-76 (76)
15 cd01804 midnolin_N Ubiquitin-l 99.8 1.8E-18 3.9E-23 110.2 9.1 75 7-96 2-76 (78)
16 cd01808 hPLIC_N Ubiquitin-like 99.8 2.1E-18 4.6E-23 107.5 8.0 71 7-92 1-71 (71)
17 cd01809 Scythe_N Ubiquitin-lik 99.8 2.5E-18 5.4E-23 106.2 8.3 72 7-92 1-72 (72)
18 cd01805 RAD23_N Ubiquitin-like 99.8 3E-18 6.6E-23 107.6 8.7 74 7-94 1-76 (77)
19 PF00240 ubiquitin: Ubiquitin 99.8 2.4E-18 5.2E-23 105.9 6.8 69 12-94 1-69 (69)
20 cd01792 ISG15_repeat1 ISG15 ub 99.7 8.1E-18 1.8E-22 107.3 8.2 74 7-94 3-78 (80)
21 cd01800 SF3a120_C Ubiquitin-li 99.7 6.7E-18 1.5E-22 106.8 7.5 72 14-99 5-76 (76)
22 cd01796 DDI1_N DNA damage indu 99.7 2.1E-17 4.6E-22 103.4 7.1 67 9-89 1-69 (71)
23 KOG0005 Ubiquitin-like protein 99.7 2.1E-17 4.5E-22 101.0 4.4 69 8-90 2-70 (70)
24 KOG0004 Ubiquitin/40S ribosoma 99.7 2.4E-17 5.1E-22 117.0 4.3 83 7-103 1-83 (156)
25 cd01763 Sumo Small ubiquitin-r 99.7 1.1E-15 2.3E-20 99.2 10.1 81 2-96 7-87 (87)
26 cd01812 BAG1_N Ubiquitin-like 99.7 5.2E-16 1.1E-20 95.8 7.4 70 7-91 1-70 (71)
27 KOG0003 Ubiquitin/60s ribosoma 99.7 1.4E-17 3E-22 112.3 0.1 75 8-96 2-76 (128)
28 cd01815 BMSC_UbP_N Ubiquitin-l 99.6 1.1E-15 2.5E-20 97.3 5.8 56 26-92 19-75 (75)
29 TIGR00601 rad23 UV excision re 99.6 5.8E-15 1.3E-19 117.9 10.1 76 7-93 1-76 (378)
30 smart00213 UBQ Ubiquitin homol 99.6 6.5E-15 1.4E-19 88.3 6.6 64 7-79 1-64 (64)
31 cd01813 UBP_N UBP ubiquitin pr 99.6 1.4E-14 3.1E-19 91.5 7.5 63 15-91 8-73 (74)
32 KOG0010 Ubiquitin-like protein 99.6 1.2E-14 2.5E-19 118.3 8.4 75 6-95 15-89 (493)
33 cd01799 Hoil1_N Ubiquitin-like 99.5 9.1E-14 2E-18 88.2 7.5 68 9-91 5-74 (75)
34 cd01769 UBL Ubiquitin-like dom 99.5 5.1E-13 1.1E-17 80.9 7.9 67 11-91 2-68 (69)
35 KOG0011 Nucleotide excision re 99.4 1.9E-12 4.1E-17 101.3 8.2 67 7-79 1-67 (340)
36 PF11976 Rad60-SLD: Ubiquitin- 99.3 4.6E-12 9.9E-17 78.5 6.3 71 7-91 1-72 (72)
37 cd01795 USP48_C USP ubiquitin- 99.2 2.9E-11 6.2E-16 80.8 6.5 60 22-94 19-79 (107)
38 cd01789 Alp11_N Ubiquitin-like 99.2 1.1E-10 2.3E-15 75.3 9.0 72 7-92 2-81 (84)
39 KOG4248 Ubiquitin-like protein 99.2 3.5E-11 7.6E-16 104.7 6.8 74 8-96 4-77 (1143)
40 KOG0001 Ubiquitin and ubiquiti 99.1 1E-09 2.2E-14 65.7 9.2 72 9-94 2-73 (75)
41 PF14560 Ubiquitin_2: Ubiquiti 98.9 5E-09 1.1E-13 67.5 7.4 71 7-91 2-82 (87)
42 PLN02560 enoyl-CoA reductase 98.9 1.1E-08 2.5E-13 79.9 8.1 66 8-79 2-76 (308)
43 cd01801 Tsc13_N Ubiquitin-like 98.8 2.1E-08 4.6E-13 63.3 6.4 53 25-89 20-74 (77)
44 cd01788 ElonginB Ubiquitin-lik 98.8 3.1E-08 6.8E-13 67.5 7.3 78 9-93 3-81 (119)
45 cd00196 UBQ Ubiquitin-like pro 98.7 1.4E-07 3E-12 53.2 7.2 67 11-91 2-68 (69)
46 PF10302 DUF2407: DUF2407 ubiq 98.6 1E-07 2.2E-12 63.3 6.3 60 9-74 3-65 (97)
47 PF11543 UN_NPL4: Nuclear pore 98.4 8.7E-07 1.9E-11 56.8 5.8 69 5-89 3-77 (80)
48 KOG4583 Membrane-associated ER 98.4 1.9E-08 4.2E-13 79.4 -2.6 85 3-97 6-92 (391)
49 KOG0006 E3 ubiquitin-protein l 98.3 1.2E-06 2.6E-11 69.3 6.1 60 21-93 17-77 (446)
50 cd01811 OASL_repeat1 2'-5' oli 98.2 7.6E-06 1.6E-10 52.1 6.0 62 7-77 1-67 (80)
51 PF00789 UBX: UBX domain; Int 98.2 1.8E-05 3.8E-10 50.0 7.7 70 3-79 3-76 (82)
52 cd01770 p47_UBX p47-like ubiqu 98.1 5.7E-05 1.2E-09 48.2 8.8 68 4-78 2-72 (79)
53 KOG0013 Uncharacterized conser 97.8 2.8E-05 6.2E-10 58.2 4.7 68 4-79 143-211 (231)
54 KOG1769 Ubiquitin-like protein 97.8 0.0004 8.7E-09 46.3 9.5 79 4-96 18-96 (99)
55 KOG4495 RNA polymerase II tran 97.8 7.7E-05 1.7E-09 49.8 5.6 74 7-89 3-79 (110)
56 smart00166 UBX Domain present 97.7 0.00058 1.3E-08 43.1 8.6 67 4-78 2-73 (80)
57 cd01774 Faf1_like2_UBX Faf1 ik 97.7 0.0008 1.7E-08 43.5 8.9 67 4-79 2-78 (85)
58 PF08817 YukD: WXG100 protein 97.5 0.00037 8.1E-09 44.0 5.5 71 7-79 3-74 (79)
59 cd01772 SAKS1_UBX SAKS1-like U 97.5 0.0015 3.3E-08 41.3 8.0 67 4-79 2-73 (79)
60 cd01767 UBX UBX (ubiquitin reg 97.4 0.00099 2.1E-08 41.7 6.9 64 6-78 2-70 (77)
61 KOG3493 Ubiquitin-like protein 97.4 4.3E-05 9.3E-10 47.6 0.6 63 8-78 3-65 (73)
62 PF13019 Telomere_Sde2: Telome 97.3 0.0028 6.1E-08 45.7 8.8 81 7-97 1-89 (162)
63 KOG1872 Ubiquitin-specific pro 97.2 0.0022 4.7E-08 52.9 7.9 73 9-96 6-79 (473)
64 cd01771 Faf1_UBX Faf1 UBX doma 97.1 0.0088 1.9E-07 38.2 8.8 68 3-79 1-73 (80)
65 COG5417 Uncharacterized small 97.0 0.01 2.2E-07 37.9 8.2 71 6-79 6-76 (81)
66 COG5227 SMT3 Ubiquitin-like pr 96.8 0.011 2.3E-07 39.2 7.0 68 4-79 22-89 (103)
67 cd01773 Faf1_like1_UBX Faf1 ik 96.7 0.037 7.9E-07 35.7 9.0 68 3-79 2-74 (82)
68 KOG2086 Protein tyrosine phosp 95.8 0.03 6.5E-07 45.2 6.1 69 3-78 302-373 (380)
69 KOG3206 Alpha-tubulin folding 95.4 0.077 1.7E-06 40.0 6.6 60 22-94 17-83 (234)
70 PF15044 CLU_N: Mitochondrial 95.3 0.072 1.6E-06 33.6 5.4 58 24-93 1-59 (76)
71 cd06409 PB1_MUG70 The MUG70 pr 95.2 0.071 1.5E-06 34.7 5.2 35 8-43 2-36 (86)
72 PF09379 FERM_N: FERM N-termin 94.8 0.26 5.5E-06 30.3 7.0 71 11-92 1-77 (80)
73 PF11470 TUG-UBL1: GLUT4 regul 94.0 0.36 7.8E-06 29.7 6.1 59 13-79 3-61 (65)
74 smart00295 B41 Band 4.1 homolo 91.9 2.4 5.3E-05 29.8 8.9 63 5-74 2-70 (207)
75 smart00666 PB1 PB1 domain. Pho 91.5 1 2.2E-05 27.7 5.9 46 7-61 2-47 (81)
76 PF00564 PB1: PB1 domain; Int 91.5 1 2.2E-05 27.8 5.8 48 6-61 1-48 (84)
77 cd06406 PB1_P67 A PB1 domain i 91.3 0.92 2E-05 29.2 5.5 37 18-62 12-48 (80)
78 cd00754 MoaD Ubiquitin domain 91.0 2.1 4.6E-05 26.0 6.9 57 22-92 20-76 (80)
79 PLN02799 Molybdopterin synthas 89.9 1.1 2.4E-05 27.9 4.9 64 7-79 2-71 (82)
80 smart00455 RBD Raf-like Ras-bi 88.0 2.3 4.9E-05 26.3 5.3 45 9-61 2-46 (70)
81 PF10209 DUF2340: Uncharacteri 88.0 1.7 3.6E-05 30.1 5.1 56 23-78 21-100 (122)
82 cd01760 RBD Ubiquitin-like dom 86.5 2.8 6E-05 26.2 5.2 47 9-61 2-48 (72)
83 cd06407 PB1_NLP A PB1 domain i 86.3 2.8 6.2E-05 26.7 5.2 39 15-60 8-46 (82)
84 TIGR01682 moaD molybdopterin c 85.4 6.6 0.00014 24.2 7.3 56 15-79 13-69 (80)
85 PF08337 Plexin_cytopl: Plexin 84.4 3.8 8.2E-05 34.8 6.5 81 5-93 188-290 (539)
86 KOG1639 Steroid reductase requ 83.3 3.2 7E-05 32.3 5.2 59 18-79 13-72 (297)
87 PF08783 DWNN: DWNN domain; I 83.2 3.2 6.9E-05 26.2 4.3 55 9-74 1-56 (74)
88 PF02597 ThiS: ThiS family; I 81.8 6.5 0.00014 23.5 5.3 51 22-79 16-66 (77)
89 cd05992 PB1 The PB1 domain is 81.1 7.6 0.00016 23.5 5.5 45 8-61 2-47 (81)
90 KOG1364 Predicted ubiquitin re 80.4 2.5 5.5E-05 34.0 3.8 65 7-78 278-347 (356)
91 PF02196 RBD: Raf-like Ras-bin 80.1 11 0.00025 23.1 6.5 57 9-71 3-59 (71)
92 TIGR01687 moaD_arch MoaD famil 79.9 12 0.00026 23.3 6.9 54 22-79 20-77 (88)
93 PF12754 Blt1: Cell-cycle cont 79.7 0.58 1.2E-05 37.0 0.0 41 27-74 103-158 (309)
94 KOG0007 Splicing factor 3a, su 78.0 1 2.3E-05 35.6 1.0 49 14-70 290-339 (341)
95 KOG4250 TANK binding protein k 76.9 13 0.00028 32.7 7.3 45 13-65 321-365 (732)
96 KOG0012 DNA damage inducible p 76.1 8.1 0.00018 31.4 5.5 57 15-79 11-69 (380)
97 cd06411 PB1_p51 The PB1 domain 74.0 8.1 0.00017 24.7 4.1 37 18-62 8-44 (78)
98 cd01817 RGS12_RBD Ubiquitin do 73.5 19 0.0004 22.7 5.6 45 10-62 3-47 (73)
99 PF00788 RA: Ras association ( 72.4 19 0.00042 22.0 6.8 46 7-58 3-52 (93)
100 PF06234 TmoB: Toluene-4-monoo 72.3 24 0.00051 22.9 8.7 72 7-79 4-77 (85)
101 PF11620 GABP-alpha: GA-bindin 71.5 8.4 0.00018 25.2 3.8 58 22-92 7-64 (88)
102 PF14533 USP7_C2: Ubiquitin-sp 71.3 11 0.00023 27.9 4.8 48 22-73 38-90 (213)
103 KOG3391 Transcriptional co-rep 70.8 6.3 0.00014 28.0 3.3 39 59-103 108-147 (151)
104 cd01787 GRB7_RA RA (RAS-associ 70.3 17 0.00036 23.6 5.0 62 7-73 3-68 (85)
105 PF02505 MCR_D: Methyl-coenzym 69.9 15 0.00032 26.4 5.1 55 4-73 65-120 (153)
106 cd06408 PB1_NoxR The PB1 domai 67.9 30 0.00066 22.4 6.0 53 9-72 3-56 (86)
107 TIGR03260 met_CoM_red_D methyl 67.9 16 0.00035 26.1 5.0 55 4-73 64-118 (150)
108 cd01777 SNX27_RA Ubiquitin dom 65.2 20 0.00042 23.4 4.6 36 6-42 1-36 (87)
109 PF02192 PI3K_p85B: PI3-kinase 65.2 7.4 0.00016 24.7 2.6 21 22-42 4-24 (78)
110 KOG2561 Adaptor protein NUB1, 64.4 6.7 0.00014 33.0 2.8 50 22-78 54-103 (568)
111 cd01778 RASSF1_RA Ubiquitin-li 63.4 38 0.00082 22.5 5.7 35 7-42 7-41 (96)
112 PRK08364 sulfur carrier protei 62.8 32 0.00068 20.8 6.2 42 22-79 18-59 (70)
113 PRK06437 hypothetical protein; 61.8 33 0.00071 20.7 7.6 48 15-79 9-56 (67)
114 KOG2689 Predicted ubiquitin re 60.8 17 0.00036 28.6 4.2 67 6-78 210-279 (290)
115 KOG3439 Protein conjugation fa 60.4 46 0.001 22.8 5.8 52 5-64 29-84 (116)
116 PF14453 ThiS-like: ThiS-like 60.1 24 0.00053 21.1 4.0 38 22-72 10-47 (57)
117 PF11069 DUF2870: Protein of u 59.4 21 0.00045 23.8 3.9 37 56-97 3-39 (98)
118 cd06398 PB1_Joka2 The PB1 doma 59.2 46 0.001 21.5 5.9 45 9-61 3-52 (91)
119 cd01768 RA RA (Ras-associating 58.9 40 0.00086 20.7 6.3 48 16-69 12-65 (87)
120 cd06410 PB1_UP2 Uncharacterize 57.7 44 0.00096 21.9 5.4 31 11-42 17-47 (97)
121 smart00143 PI3K_p85B PI3-kinas 57.5 13 0.00029 23.7 2.7 21 22-42 4-24 (78)
122 KOG2507 Ubiquitin regulatory p 55.8 44 0.00095 28.1 6.0 66 5-78 313-383 (506)
123 cd06396 PB1_NBR1 The PB1 domai 54.2 47 0.001 21.2 4.9 27 15-42 8-36 (81)
124 TIGR02958 sec_mycoba_snm4 secr 53.7 1.2E+02 0.0027 25.0 8.5 80 8-96 4-84 (452)
125 PF14836 Ubiquitin_3: Ubiquiti 53.3 61 0.0013 21.1 7.1 49 22-78 18-72 (88)
126 PF06200 tify: tify domain; I 52.9 14 0.0003 20.2 1.9 13 52-64 5-17 (36)
127 smart00144 PI3K_rbd PI3-kinase 52.0 66 0.0014 21.2 7.2 80 6-93 17-105 (108)
128 COG4055 McrD Methyl coenzyme M 50.8 61 0.0013 23.3 5.4 55 4-73 73-128 (165)
129 PF14847 Ras_bdg_2: Ras-bindin 49.7 47 0.001 22.1 4.6 62 9-75 3-72 (105)
130 cd00565 ThiS ThiaminS ubiquiti 49.1 46 0.00099 19.5 4.1 46 22-79 9-54 (65)
131 COG1551 CsrA RNA-binding globa 44.8 79 0.0017 19.9 4.7 36 4-40 15-50 (73)
132 PTZ00380 microtubule-associate 43.3 41 0.00089 23.1 3.5 44 23-73 46-89 (121)
133 PF14941 OAF: Transcriptional 43.0 79 0.0017 24.3 5.3 57 2-65 23-79 (240)
134 COG5100 NPL4 Nuclear pore prot 42.9 1.2E+02 0.0025 25.6 6.6 71 8-91 2-78 (571)
135 PF00794 PI3K_rbd: PI3-kinase 42.4 92 0.002 20.0 5.7 68 4-74 14-85 (106)
136 PRK06083 sulfur carrier protei 39.6 1E+02 0.0022 19.6 6.5 63 1-79 11-73 (84)
137 smart00314 RA Ras association 38.2 96 0.0021 19.1 6.2 46 16-67 15-65 (90)
138 PRK11130 moaD molybdopterin sy 34.1 1.1E+02 0.0025 18.7 5.0 51 22-79 19-70 (81)
139 PF11816 DUF3337: Domain of un 34.0 77 0.0017 24.9 4.3 53 22-74 252-312 (331)
140 PF14807 AP4E_app_platf: Adapt 33.9 1.2E+02 0.0027 20.1 4.6 62 25-97 28-90 (104)
141 cd01775 CYR1_RA Ubiquitin doma 33.6 1.4E+02 0.0031 19.7 6.5 47 9-61 5-51 (97)
142 PF02824 TGS: TGS domain; Int 32.8 85 0.0018 18.3 3.4 31 9-42 1-31 (60)
143 PF14732 UAE_UbL: Ubiquitin/SU 32.5 96 0.0021 19.7 3.8 51 26-79 7-62 (87)
144 PF14044 NETI: NETI protein 32.0 77 0.0017 19.1 3.0 19 22-40 2-20 (57)
145 PF14533 USP7_C2: Ubiquitin-sp 31.3 31 0.00068 25.4 1.6 53 16-73 132-193 (213)
146 PF10407 Cytokin_check_N: Cdc1 30.2 42 0.0009 21.1 1.8 19 24-42 9-27 (73)
147 PRK12385 fumarate reductase ir 29.8 1.7E+02 0.0037 22.0 5.4 41 1-42 1-49 (244)
148 PF00276 Ribosomal_L23: Riboso 28.9 1.1E+02 0.0025 19.5 3.7 41 17-65 21-62 (91)
149 PF12436 USP7_ICP0_bdg: ICP0-b 28.5 1.7E+02 0.0038 21.9 5.2 45 6-58 176-223 (249)
150 PF11148 DUF2922: Protein of u 27.7 1.4E+02 0.0031 17.8 5.1 32 6-38 2-36 (69)
151 COG1978 Uncharacterized protei 25.9 1.6E+02 0.0034 21.0 4.2 33 9-42 52-84 (152)
152 cd01818 TIAM1_RBD Ubiquitin do 25.7 1.9E+02 0.004 18.5 5.6 46 10-61 3-48 (77)
153 PF06487 SAP18: Sin3 associate 24.6 1.2E+02 0.0026 20.7 3.4 52 26-79 45-114 (120)
154 cd06404 PB1_aPKC PB1 domain is 24.5 2E+02 0.0044 18.5 4.9 33 10-42 2-34 (83)
155 PF02991 Atg8: Autophagy prote 24.4 2E+02 0.0044 19.0 4.4 46 22-73 37-82 (104)
156 PF06244 DUF1014: Protein of u 24.4 65 0.0014 22.2 2.0 27 26-56 96-122 (122)
157 KOG2660 Locus-specific chromos 23.6 1.2E+02 0.0026 24.5 3.6 67 22-93 168-235 (331)
158 cd01776 Rin1_RA Ubiquitin doma 23.4 2.2E+02 0.0048 18.5 5.6 39 14-58 10-48 (87)
159 KOG2982 Uncharacterized conser 21.9 2.3E+02 0.005 23.2 4.9 51 22-79 352-410 (418)
160 PF09358 UBA_e1_C: Ubiquitin-a 21.5 1.4E+02 0.0031 20.2 3.3 23 22-44 37-59 (125)
161 cd01611 GABARAP Ubiquitin doma 21.5 2.6E+02 0.0057 18.6 6.5 45 22-73 45-90 (112)
162 PF13670 PepSY_2: Peptidase pr 21.2 2.1E+02 0.0045 17.4 4.1 24 4-28 53-76 (83)
163 KOG3309 Ferredoxin [Energy pro 21.2 2.2E+02 0.0048 20.6 4.3 31 4-35 41-71 (159)
164 PF08154 NLE: NLE (NUC135) dom 21.2 2E+02 0.0042 17.1 6.0 55 7-66 2-59 (65)
165 KOG0904 Phosphatidylinositol 3 21.0 2E+02 0.0043 26.6 4.8 85 3-96 34-125 (1076)
166 KOG4572 Predicted DNA-binding 20.7 1.8E+02 0.0039 26.9 4.4 52 15-74 3-56 (1424)
167 cd01764 Urm1 Urm1-like ubuitin 20.7 2.4E+02 0.0053 18.0 5.1 20 23-42 24-43 (94)
168 PRK05738 rplW 50S ribosomal pr 20.7 2E+02 0.0043 18.5 3.7 40 16-62 20-59 (92)
169 PF08825 E2_bind: E2 binding d 20.2 1.2E+02 0.0027 19.2 2.6 55 22-79 1-64 (84)
170 PRK05841 flgE flagellar hook p 20.2 1.7E+02 0.0036 25.5 4.1 42 4-46 246-296 (603)
171 cd00559 Cyanase_C Cyanase C-te 20.2 1.9E+02 0.004 18.1 3.3 31 32-65 21-65 (69)
No 1
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.95 E-value=2.9e-28 Score=165.03 Aligned_cols=103 Identities=55% Similarity=0.909 Sum_probs=95.2
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~ 82 (108)
+++.+.|+||+.+|.++.|+.+++++||++||++|++.||.+|+..|..+++|||||+||+|+|+.||++|+++-++.+.
