Query 033923
Match_columns 108
No_of_seqs 114 out of 1038
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 13:02:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033923.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033923hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1se9_A Ubiquitin family; ubiqu 99.9 7.2E-27 2.5E-31 160.7 13.5 96 4-99 14-109 (126)
2 2gow_A HCG-1 protein, ubiquiti 99.9 1.2E-24 4.2E-29 149.2 12.0 94 3-101 14-108 (125)
3 1wgh_A Ubiquitin-like 3, HCG-1 99.9 1.8E-24 6.3E-29 146.7 12.7 95 4-103 14-109 (116)
4 4fbj_B NEDD8; effector-HOST ta 99.9 9.1E-22 3.1E-26 126.2 9.0 86 7-106 1-86 (88)
5 3phx_B Ubiquitin-like protein 99.9 3.6E-21 1.2E-25 120.2 10.0 77 5-95 3-79 (79)
6 4dwf_A HLA-B-associated transc 99.9 3.2E-21 1.1E-25 123.2 9.8 83 3-100 2-84 (90)
7 3plu_A Ubiquitin-like modifier 99.9 2.7E-21 9.4E-26 126.6 9.1 75 2-90 17-91 (93)
8 1wgd_A Homocysteine-responsive 99.8 6.5E-21 2.2E-25 123.0 9.6 85 3-99 4-92 (93)
9 1wy8_A NP95-like ring finger p 99.8 2.9E-20 9.9E-25 118.4 11.4 83 3-99 4-88 (89)
10 3dbh_I NEDD8; cell cycle, acti 99.8 1.2E-20 4E-25 119.5 9.3 80 3-96 9-88 (88)
11 4hcn_B Polyubiquitin, ubiquiti 99.8 1.6E-20 5.4E-25 122.5 8.8 80 3-96 19-98 (98)
12 3v6c_B Ubiquitin; structural g 99.8 3.4E-20 1.2E-24 119.1 9.9 78 3-94 14-91 (91)
13 4eew_A Large proline-rich prot 99.8 2.5E-20 8.6E-25 118.6 9.1 75 3-92 14-88 (88)
14 3mtn_B UBA80, ubcep1, ubiquiti 99.8 4.2E-20 1.4E-24 115.9 9.8 80 5-98 2-81 (85)
15 1uh6_A Ubiquitin-like 5; beta- 99.8 1.3E-20 4.3E-25 124.9 7.5 76 2-91 24-99 (100)
16 2kan_A Uncharacterized protein 99.8 5.6E-20 1.9E-24 119.6 10.3 81 3-98 12-93 (94)
17 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 6.5E-20 2.2E-24 116.2 10.3 81 3-97 4-84 (87)
18 2uyz_B Small ubiquitin-related 99.8 2.3E-20 7.8E-25 116.5 7.9 78 5-96 2-79 (79)
19 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 4.9E-20 1.7E-24 118.8 9.7 80 7-100 2-81 (96)
20 3n3k_B Ubiquitin; hydrolase, p 99.8 2.7E-20 9.1E-25 117.0 8.2 81 5-99 2-82 (85)
21 2hj8_A Interferon-induced 17 k 99.8 3.9E-20 1.3E-24 118.4 8.9 80 5-98 3-82 (88)
22 3m62_B UV excision repair prot 99.8 3E-20 1E-24 123.2 8.5 76 7-96 2-77 (106)
23 2kk8_A Uncharacterized protein 99.8 3.3E-20 1.1E-24 118.5 8.4 75 5-93 9-84 (84)
24 2lxa_A Ubiquitin-like protein 99.8 2E-20 6.9E-25 120.8 7.4 76 7-96 2-81 (87)
25 1ndd_A NEDD8, protein (ubiquit 99.8 6.7E-20 2.3E-24 112.5 9.4 76 7-96 1-76 (76)
26 1wju_A NEDD8 ultimate buster-1 99.8 7.1E-20 2.4E-24 121.3 10.0 82 3-99 12-97 (100)
27 2faz_A Ubiquitin-like containi 99.8 8E-20 2.8E-24 113.6 9.7 75 6-94 2-78 (78)
28 2dzi_A Ubiquitin-like protein 99.8 8.4E-20 2.9E-24 113.8 9.6 78 3-94 4-81 (81)
29 1wyw_B Ubiquitin-like protein 99.8 4.5E-20 1.5E-24 120.4 8.7 79 4-96 19-97 (97)