T Consensus 1 ~~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~ 80 (113)
T cd01814 1 VEEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAG 80 (113)
T ss_pred CCccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCC
Confidence 47899999999999999999999999999999999999988777667668999999999999999999999999888888
Q ss_pred cceEEEEEecCCCCCCCCCCCCC
Q 033923 83 TAITMHVVLRPSLPDKKGGNTHN 105 (108)
Q Consensus 83 ~~~tvhlv~~~~~~~~~~~~~~~ 105 (108)
..+|||||+|++.+.++..++++
T Consensus 81 ~~~TmHvvlr~~~~~~~~~k~~~ 103 (113)
T cd01814 81 GVITMHVVVQPPLADKKTEKKVD 103 (113)
T ss_pred CceEEEEEecCCCCCcccccccc
Confidence 88999999999999999887764
No 2
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=99.95 E-value=4.4e-27 Score=159.64 Aligned_cols=99 Identities=53% Similarity=0.904 Sum_probs=82.9
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~ 84 (108)
+.|.|+||+.+|+++.++.+++++||++||++|+++||.+|+..|.+++.+||||+||+|+|+.+|++|+++.++.+..+
T Consensus 1 ~~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~ 80 (111)
T PF13881_consen 1 DKIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGP 80 (111)
T ss_dssp TSEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--
T ss_pred CeEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCC
Confidence 47899999999998888999999999999999999999999877888999999999999999999999999998876677
Q ss_pred eEEEEEecCCCCCCCCCCC
Q 033923 85 ITMHVVLRPSLPDKKGGNT 103 (108)
Q Consensus 85 ~tvhlv~~~~~~~~~~~~~ 103 (108)
++|||++++....++++++
T Consensus 81 ~vmHlvvrp~~~~~~~~~~ 99 (111)
T PF13881_consen 81 TVMHLVVRPNAPEPNEEKK 99 (111)
T ss_dssp EEEEEEE-SSSSSSSSSS-
T ss_pred EEEEEEecCCCCCcccccc
Confidence 8999999999888877665
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.85 E-value=4.5e-21 Score=120.49 Aligned_cols=74 Identities=20% Similarity=0.356 Sum_probs=69.9
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+||+.+|+++. +++++++||++||++|++..+ ++ +++|||+|+||.|+|+.+|++|+|++++ +
T Consensus 1 m~i~vk~~~G~~~~-l~v~~~~tV~~lK~~i~~~~g----i~---~~~q~L~~~G~~L~d~~~L~~~~i~~~~------~ 66 (74)
T cd01807 1 MFLTVKLLQGRECS-LQVSEKESVSTLKKLVSEHLN----VP---EEQQRLLFKGKALADDKRLSDYSIGPNA------K 66 (74)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHC----CC---HHHeEEEECCEECCCCCCHHHCCCCCCC------E
Confidence 47899999999988 999999999999999999998 88 8999999999999999999999999997 9
Q ss_pred EEEEecCC
Q 033923 87 MHVVLRPS 94 (108)
Q Consensus 87 vhlv~~~~ 94 (108)
+||+++++
T Consensus 67 l~l~~~~~ 74 (74)
T cd01807 67 LNLVVRPP 74 (74)
T ss_pred EEEEEcCC
Confidence 99999874
No 4
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.83 E-value=2.5e-20 Score=117.24 Aligned_cols=74 Identities=22% Similarity=0.181 Sum_probs=67.5
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+||. ++++. +++++++||++||++|++..+ +| +++|||||+||.|+|+.+|++|+|++++ +
T Consensus 1 mqi~vk~--~~~~~-l~v~~~~tV~~lK~~i~~~~g----ip---~~~q~Li~~Gk~L~D~~tL~~~~i~~~~------t 64 (74)
T cd01793 1 MQLFVRA--QNTHT-LEVTGQETVSDIKAHVAGLEG----ID---VEDQVLLLAGVPLEDDATLGQCGVEELC------T 64 (74)
T ss_pred CEEEEEC--CCEEE-EEECCcCcHHHHHHHHHhhhC----CC---HHHEEEEECCeECCCCCCHHHcCCCCCC------E
Confidence 4688887 46676 999999999999999999998 88 9999999999999999999999999987 9
Q ss_pred EEEEecCCCC
Q 033923 87 MHVVLRPSLP 96 (108)
Q Consensus 87 vhlv~~~~~~ 96 (108)
+|++++.+++
T Consensus 65 l~l~~~l~GG 74 (74)
T cd01793 65 LEVAGRLLGG 74 (74)
T ss_pred EEEEEecCCC
Confidence 9999998764
No 5
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.83 E-value=1.8e-20 Score=120.37 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=64.1
Q ss_pred eEEEEEEeCCCCeee-eeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccC--CCCCCCCC
Q 033923 6 LIELKFRLADGADIG-PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESR--LPVVELPG 82 (108)
Q Consensus 6 ~i~i~~r~~~g~~~~-~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~--i~~~~~~~ 82 (108)
.|.|.||.++|+... .+++++++||++||++|++..+. .|+ +++|||||+||+|+|+.+|++|. ++++.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~----~~~-~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~--- 72 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPS----KPL-EQDQRLIYSGKLLPDHLKLRDVLRKQDEYH--- 72 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCC----CCC-hhHeEEEEcCeeccchhhHHHHhhcccCCc---
Confidence 378999999999844 15568999999999999998763 122 79999999999999999999996 87765
Q ss_pred cceEEEEEec
Q 033923 83 TAITMHVVLR 92 (108)
Q Consensus 83 ~~~tvhlv~~ 92 (108)
+||||+.
T Consensus 73 ---tiHLV~~ 79 (79)
T cd01790 73 ---MVHLVCA 79 (79)
T ss_pred ---eEEEEeC
Confidence 9999973
No 6
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.82 E-value=7.9e-20 Score=122.41 Aligned_cols=78 Identities=27% Similarity=0.216 Sum_probs=73.3
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~ 84 (108)
+.++|+||..+|+++. +++++++||++||++|++.++ ++ +++|||+|+||.|+|+.+|++|+|.+++
T Consensus 26 ~~M~I~Vk~l~G~~~~-leV~~~~TV~~lK~kI~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~dy~I~~~s----- 92 (103)
T cd01802 26 DTMELFIETLTGTCFE-LRVSPFETVISVKAKIQRLEG----IP---VAQQHLIWNNMELEDEYCLNDYNISEGC----- 92 (103)
T ss_pred CCEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHHHhC----CC---hHHEEEEECCEECCCCCcHHHcCCCCCC-----
Confidence 4689999999999998 999999999999999999998 88 9999999999999999999999999997
Q ss_pred eEEEEEecCCCC
Q 033923 85 ITMHVVLRPSLP 96 (108)
Q Consensus 85 ~tvhlv~~~~~~ 96 (108)
++|++++.+++
T Consensus 93 -tL~l~~~l~GG 103 (103)
T cd01802 93 -TLKLVLAMRGG 103 (103)
T ss_pred -EEEEEEecCCC
Confidence 99999998763
No 7
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.82 E-value=4.8e-20 Score=115.54 Aligned_cols=70 Identities=24% Similarity=0.358 Sum_probs=65.6
Q ss_pred EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEE
Q 033923 9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMH 88 (108)
Q Consensus 9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvh 88 (108)
++||+.+|+++. +++++++||++||++|++..+ ++ +++|||||+|+.|+|+.+|++|+|.++. ++|
T Consensus 1 ~~vk~~~G~~~~-l~v~~~~TV~~lK~~I~~~~g----i~---~~~q~Li~~G~~L~D~~~l~~~~i~~~~------tv~ 66 (70)
T cd01794 1 LKVRLSTGKDVK-LSVSSKDTVGQLKKQLQAAEG----VD---PCCQRWFFSGKLLTDKTRLQETKIQKDY------VVQ 66 (70)
T ss_pred CeEEcCCCCEEE-EEECCcChHHHHHHHHHHHhC----CC---HHHeEEEECCeECCCCCCHHHcCCCCCC------EEE
Confidence 578999999998 999999999999999999988 78 8999999999999999999999999886 999
Q ss_pred EEec
Q 033923 89 VVLR 92 (108)
Q Consensus 89 lv~~ 92 (108)
|++.
T Consensus 67 ~~~~ 70 (70)
T cd01794 67 VIVN 70 (70)
T ss_pred EEeC
Confidence 9873
No 8
>PTZ00044 ubiquitin; Provisional
Probab=99.82 E-value=9.6e-20 Score=114.38 Aligned_cols=76 Identities=21% Similarity=0.356 Sum_probs=71.2
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+||+.+|+++. +++++++||++||++|++..+ ++ +++|||+|+|+.|+|+.+|++|++++++ +
T Consensus 1 m~i~vk~~~G~~~~-l~v~~~~tv~~lK~~i~~~~g----i~---~~~q~L~~~g~~L~d~~~l~~~~i~~~~------~ 66 (76)
T PTZ00044 1 MQILIKTLTGKKQS-FNFEPDNTVQQVKMALQEKEG----ID---VKQIRLIYSGKQMSDDLKLSDYKVVPGS------T 66 (76)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHC----CC---HHHeEEEECCEEccCCCcHHHcCCCCCC------E
Confidence 47999999999998 999999999999999999999 88 8999999999999999999999999997 9
Q ss_pred EEEEecCCCC
Q 033923 87 MHVVLRPSLP 96 (108)
Q Consensus 87 vhlv~~~~~~ 96 (108)
+|++++.+++
T Consensus 67 i~l~~~~~gg 76 (76)
T PTZ00044 67 IHMVLQLRGG 76 (76)
T ss_pred EEEEEEccCC
Confidence 9999997653
No 9
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.81 E-value=1.1e-19 Score=116.03 Aligned_cols=75 Identities=23% Similarity=0.321 Sum_probs=69.0
Q ss_pred EEEEEEeCCCCe-eeeeE-eCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923 7 IELKFRLADGAD-IGPSK-FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (108)
Q Consensus 7 i~i~~r~~~g~~-~~~l~-v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~ 84 (108)
++|+||+..|++ +. ++ +++++||++||++|++..+ ++ +++|||||+||.|+|+.+|++|+|++++
T Consensus 1 M~I~vk~~~G~~~~~-l~~v~~~~TV~~lK~~i~~~~g----i~---~~~QrLi~~Gk~L~D~~tL~~y~i~~~~----- 67 (78)
T cd01797 1 MWIQVRTMDGKETRT-VDSLSRLTKVEELREKIQELFN----VE---PECQRLFYRGKQMEDGHTLFDYNVGLND----- 67 (78)
T ss_pred CEEEEEcCCCCEEEE-eeccCCcCcHHHHHHHHHHHhC----CC---HHHeEEEeCCEECCCCCCHHHcCCCCCC-----
Confidence 479999999997 45 85 8999999999999999988 88 9999999999999999999999999997
Q ss_pred eEEEEEecCCC
Q 033923 85 ITMHVVLRPSL 95 (108)
Q Consensus 85 ~tvhlv~~~~~ 95 (108)
++|+++++..
T Consensus 68 -~i~l~~~~~~ 77 (78)
T cd01797 68 -IIQLLVRQDP 77 (78)
T ss_pred -EEEEEEecCC
Confidence 9999999764
No 10
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.81 E-value=1.2e-19 Score=114.05 Aligned_cols=74 Identities=24% Similarity=0.198 Sum_probs=69.4
Q ss_pred EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEE
Q 033923 9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMH 88 (108)
Q Consensus 9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvh 88 (108)
|+||+..|+++. +++++++||++||++|++..+ ++ +++|||+|+||.|+|+.+|++|+|++++ ++|
T Consensus 1 i~vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~~g----i~---~~~q~L~~~G~~L~D~~tL~~~~i~~~~------tl~ 66 (74)
T cd01810 1 ILVRNDKGRSSI-YEVQLTQTVATLKQQVSQRER----VQ---ADQFWLSFEGRPMEDEHPLGEYGLKPGC------TVF 66 (74)
T ss_pred CEEECCCCCEEE-EEECCcChHHHHHHHHHHHhC----CC---HHHeEEEECCEECCCCCCHHHcCCCCCC------EEE
Confidence 689999999998 999999999999999999988 88 9999999999999999999999999997 999
Q ss_pred EEecCCCC
Q 033923 89 VVLRPSLP 96 (108)
Q Consensus 89 lv~~~~~~ 96 (108)
++.+..++
T Consensus 67 l~~~l~gg 74 (74)
T cd01810 67 MNLRLRGG 74 (74)
T ss_pred EEEEccCC
Confidence 99987653
No 11
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.80 E-value=1.9e-19 Score=111.86 Aligned_cols=70 Identities=29% Similarity=0.380 Sum_probs=66.2
Q ss_pred EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEE
Q 033923 9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMH 88 (108)
Q Consensus 9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvh 88 (108)
|+||+.+|.++. +++++++||++||++|++..+ ++ +++|||+|+|+.|+|+.+|++|+|.+++ ++|
T Consensus 1 i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~g----i~---~~~q~Li~~G~~L~d~~~l~~~~i~~~s------tl~ 66 (70)
T cd01798 1 VYVRTNTGHTFP-VEVDPDTDIKQLKEVVAKRQG----VP---PDQLRVIFAGKELRNTTTIQECDLGQQS------ILH 66 (70)
T ss_pred CEEEcCCCCEEE-EEECCCChHHHHHHHHHHHHC----CC---HHHeEEEECCeECCCCCcHHHcCCCCCC------EEE
Confidence 578999999998 999999999999999999998 77 8999999999999999999999999997 999
Q ss_pred EEec
Q 033923 89 VVLR 92 (108)
Q Consensus 89 lv~~ 92 (108)
|+.|
T Consensus 67 l~~~ 70 (70)
T cd01798 67 AVRR 70 (70)
T ss_pred EEeC
Confidence 9975
No 12
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.80 E-value=2.8e-19 Score=113.04 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=66.8
Q ss_pred eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcce
Q 033923 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85 (108)
Q Consensus 6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~ 85 (108)
++.|+|+...|+.+. +++++++||++||++|++..+ ++ +++|||||+|++|+|+.+|++|+|.+++
T Consensus 1 ~~~i~vkt~~Gk~~~-~~v~~~~TV~~LK~~I~~~~~----~~---~~~qrLi~~Gk~L~D~~tL~~ygi~~~s------ 66 (73)
T cd01791 1 MIEVVCNDRLGKKVR-VKCNPDDTIGDLKKLIAAQTG----TR---PEKIVLKKWYTIFKDHISLGDYEIHDGM------ 66 (73)
T ss_pred CEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHHhC----CC---hHHEEEEeCCcCCCCCCCHHHcCCCCCC------
Confidence 478999999999998 999999999999999999988 78 9999999999999999999999999997
Q ss_pred EEEEE
Q 033923 86 TMHVV 90 (108)
Q Consensus 86 tvhlv 90 (108)
++||-
T Consensus 67 tv~l~ 71 (73)
T cd01791 67 NLELY 71 (73)
T ss_pred EEEEE
Confidence 99985
No 13
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.80 E-value=5.2e-19 Score=110.34 Aligned_cols=76 Identities=25% Similarity=0.326 Sum_probs=70.8
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+|+..+|+++. +++++++||++||++|++..+ ++ ++.|||+|+|+.|.|+.+|++|++++++ +
T Consensus 1 m~i~v~~~~g~~~~-~~v~~~~tv~~lK~~i~~~~g----~~---~~~qrL~~~g~~L~d~~tl~~~~i~~g~------~ 66 (76)
T cd01806 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEG----IP---PQQQRLIYSGKQMNDDKTAADYKLEGGS------V 66 (76)
T ss_pred CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHhHhhC----CC---hhhEEEEECCeEccCCCCHHHcCCCCCC------E
Confidence 47899999999998 999999999999999999988 78 8999999999999999999999999997 9
Q ss_pred EEEEecCCCC
Q 033923 87 MHVVLRPSLP 96 (108)
Q Consensus 87 vhlv~~~~~~ 96 (108)
+|++++.+++
T Consensus 67 i~l~~~~~gg 76 (76)
T cd01806 67 LHLVLALRGG 76 (76)
T ss_pred EEEEEEccCC
Confidence 9999987653
No 14
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.78 E-value=1.1e-18 Score=108.79 Aligned_cols=76 Identities=28% Similarity=0.374 Sum_probs=70.9
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+||..+|+++. +++++++||++||++|++..+ ++ ++.|||+|+|+.|+|+.+|++|++++++ +
T Consensus 1 m~i~v~~~~g~~~~-~~v~~~~tV~~lK~~i~~~~g----~~---~~~q~L~~~g~~L~d~~~L~~~~i~~~~------~ 66 (76)
T cd01803 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (76)
T ss_pred CEEEEEcCCCCEEE-EEECCcCcHHHHHHHHHHHhC----CC---HHHeEEEECCEECCCCCcHHHcCCCCCC------E
Confidence 47899999999998 999999999999999999998 77 8999999999999999999999999997 9
Q ss_pred EEEEecCCCC
Q 033923 87 MHVVLRPSLP 96 (108)
Q Consensus 87 vhlv~~~~~~ 96 (108)
+|++++.+++
T Consensus 67 i~l~~~~~gg 76 (76)
T cd01803 67 LHLVLRLRGG 76 (76)
T ss_pred EEEEEEccCC
Confidence 9999997764
No 15
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.78 E-value=1.8e-18 Score=110.17 Aligned_cols=75 Identities=19% Similarity=0.253 Sum_probs=69.5
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+|+...|+.+. +++++++||++||++|+++.+ ++ +++|||+|+|+.|+|+ +|++||+.+++ +
T Consensus 2 m~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~~~----~~---~~~qrL~~~Gk~L~d~-~L~~~gi~~~~------~ 66 (78)
T cd01804 2 MNLNIHSTTGTRFD-LSVPPDETVEGLKKRISQRLK----VP---KERLALLHRETRLSSG-KLQDLGLGDGS------K 66 (78)
T ss_pred eEEEEEECCCCEEE-EEECCcCHHHHHHHHHHHHhC----CC---hHHEEEEECCcCCCCC-cHHHcCCCCCC------E
Confidence 68999999999987 999999999999999999987 77 8999999999999998 99999999997 9
Q ss_pred EEEEecCCCC
Q 033923 87 MHVVLRPSLP 96 (108)
Q Consensus 87 vhlv~~~~~~ 96 (108)
+|++....++
T Consensus 67 i~l~~~~~~~ 76 (78)
T cd01804 67 LTLVPTVEAG 76 (78)
T ss_pred EEEEeecccc
Confidence 9999987654
No 16
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.77 E-value=2.1e-18 Score=107.50 Aligned_cols=71 Identities=23% Similarity=0.383 Sum_probs=65.1
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
+.|+|+...|. .. +++++++||++||++|++.++ ++ +++|||+|+||.|+|+.+|++|++++++ +
T Consensus 1 ~~i~vk~~~g~-~~-l~v~~~~TV~~lK~~I~~~~~----i~---~~~~~Li~~Gk~L~d~~tL~~~~i~~~s------t 65 (71)
T cd01808 1 IKVTVKTPKDK-EE-IEIAEDASVKDFKEAVSKKFK----AN---QEQLVLIFAGKILKDTDTLTQHNIKDGL------T 65 (71)
T ss_pred CEEEEEcCCCC-EE-EEECCCChHHHHHHHHHHHhC----CC---HHHEEEEECCeEcCCCCcHHHcCCCCCC------E
Confidence 46889999997 45 999999999999999999998 77 8999999999999999999999999997 9
Q ss_pred EEEEec
Q 033923 87 MHVVLR 92 (108)
Q Consensus 87 vhlv~~ 92 (108)
+|++++
T Consensus 66 l~l~~~ 71 (71)
T cd01808 66 VHLVIK 71 (71)
T ss_pred EEEEEC
Confidence 999875
No 17
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.77 E-value=2.5e-18 Score=106.24 Aligned_cols=72 Identities=32% Similarity=0.398 Sum_probs=67.6
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+|+..+|.++. +++++++||++||++|++.++ ++ ++.|||+|+|+.|+|+.+|++|++.+++ +
T Consensus 1 i~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~~g----i~---~~~q~L~~~g~~L~d~~~L~~~~i~~~~------~ 66 (72)
T cd01809 1 IEIKVKTLDSQTHT-FTVEEEITVLDLKEKIAEEVG----IP---VEQQRLIYSGRVLKDDETLSEYKVEDGH------T 66 (72)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHC----cC---HHHeEEEECCEECCCcCcHHHCCCCCCC------E
Confidence 57899999999987 999999999999999999998 77 8999999999999999999999999997 9
Q ss_pred EEEEec
Q 033923 87 MHVVLR 92 (108)
Q Consensus 87 vhlv~~ 92 (108)
+|++.+
T Consensus 67 l~l~~~ 72 (72)
T cd01809 67 IHLVKR 72 (72)
T ss_pred EEEEeC
Confidence 999875
No 18
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.77 E-value=3e-18 Score=107.64 Aligned_cols=74 Identities=27% Similarity=0.374 Sum_probs=68.0
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcC--CCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKEN--GPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i--~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~ 84 (108)
++|+||..+|+++. +++++++||++||++|++.++ + + +++|||+|+|+.|+|+.+|++|++++++
T Consensus 1 m~i~vk~~~g~~~~-l~v~~~~TV~~lK~~i~~~~~----i~~~---~~~q~L~~~G~~L~d~~~L~~~~i~~~~----- 67 (77)
T cd01805 1 MKITFKTLKQQTFP-IEVDPDDTVAELKEKIEEEKG----CDYP---PEQQKLIYSGKILKDDTTLEEYKIDEKD----- 67 (77)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHhhC----CCCC---hhHeEEEECCEEccCCCCHHHcCCCCCC-----
Confidence 47899999999998 999999999999999999998 6 6 8999999999999999999999999997
Q ss_pred eEEEEEecCC
Q 033923 85 ITMHVVLRPS 94 (108)
Q Consensus 85 ~tvhlv~~~~ 94 (108)
+++++++.+
T Consensus 68 -~i~~~~~~~ 76 (77)
T cd01805 68 -FVVVMVSKP 76 (77)
T ss_pred -EEEEEEecC
Confidence 888887653
No 19
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.76 E-value=2.4e-18 Score=105.93 Aligned_cols=69 Identities=29% Similarity=0.414 Sum_probs=64.6
Q ss_pred EeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEEEEe
Q 033923 12 RLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVL 91 (108)
Q Consensus 12 r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv~ 91 (108)
|+.+|+++. +++++++||++||++|+...+ ++ ++.|||+|+|+.|+|+.+|++|+|.+++ +||+++
T Consensus 1 k~~~g~~~~-~~v~~~~tV~~lK~~i~~~~~----~~---~~~~~L~~~G~~L~d~~tL~~~~i~~~~------~I~l~~ 66 (69)
T PF00240_consen 1 KTLSGKTFT-LEVDPDDTVADLKQKIAEETG----IP---PEQQRLIYNGKELDDDKTLSDYGIKDGS------TIHLVI 66 (69)
T ss_dssp EETTSEEEE-EEEETTSBHHHHHHHHHHHHT----ST---GGGEEEEETTEEESTTSBTGGGTTSTTE------EEEEEE
T ss_pred CCCCCcEEE-EEECCCCCHHHhhhhcccccc----cc---cccceeeeeeecccCcCcHHHcCCCCCC------EEEEEE
Confidence 568899888 999999999999999999999 78 9999999999999999999999999997 999999
Q ss_pred cCC
Q 033923 92 RPS 94 (108)
Q Consensus 92 ~~~ 94 (108)
+++
T Consensus 67 k~~ 69 (69)
T PF00240_consen 67 KPR 69 (69)
T ss_dssp SSE
T ss_pred ecC
Confidence 864
No 20
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.75 E-value=8.1e-18 Score=107.34 Aligned_cols=74 Identities=19% Similarity=0.305 Sum_probs=69.3
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEE--EEcCcccCCCCcccccCCCCCCCCCcc
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQL--IHAGKILEDNMTIAESRLPVVELPGTA 84 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRL--Iy~Gk~L~D~~tL~~~~i~~~~~~~~~ 84 (108)
++|+|+...|+++. +++++++||++||++|++..+ ++ +++||| +|.|+.|.|+.+|++|++.+++
T Consensus 3 ~~i~Vk~~~G~~~~-~~v~~~~TV~~lK~~I~~~~~----i~---~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs----- 69 (80)
T cd01792 3 WDLKVKMLGGNEFL-VSLRDSMTVSELKQQIAQKIG----VP---AFQQRLAHLDSREVLQDGVPLVSQGLGPGS----- 69 (80)
T ss_pred eEEEEEeCCCCEEE-EEcCCCCcHHHHHHHHHHHhC----CC---HHHEEEEeccCCCCCCCCCCHHHcCCCCCC-----
Confidence 78999999999998 999999999999999999998 77 899999 9999999999999999999997
Q ss_pred eEEEEEecCC
Q 033923 85 ITMHVVLRPS 94 (108)
Q Consensus 85 ~tvhlv~~~~ 94 (108)
++||+++..
T Consensus 70 -~l~l~~~~~ 78 (80)
T cd01792 70 -TVLLVVQNC 78 (80)
T ss_pred -EEEEEEEcc
Confidence 899998743
No 21
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.74 E-value=6.7e-18 Score=106.78 Aligned_cols=72 Identities=21% Similarity=0.194 Sum_probs=66.6
Q ss_pred CCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEEEEecC
Q 033923 14 ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRP 93 (108)
Q Consensus 14 ~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv~~~ 93 (108)
.+|+++. +++++++||++||++|+...+ +| ++.|||+|+|+.|+|+.+|++|++.+++ ++|++++.
T Consensus 5 l~g~~~~-l~v~~~~TV~~lK~~i~~~~g----ip---~~~q~L~~~G~~L~d~~tL~~~~i~~g~------~l~v~~~~ 70 (76)
T cd01800 5 LNGQMLN-FTLQLSDPVSVLKVKIHEETG----MP---AGKQKLQYEGIFIKDSNSLAYYNLANGT------IIHLQLKE 70 (76)
T ss_pred cCCeEEE-EEECCCCcHHHHHHHHHHHHC----CC---HHHEEEEECCEEcCCCCcHHHcCCCCCC------EEEEEEec
Confidence 4678887 999999999999999999998 88 8999999999999999999999999997 99999999
Q ss_pred CCCCCC
Q 033923 94 SLPDKK 99 (108)
Q Consensus 94 ~~~~~~ 99 (108)
+++.++
T Consensus 71 ~gg~~~ 76 (76)
T cd01800 71 RGGRKK 76 (76)
T ss_pred CCCcCC
Confidence 887664
No 22
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.72 E-value=2.1e-17 Score=103.43 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=61.8
Q ss_pred EEEEeC-CCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCC-CcccccCCCCCCCCCcceE
Q 033923 9 LKFRLA-DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDN-MTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 9 i~~r~~-~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~-~tL~~~~i~~~~~~~~~~t 86 (108)
|+|++. .|+++. +++++++||++||++|++..+ +| +++|||+|+||.|+|+ .+|++|+|++++ +
T Consensus 1 l~v~~~~~g~~~~-l~v~~~~TV~~lK~~I~~~~g----ip---~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~------~ 66 (71)
T cd01796 1 ITVYTARSETTFS-LDVDPDLELENFKALCEAESG----IP---ASQQQLIYNGRELVDNKRLLALYGVKDGD------L 66 (71)
T ss_pred CEEEECCCCCEEE-EEECCcCCHHHHHHHHHHHhC----CC---HHHeEEEECCeEccCCcccHHHcCCCCCC------E
Confidence 578888 899887 999999999999999999998 88 8999999999999987 689999999997 8
Q ss_pred EEE
Q 033923 87 MHV 89 (108)
Q Consensus 87 vhl 89 (108)
+||
T Consensus 67 l~l 69 (71)
T cd01796 67 VVL 69 (71)
T ss_pred EEE
Confidence 876
No 23
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.1e-17 Score=100.97 Aligned_cols=69 Identities=28% Similarity=0.346 Sum_probs=65.5
Q ss_pred EEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEE
Q 033923 8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITM 87 (108)
Q Consensus 8 ~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tv 87 (108)
-|++++++|+.+. ++++|+++|..+|++|+++.| +| |.+|||||+||.|.|+.+.++|++.-|+ ++
T Consensus 2 ~iKvktLt~KeIe-idIep~DkverIKErvEEkeG----IP---p~qqrli~~gkqm~DD~tA~~Y~~~~GS------Vl 67 (70)
T KOG0005|consen 2 LIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEG----IP---PQQQRLIYAGKQMNDDKTAAHYNLLGGS------VL 67 (70)
T ss_pred eeeEeeeccceEE-EeeCcchHHHHHHHHhhhhcC----CC---chhhhhhhccccccccccHHHhhhccce------eE
Confidence 5889999999998 999999999999999999999 99 8999999999999999999999999886 89
Q ss_pred EEE
Q 033923 88 HVV 90 (108)
Q Consensus 88 hlv 90 (108)
|++
T Consensus 68 Hlv 70 (70)
T KOG0005|consen 68 HLV 70 (70)
T ss_pred eeC
Confidence 985
No 24
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2.4e-17 Score=116.95 Aligned_cols=83 Identities=27% Similarity=0.328 Sum_probs=77.6
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+|....|+++. +++.+++||..+|++|++..+ || +++|||||+|+.|+|..+|+||+|+..+ |
T Consensus 1 m~ifVk~l~~kti~-~eve~~~ti~~~Kakiq~~eg----Ip---~dqqrlifag~qLedgrtlSDY~Iqkes------t 66 (156)
T KOG0004|consen 1 MQIFVKTLTGKTIT-LEVEANDTIDNVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (156)
T ss_pred Cccchhhcccccee-eeecccccHHHHHHhhhcccC----CC---chhhhhhhhhcccccCCccccccccccc------e
Confidence 36889999999998 999999999999999999998 99 9999999999999999999999999886 9
Q ss_pred EEEEecCCCCCCCCCCC
Q 033923 87 MHVVLRPSLPDKKGGNT 103 (108)
Q Consensus 87 vhlv~~~~~~~~~~~~~ 103 (108)
+||+++.+++.++.+++
T Consensus 67 l~l~l~l~Gg~kkrkkk 83 (156)
T KOG0004|consen 67 LHLVLRLRGGAKKRKKK 83 (156)
T ss_pred EEEEEEecCCccccccc
Confidence 99999999998888774
No 25
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.67 E-value=1.1e-15 Score=99.18 Aligned_cols=81 Identities=22% Similarity=0.265 Sum_probs=75.4
Q ss_pred CCCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCC
Q 033923 2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELP 81 (108)
Q Consensus 2 ~~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~ 81 (108)
.....|+|+|+..+|+.+. +++.+++++..||+++++..+ ++ +++|||+|.|+.|.|+.|+++|++.+++
T Consensus 7 ~~~~~i~I~v~~~~g~~~~-~~v~~~~~l~~l~~~y~~~~g----i~---~~~~rf~f~G~~L~~~~T~~~l~m~d~d-- 76 (87)
T cd01763 7 EISEHINLKVKGQDGNEVF-FKIKRSTPLKKLMEAYCQRQG----LS---MNSVRFLFDGQRIRDNQTPDDLGMEDGD-- 76 (87)
T ss_pred CCCCeEEEEEECCCCCEEE-EEEcCCCHHHHHHHHHHHHhC----CC---ccceEEEECCeECCCCCCHHHcCCCCCC--
Confidence 3467899999999999998 999999999999999999998 77 8999999999999999999999999998
Q ss_pred CcceEEEEEecCCCC
Q 033923 82 GTAITMHVVLRPSLP 96 (108)
Q Consensus 82 ~~~~tvhlv~~~~~~ 96 (108)
++|++++..++
T Consensus 77 ----~I~v~l~l~GG 87 (87)
T cd01763 77 ----EIEVMLEQTGG 87 (87)
T ss_pred ----EEEEEEecccC
Confidence 99999988764
No 26
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.66 E-value=5.2e-16 Score=95.78 Aligned_cols=70 Identities=19% Similarity=0.189 Sum_probs=63.6
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
|+|+||.. |.... +++++++||++||++|+...+ ++ ++.|||+|+|+.|.|+.+|++|++.+|+ +
T Consensus 1 i~i~vk~~-g~~~~-i~v~~~~tv~~lK~~i~~~~g----i~---~~~q~L~~~g~~l~d~~~L~~~~i~~g~------~ 65 (71)
T cd01812 1 IRVRVKHG-GESHD-LSISSQATFGDLKKMLAPVTG----VE---PRDQKLIFKGKERDDAETLDMSGVKDGS------K 65 (71)
T ss_pred CEEEEEEC-CEEEE-EEECCCCcHHHHHHHHHHhhC----CC---hHHeEEeeCCcccCccCcHHHcCCCCCC------E
Confidence 46888887 87776 999999999999999999998 78 8999999999999999999999999997 8
Q ss_pred EEEEe
Q 033923 87 MHVVL 91 (108)
Q Consensus 87 vhlv~ 91 (108)
+|++.
T Consensus 66 l~v~~ 70 (71)
T cd01812 66 VMLLE 70 (71)
T ss_pred EEEec
Confidence 88864
No 27
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.4e-17 Score=112.34 Aligned_cols=75 Identities=29% Similarity=0.372 Sum_probs=71.1
Q ss_pred EEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEE
Q 033923 8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITM 87 (108)
Q Consensus 8 ~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tv 87 (108)
++++....|+++. ++++|++||..||++|...+| ++ +++|||||+||+|+|..||++|+|+..+ |+
T Consensus 2 ~~~~~~~~GKT~~-le~EpS~ti~~vKA~i~~~~G----i~---~~~~~L~~~~k~LED~~Tla~Y~i~~~~------Tl 67 (128)
T KOG0003|consen 2 QIFVKTLTGKTIT-LEVEPSDTIDNVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLADYNIQKES------TL 67 (128)
T ss_pred cEEEEEeeCceEE-EEecccchHHHHHHHhccccC----CC---HHHHHHHhcccccccCCcccccCccchh------hh
Confidence 5788889999998 999999999999999999999 88 9999999999999999999999999887 99
Q ss_pred EEEecCCCC
Q 033923 88 HVVLRPSLP 96 (108)
Q Consensus 88 hlv~~~~~~ 96 (108)
|++.+.+++
T Consensus 68 ~~~~rL~GG 76 (128)
T KOG0003|consen 68 HLVLRLRGG 76 (128)
T ss_pred hhhHHHhcC
Confidence 999998887
No 28
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.61 E-value=1.1e-15 Score=97.25 Aligned_cols=56 Identities=25% Similarity=0.386 Sum_probs=49.2
Q ss_pred CcchHHHHHHHHHhhCCCCCcC-CCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEEEEec
Q 033923 26 PTTTVASLKEKIISRWPKEKEN-GPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLR 92 (108)
Q Consensus 26 ~~~TV~~LK~~I~~~~~~~~~i-~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv~~ 92 (108)
.++||.+||++|+++.+.. + + +++|||||+||+|+|+.+|++|+|++++ ++||+..
T Consensus 19 ~~~TV~~LK~kI~~~~~eg--i~~---~dqQrLIy~GKiL~D~~TL~dygI~~gs------tlhLv~~ 75 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDS--LPD---PELIDLIHCGRKLKDDQTLDFYGIQSGS------TIHILRK 75 (75)
T ss_pred ccCcHHHHHHHHHHhhccC--CCC---hHHeEEEeCCcCCCCCCcHHHcCCCCCC------EEEEEeC
Confidence 5899999999999996421 3 3 7999999999999999999999999997 9999863
No 29
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.60 E-value=5.8e-15 Score=117.87 Aligned_cols=76 Identities=29% Similarity=0.399 Sum_probs=66.1
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+||+.+|+++. ++|++++||.+||++|+...+.+. ++ +++|||||+||+|+|+.+|++|+|.+++ +
T Consensus 1 MkItVKtl~g~~~~-IeV~~~~TV~dLK~kI~~~~g~~~-ip---~~~QkLIy~GkiL~Dd~tL~dy~I~e~~------~ 69 (378)
T TIGR00601 1 MTLTFKTLQQQKFK-IDMEPDETVKELKEKIEAEQGKDA-YP---VAQQKLIYSGKILSDDKTVREYKIKEKD------F 69 (378)
T ss_pred CEEEEEeCCCCEEE-EEeCCcChHHHHHHHHHHhhCCCC-CC---hhHeEEEECCEECCCCCcHHHcCCCCCC------E
Confidence 47999999999998 999999999999999999876321 56 8999999999999999999999999887 5
Q ss_pred EEEEecC
Q 033923 87 MHVVLRP 93 (108)
Q Consensus 87 vhlv~~~ 93 (108)
|++++..
T Consensus 70 Ivvmv~k 76 (378)
T TIGR00601 70 VVVMVSK 76 (378)
T ss_pred EEEEecc
Confidence 5555553
No 30
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.58 E-value=6.5e-15 Score=88.26 Aligned_cols=64 Identities=36% Similarity=0.433 Sum_probs=58.3
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
++|+||..+ ..+. +++++++||++||++|+..++ ++ ++.|||+|+|+.|.|+.+|++|++.+++
T Consensus 1 ~~i~vk~~~-~~~~-~~v~~~~tv~~lk~~i~~~~~----~~---~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTIT-LEVKPSDTVSELKEKIAELTG----IP---VEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEE-EEECCCCcHHHHHHHHHHHHC----CC---HHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 478999988 6666 999999999999999999998 77 8899999999999999999999998763
No 31
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.56 E-value=1.4e-14 Score=91.53 Aligned_cols=63 Identities=21% Similarity=0.171 Sum_probs=57.5
Q ss_pred CCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEE---cCcccCCCCcccccCCCCCCCCCcceEEEEEe
Q 033923 15 DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH---AGKILEDNMTIAESRLPVVELPGTAITMHVVL 91 (108)
Q Consensus 15 ~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy---~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv~ 91 (108)
.|+++. +++++++||++||++|++..+ +| +++||||| +|+.|.|+.+|++|++.+++ .++|+-
T Consensus 8 ~g~~~~-v~v~~~~Tv~~lK~~i~~~tg----vp---~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~------~i~lmG 73 (74)
T cd01813 8 GGQEYS-VTTLSEDTVLDLKQFIKTLTG----VL---PERQKLLGLKVKGKPAEDDVKISALKLKPNT------KIMMMG 73 (74)
T ss_pred CCEEEE-EEECCCCCHHHHHHHHHHHHC----CC---HHHEEEEeecccCCcCCCCcCHHHcCCCCCC------EEEEEe
Confidence 567776 999999999999999999998 88 99999997 99999999999999999987 777763
No 32
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.56 E-value=1.2e-14 Score=118.35 Aligned_cols=75 Identities=25% Similarity=0.388 Sum_probs=66.8
Q ss_pred eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcce
Q 033923 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85 (108)
Q Consensus 6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~ 85 (108)
.+.|.||+.++ ... |.|..+.||.+||+.|..... ++ +++++|||+||+|+|++||..|||++|.
T Consensus 15 ~irV~Vkt~~d-k~~-~~V~~~ssV~qlKE~I~~~f~----a~---~dqlvLIfaGrILKD~dTL~~~gI~Dg~------ 79 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYE-VNVASDSSVLQLKELIAQRFG----AP---PDQLVLIYAGRILKDDDTLKQYGIQDGH------ 79 (493)
T ss_pred eeEEEEecCCc-cee-EecccchHHHHHHHHHHHhcC----CC---hhHeeeeecCccccChhhHHHcCCCCCc------
Confidence 36788888777 344 999999999999999999987 67 9999999999999999999999999996
Q ss_pred EEEEEecCCC
Q 033923 86 TMHVVLRPSL 95 (108)
Q Consensus 86 tvhlv~~~~~ 95 (108)
|||||++...
T Consensus 80 TvHLVik~~~ 89 (493)
T KOG0010|consen 80 TVHLVIKSQP 89 (493)
T ss_pred EEEEEeccCC
Confidence 9999998653
No 33
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.51 E-value=9.1e-14 Score=88.21 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=58.3
Q ss_pred EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccC-CCCcccccCCC-CCCCCCcceE
Q 033923 9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILE-DNMTIAESRLP-VVELPGTAIT 86 (108)
Q Consensus 9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~-D~~tL~~~~i~-~~~~~~~~~t 86 (108)
|-=+...|.++. +++++++||++||++|++..+ +| +++||| |.|+.|. |+.+|++|++. +|+ +
T Consensus 5 ~~~~~~~~~t~~-l~v~~~~TV~~lK~kI~~~~g----ip---~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~------~ 69 (75)
T cd01799 5 VEDAQSHTVTIW-LTVRPDMTVAQLKDKVFLDYG----FP---PAVQRW-VIGQRLARDQETLYSHGIRTNGD------S 69 (75)
T ss_pred EeccccCCCeEE-EEECCCCcHHHHHHHHHHHHC----cC---HHHEEE-EcCCeeCCCcCCHHHcCCCCCCC------E
Confidence 333456788887 999999999999999999999 88 899999 9999885 77999999999 666 8
Q ss_pred EEEEe
Q 033923 87 MHVVL 91 (108)
Q Consensus 87 vhlv~ 91 (108)
+||-+
T Consensus 70 ~~l~~ 74 (75)
T cd01799 70 AFLYI 74 (75)
T ss_pred EEEEe
Confidence 88754
No 34
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.46 E-value=5.1e-13 Score=80.88 Aligned_cols=67 Identities=34% Similarity=0.437 Sum_probs=60.5
Q ss_pred EEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEEEE
Q 033923 11 FRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVV 90 (108)
Q Consensus 11 ~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv 90 (108)
||..+|..+. +.+++++||++||++|+..++ ++ ++.|+|+|+|+.|+|+.+|++|++.+++ ++++.
T Consensus 2 v~~~~~~~~~-~~~~~~~ti~~lK~~i~~~~~----~~---~~~~~l~~~g~~l~d~~~l~~~~v~~~~------~i~v~ 67 (69)
T cd01769 2 VKTLTGKTFE-LEVSPDDTVAELKAKIAAKEG----VP---PEQQRLIYAGKILKDDKTLSDYGIQDGS------TLHLV 67 (69)
T ss_pred eEccCCCEEE-EEECCCChHHHHHHHHHHHHC----cC---hHHEEEEECCcCCCCcCCHHHCCCCCCC------EEEEE
Confidence 5666888887 999999999999999999998 77 8999999999999999999999999886 78776
Q ss_pred e
Q 033923 91 L 91 (108)
Q Consensus 91 ~ 91 (108)
.
T Consensus 68 ~ 68 (69)
T cd01769 68 L 68 (69)
T ss_pred E
Confidence 4
No 35
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.38 E-value=1.9e-12 Score=101.32 Aligned_cols=67 Identities=24% Similarity=0.345 Sum_probs=63.4
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
+.|+||++.|.+++ +++.|++||.++|.+|+...+.+ .| .+.|+|||+||+|.|+.++.+|++.+++
T Consensus 1 m~lt~KtL~q~~F~-iev~Pe~tV~evK~kIet~~g~d--yP---~~~QkLIy~GkiL~D~~tv~Eykv~E~~ 67 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFT-IEVKPEDTVVEVKKKIETEKGPD--YP---AEQQKLIYSGKILKDETTVGEYKVKEKK 67 (340)
T ss_pred CeeEeeeccCceeE-eecCcchhHHHHHHHHHhccCCC--Cc---hhhheeeecceeccCCcchhhhccccCc
Confidence 47899999999998 99999999999999999999877 67 8999999999999999999999999887
No 36
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.33 E-value=4.6e-12 Score=78.50 Aligned_cols=71 Identities=34% Similarity=0.419 Sum_probs=63.6
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCC-CceEEEEcCcccCCCCcccccCCCCCCCCCcce
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTV-NNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~-~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~ 85 (108)
++|+++..+|+.+. +.+.+++++..|++.+.++.+ ++ + +.++|+|.|+.|.++.|++++++.+++
T Consensus 1 I~i~v~~~~~~~~~-~~v~~~~~~~~l~~~~~~~~~----i~---~~~~~~l~fdG~~L~~~~T~~~~~ied~d------ 66 (72)
T PF11976_consen 1 ITIKVRSQDGKEIK-FKVKPTTTVSKLIEKYCEKKG----IP---PEESIRLIFDGKRLDPNDTPEDLGIEDGD------ 66 (72)
T ss_dssp EEEEEEETTSEEEE-EEEETTSCCHHHHHHHHHHHT----TT---T-TTEEEEETTEEE-TTSCHHHHT-STTE------
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHhhC----CC---ccceEEEEECCEEcCCCCCHHHCCCCCCC------
Confidence 57999999999888 999999999999999999988 66 6 999999999999999999999999998
Q ss_pred EEEEEe
Q 033923 86 TMHVVL 91 (108)
Q Consensus 86 tvhlv~ 91 (108)
++++++
T Consensus 67 ~Idv~I 72 (72)
T PF11976_consen 67 TIDVII 72 (72)
T ss_dssp EEEEE-
T ss_pred EEEEEC
Confidence 898874
No 37
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.23 E-value=2.9e-11 Score=80.77 Aligned_cols=60 Identities=20% Similarity=0.173 Sum_probs=54.4
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCC-CCcccccCCCCCCCCCcceEEEEEecCC
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILED-NMTIAESRLPVVELPGTAITMHVVLRPS 94 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D-~~tL~~~~i~~~~~~~~~~tvhlv~~~~ 94 (108)
+.|.+++||++||.+|.+..+ ++ |.+|+|+|.|+.|.| ..||++||+..++ +++|.+..+
T Consensus 19 L~V~~~~TVg~LK~lImQ~f~----V~---P~dQkL~~dG~~L~DDsrTLssyGv~sgS------vl~LlideP 79 (107)
T cd01795 19 LLVSANQTLKELKIQIMHAFS----VA---PFDQNLSIDGKILSDDCATLGTLGVIPES------VILLKADEP 79 (107)
T ss_pred EEeCccccHHHHHHHHHHHhc----CC---cccceeeecCceeccCCccHHhcCCCCCC------EEEEEecCC
Confidence 899999999999999999999 77 999999999999965 6899999999887 888988644
No 38
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.23 E-value=1.1e-10 Score=75.34 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=57.3
Q ss_pred EEEEEEeCC-CCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEE-EEcCc-----cc-CCCCcccccCCCCC
Q 033923 7 IELKFRLAD-GADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQL-IHAGK-----IL-EDNMTIAESRLPVV 78 (108)
Q Consensus 7 i~i~~r~~~-g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRL-Iy~Gk-----~L-~D~~tL~~~~i~~~ 78 (108)
+.|.|.... ....+ .++++++||.+||++|+...| ++ ++.||| +|.|+ .| +|+.+|+.|++++|
T Consensus 2 v~v~i~~~~~~~~~e-kr~~~~~Tv~~lK~kl~~~~G----~~---~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg 73 (84)
T cd01789 2 VTVNITSSADSFSFE-KKYSRGLTIAELKKKLELVVG----TP---ASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDG 73 (84)
T ss_pred EEEEEEeCCCceeee-EecCCCCcHHHHHHHHHHHHC----CC---ccceEEEEEcCCCCeEeecCCCccEeeeccCCCC
Confidence 345554433 22333 669999999999999999999 77 899999 58999 35 78899999999999
Q ss_pred CCCCcceEEEEEec
Q 033923 79 ELPGTAITMHVVLR 92 (108)
Q Consensus 79 ~~~~~~~tvhlv~~ 92 (108)
. +||++=.
T Consensus 74 ~------~IhVvD~ 81 (84)
T cd01789 74 C------RIHVIDV 81 (84)
T ss_pred C------EEEEEeC
Confidence 7 9999854
No 39
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.5e-11 Score=104.68 Aligned_cols=74 Identities=19% Similarity=0.269 Sum_probs=69.0
Q ss_pred EEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEE
Q 033923 8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITM 87 (108)
Q Consensus 8 ~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tv 87 (108)
.|+++++|..+.+ |.++..+||.+||.+|.++.. |+ .+.|||||+||.|.|++++.+|++ +|. +|
T Consensus 4 ~v~vktld~r~~t-~~ig~q~ti~~~~d~~r~~~n----i~---s~~qr~i~~grvl~~~k~vq~~~v-dgk------~~ 68 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRT-FIIGAQMTIKEFKDHIRASVN----IP---SEKQRLIYQGRVLQDDKKVQEYNV-DGK------VI 68 (1143)
T ss_pred ceeeeecccceeE-EEechHHHHHHHHHHHHHhcc----cc---cccceeeecceeeccchhhhhccC-CCe------EE
Confidence 4899999999888 999999999999999999988 88 999999999999999999999999 687 99
Q ss_pred EEEecCCCC
Q 033923 88 HVVLRPSLP 96 (108)
Q Consensus 88 hlv~~~~~~ 96 (108)
|||-|++.+
T Consensus 69 hlverppp~ 77 (1143)
T KOG4248|consen 69 HLVERPPPQ 77 (1143)
T ss_pred EeeccCCCC
Confidence 999997654
No 40
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.12 E-value=1e-09 Score=65.67 Aligned_cols=72 Identities=32% Similarity=0.411 Sum_probs=65.4
Q ss_pred EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEE
Q 033923 9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMH 88 (108)
Q Consensus 9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvh 88 (108)
++++...|+++. +++.+..+|..+|.+|+...+ ++ .+.|++.|.|+.|+|+.+|++|+|..++ ++|
T Consensus 2 ~~~~~~~gk~~~-~~~~~~~~i~~~k~~i~~~~~----~~---~~~q~~~~~~~~l~d~~~l~~~~i~~~~------~~~ 67 (75)
T KOG0001|consen 2 IFVKTLDGKTIT-LEVSPSDTIEVVKAKIRDKEG----IP---VDQQRLIFGGKPLEDGRTLADYNIQEGS------TLH 67 (75)
T ss_pred EEEEecCCCEEE-EEecCCCHHHHHHHHHHhhcC----CC---CeeEEEEECCEECcCCCcHHHhCCCCCC------EEE
Confidence 456678899988 999999999999999999988 77 8999999999999999999999999886 899
Q ss_pred EEecCC
Q 033923 89 VVLRPS 94 (108)
Q Consensus 89 lv~~~~ 94 (108)
++.+..
T Consensus 68 l~~~~~ 73 (75)
T KOG0001|consen 68 LVLSLR 73 (75)
T ss_pred EEEecC
Confidence 988775
No 41
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.94 E-value=5e-09 Score=67.47 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=56.1
Q ss_pred EEEEEEeCCC--CeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEc--------CcccCCCCcccccCCC
Q 033923 7 IELKFRLADG--ADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA--------GKILEDNMTIAESRLP 76 (108)
Q Consensus 7 i~i~~r~~~g--~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~--------Gk~L~D~~tL~~~~i~ 76 (108)
+.|.|..... ...+ .++++++||++||++|+..+| ++ ++.|||.+. -.+..|+.+|+.|++.