30 1uel_A HHR23B, UV excision rep 99.8 2.3E-19 8E-24 116.3 11.7 79 7-99 1-82 (95)
31 3a9j_A Ubiquitin; protein comp 99.8 1.2E-19 4.2E-24 111.3 9.8 76 7-96 1-76 (76)
32 2wyq_A HHR23A, UV excision rep 99.8 1.8E-19 6.2E-24 113.5 10.6 77 5-95 4-83 (85)
33 4a20_A Ubiquitin-like protein 99.8 1.5E-19 5.3E-24 119.0 10.1 78 3-94 16-97 (98)
34 1sif_A Ubiquitin; hydrophobic 99.8 1.1E-19 3.9E-24 116.4 8.7 78 6-97 9-86 (88)
35 3vdz_A Ubiquitin-40S ribosomal 99.8 2.5E-19 8.7E-24 119.5 9.8 78 5-96 34-111 (111)
36 1ttn_A DC-UBP, dendritic cell- 99.8 2.9E-19 9.9E-24 118.2 10.0 81 4-98 21-101 (106)
37 2kdb_A Homocysteine-responsive 99.8 8.4E-20 2.9E-24 120.4 7.1 75 4-90 21-99 (99)
38 1wx8_A Riken cDNA 4931431F19; 99.8 1.7E-19 5.8E-24 116.7 7.8 81 3-98 14-94 (96)
39 1yx5_B Ubiquitin; proteasome, 99.8 8.9E-19 3E-23 113.8 10.5 77 7-97 1-77 (98)
40 1we6_A Splicing factor, putati 99.8 7.5E-19 2.6E-23 116.9 10.1 80 5-98 26-109 (111)
41 2bwf_A Ubiquitin-like protein 99.8 8.7E-19 3E-23 108.2 9.6 72 7-93 5-76 (77)
42 2kdi_A Ubiquitin, vacuolar pro 99.8 8E-19 2.7E-23 117.8 10.0 81 5-99 8-88 (114)
43 2l7r_A Ubiquitin-like protein 99.8 3.8E-19 1.3E-23 115.2 8.1 76 5-96 18-93 (93)
44 3l0w_B Monoubiquitinated proli 99.8 7.1E-19 2.4E-23 125.3 10.3 80 7-100 1-80 (169)
45 1we7_A SF3A1 protein; structur 99.8 8.9E-19 3E-23 117.3 10.1 81 5-99 24-114 (115)
46 1wx7_A Ubiquilin 3; ubiquitin- 99.8 8.7E-19 3E-23 115.6 9.8 81 3-98 14-94 (106)
47 1yqb_A Ubiquilin 3; structural 99.8 7.3E-19 2.5E-23 115.5 9.1 81 3-98 19-99 (100)
48 2klc_A Ubiquilin-1; ubiquitin- 99.8 1.3E-18 4.3E-23 114.4 10.1 79 3-96 22-100 (101)
49 3rt3_B Ubiquitin-like protein 99.8 1.1E-18 3.9E-23 121.4 10.1 79 5-97 80-158 (159)
50 1v2y_A 3300001G02RIK protein; 99.8 4E-19 1.4E-23 118.5 7.3 84 2-96 3-99 (105)
51 2daf_A FLJ35834 protein; hypot 99.8 6.6E-19 2.3E-23 119.6 8.5 81 3-97 12-93 (118)
52 1j8c_A Ubiquitin-like protein 99.8 1.3E-18 4.3E-23 118.7 9.8 82 3-99 29-110 (125)
53 1wia_A Hypothetical ubiquitin- 99.8 2.6E-18 9E-23 111.0 10.1 82 2-100 3-85 (95)
54 2ojr_A Ubiquitin; lanthide-bin 99.8 2.6E-18 9E-23 114.4 10.3 78 5-96 34-111 (111)
55 3b1l_X E3 ubiquitin-protein li 99.6 3.1E-20 1.1E-24 114.8 0.0 75 7-95 1-75 (76)
56 1v5o_A 1700011N24RIK protein; 99.8 3.9E-18 1.3E-22 112.0 10.0 85 4-102 5-94 (102)
57 4ajy_B Transcription elongatio 99.8 1.3E-18 4.3E-23 118.3 7.3 79 8-94 2-82 (118)
58 3q3f_A Ribonuclease/ubiquitin 99.8 2.7E-18 9.1E-23 124.8 9.3 82 4-99 103-184 (189)
59 3u5c_f 40S ribosomal protein S 99.8 6.2E-20 2.1E-24 129.3 0.4 82 7-102 1-82 (152)
60 1x1m_A Ubiquitin-like protein 99.8 6.9E-18 2.4E-22 111.8 9.9 80 5-98 11-105 (107)
61 3m63_B Ubiquitin domain-contai 99.7 1E-18 3.4E-23 115.1 5.3 75 4-93 26-100 (101)
62 2fnj_B Transcription elongatio 99.7 2E-18 6.7E-23 117.4 6.7 76 9-92 3-80 (118)