T Consensus 2 v~l~It~~~~~~~~~e-kr~~~~~Tv~eLK~kl~~~~G----i~---~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~ 73 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVE-KRFPKSITVSELKQKLEKLTG----IP---PSDMRLQLKSDKDDSKIEELDDDDATLGSYGIK 73 (87)
T ss_dssp EEEEEEESSSSSSEEE-EEEETTSBHHHHHHHHHHHHT----S----TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-S
T ss_pred EEEEEEeCCCCCeeEE-EEcCCCCCHHHHHHHHHHHhC----CC---cccEEEEEEecCCCccccccCCCccEeecCCCC
Confidence 5666766544 3665 999999999999999999999 88 999999887 1234678999999999
Q ss_pred CCCCCCcceEEEEEe
Q 033923 77 VVELPGTAITMHVVL 91 (108)
Q Consensus 77 ~~~~~~~~~tvhlv~ 91 (108)
+|. .+|++=
T Consensus 74 dg~------~i~V~D 82 (87)
T PF14560_consen 74 DGM------RIHVVD 82 (87)
T ss_dssp TTE------EEEEEE
T ss_pred CCC------EEEEEe
Confidence 996 888864
No 42
>PLN02560 enoyl-CoA reductase
Probab=98.86 E-value=1.1e-08 Score=79.93 Aligned_cols=66 Identities=24% Similarity=0.283 Sum_probs=55.3
Q ss_pred EEEEEeCCCCee--eeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEc---C----cccCCCCcccccCCCCC
Q 033923 8 ELKFRLADGADI--GPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA---G----KILEDNMTIAESRLPVV 78 (108)
Q Consensus 8 ~i~~r~~~g~~~--~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~---G----k~L~D~~tL~~~~i~~~ 78 (108)
.|.|+..+|+.+ ..++++++.||++||++|+++.+. .+ +++|||++. | +.|.|+++|+++++.++
T Consensus 2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~---~~---~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~g 75 (308)
T PLN02560 2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKK---YY---PSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDG 75 (308)
T ss_pred EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCC---CC---hhheEEEEecCCCCcCccccCCCCCHHhcCCCCC
Confidence 567777788887 349999999999999999998772 25 799999983 4 48899999999999988
Q ss_pred C
Q 033923 79 E 79 (108)
Q Consensus 79 ~ 79 (108)
+
T Consensus 76 s 76 (308)
T PLN02560 76 G 76 (308)
T ss_pred c
Confidence 6
No 43
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.80 E-value=2.1e-08 Score=63.31 Aligned_cols=53 Identities=32% Similarity=0.331 Sum_probs=45.1
Q ss_pred CCcchHHHHHHHHHhhCCCCCcCCCCCCCceEE--EEcCcccCCCCcccccCCCCCCCCCcceEEEE
Q 033923 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQL--IHAGKILEDNMTIAESRLPVVELPGTAITMHV 89 (108)
Q Consensus 25 ~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRL--Iy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhl 89 (108)
+++.||.+||+.|+..++. ++ +++||| ++.|+.|.|+.+|++||+.+|+ ++|+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~---~~---~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~------~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQ---LT---VNRQSLRLEPKGKSLKDDDTLVDLGVGAGA------TLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCC---CC---cceeEEEeCCCCcccCCcccHhhcCCCCCC------EEEE
Confidence 5889999999999988762 34 688888 6999999999999999999886 6765
No 44
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.78 E-value=3.1e-08 Score=67.54 Aligned_cols=78 Identities=15% Similarity=0.184 Sum_probs=58.7
Q ss_pred EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCC-CCcceEE
Q 033923 9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL-PGTAITM 87 (108)
Q Consensus 9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~-~~~~~tv 87 (108)
++++....++.--+++.++.||.+||++|+.-.. .| +++|||+-.+.+|+|++||++||+....+ +.++.+|
T Consensus 3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k----~p---p~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~v 75 (119)
T cd01788 3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILK----RP---PEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATV 75 (119)
T ss_pred eEEEEEecceEEEeecCCcccHHHHHHHHHHHhc----CC---hhHheeecCceeecccccHHHcCccccccccCCCCeE
Confidence 3444444554334899999999999999998776 56 89999997778999999999999954333 2345577
Q ss_pred EEEecC
Q 033923 88 HVVLRP 93 (108)
Q Consensus 88 hlv~~~ 93 (108)
=|..|.
T Consensus 76 gLa~r~ 81 (119)
T cd01788 76 GLAFRS 81 (119)
T ss_pred EEEEec
Confidence 777773
No 45
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.70 E-value=1.4e-07 Score=53.20 Aligned_cols=67 Identities=30% Similarity=0.387 Sum_probs=57.4
Q ss_pred EEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEEEE
Q 033923 11 FRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVV 90 (108)
Q Consensus 11 ~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv 90 (108)
++..+|.... +.+.+.+|+++||++|...++ .+ ++.++|++.|..+.+...+.++++..++ .+++.
T Consensus 2 v~~~~~~~~~-~~~~~~~tv~~l~~~i~~~~~----~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~i~~~ 67 (69)
T cd00196 2 VKLNDGKTVE-LLVPSGTTVADLKEKLAKKLG----LP---PEQQRLLVNGKILPDSLTLEDYGLQDGD------ELVLV 67 (69)
T ss_pred eEecCCCEEE-EEcCCCCcHHHHHHHHHHHHC----cC---hHHeEEEECCeECCCCCcHHHcCCCCCC------EEEEE
Confidence 3444677776 999999999999999999998 56 8999999999999999888899999887 77775
Q ss_pred e
Q 033923 91 L 91 (108)
Q Consensus 91 ~ 91 (108)
.
T Consensus 68 ~ 68 (69)
T cd00196 68 P 68 (69)
T ss_pred e
Confidence 4
No 46
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=98.64 E-value=1e-07 Score=63.32 Aligned_cols=60 Identities=35% Similarity=0.510 Sum_probs=46.7
Q ss_pred EEEEeCCC-CeeeeeEeC--CcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccC
Q 033923 9 LKFRLADG-ADIGPSKFS--PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESR 74 (108)
Q Consensus 9 i~~r~~~g-~~~~~l~v~--~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~ 74 (108)
|.||+.++ -++. +++. .++||..||+.|.+..|.+ .+-..+||||+||+|.|...|+..-
T Consensus 3 l~IRFs~sipDl~-L~I~~~~~~Tv~~LK~lIR~~~p~~-----~s~~rLRlI~~Gr~L~d~t~l~~~l 65 (97)
T PF10302_consen 3 LTIRFSDSIPDLP-LDIPSPNTTTVAWLKQLIRERLPPE-----PSRRRLRLIYAGRLLNDHTDLSSEL 65 (97)
T ss_pred EEEEECCCCCCce-eecCCCCcccHHHHHHHHHhhcCCC-----CccccEEeeecCcccCccchhhhhh
Confidence 45555553 3444 7777 8899999999999999732 2389999999999999998887653
No 47
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.41 E-value=8.7e-07 Score=56.84 Aligned_cols=69 Identities=25% Similarity=0.300 Sum_probs=41.7
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCc----cc--CCCCcccccCCCCC
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK----IL--EDNMTIAESRLPVV 78 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk----~L--~D~~tL~~~~i~~~ 78 (108)
+.+-|+||..+|. .+ +++++++|+++|+++|.+..+ ++ .+.+.| |..+ .| .++.+|+++||..|
T Consensus 3 ~~milRvrS~dG~-~R-ie~~~~~t~~~L~~kI~~~l~----~~---~~~~~L-~~~~~~~~~l~s~~~~tl~~lglkHG 72 (80)
T PF11543_consen 3 SSMILRVRSKDGM-KR-IEVSPSSTLSDLKEKISEQLS----IP---DSSQSL-SKDRNNKEELKSSDSKTLSSLGLKHG 72 (80)
T ss_dssp ---EEEEE-SSEE-EE-EEE-TTSBHHHHHHHHHHHS----------TTT----BSSGGGGGCSSS-TT-CCCCT---TT
T ss_pred ccEEEEEECCCCC-EE-EEcCCcccHHHHHHHHHHHcC----CC---CcceEE-EecCCCCcccccCCcCCHHHcCCCCc
Confidence 4678999999995 46 899999999999999999998 66 566766 3322 34 46789999999999
Q ss_pred CCCCcceEEEE
Q 033923 79 ELPGTAITMHV 89 (108)
Q Consensus 79 ~~~~~~~tvhl 89 (108)
+ .++|
T Consensus 73 d------mlyL 77 (80)
T PF11543_consen 73 D------MLYL 77 (80)
T ss_dssp -------EEE-
T ss_pred c------EEEE
Confidence 8 6655
No 48
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.9e-08 Score=79.39 Aligned_cols=85 Identities=21% Similarity=0.210 Sum_probs=65.6
Q ss_pred CCceEEEEEEeCCC--CeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCC
Q 033923 3 GEDLIELKFRLADG--ADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL 80 (108)
Q Consensus 3 ~~~~i~i~~r~~~g--~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~ 80 (108)
.|..+.+.++..+. ++.. +..+..|||++||.+++..+|+ .|. ..+|||||+||.|.|...|++.-++...
T Consensus 6 ~e~~v~lliks~Nq~y~dl~-i~~dl~wtv~~Lk~hls~VyPs----kpl-~~dqrliYsgkllld~qcl~d~lrkq~k- 78 (391)
T KOG4583|consen 6 FEFPVTLLIKSPNQSYKDLS-ISLDLKWTVGDLKVHLSQVYPS----KPL-ELDQRLIYSGKLLLDHQCLTDWLRKQVK- 78 (391)
T ss_pred CCcceEEEecCCCcccccee-eehhhhhhHHHHhhhHhhcCCC----CCc-hhhHHHHhhccccccchhHHHHHHHHHH-
Confidence 45667777777654 4555 7888999999999999999994 566 8999999999999999999997444332
Q ss_pred CCcceEEEEEecCCCCC
Q 033923 81 PGTAITMHVVLRPSLPD 97 (108)
Q Consensus 81 ~~~~~tvhlv~~~~~~~ 97 (108)
-+++|||+..+...
T Consensus 79 ---~Hv~hlvcnsk~v~ 92 (391)
T KOG4583|consen 79 ---EHVKHLVCNSKEVV 92 (391)
T ss_pred ---HHHHHHhcCCCCCC
Confidence 24778887765543
No 49
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.2e-06 Score=69.33 Aligned_cols=60 Identities=28% Similarity=0.479 Sum_probs=53.9
Q ss_pred eeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEEEE-ecC
Q 033923 21 PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVV-LRP 93 (108)
Q Consensus 21 ~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv-~~~ 93 (108)
+++++.+.+|.+||+.++.+.+ +| ++++|+||+||.|.|+.++..|.+...+ .+|++ .||
T Consensus 17 ~v~v~~~t~I~~lke~Vak~~g----vp---~D~L~viFaGKeLs~~ttv~~cDL~qqs------~~hi~~lRP 77 (446)
T KOG0006|consen 17 PVEVDSDTSIFQLKEVVAKRQG----VP---ADQLRVIFAGKELSNDTTVQNCDLSQQS------ATHIMLLRP 77 (446)
T ss_pred eEEEecCCCHHHHHHHHHHhhC----CC---hhheEEEEeccccccCceeecccccccc------hhhhhccCc
Confidence 3899999999999999999999 88 9999999999999999999999887665 67877 555
No 50
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.17 E-value=7.6e-06 Score=52.14 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=53.2
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEc---C--cccCCCCcccccCCCC
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA---G--KILEDNMTIAESRLPV 77 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~---G--k~L~D~~tL~~~~i~~ 77 (108)
|+|.|.-..+.+.. +.|.|..+|..+|++|+..|+ + ...|||-|. | +.|.+.++|++|||=-
T Consensus 1 iqVtV~q~g~~dl~-l~vnPy~pI~k~K~kI~~~~~----~----~g~qrLsfQepgg~rqlL~s~~sLA~yGiFs 67 (80)
T cd01811 1 IQVTVEQTGYSDWI-LRVNPYSPIRKIKEKIRRSRN----C----SGLQRLSFQEPGGERQLLSSRKSLADYGIFS 67 (80)
T ss_pred CEEEeeecCCCceE-EEeCCcchHHHHHHHHHHhhC----c----ccceEEEeecCCcccccccccccHhhhccee
Confidence 46777777888887 999999999999999999999 4 589999995 2 3778999999999863
No 51
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=98.16 E-value=1.8e-05 Score=49.97 Aligned_cols=70 Identities=23% Similarity=0.377 Sum_probs=55.7
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCcccCCC--CcccccCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILEDN--MTIAESRLPVV 78 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L~D~--~tL~~~~i~~~ 78 (108)
++..+.|.||+.+|+.+. -.|.+++||.+|.+-|...... + . ....+|+ |-.+.|.++ .+|+++++-++
T Consensus 3 ~~~~~~I~vRlpdG~~l~-~~F~~~~tl~~l~~~v~~~~~~----~-~-~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~ 75 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRLQ-RRFPKSDTLQDLYDFVESQLFS----P-E-ESDFELITAFPRRELTDEDSKTLEEAGLLPS 75 (82)
T ss_dssp TSSEEEEEEEETTSTEEE-EEEETTSBHHHHHHHHHHHHHC----T-T-TSSEEEEESSSTEECCSTTTSBTCCCTTSSC
T ss_pred CCCEEEEEEECCCCCEEE-EEECCcchHHHHHHHHHHhcCC----C-C-CccEEEEeCCCCcCCCccccccHHHhcCCCC
Confidence 567899999999999988 9999999999999999987662 2 1 2236776 667777554 69999988866
Q ss_pred C
Q 033923 79 E 79 (108)
Q Consensus 79 ~ 79 (108)
.
T Consensus 76 ~ 76 (82)
T PF00789_consen 76 A 76 (82)
T ss_dssp E
T ss_pred e
Confidence 4
No 52
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=98.07 E-value=5.7e-05 Score=48.18 Aligned_cols=68 Identities=25% Similarity=0.417 Sum_probs=55.2
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCcccC-CCCcccccCCCCC
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILE-DNMTIAESRLPVV 78 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L~-D~~tL~~~~i~~~ 78 (108)
+....|.||+.+|+.+. ..|..++||++|.+-|....+. .. .....|+ |-.|.|. ++.||+++|+.+.
T Consensus 2 ~p~t~iqiRlpdG~r~~-~rF~~~~tv~~l~~~v~~~~~~---~~---~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s 72 (79)
T cd01770 2 EPTTSIQIRLADGKRLV-QKFNSSHRVSDVRDFIVNARPE---FA---ARPFTLMTAFPVKELSDESLTLKEANLLNA 72 (79)
T ss_pred CCeeEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHhCCC---CC---CCCEEEecCCCCcccCCCCCcHHHCCCcCc
Confidence 56789999999999998 9999999999999999987652 11 3566675 6788774 4789999999854
No 53
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=2.8e-05 Score=58.19 Aligned_cols=68 Identities=18% Similarity=0.173 Sum_probs=58.9
Q ss_pred CceEEEEEEeC-CCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 4 EDLIELKFRLA-DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 4 ~~~i~i~~r~~-~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
..+..++.|+. .++++. +.+...+||+++|.++....+ +. +-.||++|+|++|.|...|.+|++..+.
T Consensus 143 ~~e~~lk~rlTtT~~d~~-lta~~~Dtv~eik~~L~Aaeg----~D---~~sQrif~Sg~~l~dkt~LeEc~iekg~ 211 (231)
T KOG0013|consen 143 HTEPILKLRLTTTREDFW-LTAPHYDTVGEIKRALRAAEG----VD---PLSQRIFFSGGVLVDKTDLEECKIEKGQ 211 (231)
T ss_pred CCCcchHHHhhhhhhhee-ecccCcCcHHHHHHHHHHhhc----cc---hhhheeeccCCceeccccceeeeecCCC
Confidence 34556677776 778887 899999999999999999998 44 7899999999999999999999999883
No 54
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0004 Score=46.32 Aligned_cols=79 Identities=19% Similarity=0.235 Sum_probs=66.7
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~ 83 (108)
++.|.|+|.--+|..+. |.+..++....|...-..+.| +. .+.+|++|.|+.+.+.+|-++.++.+++
T Consensus 18 ~~hi~LKV~gqd~~~~~-Fkikr~t~LkKLM~aYc~r~G----l~---~~s~RFlFdG~rI~~~~TP~~L~mEd~D---- 85 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVV-FKIKRHTPLKKLMKAYCERQG----LS---MNSLRFLFDGQRIRETHTPADLEMEDGD---- 85 (99)
T ss_pred cceEEEEEecCCCCEEE-EEeecCChHHHHHHHHHHHcC----Cc---cceEEEEECCcCcCCCCChhhhCCcCCc----
Confidence 35677777776777766 999999999999999999999 66 8999999999999999999999999998
Q ss_pred ceEEEEEecCCCC
Q 033923 84 AITMHVVLRPSLP 96 (108)
Q Consensus 84 ~~tvhlv~~~~~~ 96 (108)
.+-++....++
T Consensus 86 --~Iev~~~q~gG 96 (99)
T KOG1769|consen 86 --EIEVVQEQTGG 96 (99)
T ss_pred --EEEEEeecccC
Confidence 66666655444
No 55
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.78 E-value=7.7e-05 Score=49.77 Aligned_cols=74 Identities=20% Similarity=0.242 Sum_probs=53.0
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC--cccCCCCcccccCCCCCCC-CCc
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG--KILEDNMTIAESRLPVVEL-PGT 83 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G--k~L~D~~tL~~~~i~~~~~-~~~ 83 (108)
+.|.||. .++.--+.++++.||-+||.+++.-.. -| ++.|||.-.- ++|+|..+|++||+....+ +.+
T Consensus 3 ~f~~VrR--~kttif~da~es~tV~elK~~l~gi~~----~P---vn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q~ 73 (110)
T KOG4495|consen 3 VFLRVRR--HKTTIFTDAKESSTVFELKRKLEGILK----RP---VNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQA 73 (110)
T ss_pred eeeeeee--cceeEEeecCccccHHHHHHHHHHHHh----CC---CcchheeecCHHHHhhccchhhhccccccccccCC
Confidence 3444444 443333899999999999999998655 35 8999997633 5889999999998764443 445
Q ss_pred ceEEEE
Q 033923 84 AITMHV 89 (108)
Q Consensus 84 ~~tvhl 89 (108)
+.++-|
T Consensus 74 pA~vgL 79 (110)
T KOG4495|consen 74 PATVGL 79 (110)
T ss_pred Cceeee
Confidence 556544
No 56
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.70 E-value=0.00058 Score=43.10 Aligned_cols=67 Identities=21% Similarity=0.321 Sum_probs=52.2
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCcccCC---CCcccccCCCCC
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILED---NMTIAESRLPVV 78 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L~D---~~tL~~~~i~~~ 78 (108)
+....|.||+.+|+.+. -.+.+++||.+|.+-|....+ .. ....+|+ |-.|.|.+ +.+|.++++-+.
T Consensus 2 ~~~~~I~iRlPdG~ri~-~~F~~~~tl~~v~~~v~~~~~----~~---~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~ 73 (80)
T smart00166 2 SDQCRLQIRLPDGSRLV-RRFPSSDTLRTVYEFVSAALT----DG---NDPFTLNSPFPRRTFTKDDYSKTLLELALLPS 73 (80)
T ss_pred CCeEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHHccc----CC---CCCEEEEeCCCCcCCccccccCCHHHCCCCCc
Confidence 36789999999999998 999999999999999966554 22 3455664 56677754 479999998655
No 57
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.66 E-value=0.0008 Score=43.47 Aligned_cols=67 Identities=19% Similarity=0.347 Sum_probs=55.4
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC--cccC--------CCCccccc
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG--KILE--------DNMTIAES 73 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G--k~L~--------D~~tL~~~ 73 (108)
.+.+.|.||+.+|+.+. -.|..++||.+|.+-|.. .+ .. +...+|+++- |.+. .+.||.+.
T Consensus 2 ~~~~~I~iRlp~G~Rl~-rrF~~~~tl~~l~~fv~~-~~----~~---~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~ea 72 (85)
T cd01774 2 PDTVKIVFKLPNGTRVE-RRFLFTQSLRVIHDFLFS-LK----ET---PEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEA 72 (85)
T ss_pred CceEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHh-CC----CC---CCcEEEecCCCCccccccccccCcCCCCHHHc
Confidence 35789999999999987 899999999999999964 34 24 6789999887 8885 36799999
Q ss_pred CCCCCC
Q 033923 74 RLPVVE 79 (108)
Q Consensus 74 ~i~~~~ 79 (108)
||.+..
T Consensus 73 GL~~s~ 78 (85)
T cd01774 73 GLSNSE 78 (85)
T ss_pred CCCCcc
Confidence 998653
No 58
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.48 E-value=0.00037 Score=43.98 Aligned_cols=71 Identities=14% Similarity=0.224 Sum_probs=47.0
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE-EcCcccCCCCcccccCCCCCC
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI-HAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI-y~Gk~L~D~~tL~~~~i~~~~ 79 (108)
+.|.|...+|..+. +.++.+.+|++|...|.+..+... ..+......+|. -.|+.|.++.+|+++++.+|+
T Consensus 3 ~rVtv~~~~~~~~D-l~lP~~vpv~~li~~l~~~~~~~~-~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd 74 (79)
T PF08817_consen 3 CRVTVDAGNGRQVD-LALPADVPVAELIPELVELLGLPG-DDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGD 74 (79)
T ss_dssp EEEEEE-TT--EEE-EEEETTSBTTHHHHHHHHHS---S----TT-E-EEEG-GGTEEEETTSBCGGGT--TT-
T ss_pred EEEEEEcCCCcEEE-EEcCCCCcHHHHHHHHHHHhCCcc-CCCCCcceEEEEecCCcccCCcCcHhHcCCCCCC
Confidence 56777776678887 999999999999999999877321 111111246676 678899999999999999998
No 59
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.45 E-value=0.0015 Score=41.34 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=52.4
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCcccCC---CCcccccCCCCC
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILED---NMTIAESRLPVV 78 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L~D---~~tL~~~~i~~~ 78 (108)
.....|.||+.+|+.+. -.+..++|+.+|.+-|....+. .....|+ |-.|.+.+ +.||.++|+.+.
T Consensus 2 ~~~~~i~iRlp~G~~~~-~~F~~~~tl~~v~~fV~~~~~~--------~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Ps 72 (79)
T cd01772 2 YTETRIQIRLLDGTTLK-QTFKAREQLAAVRLFVELNTGN--------GGPFTLMTPFPRKVFTEDDMEKPLQELGLVPS 72 (79)
T ss_pred CcEEEEEEECCCCCEEE-EEeCCCChHHHHHHHHHHcCCC--------CCCEEEEeCCCCeECCcccccCCHHHCCCCCc
Confidence 45688999999999988 8999999999999999976552 2344554 56677753 489999998865
Q ss_pred C
Q 033923 79 E 79 (108)
Q Consensus 79 ~ 79 (108)
.
T Consensus 73 a 73 (79)
T cd01772 73 A 73 (79)
T ss_pred e
Confidence 3
No 60
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.43 E-value=0.00099 Score=41.67 Aligned_cols=64 Identities=22% Similarity=0.437 Sum_probs=51.2
Q ss_pred eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCcccCC---CCcccccCCCCC
Q 033923 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILED---NMTIAESRLPVV 78 (108)
Q Consensus 6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L~D---~~tL~~~~i~~~ 78 (108)
...|.||+.+|+.+. -.+..++||.+|.+-|...... ....+|+ |-.|.+.| +.+|.++|+.+.
T Consensus 2 ~t~i~iRlpdG~~~~-~~F~~~~tl~~l~~fv~~~~~~--------~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s 70 (77)
T cd01767 2 TTKIQIRLPDGKRLE-QRFNSTHKLSDVRDFVESNGPP--------AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNE 70 (77)
T ss_pred cEEEEEEcCCCCEEE-EEeCCCCCHHHHHHHHHHcCCC--------CCCEEEEeCCCCccCCCCCccCcHHHcCCccc
Confidence 568999999999988 9999999999999999876551 3455565 45677754 789999999843
No 61
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=4.3e-05 Score=47.55 Aligned_cols=63 Identities=17% Similarity=0.195 Sum_probs=50.8
Q ss_pred EEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCC
Q 033923 8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVV 78 (108)
Q Consensus 8 ~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~ 78 (108)
++.+.---|+.++ +.+.+++||+++|..|+.+.|. . ++...|---+-++.|.-+|++|-|.+|
T Consensus 3 ev~~nDrLGKKVR-vKCn~dDtiGD~KKliaaQtGT----~---~~kivl~k~~~i~kd~I~L~dyeihdg 65 (73)
T KOG3493|consen 3 EVVLNDRLGKKVR-VKCNTDDTIGDLKKLIAAQTGT----R---PEKIVLKKWYTIFKDHITLSDYEIHDG 65 (73)
T ss_pred eehhhhhcCceEE-EEeCCcccccCHHHHHHHhhCC----C---hhHhHHHhhhhhhhcccceeeEEeccC
Confidence 4444445689998 9999999999999999999994 4 566666555568899999999999877
No 62
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.30 E-value=0.0028 Score=45.74 Aligned_cols=81 Identities=21% Similarity=0.280 Sum_probs=56.9
Q ss_pred EEEEEEeCCC----CeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCc-eEEEEc-Cccc--CCCCcccccCCCCC
Q 033923 7 IELKFRLADG----ADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNN-VQLIHA-GKIL--EDNMTIAESRLPVV 78 (108)
Q Consensus 7 i~i~~r~~~g----~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~-qRLIy~-Gk~L--~D~~tL~~~~i~~~ 78 (108)
|+|+|+..+| .++. +.++++.||.+|+.+|....+ ++ ... +-|.+. ++.| .++..++.+.-...
T Consensus 1 i~Vlvss~~g~~lp~tl~-~~lp~~ttv~dL~~~l~~~~~----~~---~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~ 72 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLS-LSLPSTTTVSDLKDRLSERLP----IP---SSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQ 72 (162)
T ss_pred CeEEEecCCCCCCCCeEE-eeCCCCCcHHHHHHHHHhhcC----CC---ccceeEEEEeCCCeeCCCccccHHhhccCcC
Confidence 5789999999 4776 999999999999999999988 44 333 344442 3444 45555666543322
Q ss_pred CCCCcceEEEEEecCCCCC
Q 033923 79 ELPGTAITMHVVLRPSLPD 97 (108)
Q Consensus 79 ~~~~~~~tvhlv~~~~~~~ 97 (108)
+ ....+++|..+..+++
T Consensus 73 ~--~~~~~l~l~~rl~GGK 89 (162)
T PF13019_consen 73 D--SDFITLRLSLRLRGGK 89 (162)
T ss_pred C--CCceEEEEEEeccCCC
Confidence 2 1356899999988875
No 63
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0022 Score=52.88 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=60.2
Q ss_pred EEEEeCCCCeeeeeE-eCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEE
Q 033923 9 LKFRLADGADIGPSK-FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITM 87 (108)
Q Consensus 9 i~~r~~~g~~~~~l~-v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tv 87 (108)
|.|+- .|+... ++ ++.++|+..||++|+...+ ++ |++||+.+.|+.+.|+--+....|.++. ++
T Consensus 6 v~VKW-~gk~y~-v~~l~~d~t~~vlKaqlf~LTg----V~---PeRQKv~vKGg~a~dd~~~~al~iKpn~------~l 70 (473)
T KOG1872|consen 6 VIVKW-GGKKYP-VETLSTDETPSVLKAQLFALTG----VP---PERQKVMVKGGLAKDDVDWGALQIKPNE------TL 70 (473)
T ss_pred Eeeee-cCcccc-ceeccCCCchHHHHHHHHHhcC----CC---ccceeEEEecccccccccccccccCCCC------EE
Confidence 44433 344444 55 8999999999999999999 77 8999999999999999888899999986 89
Q ss_pred EEEecCCCC
Q 033923 88 HVVLRPSLP 96 (108)
Q Consensus 88 hlv~~~~~~ 96 (108)
+++-.....
T Consensus 71 mMmGt~e~~ 79 (473)
T KOG1872|consen 71 MMMGTAEAG 79 (473)
T ss_pred Eeecccccc
Confidence 888776543
No 64
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.12 E-value=0.0088 Score=38.17 Aligned_cols=68 Identities=25% Similarity=0.354 Sum_probs=54.4
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCcccC--C-CCcccccCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILE--D-NMTIAESRLPV 77 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L~--D-~~tL~~~~i~~ 77 (108)
+++.+.|.||+.+|..+. -.+..++++.+|-.-|... + .+ +...+|+ |--|.+. | +.+|.+.|+..
T Consensus 1 ~~~~~~i~iRlP~G~r~~-rrF~~t~~L~~l~~fv~~~-~----~~---~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p 71 (80)
T cd01771 1 GEPISKLRVRTPSGDFLE-RRFLGDTPLQVLLNFVASK-G----YP---IDEYKLLSSWPRRDLTQLDPNFTLLELKLYP 71 (80)
T ss_pred CCCeEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHhc-C----CC---CCCEEEecCCCCCCCcCCCCCCcHHHcCCCC
Confidence 578899999999999987 8999999999999999865 3 33 4567775 6667774 2 46899999886
Q ss_pred CC
Q 033923 78 VE 79 (108)
Q Consensus 78 ~~ 79 (108)
..
T Consensus 72 ~~ 73 (80)
T cd01771 72 QE 73 (80)
T ss_pred Cc
Confidence 54
No 65
>COG5417 Uncharacterized small protein [Function unknown]
Probab=97.02 E-value=0.01 Score=37.92 Aligned_cols=71 Identities=6% Similarity=0.142 Sum_probs=59.9
Q ss_pred eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
.+.+-|+--.|.++. ++++.-.+|..|-..+++...-+ +++.+-..+|..-.+++|.+++.|.+|+|.+|+
T Consensus 6 kVTvD~t~y~g~~yD-Lrl~d~~pikklIdivwe~~kis--~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD 76 (81)
T COG5417 6 KVTVDFTNYNGGTYD-LRLPDYLPIKKLIDIVWESLKIS--IFDREGTQIKVMNKAQLLSGDDKLIDYQIADGD 76 (81)
T ss_pred EEEEEeEecCCceEE-EeccccchHHHHHHHHHHHhhcc--ccccCCCEEEEeccceEecCCceEEeccccCCC
Confidence 456666667899998 99999999999999999876632 455556789999999999999999999999998
No 66
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.011 Score=39.21 Aligned_cols=68 Identities=22% Similarity=0.269 Sum_probs=58.4
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
.+-|.|++---+|.++- |.+..+++-..|-.......|. . .+.+|++|.|+.++-++|-++.++.+++
T Consensus 22 t~hinLkvv~qd~telf-FkiKktT~f~klm~af~~rqGK----~---m~slRfL~dG~rI~~dqTP~dldmEdnd 89 (103)
T COG5227 22 TKHINLKVVDQDGTELF-FKIKKTTTFKKLMDAFSRRQGK----N---MSSLRFLFDGKRIDLDQTPGDLDMEDND 89 (103)
T ss_pred ccccceEEecCCCCEEE-EEEeccchHHHHHHHHHHHhCc----C---cceeEEEEcceecCCCCChhhcCCccch
Confidence 44566777667888887 9999999999999888888884 3 8999999999999999999999998876
No 67
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.68 E-value=0.037 Score=35.71 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=53.9
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCcccC---CCCcccccCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILE---DNMTIAESRLPV 77 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L~---D~~tL~~~~i~~ 77 (108)
.+....|.||+.+|+.+. -.+..++++.+|-.-+.. ++ .+ ++...|+ |--|.+. .+.||.++|+.+
T Consensus 2 ~~~~t~i~vRlP~G~r~~-rrF~~~~~L~~v~~fv~~-~g----~~---~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P 72 (82)
T cd01773 2 NGPKARLMLRYPDGKREQ-IALPEQAKLLALVRHVQS-KG----YP---NERFELLTNFPRRKLSHLDYDITLQEAGLCP 72 (82)
T ss_pred CCCeeEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHh-cC----CC---CCCEEEecCCCCcccCCcccCCCHHHcCCCC
Confidence 456789999999999998 999999999999988887 45 34 5677775 5556663 357999999987
Q ss_pred CC
Q 033923 78 VE 79 (108)
Q Consensus 78 ~~ 79 (108)
..
T Consensus 73 ~~ 74 (82)
T cd01773 73 QE 74 (82)
T ss_pred Cc
Confidence 64
No 68
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=95.77 E-value=0.03 Score=45.25 Aligned_cols=69 Identities=28% Similarity=0.365 Sum_probs=55.0
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEE--cCcccC-CCCcccccCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH--AGKILE-DNMTIAESRLPVV 78 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy--~Gk~L~-D~~tL~~~~i~~~ 78 (108)
.+.+-.|.||+.+|..+. ..|..+-||.+++..|....+.+ + ...+-|++ --|.|. |+.||++.++.+.
T Consensus 302 ~~PtTsIQIRLanG~RlV-~~fN~sHTv~DIR~fI~~aRp~~---~---~~~F~L~~~FPpk~l~D~sqTle~AgL~Ns 373 (380)
T KOG2086|consen 302 AEPTTSIQIRLANGTRLV-LKFNHSHTVSDIREFIDTARPGD---S---STYFILMMAFPPKPLSDDSQTLEEAGLLNS 373 (380)
T ss_pred CCCcceEEEEecCCceee-eeccCcccHHHHHHHHHhcCCCC---c---CCceeeeecCCCcccCCcchhHHhccchhh
Confidence 466779999999999886 99999999999999999988853 2 34555554 446774 5789999999854
No 69
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.077 Score=40.00 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=46.4
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEE-EEcC-----ccc-CCCCcccccCCCCCCCCCcceEEEEEecCC
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQL-IHAG-----KIL-EDNMTIAESRLPVVELPGTAITMHVVLRPS 94 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRL-Iy~G-----k~L-~D~~tL~~~~i~~~~~~~~~~tvhlv~~~~ 94 (108)
-+++++.||.+||.+|+...| .+ ++.++| +|.| -.| .++..|..|+..+|- .||++=...
T Consensus 17 kr~~~~ltl~q~K~KLe~~~G----~~---~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~------rihviD~~~ 83 (234)
T KOG3206|consen 17 KRLSNSLTLAQFKDKLELLTG----TE---AESMELELYDGDDKKVSALSNEDADLGFYKVEDGL------RIHVIDSNA 83 (234)
T ss_pred hhcCCcCcHHHHHhhhhhhhC----CC---ccceEEEEEcCCCceeeeccCCcccccccCCCCce------EEEEEecCc
Confidence 677899999999999999999 45 677777 5666 234 556789999888874 788875543
No 70
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.25 E-value=0.072 Score=33.62 Aligned_cols=58 Identities=24% Similarity=0.312 Sum_probs=45.7
Q ss_pred eCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCccccc-CCCCCCCCCcceEEEEEecC
Q 033923 24 FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAES-RLPVVELPGTAITMHVVLRP 93 (108)
Q Consensus 24 v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~-~i~~~~~~~~~~tvhlv~~~ 93 (108)
|.++++|.++++-|...... -. -....|.++|+.|.|...|++. ++.++. +++++..|
T Consensus 1 v~~~d~v~dvrq~L~~~~~t---~~---~Tn~~L~~~g~~L~~~~el~~i~~~~~~~------~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPET---CY---LTNFSLEHNGQRLDDFVELSEIEGIKDGC------VLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhCccc---cc---eeEEEEEECCCccCCchhhhhhhCCCCCc------EEEEEecC
Confidence 46789999999999876431 12 7899999999999998999887 577654 78888655
No 71
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=95.16 E-value=0.071 Score=34.69 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=32.4
Q ss_pred EEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCC
Q 033923 8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPK 43 (108)
Q Consensus 8 ~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~ 43 (108)
..||+...|..+. |.+.|++++.+|++.|.++.+.
T Consensus 2 ~FK~~~~~GrvhR-f~~~~s~~~~~L~~~I~~Rl~~ 36 (86)
T cd06409 2 AFKFKDPKGRVHR-FRLRPSESLEELRTLISQRLGD 36 (86)
T ss_pred cEEeeCCCCCEEE-EEecCCCCHHHHHHHHHHHhCC
Confidence 4688899999999 9999999999999999999984
No 72
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=94.85 E-value=0.26 Score=30.29 Aligned_cols=71 Identities=18% Similarity=0.179 Sum_probs=53.6
Q ss_pred EEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEE----cC--cccCCCCcccccCCCCCCCCCcc
Q 033923 11 FRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH----AG--KILEDNMTIAESRLPVVELPGTA 84 (108)
Q Consensus 11 ~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy----~G--k~L~D~~tL~~~~i~~~~~~~~~ 84 (108)
|+++||.... +.+++++|+.+|=+.|.+..+ +. +.+..=|.| .| ..|+.+++|.+...... .+
T Consensus 1 V~llD~~~~~-~~v~~~~t~~~l~~~v~~~l~----l~--e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~----~~ 69 (80)
T PF09379_consen 1 VRLLDGTTKT-FEVDPKTTGQDLLEQVCDKLG----LK--EKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNN----PP 69 (80)
T ss_dssp EEESSEEEEE-EEEETTSBHHHHHHHHHHHHT----TS--SGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSS----SS
T ss_pred CCCcCCCcEE-EEEcCCCcHHHHHHHHHHHcC----CC--CccEEEEEEeecCCCcceeccCcccHHHHcCCCC----CC
Confidence 5789999888 999999999999999999988 43 278888888 22 36788888888865522 24
Q ss_pred eEEEEEec
Q 033923 85 ITMHVVLR 92 (108)
Q Consensus 85 ~tvhlv~~ 92 (108)
.++++-++
T Consensus 70 ~~l~frvk 77 (80)
T PF09379_consen 70 FTLYFRVK 77 (80)
T ss_dssp EEEEEEES
T ss_pred EEEEEEEE
Confidence 57777664
No 73
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=93.95 E-value=0.36 Score=29.72 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=41.0
Q ss_pred eCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 13 LADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 13 ~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
..++.... +.+.|++++.++-+..-.+.+ +. ++.-.|.|++|.|+-+.++.-.|+++|.
T Consensus 3 ~~~~rr~~-vkvtp~~~l~~VL~eac~k~~----l~---~~~~~L~h~~k~ldlslp~R~snL~n~a 61 (65)
T PF11470_consen 3 CYNFRRFK-VKVTPNTTLNQVLEEACKKFG----LD---PSSYDLKHNNKPLDLSLPFRLSNLPNNA 61 (65)
T ss_dssp -TTS-EEE-E---TTSBHHHHHHHHHHHTT---------GGG-EEEETTEEESSS-BHHHH---SS-
T ss_pred ccCCcEEE-EEECCCCCHHHHHHHHHHHcC----CC---ccceEEEECCEEeccccceeecCCCCCC
Confidence 35677777 999999999999999999998 66 7789999999999888899889998874
No 74
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=91.88 E-value=2.4 Score=29.82 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=46.7
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC------cccCCCCcccccC
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG------KILEDNMTIAESR 74 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G------k~L~D~~tL~~~~ 74 (108)
..+.|+|.+.+|.... +.+++++||.++-+.+..+.+ +. .....-|.+.. ..|....+|.+..
T Consensus 2 ~~~~~~V~l~dg~~~~-~~~~~~~t~~ev~~~v~~~~~----l~--~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~ 70 (207)
T smart00295 2 KPRVLKVYLLDGTTLE-FEVDSSTTAEELLETVCRKLG----IR--ESEYFGLQFEDPDEDLSHWLDPAKTLLDQD 70 (207)
T ss_pred CcEEEEEEecCCCEEE-EEECCCCCHHHHHHHHHHHhC----CC--ccceeEEEEEcCCCCcCeeCCCccCHHHhc
Confidence 4678899999999988 999999999999999999998 53 25555555432 2454455555544
No 75
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=91.51 E-value=1 Score=27.69 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=35.8
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG 61 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G 61 (108)
+.||++. |..+..+.++++.|-.+|+.+|....+ .. ....+|-|..
T Consensus 2 ~~vK~~~--~~~~~~~~~~~~~s~~dL~~~i~~~~~----~~---~~~~~l~Y~D 47 (81)
T smart00666 2 VDVKLRY--GGETRRLSVPRDISFEDLRSKVAKRFG----LD---NQSFTLKYQD 47 (81)
T ss_pred ccEEEEE--CCEEEEEEECCCCCHHHHHHHHHHHhC----CC---CCCeEEEEEC
Confidence 4566666 434444999999999999999999998 44 5788888874
No 76
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=91.46 E-value=1 Score=27.76 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=37.9
Q ss_pred eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC
Q 033923 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG 61 (108)
Q Consensus 6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G 61 (108)
++.||++..++.... +.+..+.|..+|+++|...++ .+ ....+|-|..
T Consensus 1 t~~vK~~~~~~~~~~-~~~~~~~s~~~L~~~i~~~~~----~~---~~~~~l~Y~D 48 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRI-ISLPSDVSFDDLRSKIREKFG----LL---DEDFQLKYKD 48 (84)
T ss_dssp SEEEEEEETTEEEEE-EEECSTSHHHHHHHHHHHHHT----TS---TSSEEEEEEE
T ss_pred CEEEEEEECCeeEEE-EEcCCCCCHHHHHHHHHHHhC----CC---CccEEEEeeC
Confidence 356777666655443 889999999999999999999 44 6899998875
No 77
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=91.33 E-value=0.92 Score=29.15 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=33.5
Q ss_pred eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCc
Q 033923 18 DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK 62 (108)
Q Consensus 18 ~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk 62 (108)
++. +++.+..+..+|+++|.++.. ++ ++..+|-|.-.
T Consensus 12 tIa-Irvp~~~~y~~L~~ki~~kLk----l~---~e~i~LsYkde 48 (80)
T cd06406 12 TVA-IQVARGLSYATLLQKISSKLE----LP---AEHITLSYKSE 48 (80)
T ss_pred EEE-EEcCCCCCHHHHHHHHHHHhC----CC---chhcEEEeccC
Confidence 777 999999999999999999998 77 78999999765
No 78
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=91.00 E-value=2.1 Score=26.00 Aligned_cols=57 Identities=16% Similarity=0.245 Sum_probs=39.4
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEEEEec
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLR 92 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv~~ 92 (108)
++++...||.+|.+.+..+++...... ....++.-+|+...+ +.-+.+++ .+.++..
T Consensus 20 ~~~~~~~tv~~ll~~l~~~~~~~~~~~---~~~~~v~vNg~~v~~-----~~~l~~gD------~v~i~pp 76 (80)
T cd00754 20 LELPEGATVGELLDALEARYPGLLEEL---LARVRIAVNGEYVRL-----DTPLKDGD------EVAIIPP 76 (80)
T ss_pred EECCCCCcHHHHHHHHHHHCchHHHhh---hhcEEEEECCeEcCC-----CcccCCCC------EEEEeCC
Confidence 788888999999999999876200001 456778888988863 44567777 6655543
No 79
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=89.88 E-value=1.1 Score=27.88 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=39.4
Q ss_pred EEEEEEeC------CCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 7 IELKFRLA------DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 7 i~i~~r~~------~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
+.|+|++. .|.....++++...||++|++.|....|. .. ..-....+..+|+...++ .-+.+|+
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~---l~-~~~~~~~vavN~~~v~~~-----~~l~dgD 71 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPS---LE-EVRSCCVLALNEEYTTES-----AALKDGD 71 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChh---HH-HHhhCcEEEECCEEcCCC-----cCcCCCC
Confidence 45666663 45433348888899999999999887652 11 001224466778776543 3456676
No 80
>smart00455 RBD Raf-like Ras-binding domain.
Probab=88.05 E-value=2.3 Score=26.29 Aligned_cols=45 Identities=20% Similarity=0.151 Sum_probs=38.5
Q ss_pred EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC
Q 033923 9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG 61 (108)
Q Consensus 9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G 61 (108)
.++-+.+|+.+. +.+.|..||.++-+.+-++.+ +. ++...+...|
T Consensus 2 ~~v~LP~~~~~~-V~vrpg~tl~e~L~~~~~kr~----l~---~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPDNQRTV-VKVRPGKTVRDALAKALKKRG----LN---PECCVVRLRG 46 (70)
T ss_pred eEEECCCCCEEE-EEECCCCCHHHHHHHHHHHcC----CC---HHHEEEEEcC
Confidence 456678999988 999999999999999999999 76 7777777755
No 81
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=88.05 E-value=1.7 Score=30.10 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=36.4
Q ss_pred EeCC-cchHHHHHHHHHhhCCCCCcCCC---CCCCceEEEEcC-----------------ccc---CCCCcccccCCCCC
Q 033923 23 KFSP-TTTVASLKEKIISRWPKEKENGP---KTVNNVQLIHAG-----------------KIL---EDNMTIAESRLPVV 78 (108)
Q Consensus 23 ~v~~-~~TV~~LK~~I~~~~~~~~~i~p---~~~~~qRLIy~G-----------------k~L---~D~~tL~~~~i~~~ 78 (108)
.++. +.||++|++.+.+.-..+..++| -..+.+++++.. -+| .|+.+|.+||+.++
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 3676 99999999998876443222333 124556665542 255 67788888888876
No 82
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=86.53 E-value=2.8 Score=26.19 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=35.9
Q ss_pred EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC
Q 033923 9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG 61 (108)
Q Consensus 9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G 61 (108)
+++-+.+|.... +.+.|.+||.++-+++-++.+ +.|+ .-.+++...+
T Consensus 2 ~~V~LPng~~t~-V~vrpg~ti~d~L~~~c~kr~----l~~~-~~~v~~~~~~ 48 (72)
T cd01760 2 CRVYLPNGQRTV-VPVRPGMSVRDVLAKACKKRG----LNPE-CCDVFLLGLD 48 (72)
T ss_pred EEEECcCCCeEE-EEECCCCCHHHHHHHHHHHcC----CCHH-HEEEEEecCC
Confidence 466789999887 999999999999999999999 7633 3334444444
No 83
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=86.30 E-value=2.8 Score=26.69 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=29.1
Q ss_pred CCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEc
Q 033923 15 DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60 (108)
Q Consensus 15 ~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~ 60 (108)
.|..+. +.++++++..+|+++|....+ +. +.....|-|.
T Consensus 8 ~~d~~r-~~l~~~~~~~~L~~~i~~r~~----~~--~~~~f~LkY~ 46 (82)
T cd06407 8 GEEKIR-FRLPPSWGFTELKQEIAKRFK----LD--DMSAFDLKYL 46 (82)
T ss_pred CCeEEE-EEcCCCCCHHHHHHHHHHHhC----CC--CCCeeEEEEE
Confidence 344555 999999999999999999988 33 1256666554
No 84
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=85.38 E-value=6.6 Score=24.19 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=38.6
Q ss_pred CCCeeeeeEeCCc-chHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 15 DGADIGPSKFSPT-TTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 15 ~g~~~~~l~v~~~-~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
.|.....++++.. .||.+|++.|.+..+. ... ....+++..+|+...+ +.-+++++
T Consensus 13 ~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~---l~~-~~~~~~v~vn~~~v~~-----~~~l~dgD 69 (80)
T TIGR01682 13 AGTDEETLELPDESTTVGELKEHLAKEGPE---LAA-SRGQVMVAVNEEYVTD-----DALLNEGD 69 (80)
T ss_pred hCCCeEEEECCCCCcCHHHHHHHHHHhCch---hhh-hccceEEEECCEEcCC-----CcCcCCCC
Confidence 4554334788876 8999999999998762 210 0356778888988875 34567776
No 85
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=84.43 E-value=3.8 Score=34.80 Aligned_cols=81 Identities=26% Similarity=0.386 Sum_probs=47.3
Q ss_pred ceEEEEEEeCCC--CeeeeeEeCCcchHHHHHHHHHhhCCCCCc--CCCCCCCceEEEE--c--Cc-ccCCCC-------
Q 033923 5 DLIELKFRLADG--ADIGPSKFSPTTTVASLKEKIISRWPKEKE--NGPKTVNNVQLIH--A--GK-ILEDNM------- 68 (108)
Q Consensus 5 ~~i~i~~r~~~g--~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~--i~p~~~~~qRLIy--~--Gk-~L~D~~------- 68 (108)
.++.|.+....+ ..+. +.|-..|||.++|++|-...-.... ..|. ++++-|-+ + |+ +|.|..
T Consensus 188 ~~ltl~v~~~~~~~~~i~-VkVLdCDTItQVKeKiLDavyk~~p~S~rp~-~~d~dLEwr~~~~~~~iL~D~D~ts~~~~ 265 (539)
T PF08337_consen 188 KTLTLNVVPQEEGSEEIP-VKVLDCDTITQVKEKILDAVYKNTPYSQRPR-ADDVDLEWRQGRGGRLILQDEDSTSKVEG 265 (539)
T ss_dssp -EEEEEEECTTTSSTCEE-EEEETTSBHHHHHHHHHHHHTTTS-GGGS---GGGEEEEEEETTSEEEEESSSSTTSEEET
T ss_pred EEEEEEEEecCCCCceEE-EEEEecCcccHHHHHHHHHHHcCCCCCCCCC-ccccceeeecCCCCcccccCCCCCcccCC
Confidence 456666554322 3344 8888999999999999864221111 1244 66666633 2 23 676653
Q ss_pred ------cccccCCCCCCCCCcceEEEEEecC
Q 033923 69 ------TIAESRLPVVELPGTAITMHVVLRP 93 (108)
Q Consensus 69 ------tL~~~~i~~~~~~~~~~tvhlv~~~ 93 (108)
||+.|+|++|. +|-|+.+.
T Consensus 266 ~wkrLNTL~HY~V~dga------~vaLv~k~ 290 (539)
T PF08337_consen 266 GWKRLNTLAHYKVPDGA------TVALVPKQ 290 (539)
T ss_dssp TEEE--BHHHHT--TTE------EEEEEES-
T ss_pred CceEeccHhhcCCCCCc------eEEEeecc
Confidence 56779999986 77777765
No 86
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=83.26 E-value=3.2 Score=32.31 Aligned_cols=59 Identities=22% Similarity=0.143 Sum_probs=41.2
Q ss_pred eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCC-CCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 18 DIGPSKFSPTTTVASLKEKIISRWPKEKENGPK-TVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 18 ~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~-~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
.++....+.+.||+++++++..+.-. +.|. .....|+--+|+-|.|+.+|++|+...+.
T Consensus 13 ~~~~~~~s~~~ti~d~~~~~~~~~~k---~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~ 72 (297)
T KOG1639|consen 13 RIKEKDLSGSETIDDLLKAISAKNLK---ITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGA 72 (297)
T ss_pred eeeeecCCCCCcHHHHHHHHHHhhhc---cCccchhheeeccCCCccccchhHHHHhccCCCC
Confidence 33336677889999999888876543 4421 12334445579999999999999987664
No 87
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=83.20 E-value=3.2 Score=26.18 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=31.4
Q ss_pred EEEEeCCCCeeeeeEeC-CcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccC
Q 033923 9 LKFRLADGADIGPSKFS-PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESR 74 (108)
Q Consensus 9 i~~r~~~g~~~~~l~v~-~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~ 74 (108)
|.+|..+.++...+.++ ...+|.+||+.|.++.... . ..+.-| .|-|.+|-++|.