63 1wgg_A Ubiquitin carboxyl-term 99.7 9.5E-18 3.3E-22 109.5 9.3 78 2-95 3-81 (96)
64 3u30_A Ubiquitin, linear DI-ub 99.7 1.1E-17 3.8E-22 118.1 10.1 80 3-96 17-96 (172)
65 1wxv_A BAG-family molecular ch 99.7 2.9E-17 9.9E-22 105.5 10.0 80 3-97 4-89 (92)
66 3u30_A Ubiquitin, linear DI-ub 99.7 1.2E-17 4.2E-22 117.9 8.4 78 5-96 95-172 (172)
67 3u5e_m 60S ribosomal protein L 99.7 3.9E-19 1.3E-23 121.1 0.2 77 7-97 1-77 (128)
68 3b08_A Polyubiquitin-C, ubiqui 99.7 4.5E-17 1.5E-21 111.4 10.2 77 6-96 76-152 (152)
69 4dbg_A Ranbp-type and C3HC4-ty 99.7 3.9E-17 1.3E-21 109.0 9.1 75 6-94 24-101 (105)
70 3rt3_B Ubiquitin-like protein 99.7 5.5E-17 1.9E-21 112.8 9.9 73 7-93 3-77 (159)
71 2kd0_A LRR repeats and ubiquit 99.7 3.2E-17 1.1E-21 104.5 7.8 70 10-93 15-84 (85)
72 1v5t_A 8430435I17RIK protein; 99.7 4.8E-17 1.6E-21 104.6 8.0 78 3-95 4-85 (90)
73 1v86_A DNA segment, CHR 7, way 99.7 2.7E-17 9.3E-22 106.9 6.7 79 3-97 14-92 (95)
74 3b08_A Polyubiquitin-C, ubiqui 99.7 1.4E-16 4.9E-21 108.9 9.8 76 7-96 1-76 (152)
75 4b6w_A Tubulin-specific chaper 99.7 2.1E-16 7.2E-21 101.6 8.6 74 7-94 3-85 (86)
76 2kjr_A CG11242; UBL, ubiquitin 99.7 2.8E-16 9.6E-21 102.7 8.6 74 3-90 12-93 (95)
77 1oqy_A HHR23A, UV excision rep 99.7 2.6E-16 9.1E-21 124.0 9.0 85 3-97 4-88 (368)
78 2kj6_A Tubulin folding cofacto 99.6 5.5E-16 1.9E-20 101.8 8.4 77 2-92 10-95 (97)
79 2xzm_9 RPS31E; ribosome, trans 99.6 1.7E-17 5.8E-22 120.7 1.0 75 7-100 1-75 (189)
80 3ai5_A Yeast enhanced green fl 99.6 8.5E-16 2.9E-20 118.7 9.3 77 4-94 231-307 (307)
81 2dzj_A Synaptic glycoprotein S 99.6 2.4E-15 8.4E-20 96.8 7.1 71 6-89 10-85 (88)
82 1wf9_A NPL4 family protein; be 99.6 5.1E-15 1.7E-19 98.1 8.2 79 3-96 4-98 (107)
83 2io1_B Small ubiquitin-related 99.6 7.3E-15 2.5E-19 95.8 8.6 81 3-97 4-84 (94)
84 2dzm_A FAS-associated factor 1 99.6 7.8E-15 2.7E-19 96.8 7.8 75 7-96 9-85 (100)
85 1v6e_A Cytoskeleton-associated 99.6 3.1E-14 1.1E-18 92.2 10.1 75 5-93 6-88 (95)
86 2io0_B Small ubiquitin-related 99.6 5.7E-14 2E-18 91.1 10.6 83 4-100 3-85 (91)
87 1t0y_A Tubulin folding cofacto 99.5 7.7E-14 2.6E-18 94.3 9.6 74 6-93 6-87 (122)
88 3shq_A UBLCP1; phosphatase, hy 99.5 4.4E-14 1.5E-18 109.4 7.2 78 3-95 2-82 (320)
89 2d07_B Ubiquitin-like protein 99.5 1.8E-13 6.3E-18 88.8 8.9 79 4-96 15-93 (93)
90 1wz0_A Ubiquitin-like protein 99.5 1.9E-13 6.4E-18 90.7 8.9 81 4-98 22-102 (104)
91 1wm3_A Ubiquitin-like protein 99.4 4.7E-13 1.6E-17 82.8 8.1 70 7-90 2-71 (72)
92 3a4r_A Nfatc2-interacting prot 99.4 7.8E-13 2.7E-17 83.4 8.9 75 2-90 3-78 (79)
93 2k8h_A Small ubiquitin protein 99.4 4.4E-13 1.5E-17 89.8 7.4 79 4-96 24-102 (110)
94 2eke_C Ubiquitin-like protein 99.4 9.7E-13 3.3E-17 87.7 8.7 79 3-96 28-106 (106)
95 2kzr_A Ubiquitin thioesterase 99.4 6E-13 2.1E-17 84.5 7.3 72 7-93 1-78 (86)
96 1wjn_A Tubulin-folding protein 99.3 4.1E-11 1.4E-15 77.5 10.4 76 4-93 7-93 (97)
97 3kyd_D Small ubiquitin-related 99.1 3E-10 1E-14 76.6 9.4 78 3-94 37-114 (115)
98 3pge_A SUMO-modified prolifera 99.1 8.8E-10 3E-14 80.6 9.7 82 4-100 27-108 (200)
99 3tix_A Ubiquitin-like protein 98.9 3.8E-09 1.3E-13 77.1 7.9 80 4-98 55-134 (207)
100 3v7o_A Minor nucleoprotein VP3 98.6 5.6E-09 1.9E-13 77.1 0.2 79 4-97 19-97 (227)
101 4efo_A Serine/threonine-protei 98.5 3.9E-07 1.3E-11 59.3 6.7 54 13-74 20-75 (94)
102 2pjh_A Protein NPL4, nuclear p 98.5 1.2E-07 4E-12 59.7 3.8 66 5-79 3-73 (80)
103 2jxx_A Nfatc2-interacting prot 98.5 1.4E-06 4.9E-11 56.8 9.0 69 3-79 22-91 (97)
104 3goe_A DNA repair protein RAD6 98.4 2.5E-06 8.6E-11 54.0 9.0 67 5-79 8-75 (82)
105 3uf8_A Ubiquitin-like protein 98.3 2E-06 6.8E-11 62.6 8.3 79 4-97 19-97 (209)
106 3ix6_A TS, tsase, thymidylate 98.3 9.6E-08 3.3E-12 75.1 -0.4 80 3-97 18-97 (360)
107 3qx1_A FAS-associated factor 1 98.1 2E-05 7E-10 49.3 8.5 68 3-79 4-76 (84)
108 2l76_A Nfatc2-interacting prot 98.1 3.2E-05 1.1E-09 50.3 9.1 74 4-92 19-92 (95)
109 4da1_A Protein phosphatase 1K, 98.0 7.2E-07 2.5E-11 69.7 0.0 80 3-97 27-106 (389)
110 2bps_A YUKD protein; ubiquitin 98.0 4.2E-05 1.4E-09 48.4 7.6 73 4-79 2-76 (81)
111 2dzk_A UBX domain-containing p 97.9 0.00022 7.6E-09 46.9 10.4 77 3-93 10-91 (109)
112 1wj4_A KIAA0794 protein; UBX d 97.8 0.00015 5.1E-09 48.9 8.5 68 3-79 40-112 (124)
113 1s3s_G P47 protein; AAA ATPase 97.6 0.00017 5.8E-09 48.7 6.9 69 3-78 49-120 (127)
114 2kc2_A Talin-1, F1; FERM, adhe 97.5 9.5E-05 3.3E-09 50.4 4.0 67 8-79 13-115 (128)
115 2cr5_A Reproduction 8; UBX dom 97.4 0.0018 6.2E-08 42.4 9.6 67 4-79 21-91 (109)
116 3ivf_A Talin-1; FERM domain, c 97.0 0.0045 1.5E-07 47.6 9.1 69 6-79 3-77 (371)
117 4e71_A Plexin-B2, MM1; transme 96.8 0.012 4E-07 39.2 8.8 81 4-92 9-110 (111)
118 2al3_A TUG long isoform; TUG U 96.7 0.013 4.6E-07 37.5 8.0 76 7-96 10-85 (90)
119 2r2o_A Plexin-B1; effector dom 96.5 0.023 7.8E-07 39.1 8.8 83 4-94 22-130 (138)
120 3h6n_A Plexin-D1; structural g 95.8 0.11 3.8E-06 35.2 9.3 70 16-93 16-105 (127)
121 4e74_A Plexin-A4; RBD, structu 95.2 0.17 5.9E-06 33.7 8.5 82 4-93 11-115 (117)
122 4a3p_A Ubiquitin carboxyl-term 93.9 0.74 2.5E-05 33.0 9.9 67 6-79 127-201 (217)
123 3hm6_X Plexin-B1; structural g 93.1 0.62 2.1E-05 39.0 9.2 82 4-93 255-362 (644)
124 3kuz_A Plexin-C1; structural g 93.0 0.78 2.7E-05 30.9 8.2 58 18-79 40-119 (126)
125 1oey_A P67-PHOX, neutrophil cy 92.8 0.36 1.2E-05 30.2 5.9 47 6-62 5-51 (83)
126 3jyu_A Ubiquitin carboxyl-term 92.7 1.6 5.4E-05 31.6 10.1 67 6-79 139-213 (231)
127 3ig3_A Plxna3 protein; plexin 91.7 1.5 5.1E-05 36.6 9.9 82 4-93 231-335 (627)