T Consensus 1 V~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~lg---~---~~dfdL-----~i~na~t~eeY~ 56 (74)
T PF08783_consen 1 VHYKFKSQKDYDTITFDGTSISVFDLKREIIEKKKLG---K---GTDFDL-----VIYNAQTGEEYK 56 (74)
T ss_dssp EEEEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT---------TTTEEE-----EEEESSS--EE-
T ss_pred CeEEecccCCccEEEECCCeeEHHHHHHHHHHHhCCC---c---CCcCCE-----EEECCCCCCccC
Confidence 34566666665557776 5789999999998765421 2 344444 334555655664
No 88
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=81.77 E-value=6.5 Score=23.54 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=39.6
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
+.+....||++|.+.+..+++.-. . ....++..+|++..+ . -.+..+++++
T Consensus 16 ~~~~~~~tv~~ll~~l~~~~p~~~--~---~~~~~v~vN~~~v~~-~-~~~~~l~~gD 66 (77)
T PF02597_consen 16 IEVPEGSTVRDLLEALAERYPELA--L---RDRVAVAVNGEIVPD-D-GLDTPLKDGD 66 (77)
T ss_dssp EEESSTSBHHHHHHHHCHHTGGGH--T---TTTEEEEETTEEEGG-G-TTTSBEETTE
T ss_pred EecCCCCcHHHHHHHHHhhccccc--c---CccEEEEECCEEcCC-c-cCCcCcCCCC
Confidence 788899999999999999887321 2 488999999999987 2 4445566776
No 89
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=81.08 E-value=7.6 Score=23.51 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=32.8
Q ss_pred EEEEEeCCCCeeeeeEeC-CcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC
Q 033923 8 ELKFRLADGADIGPSKFS-PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG 61 (108)
Q Consensus 8 ~i~~r~~~g~~~~~l~v~-~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G 61 (108)
.||++.. |.... +.+. .+.|..+|+++|.+..+ .. ....+|-|..
T Consensus 2 ~vK~~~~-~~~~~-~~~~~~~~s~~~L~~~i~~~~~----~~---~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKYG-GEIRR-FVVVSRSISFEDLRSKIAEKFG----LD---AVSFKLKYPD 47 (81)
T ss_pred cEEEEec-CCCEE-EEEecCCCCHHHHHHHHHHHhC----CC---CCcEEEEeeC
Confidence 4556555 34455 8888 99999999999999998 44 3566776654
No 90
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=80.37 E-value=2.5 Score=34.04 Aligned_cols=65 Identities=23% Similarity=0.260 Sum_probs=51.0
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC---cccC--CCCcccccCCCCC
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG---KILE--DNMTIAESRLPVV 78 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G---k~L~--D~~tL~~~~i~~~ 78 (108)
-.|.||+.+|...- ..+-++++|..|=.-...+..+ .. -...+|+++- |.|. -+.|+.++||.+.
T Consensus 278 t~i~vR~pdG~R~q-rkf~~sepv~ll~~~~~s~~dg---~~---k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS 347 (356)
T KOG1364|consen 278 TSIQVRFPDGRRKQ-RKFLKSEPVQLLWSFCYSHMDG---SD---KKRFKLVQAIPASKTLDYGADATFKEAGLANS 347 (356)
T ss_pred eEEEEecCCccHHH-HhhccccHHHHHHHHHHHhhcc---cc---cccceeeecccchhhhhccccchHHHhccCcc
Confidence 45999999998765 7778899999887777765543 34 6889999998 6663 4689999999965
No 91
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=80.06 E-value=11 Score=23.10 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=38.7
Q ss_pred EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCccc
Q 033923 9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIA 71 (108)
Q Consensus 9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~ 71 (108)
+++-+.+|+... +.+.|..||.+.-+.+-+..+ +.|. .-.+++.-..+.|..+...+
T Consensus 3 ~~v~LP~~q~t~-V~vrpg~ti~d~L~~~~~kr~----L~~~-~~~V~~~~~~k~l~~~~d~~ 59 (71)
T PF02196_consen 3 CRVHLPNGQRTV-VQVRPGMTIRDALSKACKKRG----LNPE-CCDVRLVGEKKPLDWDQDSS 59 (71)
T ss_dssp EEEEETTTEEEE-EEE-TTSBHHHHHHHHHHTTT------CC-CEEEEEEEEEEEE-TTSBGG
T ss_pred EEEECCCCCEEE-EEEcCCCCHHHHHHHHHHHcC----CCHH-HEEEEEcCCCccccCCCcee
Confidence 567789999887 999999999999999999998 6633 33333333556665554443
No 92
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=79.88 E-value=12 Score=23.28 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=34.6
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCc-CCCC---CCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKE-NGPK---TVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~-i~p~---~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
++++ ..||++|.+.|.++++..+. +-.. -...+++.-+|+...++.. ..+++|+
T Consensus 20 v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgd 77 (88)
T TIGR01687 20 IEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGD 77 (88)
T ss_pred EEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCC
Confidence 7776 89999999999998873110 1000 0134777788887765432 4577787
No 93
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=79.71 E-value=0.58 Score=37.04 Aligned_cols=41 Identities=27% Similarity=0.324 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHh----------hCCCCCcCCCCCCCceE-----EEEcCcccCCCCcccccC
Q 033923 27 TTTVASLKEKIIS----------RWPKEKENGPKTVNNVQ-----LIHAGKILEDNMTIAESR 74 (108)
Q Consensus 27 ~~TV~~LK~~I~~----------~~~~~~~i~p~~~~~qR-----LIy~Gk~L~D~~tL~~~~ 74 (108)
+.||.++|+.+.+ +.+ +| .+.++ |.|+.|.+.|.++|++..
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~----vp---~dKik~~~~~lL~~kkPv~~~ktl~e~l 158 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETR----VP---LDKIKNFRCRLLYKKKPVGDSKTLAEVL 158 (309)
T ss_dssp ---------------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhccccccccccc----CC---HHHhhhhhhhheecCccCCCcCcHHHHH
Confidence 6999999999998 555 66 77777 999999999999998864
No 94
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=77.98 E-value=1 Score=35.65 Aligned_cols=49 Identities=37% Similarity=0.398 Sum_probs=41.3
Q ss_pred CCCCeeeeeEeC-CcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcc
Q 033923 14 ADGADIGPSKFS-PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTI 70 (108)
Q Consensus 14 ~~g~~~~~l~v~-~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL 70 (108)
.+|..+. +.+. .+..|..||+++..... ++ ++.|++.|-|..|.|+..+
T Consensus 290 ~dg~~~~-~~~~~~~~~~~~~k~k~~~~~~----i~---~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 290 ADGQVIK-ITVQSLSENVASLKEKIADESQ----IP---ANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCceee-eccccccccccccccccccccc----cc---hhheeeccCCcccCccccc
Confidence 4677776 6565 78899999999999888 88 9999999999999998444
No 95
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=76.86 E-value=13 Score=32.74 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=39.0
Q ss_pred eCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccC
Q 033923 13 LADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILE 65 (108)
Q Consensus 13 ~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~ 65 (108)
+.++..+. +-++++.|+..++++|+.+.| ++ .+.|-|+|.|...-
T Consensus 321 ~~~~~~~~-~~~~~~ntl~~~~~~I~~~Tg----ip---e~~qeLL~e~~~~h 365 (732)
T KOG4250|consen 321 MVQATSHE-YYVHADNTLHSLIERISKQTG----IP---EGKQELLFEGGLSH 365 (732)
T ss_pred eccceEEE-EecChhhhHHHHHHHHHHhhC----CC---CccceeeeecCccc
Confidence 45666776 999999999999999999999 88 89999999988543
No 96
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=76.09 E-value=8.1 Score=31.41 Aligned_cols=57 Identities=11% Similarity=-0.041 Sum_probs=46.9
Q ss_pred CCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCC--CcccccCCCCCC
Q 033923 15 DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDN--MTIAESRLPVVE 79 (108)
Q Consensus 15 ~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~--~tL~~~~i~~~~ 79 (108)
..++.. +.+...-....|+..++...+ +. .+..-|||+++.|.++ ..+.+|++..++
T Consensus 11 ~~~~~~-i~v~~dg~L~nl~aL~~~d~g----~~---~~~~~li~n~~~l~s~~s~~l~Q~g~~~~d 69 (380)
T KOG0012|consen 11 FEKKFP-IPVTTDGELNNLAALCWKDTG----IV---YDPSDLIYNPRPLVSNESQGLTQIGLKDGD 69 (380)
T ss_pred ceeeec-cccccccchhhHHHHHHHHhC----cc---cchhhcccCCCccccchhhhhhhcccccce
Confidence 444544 788888888899999999988 77 8888999999999765 669999999886
No 97
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=74.03 E-value=8.1 Score=24.71 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=32.0
Q ss_pred eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCc
Q 033923 18 DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK 62 (108)
Q Consensus 18 ~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk 62 (108)
|+. +.+.+..+..+|.++|+++.+ .+ ++..+|-|.-.
T Consensus 8 TVa-i~v~~g~~y~~L~~~ls~kL~----l~---~~~~~LSY~~~ 44 (78)
T cd06411 8 TVA-LRAPRGADVSSLRALLSQALP----QQ---AQRGQLSYRAP 44 (78)
T ss_pred EEE-EEccCCCCHHHHHHHHHHHhc----CC---hhhcEEEecCC
Confidence 555 889999999999999999998 67 78899999754
No 98
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=73.47 E-value=19 Score=22.74 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=36.2
Q ss_pred EEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCc
Q 033923 10 KFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK 62 (108)
Q Consensus 10 ~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk 62 (108)
++-+.+|.... +.+.|..||.++-.++-++.+ +. ++..-++..|+
T Consensus 3 rV~LPdg~~T~-V~vrpG~ti~d~L~kllekRg----l~---~~~~~vf~~g~ 47 (73)
T cd01817 3 RVILPDGSTTV-VPTRPGESIRDLLSGLCEKRG----IN---YAAVDLFLVGG 47 (73)
T ss_pred EEECCCCCeEE-EEecCCCCHHHHHHHHHHHcC----CC---hhHEEEEEecC
Confidence 35578998876 999999999999999999999 77 56666655564
No 99
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=72.43 E-value=19 Score=21.98 Aligned_cols=46 Identities=20% Similarity=0.176 Sum_probs=35.9
Q ss_pred EEEEEEeCCCC----eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE
Q 033923 7 IELKFRLADGA----DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI 58 (108)
Q Consensus 7 i~i~~r~~~g~----~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI 58 (108)
..|+|-..++. ... +.+++++|+.+|-+.+.++.+ + +.++.+..|.
T Consensus 3 ~~lrVy~~~~~~~~~~k~-i~v~~~tTa~evi~~~l~k~~----l-~~~~~~y~L~ 52 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKT-IKVSSSTTAREVIEMALEKFG----L-AEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSSSCCSEEE-EEEETTSBHHHHHHHHHHHTT----T-SSSGGGEEEE
T ss_pred eEEEEEcCCCCCCccEEE-EEECCCCCHHHHHHHHHHHhC----C-CCCCCCEEEE
Confidence 34566666666 555 999999999999999999998 5 3457888884
No 100
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=72.34 E-value=24 Score=22.94 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=44.3
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC--cccCCCCcccccCCCCCC
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG--KILEDNMTIAESRLPVVE 79 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G--k~L~D~~tL~~~~i~~~~ 79 (108)
+-|.-++-...-..-+-++..+|+.++-++++...-+. .++|..-..+|+-+.| +.+..+.++++.+|.+-+
T Consensus 4 fPl~~~F~gDFv~~Lv~VDt~dTmdqVA~k~A~HsVGr-RV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e 77 (85)
T PF06234_consen 4 FPLTANFEGDFVLQLVPVDTEDTMDQVAAKVAHHSVGR-RVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPME 77 (85)
T ss_dssp EEEEEEETT-SBEEEEEEETT-BHHHHHHHHHTTTTTT-SS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTE
T ss_pred cceeEeeccceEEEEEEeCCCCcHHHHHHHHhhhhcce-ecCCCCCCEEEEEecCCCccCCCccEehhcCCCcce
Confidence 33444444333223378899999999999999654221 1444324488999999 999999999999998765
No 101
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=71.51 E-value=8.4 Score=25.16 Aligned_cols=58 Identities=9% Similarity=0.130 Sum_probs=36.7
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEEEEec
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLR 92 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv~~ 92 (108)
..++-...++.||..++.+.+ +. -+.--+--....|+.+.+|-+-+++-.. .+.+.++
T Consensus 7 q~mDI~epl~~Lk~lLe~Rl~----~~---L~~~~f~LQD~~L~~~k~L~dQcVqgeG------lVQlnvQ 64 (88)
T PF11620_consen 7 QHMDIREPLSTLKKLLERRLG----IS---LSDYEFWLQDIQLEPHKSLVDQCVQGEG------LVQLNVQ 64 (88)
T ss_dssp EEEESSSBGGGHHHHSHHHH-----S-----SS-EEEETTEE--TTSBTTTSS----S------EEEEEEE
T ss_pred EEEecCCcHHHHHHHHHHhhC----CC---cCCCeEEeccceecCCccHHHhhccccC------EEEEEEE
Confidence 677888899999999999988 44 5555555567669999999988887544 5555554
No 102
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=71.28 E-value=11 Score=27.92 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=29.0
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEE--EEcCcc---cCCCCccccc
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQL--IHAGKI---LEDNMTIAES 73 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRL--Iy~Gk~---L~D~~tL~~~ 73 (108)
+-++.+.||++|.+.+..+.+ ++..+...+|| +++||+ +..+.+|++.
T Consensus 38 ~~vpk~~tV~Dll~~l~~k~~----~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 38 LLVPKTGTVSDLLEELQKKVG----FSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp E--BTT-BHHHHHHHHHTT--------TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred EEECCCCCHHHHHHHHHHHcC----CCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 788999999999999999887 44333567887 677875 5667777765
No 103
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=70.76 E-value=6.3 Score=27.96 Aligned_cols=39 Identities=15% Similarity=0.338 Sum_probs=29.5
Q ss_pred EcCc-ccCCCCcccccCCCCCCCCCcceEEEEEecCCCCCCCCCCC
Q 033923 59 HAGK-ILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNT 103 (108)
Q Consensus 59 y~Gk-~L~D~~tL~~~~i~~~~~~~~~~tvhlv~~~~~~~~~~~~~ 103 (108)
+.|+ ..+|+++|++++++-|| .+-+.+.++.-.+...++
T Consensus 108 ~~g~Kg~ddnktL~~~kf~iGD------~lDVaI~~p~~~~~~~~r 147 (151)
T KOG3391|consen 108 CLGRKGIDDNKTLQQTKFEIGD------YLDVAITPPNRRPPKSGR 147 (151)
T ss_pred ccCcccCCccchhhhCCccccc------eEEEEecCcccCCCcccc
Confidence 3355 44889999999999998 888999887665554443
No 104
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=70.25 E-value=17 Score=23.59 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=43.6
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCC----CCcCCCCCCCceEEEEcCcccCCCCccccc
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPK----EKENGPKTVNNVQLIHAGKILEDNMTIAES 73 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~----~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~ 73 (108)
.-|+|-+.||.... +.++..+|++++=+.+..+... +|.. .+..=-.+--|.++|.+.|.++
T Consensus 3 ~vvkv~~~Dg~sK~-l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~L----vE~~P~l~lER~~EDHE~vvdv 68 (85)
T cd01787 3 QVVKVYSEDGASKS-LEVDERMTARDVCQLLVDKNHCQDDSSWTL----VEHLPHLQLERLFEDHELVVEV 68 (85)
T ss_pred eEEEEEecCCCeeE-EEEcCCCcHHHHHHHHHHHhCCCCCCCeEE----EEecchhhhhhhccchHHHHHH
Confidence 45778789999887 9999999999999888876542 2211 0111113457788888887765
No 105
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=69.90 E-value=15 Score=26.43 Aligned_cols=55 Identities=20% Similarity=0.369 Sum_probs=38.5
Q ss_pred CceEEEEEEeCCCCeeeeeEeCC-cchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCccccc
Q 033923 4 EDLIELKFRLADGADIGPSKFSP-TTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAES 73 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~-~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~ 73 (108)
++.+.|++.. |. +- ++++. .+.+..+++.-.+..+ +. . + |+-|+.+....|++||
T Consensus 65 g~~veL~V~v--Gr-i~-lele~~~~~ie~I~~iCee~lp----f~---y-~---i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 65 GEEVELTVKV--GR-II-LELEDEEDVIEKIREICEEVLP----FG---Y-D---IKEGKFIRTKPTVTDY 120 (153)
T ss_pred CEEEEEEEEE--eE-EE-EEecCcHHHHHHHHHHHHHhCC----Cc---e-E---eeeeEEeccCCchhhh
Confidence 4556666654 54 33 77777 7777888877777666 32 2 2 3579999999999998
No 106
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=67.91 E-value=30 Score=22.39 Aligned_cols=53 Identities=13% Similarity=0.262 Sum_probs=36.2
Q ss_pred EEEEeC-CCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccc
Q 033923 9 LKFRLA-DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAE 72 (108)
Q Consensus 9 i~~r~~-~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~ 72 (108)
|+|+.. .|..+. +.++++.+-.+|.++|.+.++ +. ..+++=|.-- .|-.||++
T Consensus 3 ikVKv~~~~Dv~~-i~v~~~i~f~dL~~kIrdkf~----~~----~~~~iKykDE--GD~iti~s 56 (86)
T cd06408 3 IRVKVHAQDDTRY-IMIGPDTGFADFEDKIRDKFG----FK----RRLKIKMKDD--GDMITMGD 56 (86)
T ss_pred EEEEEEecCcEEE-EEcCCCCCHHHHHHHHHHHhC----CC----CceEEEEEcC--CCCccccC
Confidence 344443 444554 999999999999999999999 43 5666655544 44455543
No 107
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=67.90 E-value=16 Score=26.08 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=39.3
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCccccc
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAES 73 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~ 73 (108)
++.+.|++.. |. +- +++...+.+.++++.-.+..+ ++ .+ |.-|+.+.+..|++||
T Consensus 64 g~~veL~V~V--Gr-I~-le~~~~~~i~~I~eiC~e~~p----F~---y~----i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 64 GEDVELRVQV--GR-II-LELEDEDIVEEIEEICKEMLP----FG---YE----VRVGKFLRTKPTVTDY 118 (150)
T ss_pred CEEEEEEEEE--eE-EE-EEecCHHHHHHHHHHHHhhCC----Cc---eE----eeeeeEeecCCchhhh
Confidence 4566666654 64 33 677778888888887777766 33 22 3679999999999998
No 108
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=65.19 E-value=20 Score=23.41 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=32.9
Q ss_pred eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCC
Q 033923 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWP 42 (108)
Q Consensus 6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~ 42 (108)
+++|.|-+.+|..+. +++..+++..++=+.+..+.+
T Consensus 1 ~V~L~V~Lpdg~~i~-V~v~~s~~a~~Vleav~~kl~ 36 (87)
T cd01777 1 DVELRIALPDKATVT-VRVRKNATTDQVYQALVAKAG 36 (87)
T ss_pred CeEEEEEccCCCEEE-EEEEEcccHHHHHHHHHHHhC
Confidence 367888899999998 999999999999999999888
No 109
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=65.17 E-value=7.4 Score=24.72 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=17.5
Q ss_pred eEeCCcchHHHHHHHHHhhCC
Q 033923 22 SKFSPTTTVASLKEKIISRWP 42 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~ 42 (108)
++++.+.|+.++|+.+|++-.
T Consensus 4 l~~~~~~Tl~~iK~~lw~~A~ 24 (78)
T PF02192_consen 4 LRVSRDATLSEIKEELWEEAK 24 (78)
T ss_dssp EEEETT-BHHHHHHHHHHHGG
T ss_pred EEccCcCcHHHHHHHHHHHHH
Confidence 889999999999999997643
No 110
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.40 E-value=6.7 Score=33.04 Aligned_cols=50 Identities=32% Similarity=0.280 Sum_probs=42.9
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCC
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVV 78 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~ 78 (108)
++.+..-|-.+|...|+.+.+ ++ -+.++.|-+||+|.-.+||.+-|+...
T Consensus 54 ~k~sL~i~Gselqa~iakklg----i~---enhvKci~~~Kils~~ktlaeQglk~n 103 (568)
T KOG2561|consen 54 KKCSLHITGSELQALIAKKLG----IK---ENHVKCIINGKILSCRKTLAEQGLKIN 103 (568)
T ss_pred hhcccccccHHHHHHHHHHcC----Cc---hhhhheeeccceeecccchhhhhhhhh
Confidence 555666778889999999999 77 679999999999999999999887744
No 111
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=63.44 E-value=38 Score=22.46 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=29.3
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCC
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWP 42 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~ 42 (108)
....|.+..+.... ++++.++|+.++-+.+-.+..
T Consensus 7 ~~~sf~lp~~s~k~-v~IsS~tTt~eVI~~LL~KF~ 41 (96)
T cd01778 7 TSTSLPLPKDTAKH-LHISSKTTVREVIEALLKKFL 41 (96)
T ss_pred EEEEEeccCCceeE-EEEecCCcHHHHHHHHHHhhe
Confidence 45566777887776 999999999999999998887
No 112
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=62.79 E-value=32 Score=20.79 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=30.7
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
++++...||.+|-+.+ + ++ +....+..+|+++.. +.-+++||
T Consensus 18 ~~~~~~~tv~~ll~~l----~----~~---~~~v~v~vNg~iv~~-----~~~l~~gD 59 (70)
T PRK08364 18 IEWRKGMKVADILRAV----G----FN---TESAIAKVNGKVALE-----DDPVKDGD 59 (70)
T ss_pred EEcCCCCcHHHHHHHc----C----CC---CccEEEEECCEECCC-----CcCcCCCC
Confidence 7888889999988765 3 44 566888889998854 44466666
No 113
>PRK06437 hypothetical protein; Provisional
Probab=61.76 E-value=33 Score=20.66 Aligned_cols=48 Identities=8% Similarity=0.066 Sum_probs=34.6
Q ss_pred CCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 15 DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 15 ~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
.+++.. ++++...||.+|-+++ + ++ +...-++.+|+++. .++-+.+||
T Consensus 9 g~~~~~-~~i~~~~tv~dLL~~L----g----i~---~~~vaV~vNg~iv~-----~~~~L~dgD 56 (67)
T PRK06437 9 GHINKT-IEIDHELTVNDIIKDL----G----LD---EEEYVVIVNGSPVL-----EDHNVKKED 56 (67)
T ss_pred CCcceE-EEcCCCCcHHHHHHHc----C----CC---CccEEEEECCEECC-----CceEcCCCC
Confidence 445454 8888889999877654 4 55 67888889999997 444566666
No 114
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.82 E-value=17 Score=28.65 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=45.9
Q ss_pred eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCccc-CC--CCcccccCCCCC
Q 033923 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKIL-ED--NMTIAESRLPVV 78 (108)
Q Consensus 6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L-~D--~~tL~~~~i~~~ 78 (108)
.-.|.||+.||+++. ..|.+..+...|+.-|.-..+.+ +. |-.+.==|--+.+ +| ..+|...++-+.
T Consensus 210 ~crlQiRl~DG~Tl~-~tF~a~E~L~~VR~wVd~n~~~~----~~-P~~f~t~fPR~tf~edD~~KpLq~L~L~Ps 279 (290)
T KOG2689|consen 210 QCRLQIRLPDGQTLT-QTFNARETLAAVRLWVDLNRGDG----LD-PYSFHTGFPRVTFTEDDELKPLQELDLVPS 279 (290)
T ss_pred ceEEEEEcCCCCeee-eecCchhhHHHHHHHHHHhccCC----CC-CeeeecCCCceecccccccccHHHhccccc
Confidence 457899999999999 99999999999999999887732 11 2222222223334 23 266777777644
No 115
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=60.39 E-value=46 Score=22.77 Aligned_cols=52 Identities=13% Similarity=0.136 Sum_probs=40.1
Q ss_pred ceEEEEEEeCCCC----eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCccc
Q 033923 5 DLIELKFRLADGA----DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKIL 64 (108)
Q Consensus 5 ~~i~i~~r~~~g~----~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L 64 (108)
..+.|++|-..+. ... +.+++++|++.+-..|..... ++ ++++-++|--.-.
T Consensus 29 ~kV~i~l~aiG~~PilK~~k-~~i~~t~tfa~vi~Flkk~Lk----l~---as~slflYVN~sF 84 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSK-FKINPTQTFAKVILFLKKFLK----LQ---ASDSLFLYVNNSF 84 (116)
T ss_pred ceEEEEEeccCCCcceecce-EEeCcchhhHHHHHHHHHHhC----Cc---ccCeEEEEEcCcc
Confidence 3567777776553 223 889999999999999999888 67 7888888877655
No 116
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=60.12 E-value=24 Score=21.12 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=27.5
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccc
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAE 72 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~ 72 (108)
+++....|..+||+++.. +.--+||+|-...++..|.+
T Consensus 10 ~~~~~~~tl~~lr~~~k~-------------~~DI~I~NGF~~~~d~~L~e 47 (57)
T PF14453_consen 10 IETEENTTLFELRKESKP-------------DADIVILNGFPTKEDIELKE 47 (57)
T ss_pred EEcCCCcCHHHHHHhhCC-------------CCCEEEEcCcccCCccccCC
Confidence 778888999999986322 22267999998877665543
No 117
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=59.43 E-value=21 Score=23.83 Aligned_cols=37 Identities=22% Similarity=0.130 Sum_probs=24.6
Q ss_pred EEEEcCcccCCCCcccccCCCCCCCCCcceEEEEEecCCCCC
Q 033923 56 QLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPD 97 (108)
Q Consensus 56 RLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv~~~~~~~ 97 (108)
.|-|+||.|.++.+|++|-=.+.. +.|-+-+.+++..