128 3ge3_C Toluene-4-monooxygenase 90.4 2.2 7.5E-05 26.8 9.8 71 7-79 4-76 (84)
129 2daj_A KIAA0977 protein, COBL- 89.9 0.35 1.2E-05 30.8 3.5 68 2-77 6-76 (91)
130 1ef1_A Moesin; membrane, FERM 88.9 3.6 0.00012 29.9 9.1 76 6-93 1-81 (294)
131 1h4r_A Merlin; FERM, neurofibr 88.8 3.7 0.00013 30.3 9.2 78 4-93 20-101 (314)
132 2v1y_A Phosphatidylinositol-4, 88.0 1 3.5E-05 29.5 5.0 35 5-40 18-52 (108)
133 2i1j_A Moesin; FERM, coiled-co 86.4 5.3 0.00018 32.6 9.5 79 4-94 2-85 (575)
134 3po0_A Small archaeal modifier 85.7 4.2 0.00014 24.5 7.4 56 17-79 18-78 (89)
135 3ivf_A Talin-1; FERM domain, c 85.7 8.6 0.00029 29.1 9.9 74 6-92 85-167 (371)
136 2kvr_A Ubiquitin carboxyl-term 85.3 0.68 2.3E-05 31.0 3.1 33 21-60 59-91 (130)
137 1vjk_A Molybdopterin convertin 84.2 5.5 0.00019 24.6 8.8 68 5-79 8-87 (98)
138 2y3a_A Phosphatidylinositol-4, 84.0 11 0.00037 33.4 10.7 83 3-93 48-137 (1092)
139 2c7h_A RBBP6, retinoblastoma-b 83.3 3.7 0.00013 25.8 5.7 37 6-42 6-43 (86)
140 4eut_A Serine/threonine-protei 83.1 8.6 0.0003 28.7 8.8 47 21-74 325-373 (396)
141 2juo_A GA-binding protein alph 81.2 2.5 8.6E-05 26.7 4.3 51 22-79 7-57 (89)
142 2inc_C TOUB protein; DIIRON, 4 80.9 7.9 0.00027 24.1 10.9 57 21-79 16-75 (83)
143 3qij_A Protein 4.1; cytoskelet 80.1 2 7E-05 31.8 4.2 78 3-93 14-96 (296)
144 2l32_A Small archaeal modifier 79.1 5.8 0.0002 23.7 5.4 49 8-68 2-50 (74)
145 1wgr_A Growth factor receptor- 78.2 5.7 0.0002 25.4 5.4 65 5-73 8-75 (100)
146 2q5w_D Molybdopterin convertin 77.5 7.4 0.00025 22.6 5.5 45 22-79 20-66 (77)
147 3au4_A Myosin-X; protein-prote 74.5 16 0.00054 29.2 8.2 62 4-71 214-279 (555)
148 1wgk_A Riken cDNA 2900073H19 p 70.4 19 0.00064 23.2 6.8 37 5-42 10-57 (114)
149 3qa8_A MGC80376 protein; kinas 69.4 6.8 0.00023 32.7 5.1 53 15-75 320-373 (676)
150 3rpf_C Molybdopterin convertin 68.1 15 0.00052 21.3 8.4 62 8-79 2-63 (74)
151 1vd2_A Protein kinase C, IOTA 67.3 20 0.00068 22.3 7.7 59 5-72 5-63 (89)
152 2ylm_A Ubiquitin carboxyl-term 65.9 3.9 0.00013 33.0 2.9 33 21-60 39-71 (530)
153 1ip9_A BEM1 protein; ubiquitin 63.2 22 0.00075 22.2 5.4 35 6-42 12-46 (85)
154 3pvl_A Myosin VIIA isoform 1; 59.9 35 0.0012 28.2 7.7 49 5-60 262-310 (655)
155 1ryj_A Unknown; beta/alpha pro 59.3 23 0.00079 20.4 8.7 55 7-79 5-59 (70)
156 2kmm_A Guanosine-3',5'-BIS(dip 57.8 12 0.00043 21.2 3.5 29 8-39 2-30 (73)
157 2ylm_A Ubiquitin carboxyl-term 57.3 23 0.00078 28.5 6.0 48 22-73 356-408 (530)
158 3onh_A Ubiquitin-activating en 56.5 16 0.00056 24.4 4.2 59 21-79 9-72 (127)
159 2g1e_A Hypothetical protein TA 52.7 33 0.0011 20.1 5.1 60 22-91 19-85 (90)
160 4gmv_A RAS-associated and plec 51.3 31 0.0011 25.7 5.5 38 4-42 29-66 (281)
161 1y8x_B Ubiquitin-activating en 49.9 39 0.0013 21.3 5.1 59 22-90 9-82 (98)
162 1rws_A Hypothetical protein PF 48.4 8.3 0.00028 22.8 1.6 42 22-79 25-66 (77)
163 3eud_A Protein SHQ1; CS domain 47.4 21 0.00072 23.4 3.6 68 4-94 26-97 (115)
164 3hhm_A Phosphatidylinositol-4, 47.3 23 0.00079 31.4 4.7 78 6-94 42-129 (1091)
165 2qjl_A URM1, ubiquitin-related 46.9 47 0.0016 20.2 5.2 22 22-43 24-47 (99)
166 4eku_A Protein-tyrosine kinase 45.6 32 0.0011 26.6 4.9 61 8-73 23-97 (392)
167 3dwg_C 9.5 kDa culture filtrat 43.5 51 0.0017 19.6 8.7 63 22-93 21-90 (93)
168 2wlb_A ETP1-FD, electron trans 42.0 56 0.0019 19.8 5.0 30 5-35 2-31 (103)
169 3hk0_A Growth factor receptor- 37.6 45 0.0015 24.4 4.4 36 6-42 8-43 (256)
170 1f0z_A THis protein; ubiquitin 37.5 55 0.0019 18.3 4.0 51 14-79 5-55 (66)
171 3tca_A Amyloid beta A4 precurs 35.1 69 0.0024 22.5 5.1 36 6-42 34-69 (291)
172 4a6q_A Histone deacetylase com 33.9 43 0.0015 22.7 3.5 60 26-94 62-140 (143)
173 2l52_A Methanosarcina acetivor 33.7 81 0.0028 19.2 8.1 67 6-79 3-88 (99)
174 4dxa_B KREV interaction trappe 32.4 41 0.0014 24.8 3.5 49 5-62 4-54 (322)
175 1wz3_A Autophagy 12B, ATG12B, 30.8 72 0.0025 19.9 4.0 58 5-73 12-75 (96)
176 3hvz_A Uncharacterized protein 30.6 66 0.0023 19.1 3.7 32 8-42 7-38 (78)
177 2bt6_A Adrenodoxin 1; rutheniu 29.7 72 0.0025 19.5 3.9 29 4-33 4-32 (108)
178 1q1o_A Cell division control p 28.5 1.1E+02 0.0039 19.2 5.2 51 6-61 5-64 (98)
179 3hui_A Ferredoxin; cytochrome 28.1 89 0.0031 20.1 4.3 30 3-33 18-47 (126)
180 4eo0_A Attachment protein G3P; 28.0 68 0.0023 20.5 3.5 25 32-65 58-82 (115)
181 1fm0_D Molybdopterin convertin 27.9 88 0.003 17.8 8.0 54 22-91 21-76 (81)
182 2k8q_A Protein SHQ1; beta-sand 27.5 1.4E+02 0.0047 19.9 5.5 70 3-95 11-84 (134)
183 2y5c_A Adrenodoxin-like protei 27.5 87 0.003 19.1 4.0 28 5-33 4-31 (109)
184 1tyg_B YJBS; alpha beta barrel 27.4 1.1E+02 0.0037 18.6 5.6 51 14-79 25-76 (87)
185 3lxf_A Ferredoxin; iron, iron- 26.0 88 0.003 19.2 3.8 26 8-34 2-27 (104)
186 2k9x_A Tburm1, uncharacterized 24.1 1.3E+02 0.0046 18.9 4.5 27 15-42 19-49 (110)
187 2al6_A Focal adhesion kinase 1 24.1 62 0.0021 24.5 3.3 57 9-72 10-76 (375)
188 2dhz_A RAP guanine nucleotide 23.6 1.6E+02 0.0054 19.2 5.8 38 4-42 7-44 (120)
189 1wgy_A RAP guanine nucleotide 23.2 1.1E+02 0.0036 19.6 3.8 37 5-42 8-44 (104)
190 2cu1_A Mitogen-activated prote 21.5 1.7E+02 0.0057 18.7 5.6 36 5-42 7-42 (103)
191 1frr_A Ferredoxin I; electron 21.3 1.2E+02 0.0042 17.7 3.7 27 7-35 2-28 (95)
192 1v8c_A MOAD related protein; r 20.8 1.9E+02 0.0064 19.5 5.0 60 22-92 18-83 (168)
No 1
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.95 E-value=7.2e-27 Score=160.67 Aligned_cols=96 Identities=52% Similarity=0.930 Sum_probs=87.0
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~ 83 (108)
++.++|+||+.+|+++.++++++++||.+||++|++.||.+++.-|+++++|||||+||+|+|+.||++|+|+.+++|+.