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEK-----tKiivKl~~~g~g 39 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEK-----TKIIVKLQKRGQG 39 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcc-----eeEEEEeccCCCC
Confidence 477999999999999999222332 3454555554443
No 118
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=59.18 E-value=46 Score=21.51 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=31.1
Q ss_pred EEEEeCCCCeeeeeEeCC-----cchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC
Q 033923 9 LKFRLADGADIGPSKFSP-----TTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG 61 (108)
Q Consensus 9 i~~r~~~g~~~~~l~v~~-----~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G 61 (108)
||+.. .|.... |.++. +.+...|+++|.+... +++ .....|-|.-
T Consensus 3 vKv~y-~~~~rR-f~l~~~~~~~d~~~~~L~~kI~~~f~----l~~--~~~~~l~Y~D 52 (91)
T cd06398 3 VKVKY-GGTLRR-FTFPVAENQLDLNMDGLREKVEELFS----LSP--DADLSLTYTD 52 (91)
T ss_pred EEEEe-CCEEEE-EEeccccccCCCCHHHHHHHHHHHhC----CCC--CCcEEEEEEC
Confidence 44443 333445 77774 7999999999999998 541 2677777753
No 119
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=58.90 E-value=40 Score=20.69 Aligned_cols=48 Identities=13% Similarity=0.199 Sum_probs=33.0
Q ss_pred CCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--E----cCcccCCCCc
Q 033923 16 GADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--H----AGKILEDNMT 69 (108)
Q Consensus 16 g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y----~Gk~L~D~~t 69 (108)
+.... +.++.++|..++-+.+.++.+. .- ++.+..|+ + ..|.|.|++.
T Consensus 12 ~~~kt-i~V~~~~t~~~Vi~~~l~k~~l----~~-~~~~y~L~ev~~~~~~er~L~~~e~ 65 (87)
T cd01768 12 GTYKT-LRVSKDTTAQDVIQQLLKKFGL----DD-DPEDYALVEVLGDGGLERLLLPDEC 65 (87)
T ss_pred ccEEE-EEECCCCCHHHHHHHHHHHhCC----cC-CcccEEEEEEECCceEEEEeCCCCC
Confidence 44444 9999999999999999999883 21 25666664 2 3346655543
No 120
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=57.70 E-value=44 Score=21.88 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=26.8
Q ss_pred EEeCCCCeeeeeEeCCcchHHHHHHHHHhhCC
Q 033923 11 FRLADGADIGPSKFSPTTTVASLKEKIISRWP 42 (108)
Q Consensus 11 ~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~ 42 (108)
++-..|.+.- +.++.+.|-.+|+.++.+..+
T Consensus 17 l~Y~GG~tr~-i~V~r~~s~~el~~kl~~~~~ 47 (97)
T cd06410 17 LRYVGGETRI-VSVDRSISFKELVSKLSELFG 47 (97)
T ss_pred EEEcCCceEE-EEEcCCCCHHHHHHHHHHHhC
Confidence 4556777765 999999999999999999988
No 121
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=57.48 E-value=13 Score=23.66 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=18.4
Q ss_pred eEeCCcchHHHHHHHHHhhCC
Q 033923 22 SKFSPTTTVASLKEKIISRWP 42 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~ 42 (108)
+.++.+.|+.++|+.++++-.
T Consensus 4 l~v~~~aTl~~IK~~lw~~A~ 24 (78)
T smart00143 4 LRVLREATLSTIKHELFKQAR 24 (78)
T ss_pred EEccccccHHHHHHHHHHHHH
Confidence 788999999999999997643
No 122
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=55.80 E-value=44 Score=28.07 Aligned_cols=66 Identities=23% Similarity=0.336 Sum_probs=47.1
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceE--EEEcCcccCC---CCcccccCCCCC
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQ--LIHAGKILED---NMTIAESRLPVV 78 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qR--LIy~Gk~L~D---~~tL~~~~i~~~ 78 (108)
....|.||+.+|..+. =+|+.++-...+++-+...-. +. ....- --|--|...| +++|.+..+-+.
T Consensus 313 d~~rLqiRLPdGssft-e~Fps~~vL~~vr~yvrq~~~----i~---~g~f~LatpyPRReft~eDy~KtllEl~L~ps 383 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFT-EKFPSTSVLRMVRDYVRQNQT----IG---LGAFDLATPYPRREFTDEDYDKTLLELRLFPS 383 (506)
T ss_pred ceeEEEEecCCccchh-hcCCcchHHHHHHHHHHhccc----cc---ccceeeccccccccccchhhhhhHHHhccCCc
Confidence 5679999999999887 788877777778888776544 33 33333 3577777643 377888888755
No 123
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=54.23 E-value=47 Score=21.24 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=23.3
Q ss_pred CCCeeeeeEeCC--cchHHHHHHHHHhhCC
Q 033923 15 DGADIGPSKFSP--TTTVASLKEKIISRWP 42 (108)
Q Consensus 15 ~g~~~~~l~v~~--~~TV~~LK~~I~~~~~ 42 (108)
.|.++. |.+++ +++-.+|++.|...++
T Consensus 8 ~~d~~r-f~~~~~~~~~~~~L~~ev~~rf~ 36 (81)
T cd06396 8 NGESQS-FLVSDSENTTWASVEAMVKVSFG 36 (81)
T ss_pred CCeEEE-EEecCCCCCCHHHHHHHHHHHhC
Confidence 455666 99999 7899999999999998
No 124
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=53.74 E-value=1.2e+02 Score=24.99 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=53.3
Q ss_pred EEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE-EcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI-HAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 8 ~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI-y~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
.+.|...+ +.+. +-++.+..|.+|--.|-+..+.+-..+.. +..-+|. -.|..|+-+.+|.+.++.+|+ .
T Consensus 4 RVtV~~~~-~~~D-laLPa~~PvaellP~ll~~~~~~~~~~~~-~~~w~L~r~gG~pL~~~~sL~~~gV~DG~------~ 74 (452)
T TIGR02958 4 RVTVLAGR-RAVD-VALPADVPVAELIPDLVDLLDDRGAAELG-AVRWALARAGGSPLDPDASLAEAGVRDGE------L 74 (452)
T ss_pred EEEEeeCC-eeee-eecCCCCcHHHHHHHHHHHhCcccccCCC-CcceEEecCCCCCCCCCCCHHHcCCCCCC------e
Confidence 44554333 3455 88889999999888888776642100101 2333332 267799999999999999998 8
Q ss_pred EEEEecCCCC
Q 033923 87 MHVVLRPSLP 96 (108)
Q Consensus 87 vhlv~~~~~~ 96 (108)
++|..+....
T Consensus 75 L~L~p~~~~~ 84 (452)
T TIGR02958 75 LVLVPASATE 84 (452)
T ss_pred EEEeeCCCCC
Confidence 8888755443
No 125
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=53.29 E-value=61 Score=21.08 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=32.9
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEE--c--Cc-ccCC-CCcccccCCCCC
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH--A--GK-ILED-NMTIAESRLPVV 78 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy--~--Gk-~L~D-~~tL~~~~i~~~ 78 (108)
-.|+..+||+.+...+.+... ++ .+.||=- + +. .|.+ ..||.+++|..|
T Consensus 18 ~~FSk~DTI~~v~~~~rklf~----i~----~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~g 72 (88)
T PF14836_consen 18 KQFSKTDTIGFVEKEMRKLFN----IQ----EETRLWNKYSENSYELLNNPEITVEDAGLYDG 72 (88)
T ss_dssp EEE-TTSBHHHHHHHHHHHCT-----T----S-EEEEEECTTTCEEEE--TTSBTTTTT--TT
T ss_pred hhccccChHHHHHHHHHHHhC----CC----ccceehhccCCcchhhhCCCCccHHHccCcCC
Confidence 789999999999999999988 53 5577732 2 22 3544 468999999987
No 126
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=52.95 E-value=14 Score=20.16 Aligned_cols=13 Identities=8% Similarity=0.360 Sum_probs=11.8
Q ss_pred CCceEEEEcCccc
Q 033923 52 VNNVQLIHAGKIL 64 (108)
Q Consensus 52 ~~~qRLIy~Gk~L 64 (108)
..++-++|+|+++
T Consensus 5 ~~qLTIfY~G~V~ 17 (36)
T PF06200_consen 5 TAQLTIFYGGQVC 17 (36)
T ss_pred CCcEEEEECCEEE
Confidence 7899999999976
No 127
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=51.96 E-value=66 Score=21.15 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=46.4
Q ss_pred eEEEEEEeCC-CCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCC-ceEEEEcCc--ccCCCCcccccC-----CC
Q 033923 6 LIELKFRLAD-GADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVN-NVQLIHAGK--ILEDNMTIAESR-----LP 76 (108)
Q Consensus 6 ~i~i~~r~~~-g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~-~qRLIy~Gk--~L~D~~tL~~~~-----i~ 76 (108)
.+-|.+...+ ...++ +.+++++|+.+|.+.+..+.- ...-+...++ +--|==.|+ .|..+..|.+|. +.
T Consensus 17 ~i~v~i~~~~~~~~~t-~~v~~~~~p~~li~~~l~k~~-~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~ 94 (108)
T smart00144 17 KILIVVHLEKDQQTKT-LKVNPNCTPDSVLAQAFTKML-SLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLK 94 (108)
T ss_pred eEEEEEEEccCceeEE-EEECCCCCHHHHHHHHHHHHH-hccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHh
Confidence 3444444433 23455 999999999999888877621 0001111133 566655666 666778888863 44
Q ss_pred CCCCCCcceEEEEEecC
Q 033923 77 VVELPGTAITMHVVLRP 93 (108)
Q Consensus 77 ~~~~~~~~~tvhlv~~~ 93 (108)
.+. .+||++..
T Consensus 95 ~~~------~~~L~L~~ 105 (108)
T smart00144 95 NGR------EPHLVLMT 105 (108)
T ss_pred cCC------CceEEEEe
Confidence 454 45665543
No 128
>COG4055 McrD Methyl coenzyme M reductase, subunit D [Coenzyme metabolism]
Probab=50.78 E-value=61 Score=23.34 Aligned_cols=55 Identities=22% Similarity=0.291 Sum_probs=37.3
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcc-hHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCccccc
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTT-TVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAES 73 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~-TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~ 73 (108)
++.+.+++.. |.. - +++.+.+ ++..+++...+..|. . .+ ++-|+++.+..|+.||
T Consensus 73 g~~~eL~Vkv--Gri-~-~eie~e~~~~e~ie~ic~e~lPf----~---y~----v~vG~F~r~kpTVTDy 128 (165)
T COG4055 73 GEEIELKVKV--GRI-I-LEIEDEDETMEKIEEICDEMLPF----G---YE----VRVGKFTRRKPTVTDY 128 (165)
T ss_pred CEEEEEEEEe--eEE-E-EEecCcHhHHHHHHHHHHHhCCC----c---ee----eeeeeeeccCCcchhh
Confidence 4455666644 653 3 7777765 777787766666662 1 22 3789999999999998
No 129
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=49.72 E-value=47 Score=22.13 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=38.9
Q ss_pred EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC--------cccCCCCcccccCC
Q 033923 9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG--------KILEDNMTIAESRL 75 (108)
Q Consensus 9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G--------k~L~D~~tL~~~~i 75 (108)
++|..-+|.+.. ++|..-.+-.++|+++-.+.| .+....+..-.+..| +.|-|.+.+.=|.-
T Consensus 3 i~~I~~dG~tk~-VNV~~c~~a~eI~~rvLKKfg----~~~~~~~~~~~v~d~~~~~~~~~~~LsD~EL~~IC~s 72 (105)
T PF14847_consen 3 IRFILEDGSTKT-VNVSGCFNAQEIKRRVLKKFG----LPEHPRNYCFYVLDGESPDPSNCRPLSDVELVTICHS 72 (105)
T ss_dssp EEEEETTTEEEE-EE--S--HHHHHHHHHHHHHT----SS--CCCEEEEEE-S-----SSEEEE-SSHHHHHHHT
T ss_pred EEEECCCCcEEE-EEECCCCCHHHHHHHHHHHcC----CccccccceEEEecccccccccceECcHHHHHHHHcC
Confidence 678888998887 999999999999999999988 331113555556666 45555555555543
No 130
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=49.07 E-value=46 Score=19.54 Aligned_cols=46 Identities=20% Similarity=0.194 Sum_probs=32.1
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
++++...||.+|.+++ + ++ ...+.+..+|+++..+. -.+.-+.+||
T Consensus 9 ~~~~~~~tv~~ll~~l----~----~~---~~~i~V~vNg~~v~~~~-~~~~~L~~gD 54 (65)
T cd00565 9 REVEEGATLAELLEEL----G----LD---PRGVAVALNGEIVPRSE-WASTPLQDGD 54 (65)
T ss_pred EEcCCCCCHHHHHHHc----C----CC---CCcEEEEECCEEcCHHH-cCceecCCCC
Confidence 6788889999988765 3 34 67788889999885432 2223467776
No 131
>COG1551 CsrA RNA-binding global regulator CsrA [Signal transduction mechanisms]
Probab=44.84 E-value=79 Score=19.94 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=27.7
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhh
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISR 40 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~ 40 (108)
++.+.|++.-..|..+. +-++.-..|.=+++.|+++
T Consensus 15 gddI~itVl~i~gnqVk-iGi~APk~v~I~R~Eiy~~ 50 (73)
T COG1551 15 GDDIEITVLSIKGNQVK-IGINAPKEVSIHREEIYQR 50 (73)
T ss_pred cCCeEEEEEEEcCCeEE-EeecCChhhhHHHHHHHHH
Confidence 46789999999999888 7777777777666666654
No 132
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=43.25 E-value=41 Score=23.15 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=32.9
Q ss_pred EeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCccccc
Q 033923 23 KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAES 73 (108)
Q Consensus 23 ~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~ 73 (108)
-|+.+.||+++...|..+.. +. ++.+=|..++-++.-+.++++.
T Consensus 46 lVP~d~tV~qF~~iIRkrl~----l~---~~k~flfVnn~lp~~s~~mg~l 89 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQALG----TS---AKKVTLAIEGSTPAVTATVGDI 89 (121)
T ss_pred EcCCCCcHHHHHHHHHHHcC----CC---hhHEEEEECCccCCccchHHHH
Confidence 69999999999999999887 66 5565444445455667788774
No 133
>PF14941 OAF: Transcriptional regulator, Out at first
Probab=43.03 E-value=79 Score=24.26 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=41.9
Q ss_pred CCCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccC
Q 033923 2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILE 65 (108)
Q Consensus 2 ~~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~ 65 (108)
-+++.|+|-|+..||.-++ +-+|-..-|.-+|..|-.+.-. .+ ...|-|-|.-|+-.
T Consensus 23 ~~~d~itlef~~~DGtlit-~~~Df~~~v~i~kalilge~e~---gq---s~yq~~cf~~~~~~ 79 (240)
T PF14941_consen 23 SEEDTITLEFQRSDGTLIT-QLADFKQEVQIFKALILGEEER---GQ---SQYQALCFVTKLQK 79 (240)
T ss_pred CCCceEEEEEEcCCCcEEe-eehhhhhHHHHHHHHHcChhhh---cc---CcceeEEEEEeecc
Confidence 4688999999999999888 8888888899999988754321 23 45666666655433
No 134
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=42.90 E-value=1.2e+02 Score=25.62 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=48.6
Q ss_pred EEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCC------CCCCceEEEEcCcccCCCCcccccCCCCCCCC
Q 033923 8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGP------KTVNNVQLIHAGKILEDNMTIAESRLPVVELP 81 (108)
Q Consensus 8 ~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p------~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~ 81 (108)
-++||...|.. + +++.++++.+.|-++|....... ..| ..++.|-.||+ +..++|+.+.|+..|+
T Consensus 2 i~rfRsk~G~~-R-ve~qe~d~lg~l~~kll~~~~~n--~~~e~~svc~~p~~qG~~~s---~l~dqt~~dlGL~hGq-- 72 (571)
T COG5100 2 IFRFRSKEGQR-R-VEVQESDVLGMLSPKLLAFFEVN--YSPEQISVCSAPDGQGEIFS---LLKDQTPDDLGLRHGQ-- 72 (571)
T ss_pred eEEEecCCCce-e-eeccccchhhhhhHHHHhhhccC--CCccceEEEeCCCCCceeee---cccccChhhhccccCc--
Confidence 36888888864 4 89999999999999988765432 120 11333433433 3456999999999997
Q ss_pred CcceEEEEEe
Q 033923 82 GTAITMHVVL 91 (108)
Q Consensus 82 ~~~~tvhlv~ 91 (108)
.+.|-.
T Consensus 73 ----mLyl~y 78 (571)
T COG5100 73 ----MLYLEY 78 (571)
T ss_pred ----EEEEEe
Confidence 665555
No 135
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=42.37 E-value=92 Score=20.05 Aligned_cols=68 Identities=13% Similarity=0.209 Sum_probs=41.4
Q ss_pred CceEEEEEEeC-CCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCC-ceEEEEcCc--ccCCCCcccccC
Q 033923 4 EDLIELKFRLA-DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVN-NVQLIHAGK--ILEDNMTIAESR 74 (108)
Q Consensus 4 ~~~i~i~~r~~-~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~-~qRLIy~Gk--~L~D~~tL~~~~ 74 (108)
...+.|.|... +...+. |.++.+.|+.+|-+++..+.... ..+.+.. +--|==.|+ .|..+.+|.+|.
T Consensus 14 ~~~i~v~v~~~~~~~~~t-~~~~~~~t~~~li~~~l~k~~~~--~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~ 85 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFT-FQVDPNSTPEELIAQALKKKLKD--LLPPDPEDDYVLKVCGREEYLLGDHPLSQYE 85 (106)
T ss_dssp SSEEEEEEEETTCSEEEE-EEEETTS-HHHHHHHHHHHHHHH--TT-CHHHHGEEEEETTSSEEE-SSS-GGGBH
T ss_pred CCeEEEEEEEcCCCcEEE-EEECCCCCHHHHHHHHHHHHHhh--cCCcccccCEEEEecCceEEeeCCeeeeccH
Confidence 34677777777 444555 99999999999988888762100 1111122 566655565 666788888873
No 136
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=39.55 E-value=1e+02 Score=19.61 Aligned_cols=63 Identities=5% Similarity=0.098 Sum_probs=40.9
Q ss_pred CCCCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 1 MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 1 ~~~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
|+|.....+++ ..+|+. .+++...||.+|-+.+ + ++ +...-+-.+|.++. ...-+++-+++||
T Consensus 11 ~~~~~~~~m~I-~VNG~~---~~~~~~~tl~~LL~~l----~----~~---~~~vAVevNg~iVp-r~~w~~t~L~egD 73 (84)
T PRK06083 11 TEGAAMVLITI-SINDQS---IQVDISSSLAQIIAQL----S----LP---ELGCVFAINNQVVP-RSEWQSTVLSSGD 73 (84)
T ss_pred ccCCCCceEEE-EECCeE---EEcCCCCcHHHHHHHc----C----CC---CceEEEEECCEEeC-HHHcCcccCCCCC
Confidence 34555666665 346764 6678888988876643 3 44 56666678898884 3344556678887
No 137
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=38.23 E-value=96 Score=19.07 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=31.5
Q ss_pred CCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--E-cC--cccCCC
Q 033923 16 GADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--H-AG--KILEDN 67 (108)
Q Consensus 16 g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y-~G--k~L~D~ 67 (108)
+.... +.+.+++|+.++-+.+.++.+ +... +....|+ + .| |.|.|+
T Consensus 15 ~~~kt-i~v~~~tTa~~Vi~~~l~k~~----l~~~-~~~y~L~e~~~~~~er~L~~~ 65 (90)
T smart00314 15 GTYKT-LRVSSRTTARDVIQQLLEKFH----LTDD-PEEYVLVEVLPDGKERVLPDD 65 (90)
T ss_pred CcEEE-EEECCCCCHHHHHHHHHHHhC----CCCC-cccEEEEEEeCCcEEEEeCCC
Confidence 55555 999999999999999999888 4322 4455553 2 44 566543
No 138
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=34.09 E-value=1.1e+02 Score=18.67 Aligned_cols=51 Identities=8% Similarity=0.048 Sum_probs=29.0
Q ss_pred eEeCC-cchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 22 SKFSP-TTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 22 l~v~~-~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
+++++ ..||++|++.|.++.+. |... ......+.--+++.-.+ +.-+++||
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~-~~~~-~~~~~~~~aVN~~~~~~-----~~~l~dgD 70 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDR-WALA-LEDGKLLAAVNQTLVSF-----DHPLTDGD 70 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCcc-HHhh-hcCCCEEEEECCEEcCC-----CCCCCCCC
Confidence 45543 47999999999988752 1100 01344555556654333 23467776
No 139
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=34.02 E-value=77 Score=24.94 Aligned_cols=53 Identities=23% Similarity=0.312 Sum_probs=37.5
Q ss_pred eEeCCcchHHHHHHHHHhhC---CCCCc--C---CCCCCCceEEEEcCcccCCCCcccccC
Q 033923 22 SKFSPTTTVASLKEKIISRW---PKEKE--N---GPKTVNNVQLIHAGKILEDNMTIAESR 74 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~---~~~~~--i---~p~~~~~qRLIy~Gk~L~D~~tL~~~~ 74 (108)
|....-.-|..+++.|.++. +.... . .+...+.+-|.|+|+.|..+.||+..+
T Consensus 252 L~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr 312 (331)
T PF11816_consen 252 LNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVR 312 (331)
T ss_pred ecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHH
Confidence 55566667888888888877 11000 0 112268899999999999999999864
No 140
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform
Probab=33.89 E-value=1.2e+02 Score=20.14 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=43.0
Q ss_pred CCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCC-cccccCCCCCCCCCcceEEEEEecCCCCC
Q 033923 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNM-TIAESRLPVVELPGTAITMHVVLRPSLPD 97 (108)
Q Consensus 25 ~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~-tL~~~~i~~~~~~~~~~tvhlv~~~~~~~ 97 (108)
.+-.|..++-+++.+..+-.. +. .=..-.|++|+.+.+.. .|-.+++..+ ++.+.+|.+...
T Consensus 28 ~~~~t~~~~l~~l~~~l~lh~-Ve---vIg~E~I~A~~ll~~~~~~L~H~~~~~~-------~l~l~vrs~~~~ 90 (104)
T PF14807_consen 28 SSQRTLPEFLQRLQQKLRLHV-VE---VIGNEGIFACQLLNSSPVCLLHCRVNAG-------TLDLWVRSSDSP 90 (104)
T ss_pred cCcCCHHHHHHHHHHhcCceE-EE---EeCccceeeeeccCCCCeEEEEEEecCC-------eEEEEEEcCCCC
Confidence 355677777777777666332 22 23347899999998877 8888988744 688888876553
No 141
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=33.62 E-value=1.4e+02 Score=19.75 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=32.3
Q ss_pred EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC
Q 033923 9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG 61 (108)
Q Consensus 9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G 61 (108)
|+|=-.|+.-.+ +.+..+.||.+|-..+..+.- .++. .+.+=+++.|
T Consensus 5 IRIFr~D~Tf~T-ls~~l~tTv~eli~~L~rK~~----l~~~-~ny~l~l~~~ 51 (97)
T cd01775 5 IRVFRSDGTFTT-LSCPLNTTVSELIPQLAKKFY----LPSG-GNYQLSLKKH 51 (97)
T ss_pred EEEEecCCcEEE-EEcCCcCcHHHHHHHHHHhhc----CCCC-CCeEEEEEEC
Confidence 444345665555 999999999999999998876 4433 3444445555
No 142
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=32.82 E-value=85 Score=18.30 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=25.0
Q ss_pred EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCC
Q 033923 9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWP 42 (108)
Q Consensus 9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~ 42 (108)
|++.+.+|.. .+++...|+.++=..|....+
T Consensus 1 I~v~lpdG~~---~~~~~g~T~~d~A~~I~~~l~ 31 (60)
T PF02824_consen 1 IRVYLPDGSI---KELPEGSTVLDVAYSIHSSLA 31 (60)
T ss_dssp EEEEETTSCE---EEEETTBBHHHHHHHHSHHHH
T ss_pred CEEECCCCCe---eeCCCCCCHHHHHHHHCHHHH
Confidence 4667799985 568888999999999987765
No 143
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=32.49 E-value=96 Score=19.69 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=24.7
Q ss_pred CcchHHHHHHHHHh-hCCCCCcCCCCCCCceEEEEcCcc----cCCCCcccccCCCCCC
Q 033923 26 PTTTVASLKEKIIS-RWPKEKENGPKTVNNVQLIHAGKI----LEDNMTIAESRLPVVE 79 (108)
Q Consensus 26 ~~~TV~~LK~~I~~-~~~~~~~i~p~~~~~qRLIy~Gk~----L~D~~tL~~~~i~~~~ 79 (108)
..+|+++|-++|-. +.+. ..|.=.-.-++||..-. -..+++|+++||.+|+
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg~---~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs 62 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLGM---NEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGS 62 (87)
T ss_dssp TT-BHHHHHHHCCCCCS-----SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-
T ss_pred hhCcHHHHHHHHHHhccCC---CCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCC
Confidence 36889998888765 4442 12110114455555442 1124789999999885
No 144
>PF14044 NETI: NETI protein
Probab=32.04 E-value=77 Score=19.08 Aligned_cols=19 Identities=5% Similarity=0.104 Sum_probs=16.3
Q ss_pred eEeCCcchHHHHHHHHHhh
Q 033923 22 SKFSPTTTVASLKEKIISR 40 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~ 40 (108)
|+|..+.||++.-+++...