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 57899999999999996699999999999999999999988764444479999999999999999999999999987777
Q ss_pred ceEEEEEecCCCCCCC
Q 033923 84 AITMHVVLRPSLPDKK 99 (108)
Q Consensus 84 ~~tvhlv~~~~~~~~~ 99 (108)
+++||||+++++++++
T Consensus 94 v~tmhlVlrl~g~~kk 109 (126)
T 1se9_A 94 VTTMHVIIQAPVTEKE 109 (126)
T ss_dssp CEEEEEEECCCSSCCC
T ss_pred cEEEEEEeccCCcccc
Confidence 8899999999988776
No 2
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.92 E-value=1.2e-24 Score=149.21 Aligned_cols=94 Identities=28% Similarity=0.529 Sum_probs=82.9
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCc-CCCCCCCceEEEEcCcccCCCCcccccCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKE-NGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELP 81 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~-i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~ 81 (108)
+...+.|+||+.+|+++. +++++++||++||++|++.||.+|. ..|..+++|||||+||+|+|+.+|++|+|+.++
T Consensus 14 ~~~~m~I~vktl~G~~~~-lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~-- 90 (125)
T 2gow_A 14 PADMINLRLILVSGKTKE-FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK-- 90 (125)
T ss_dssp CTTCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTS--
T ss_pred CCCeEEEEEEeCCCCEEE-EEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC--
Confidence 456799999999999987 9999999999999999999998862 223338999999999999999999999999876
Q ss_pred CcceEEEEEecCCCCCCCCC
Q 033923 82 GTAITMHVVLRPSLPDKKGG 101 (108)
Q Consensus 82 ~~~~tvhlv~~~~~~~~~~~ 101 (108)
.++|||++++.+++++++
T Consensus 91 --~~tlhlv~r~~~~~~~~~ 108 (125)
T 2gow_A 91 --TTVMHLVARETLPEPNSQ 108 (125)
T ss_dssp --EEEEEEEECSCCSSSSSC
T ss_pred --ceEEEEEecCCCCccccc
Confidence 568999999999888765
No 3
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.92 E-value=1.8e-24 Score=146.73 Aligned_cols=95 Identities=27% Similarity=0.531 Sum_probs=82.2
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCc-CCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKE-NGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~-i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~ 82 (108)
++.++|+||+.+|+++. ++|++++||.+||++|++.||.+|. ..|..+++|||||+||+|+|+.+|++|+|+.++
T Consensus 14 ~~~m~I~vKtl~G~t~~-lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~--- 89 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKE-FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK--- 89 (116)
T ss_dssp SSSEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSC---
T ss_pred CCeEEEEEEeCCCCEEE-EEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC---
Confidence 56799999999999988 9999999999999999999998862 112128999999999999999999999998775
Q ss_pred cceEEEEEecCCCCCCCCCCC
Q 033923 83 TAITMHVVLRPSLPDKKGGNT 103 (108)
Q Consensus 83 ~~~tvhlv~~~~~~~~~~~~~ 103 (108)
.++|||++++..+.++++..
T Consensus 90 -~~tlhLvlr~~~~~~~~~~~ 109 (116)
T 1wgh_A 90 -TTVMHLVARETLPEPNSQGQ 109 (116)
T ss_dssp -EEEEEEEECSSCSSSCCSSC
T ss_pred -ceEEEEEccCCCCCCCcccc
Confidence 46899999999888776543
No 4
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.86 E-value=9.1e-22 Score=126.19 Aligned_cols=86 Identities=23% Similarity=0.305 Sum_probs=70.9
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+|+..+|+++. +++++++||.+||++|++..+ +| +++|||+|+|+.|+|+.+|++|+|.+++ +
T Consensus 1 M~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~~~i~~g~------~ 66 (88)
T 4fbj_B 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEG----IP---PQQQRLIYSGKQMNDEKTAADYKILGGS------V 66 (88)
T ss_dssp CEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHHHC----CC---GGGCEEEETTEECCTTSBTTTTTCCTTC------E
T ss_pred CEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHHC----cC---hhHEEEEECCeECCCCCcHHHcCCCCCC------E
Confidence 47899999999998 999999999999999999998 78 8999999999999999999999999997 9
Q ss_pred EEEEecCCCCCCCCCCCCCC
Q 033923 87 MHVVLRPSLPDKKGGNTHNH 106 (108)
Q Consensus 87 vhlv~~~~~~~~~~~~~~~~ 106 (108)