T Consensus 2 FeV~enETI~~CL~RM~~e 20 (57)
T PF14044_consen 2 FEVEENETISDCLARMKKE 20 (57)
T ss_pred eeccCCCcHHHHHHHHHHc
Confidence 6788999999998998864
No 145
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=31.30 E-value=31 Score=25.39 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=26.6
Q ss_pred CCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEE--EEcC-----cccCCCC--ccccc
Q 033923 16 GADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQL--IHAG-----KILEDNM--TIAES 73 (108)
Q Consensus 16 g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRL--Iy~G-----k~L~D~~--tL~~~ 73 (108)
|..+. +.+.+.+|.+++|+||+.+.| ++-..-+..|+ +..+ +.|+|+. .|.+-
T Consensus 132 GiPF~-f~v~~gE~f~~tK~Rl~~rlg----v~~keF~K~Kfaiv~~~~~~~~~yl~d~~~~il~~~ 193 (213)
T PF14533_consen 132 GIPFL-FVVKPGETFSDTKERLQKRLG----VSDKEFEKWKFAIVQNSRYSKPRYLEDDDDLILFDE 193 (213)
T ss_dssp EEEEE-EEEETT--HHHHHHHHHHHH-------HHHHTT-EEEEEETTEE---EE--TT-T----GG
T ss_pred CCCEE-EEeeCCCcHHHHHHHHHHHhC----CChhhheeEEEEEEecCCcccceeccccchhhhhhh
Confidence 44444 778899999999999999987 44222344444 3444 4566654 44444
No 146
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=30.18 E-value=42 Score=21.06 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=16.9
Q ss_pred eCCcchHHHHHHHHHhhCC
Q 033923 24 FSPTTTVASLKEKIISRWP 42 (108)
Q Consensus 24 v~~~~TV~~LK~~I~~~~~ 42 (108)
.+++.|+++|++.|.+++.
T Consensus 9 t~~~~tl~~L~~eI~~~f~ 27 (73)
T PF10407_consen 9 TDPNNTLSQLKEEIEERFK 27 (73)
T ss_pred eCCCCcHHHHHHHHHHHHH
Confidence 6789999999999998765
No 147
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=29.84 E-value=1.7e+02 Score=22.04 Aligned_cols=41 Identities=12% Similarity=0.075 Sum_probs=29.8
Q ss_pred CCCCceEEEEEEeCCC--------CeeeeeEeCCcchHHHHHHHHHhhCC
Q 033923 1 MAGEDLIELKFRLADG--------ADIGPSKFSPTTTVASLKEKIISRWP 42 (108)
Q Consensus 1 ~~~~~~i~i~~r~~~g--------~~~~~l~v~~~~TV~~LK~~I~~~~~ 42 (108)
|+|-.++.|+|+.-+. +.+. +.+++.+||.++-..|.+...
T Consensus 1 ~~~~~~v~~~i~R~~~~~~~~~~~~~~~-v~~~~~~tvl~~L~~ik~~~d 49 (244)
T PRK12385 1 MAEMKNLKIEVLRYNPEVDTEPHSQTYE-VPYDETTSLLDALGYIKDNLA 49 (244)
T ss_pred CCCCcEEEEEEEeeCCCCCCCceeEEEE-eeCCCCCcHHHHHHHHHHhcC
Confidence 6788888888776442 2233 566799999999888887654
No 148
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=28.90 E-value=1.1e+02 Score=19.46 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=31.4
Q ss_pred CeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceE-EEEcCcccC
Q 033923 17 ADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQ-LIHAGKILE 65 (108)
Q Consensus 17 ~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qR-LIy~Gk~L~ 65 (108)
..+. |.|++..|=.++|+.|+.-++ +. +..++ +++.||.=.
T Consensus 21 n~~t-F~V~~~atK~~Ik~aie~iy~----V~---V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 21 NQYT-FEVDPRATKTEIKEAIEKIYG----VK---VKKVNTMNYPGKKKR 62 (91)
T ss_dssp SEEE-EEETTTSTHHHHHHHHHHHHT----SE---EEEEEEEEETSEEEE
T ss_pred CEEE-EEEeCCCCHHHHHHHHHhhcC----CC---eeEEEEeEeCCCceE
Confidence 4566 999999999999999999999 66 44444 366777443
No 149
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=28.49 E-value=1.7e+02 Score=21.95 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=31.6
Q ss_pred eEEEEEEeCC---CCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE
Q 033923 6 LIELKFRLAD---GADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI 58 (108)
Q Consensus 6 ~i~i~~r~~~---g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI 58 (108)
.+.|.|+-.. +..+. +.++..+|-.+|-++|++..+ .. |..+||.
T Consensus 176 rv~V~f~~~~~~~~~~F~-l~ls~~~tY~~la~~Va~~l~----~d---P~~lr~~ 223 (249)
T PF12436_consen 176 RVEVEFKPKDNPNDPEFT-LWLSKKMTYDQLAEKVAEHLN----VD---PEHLRFF 223 (249)
T ss_dssp EEEEEEEETTSTT---EE-EEEETT--HHHHHHHHHHHHT----S----GGGEEEE
T ss_pred eEEEEEEECCCCCCCCEE-EEECCCCCHHHHHHHHHHHHC----CC---hHHEEEE
Confidence 3567777642 33566 899999999999999999998 44 8999984
No 150
>PF11148 DUF2922: Protein of unknown function (DUF2922); InterPro: IPR021321 This bacterial family of proteins has no known function.
Probab=27.70 E-value=1.4e+02 Score=17.82 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=23.3
Q ss_pred eEEEEEEeCCCCeeeeeEeC---CcchHHHHHHHHH
Q 033923 6 LIELKFRLADGADIGPSKFS---PTTTVASLKEKII 38 (108)
Q Consensus 6 ~i~i~~r~~~g~~~~~l~v~---~~~TV~~LK~~I~ 38 (108)
.+.+.|...+|++.. +.++ .+-|-.++|+...
T Consensus 2 tL~l~F~~~~gk~~t-i~i~~pk~~lt~~~V~~~m~ 36 (69)
T PF11148_consen 2 TLELVFKTEDGKTFT-ISIPNPKEDLTEAEVKAAMQ 36 (69)
T ss_pred EEEEEEEcCCCCEEE-EEcCCCCCCCCHHHHHHHHH
Confidence 688999999999888 8776 4555555655444
No 151
>COG1978 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.87 E-value=1.6e+02 Score=21.01 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=27.1
Q ss_pred EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCC
Q 033923 9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWP 42 (108)
Q Consensus 9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~ 42 (108)
+-.|..+|..+. +.+.....|.+|+++|..+..
T Consensus 52 ~~~r~gsGa~~f-~~v~~v~ki~slrqrI~~Eta 84 (152)
T COG1978 52 VHHRSGSGAKVF-YNVEKVPKINSLRQRIMEETA 84 (152)
T ss_pred EEEEcCCCcEEE-EEeEEcCchhhHHHHHHHHHH
Confidence 456778898887 888888889999999998654
No 152
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=25.65 E-value=1.9e+02 Score=18.46 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=36.2
Q ss_pred EEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC
Q 033923 10 KFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG 61 (108)
Q Consensus 10 ~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G 61 (108)
.|-+.+|.... +.+.|++|+.++-+..-...+ ..|. ..-+||=+.+
T Consensus 3 ~V~lPn~~~~~-v~vrp~~tv~dvLe~aCk~~~----ldp~-eh~Lrlk~~~ 48 (77)
T cd01818 3 WVCLPDNQPVL-TYLRPGMSVEDFLESACKRKQ----LDPM-EHYLRLKFLR 48 (77)
T ss_pred EEECCCCceEE-EEECCCCCHHHHHHHHHHhcC----CChh-HheeEEEEEe
Confidence 46678999888 999999999999998888877 4444 5677775443
No 153
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=24.56 E-value=1.2e+02 Score=20.66 Aligned_cols=52 Identities=23% Similarity=0.299 Sum_probs=27.0
Q ss_pred CcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE-----------------EcCcc-cCCCCcccccCCCCCC
Q 033923 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLI-----------------HAGKI-LEDNMTIAESRLPVVE 79 (108)
Q Consensus 26 ~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI-----------------y~Gk~-L~D~~tL~~~~i~~~~ 79 (108)
.+.|..+|-..|.+..+..- .+-.-=..|+| +.|+. -+|+.||++++...|+
T Consensus 45 ~d~TLrEL~~Lik~~~~~~r--~~~tr~~F~~VypD~~~~r~~~kdlGsv~~g~~~~d~~kTL~~~~F~iGD 114 (120)
T PF06487_consen 45 MDATLRELADLIKDVNPPAR--RRGTRLSFRLVYPDTRSGRYVSKDLGSVVSGRKGPDDNKTLADLRFVIGD 114 (120)
T ss_dssp TT-BHHHHHHHHHHH-HHHH--STT-EEEEEEEEECTTTTCEEEEEEEEEETTB--TTTTSBCGGGT--TT-
T ss_pred ccCCHHHHHHHHHHhCcccC--CCCCEEEEEEEeecCCCCceeeecCCeEECCCCCCCcccCHhhCCcccCC
Confidence 78889998888876443100 00001123333 44443 3678999999999887
No 154
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=24.50 E-value=2e+02 Score=18.50 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=25.1
Q ss_pred EEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCC
Q 033923 10 KFRLADGADIGPSKFSPTTTVASLKEKIISRWP 42 (108)
Q Consensus 10 ~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~ 42 (108)
+++..-+.++-...++++.|-.+|.+++.+.++
T Consensus 2 ~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~ 34 (83)
T cd06404 2 RVKAAYNGDIMITSIDPSISLEELCNEVRDMCR 34 (83)
T ss_pred eEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhC
Confidence 444443334444899999999999999999988
No 155
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=24.42 E-value=2e+02 Score=18.97 Aligned_cols=46 Identities=17% Similarity=0.107 Sum_probs=32.8
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCccccc
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAES 73 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~ 73 (108)
+=++.+.||+++...|..... ..| -..+=|+.++.++..+.++++.
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~----l~~--~~alfl~Vn~~lp~~s~tm~el 82 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQ----LSP--EQALFLFVNNTLPSTSSTMGEL 82 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT------T--TS-EEEEBTTBESSTTSBHHHH
T ss_pred EEEcCCCchhhHHHHhhhhhc----CCC--CceEEEEEcCcccchhhHHHHH
Confidence 567899999999999999887 441 2445566666566788888874
No 156
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=24.39 E-value=65 Score=22.17 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=21.8
Q ss_pred CcchHHHHHHHHHhhCCCCCcCCCCCCCceE
Q 033923 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQ 56 (108)
Q Consensus 26 ~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qR 56 (108)
|+..-.++|++|+..|-. .|.+|-+||
T Consensus 96 PgLrlsQ~kq~l~K~w~K----SPeNP~NQ~ 122 (122)
T PF06244_consen 96 PGLRLSQYKQMLWKEWQK----SPENPFNQR 122 (122)
T ss_pred CCchHHHHHHHHHHHHhc----CCCCCccCC
Confidence 788889999999999974 566676664
No 157
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=23.59 E-value=1.2e+02 Score=24.46 Aligned_cols=67 Identities=13% Similarity=0.218 Sum_probs=47.4
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCC-CCcceEEEEEecC
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL-PGTAITMHVVLRP 93 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~-~~~~~tvhlv~~~ 93 (108)
+.++...||..||.-+..+.+.. -+ ..++-++|.+..|.+..||.+.....+.. -+.+..+|--+.+
T Consensus 168 vrcsa~~Tv~hlkkfl~~k~~~~--~~---~~~idi~~~d~~l~~~~TLk~i~~~~~~~~r~~pL~l~y~v~p 235 (331)
T KOG2660|consen 168 LRCSAAATVNHLKKFLRKKMDNL--SN---KSEIDILCEEELLGDYYTLKDIAYAYRWRSRDPPLPLRYRVKP 235 (331)
T ss_pred EeccHHHHHHHHHHHHHHHhccc--cc---hhhheeecCCccccchhhhhhhhhhhcccccCCcceeEecccc
Confidence 67888999999999999876611 23 78899999999999999999753322222 2334556555443
No 158
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=23.43 E-value=2.2e+02 Score=18.52 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=28.9
Q ss_pred CCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE
Q 033923 14 ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI 58 (108)
Q Consensus 14 ~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI 58 (108)
.+|-+...+-|.|..|+.+|=..++.+..- .. |++-.|+
T Consensus 10 ~sgct~KTL~V~P~~tt~~vc~lcA~Kf~V---~q---Pe~y~LF 48 (87)
T cd01776 10 NSGCTGKTLLVRPYITTEDVCQLCAEKFKV---TQ---PEEYSLF 48 (87)
T ss_pred CCCceeeeeecCCCCcHHHHHHHHHHHhcc---CC---hhheeEE
Confidence 355555558999999999999999999873 14 5666653
No 159
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.93 E-value=2.3e+02 Score=23.24 Aligned_cols=51 Identities=14% Similarity=0.116 Sum_probs=35.8
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEc---Ccc-----cCCCCcccccCCCCCC
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA---GKI-----LEDNMTIAESRLPVVE 79 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~---Gk~-----L~D~~tL~~~~i~~~~ 79 (108)
.-++-.-||-+++..+...-| +. +..+||+|- ||- ..-+..|-.|+|++|+
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VG----vk---~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGD 410 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVG----VK---FTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGD 410 (418)
T ss_pred eEEEeehHHHHHHHHhccccc----cc---cceeEEEEEcccCccCCccccCCCCcceEEeccCCC
Confidence 455667899999999998888 66 899999874 331 1113445556777776
No 160
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=21.49 E-value=1.4e+02 Score=20.20 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=17.1
Q ss_pred eEeCCcchHHHHHHHHHhhCCCC
Q 033923 22 SKFSPTTTVASLKEKIISRWPKE 44 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~ 44 (108)
++++...|+++|-+.+.++++.+
T Consensus 37 ~~v~~~~Tl~~li~~~~~~~~le 59 (125)
T PF09358_consen 37 IEVNGDMTLQELIDYFKEKYGLE 59 (125)
T ss_dssp EEEES--BHHHHHHHHHHTTS-E
T ss_pred EEEcCCCCHHHHHHHHHHHhCce
Confidence 56666899999999999999843
No 161
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=21.45 E-value=2.6e+02 Score=18.65 Aligned_cols=45 Identities=13% Similarity=0.049 Sum_probs=31.7
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCc-eEEEEcCcccCCCCccccc
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNN-VQLIHAGKILEDNMTIAES 73 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~-qRLIy~Gk~L~D~~tL~~~ 73 (108)
+-|+.+.||+++...|..... +. +++ +=|..++.+..-+.++++.
T Consensus 45 flVp~~~tv~~f~~~irk~l~----l~---~~~slfl~Vn~~~p~~~~~~~~l 90 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQ----LR---PEKALFLFVNNSLPPTSATMSQL 90 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhC----CC---ccceEEEEECCccCCchhHHHHH
Confidence 679999999999999988876 44 344 4444444444667777773
No 162
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=21.23 E-value=2.1e+02 Score=17.44 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=19.1
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcc
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTT 28 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~ 28 (108)
+..+++.++..+|+.++ +.+|+.+
T Consensus 53 ~g~yev~~~~~dG~~~e-v~vD~~t 76 (83)
T PF13670_consen 53 DGCYEVEARDKDGKKVE-VYVDPAT 76 (83)
T ss_pred CCEEEEEEEECCCCEEE-EEEcCCC
Confidence 33577888889999998 9998764
No 163
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=21.20 E-value=2.2e+02 Score=20.56 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=26.1
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHH
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKE 35 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~ 35 (108)
.+.|.|+|...+|..+. +...-.+||-++-.
T Consensus 41 ~e~i~Itfv~~dG~~~~-i~g~vGdtlLd~ah 71 (159)
T KOG3309|consen 41 VEDIKITFVDPDGEEIK-IKGKVGDTLLDAAH 71 (159)
T ss_pred CceEEEEEECCCCCEEE-eeeecchHHHHHHH
Confidence 45599999999999998 98888999888743
No 164
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=21.16 E-value=2e+02 Score=17.09 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=37.7
Q ss_pred EEEEEEeCCCC---eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCC
Q 033923 7 IELKFRLADGA---DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILED 66 (108)
Q Consensus 7 i~i~~r~~~g~---~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D 66 (108)
+.|+|....|. .-.++.++.+.|..+|-+.|-+-.+.+ .. +-...++..|..|.+
T Consensus 2 v~v~F~t~~~~~~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~--~~---~vpfdF~i~~~~lr~ 59 (65)
T PF08154_consen 2 VQVQFVTEDGEYEVPGTPISVPSNITRKELSELVNQLLDDE--EE---PVPFDFLINGEELRT 59 (65)
T ss_pred EEEEEEcCCCCccCCCCCEEEeCCCCHHHHHHHHHHHhccC--CC---CCcEEEEECCEEeec
Confidence 56777777662 112589999999999988887766222 23 556777788877753
No 165
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=21.01 E-value=2e+02 Score=26.57 Aligned_cols=85 Identities=15% Similarity=0.103 Sum_probs=54.6
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCC-Cc---CCCCCCCceEEEEcC---cccCCCCcccccCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KE---NGPKTVNNVQLIHAG---KILEDNMTIAESRL 75 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~-~~---i~p~~~~~qRLIy~G---k~L~D~~tL~~~~i 75 (108)
..+.+-|-+-+.+|.... +++....|+..+|.+++.+--.- |- ..|. +...+.|++- -.+.|+ +..=|.+
T Consensus 34 ~~~~i~i~~llP~G~~~~-l~v~~e~tls~iK~~l~~~a~~~pl~~~l~~~~-~Y~F~~lnq~a~~ee~~De-trrl~dl 110 (1076)
T KOG0904|consen 34 SMGSIPIEFLLPTGFLAN-LRVSREATLSTIKHQLWKRALEMPLGALLHDPG-SYVFLCLNQFAEWEEFEDE-TRRLCDL 110 (1076)
T ss_pred cCCceeEEEEcCCceEEE-EeccccccHHHHHHHHHHHHhhCcHHHHhcCcc-ceEEEEecccceeEecccc-hhhhhhh
Confidence 345677888899999888 99999999999999999753210 00 0133 5566666665 234554 6555666
Q ss_pred CCCCCCCcceEEEEEecCCCC
Q 033923 76 PVVELPGTAITMHVVLRPSLP 96 (108)
Q Consensus 76 ~~~~~~~~~~tvhlv~~~~~~ 96 (108)
+.-- .++-++++.+.
T Consensus 111 r~~~------p~L~lv~~~g~ 125 (1076)
T KOG0904|consen 111 RPFF------PVLRLVQRHGD 125 (1076)
T ss_pred cccc------ceeeeeccCCC
Confidence 5332 45555555544
No 166
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=20.69 E-value=1.8e+02 Score=26.90 Aligned_cols=52 Identities=19% Similarity=0.351 Sum_probs=37.9
Q ss_pred CCCeeeeeEeC-CcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE-EcCcccCCCCcccccC
Q 033923 15 DGADIGPSKFS-PTTTVASLKEKIISRWPKEKENGPKTVNNVQLI-HAGKILEDNMTIAESR 74 (108)
Q Consensus 15 ~g~~~~~l~v~-~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI-y~Gk~L~D~~tL~~~~ 74 (108)
.|.+.. |... .+.|+.+||..|+.+.| .. ...+.|+ -+|-++..+..|.+|.
T Consensus 3 rGqalt-FDleaetqT~adLk~aiqke~~----~a---Iq~~tfl~egGecmaadkrl~e~S 56 (1424)
T KOG4572|consen 3 RGQALT-FDLEAETQTFADLKDAIQKEVG----HA---IQDLTFLDEGGECMAADKRLAEIS 56 (1424)
T ss_pred CCceeE-EeecceeehHHHHHHHHHHHhc----hh---hceeeeeecCCcCcccccchhhhc
Confidence 355554 5554 46899999999999999 45 5566654 4666888888888886
No 167
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=20.69 E-value=2.4e+02 Score=18.00 Aligned_cols=20 Identities=20% Similarity=0.106 Sum_probs=15.6
Q ss_pred EeCCcchHHHHHHHHHhhCC
Q 033923 23 KFSPTTTVASLKEKIISRWP 42 (108)
Q Consensus 23 ~v~~~~TV~~LK~~I~~~~~ 42 (108)
..+...||++|-+.|.+.++
T Consensus 24 ~~~~~~tV~dll~~L~~~~~ 43 (94)
T cd01764 24 DGEKPVTVGDLLDYVASNLL 43 (94)
T ss_pred cCCCCCcHHHHHHHHHHhCc
Confidence 34356799999999988875
No 168
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=20.67 E-value=2e+02 Score=18.46 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=30.0
Q ss_pred CCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCc
Q 033923 16 GADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK 62 (108)
Q Consensus 16 g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk 62 (108)
.+.+. |.|++..|=.++|+.|+.-++ +.+.+.+. +++.|+
T Consensus 20 ~n~~~-F~V~~~a~K~eIK~aie~lf~----VkV~~VnT--~~~~gk 59 (92)
T PRK05738 20 QNKYV-FEVAPDATKPEIKAAVEKLFG----VKVESVNT--LNVKGK 59 (92)
T ss_pred CCEEE-EEECCCCCHHHHHHHHHHHcC----CceeEEEE--EEeCCc
Confidence 45676 999999999999999999998 66433333 345554
No 169
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=20.24 E-value=1.2e+02 Score=19.25 Aligned_cols=55 Identities=24% Similarity=0.195 Sum_probs=31.7
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcC-CC-CCCCceEEEEcCc-ccC----C--CCcccccCCCCCC
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKEN-GP-KTVNNVQLIHAGK-ILE----D--NMTIAESRLPVVE 79 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i-~p-~~~~~qRLIy~Gk-~L~----D--~~tL~~~~i~~~~ 79 (108)
+++++++|..+|-+.+.+...-. . .| -+.+.-.|++.+- .|+ . +.+|.+. +.+|+
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~q--lk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ 64 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQ--LKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGE 64 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT----SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSE
T ss_pred CCcCccchHHHHHHHHHhChhhh--cCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCC
Confidence 57899999999999999863211 1 12 1145555655443 121 1 3556666 55554
No 170
>PRK05841 flgE flagellar hook protein FlgE; Validated
Probab=20.23 E-value=1.7e+02 Score=25.51 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=32.3
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCc---------chHHHHHHHHHhhCCCCCc
Q 033923 4 EDLIELKFRLADGADIGPSKFSPT---------TTVASLKEKIISRWPKEKE 46 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~---------~TV~~LK~~I~~~~~~~~~ 46 (108)
.+.+.|.|...+|+... +.+... -|+++||..|.++.|.+.+
T Consensus 246 ~~~~~i~~~~~~g~~~~-~~~~~~~~~~~~~~f~~~~~l~~~~~~~~~~~~~ 296 (603)
T PRK05841 246 NRKLNITIQKEDGKKED-FVFTYGDAEKGENQFKTLGDLKKLLKEKTGLDLN 296 (603)
T ss_pred CCeEEEEEecCCCcEEE-EEEeecCccccCCceeechhhhhhhhhccccccc
Confidence 56788999889998776 666544 4689999999998775543
No 171
>cd00559 Cyanase_C Cyanase C-terminal domain. Cyanase (Cyanate lyase) is responsible for the hydrolysis of cyanate. It catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide. This allows organisms that possess the enzyme to overcome the toxicity of environmental cyanate and to use cyanate as a source of nitrogen for growth. This enzyme is a homodecamer, formed by five dimers. Each monomer is composed of two domains, an N-terminal helix-turn-helix and this structurally unique C-terminal domain.
Probab=20.18 E-value=1.9e+02 Score=18.08 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=20.9
Q ss_pred HHHHHHHhhCCCCCcCC--------------CCCCCceEEEEcCcccC
Q 033923 32 SLKEKIISRWPKEKENG--------------PKTVNNVQLIHAGKILE 65 (108)
Q Consensus 32 ~LK~~I~~~~~~~~~i~--------------p~~~~~qRLIy~Gk~L~ 65 (108)
.+|+.|.++.|.. |. |. -++..+.++||.|.
T Consensus 21 ~~K~li~E~FGDG--IMSAIdF~~~v~k~~dp~-gdRvvit~~GKfLp 65 (69)
T cd00559 21 TLKALIHEKFGDG--IMSAIDFKLDVDKVEDPG-GDRVVITLDGKFLP 65 (69)
T ss_pred HHHHHHHHHcCCc--eeeeEEeeeeEEeccCCC-CCEEEEEEcceecc
Confidence 4788888777632 21 32 57788888888884
Done!