+||+++.+++..-.++-+-|
T Consensus 67 l~l~~rl~Gg~~~~~~~~~~ 86 (88)
T 4fbj_B 67 LHLVLALRGGGGLRQKHHHH 86 (88)
T ss_dssp EEEECBCC------------
T ss_pred EEEEEECCCCCCCCcccccc
Confidence 99999999998777766555
No 5
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.86 E-value=3.6e-21 Score=120.18 Aligned_cols=77 Identities=25% Similarity=0.222 Sum_probs=72.6
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~ 84 (108)
..++|+||..+|+++. +++++++||.+||++|++..+ +| +++|||+|+|+.|+|+.+|++|+|.+++
T Consensus 3 ~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~g----ip---~~~qrL~~~G~~L~d~~tL~~~~i~~~~----- 69 (79)
T 3phx_B 3 EPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGLEG----VQ---DDLFWLTFEGKPLEDQLPLGEYGLKPLS----- 69 (79)
T ss_dssp CCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTSBGGGGTCCTTC-----
T ss_pred CCEEEEEEeCCCCEEE-EEECCcChHHHHHHHHHhhcC----CC---HHHEEEEECCEECCCCCcHHHCCCCCCC-----
Confidence 4689999999999998 999999999999999999998 88 8999999999999999999999999997
Q ss_pred eEEEEEecCCC
Q 033923 85 ITMHVVLRPSL 95 (108)
Q Consensus 85 ~tvhlv~~~~~ 95 (108)
++||+++.++
T Consensus 70 -~l~l~~rl~G 79 (79)
T 3phx_B 70 -TVFMNLRLRG 79 (79)
T ss_dssp -EEEEEECCBC
T ss_pred -EEEEEEecCC
Confidence 9999999764
No 6
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.86 E-value=3.2e-21 Score=123.23 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=73.1
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~ 82 (108)
+...++|+||..+|+++. +++++++||.+||++|++..+ ++ +++|||||+||.|+|+.+|++|+| +++
T Consensus 2 ~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~g----ip---~~~qrLi~~Gk~L~d~~tL~~~~i-~g~--- 69 (90)
T 4dwf_A 2 EPDSLEVLVKTLDSQTRT-FIVGAQMNVKEFKEHIAASVS----IP---SEKQRLIYQGRVLQDDKKLQEYNV-GGK--- 69 (90)
T ss_dssp CCCEEEEEEEETTCCEEE-EEEETTCBHHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTSBGGGGTC-TTE---
T ss_pred CCcEEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHhC----CC---HHHEEEEECCeECCCCCCHHHcCC-CCc---
Confidence 457899999999999998 999999999999999999998 78 899999999999999999999999 676
Q ss_pred cceEEEEEecCCCCCCCC
Q 033923 83 TAITMHVVLRPSLPDKKG 100 (108)
Q Consensus 83 ~~~tvhlv~~~~~~~~~~ 100 (108)
+|||+++.+++....
T Consensus 70 ---~i~l~~~~~~~~~~~ 84 (90)
T 4dwf_A 70 ---VIHLVERAPPQTHLP 84 (90)
T ss_dssp ---EEEEEECCCC-----
T ss_pred ---EEEEEecCCCCCCCC
Confidence 999999987765543
No 7
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.85 E-value=2.7e-21 Score=126.64 Aligned_cols=75 Identities=16% Similarity=0.266 Sum_probs=69.4
Q ss_pred CCCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCC
Q 033923 2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELP 81 (108)
Q Consensus 2 ~~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~ 81 (108)
++++.++|+|+...|+++. ++++|++||++||++|+++.| +| +++|||||+||+|+|+.+|++|+|++|+
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~~-v~v~p~DTI~~LK~~I~~k~G----ip---~~qQrLif~Gk~LkD~~TL~dY~I~dgs-- 86 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKVR-VKCLGEDSVGDFKKVLSLQIG----TQ---PNKIVLQKGGSVLKDHISLEDYEVHDQT-- 86 (93)
T ss_dssp ---CEEEEEEECTTSCEEE-EEEETTSBHHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTSBTGGGTCCTTC--
T ss_pred CCCceEEEEEECCCCCEEE-EEECCcCHHHHHHHHHHHHhC----CC---HHHEEEEeCCEEccCcCCHHHcCCCCCC--
Confidence 4678999999999999998 999999999999999999999 88 9999999999999999999999999997
Q ss_pred CcceEEEEE
Q 033923 82 GTAITMHVV 90 (108)
Q Consensus 82 ~~~~tvhlv 90 (108)
++||.
T Consensus 87 ----tLhL~ 91 (93)
T 3plu_A 87 ----NLELY 91 (93)
T ss_dssp ----EEEEE
T ss_pred ----EEEEE
Confidence 99985
No 8
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=6.5e-21 Score=123.02 Aligned_cols=85 Identities=18% Similarity=0.239 Sum_probs=74.6
Q ss_pred CCceEEEEEEeCCCC--eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCccccc--CCCCC
Q 033923 3 GEDLIELKFRLADGA--DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAES--RLPVV 78 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~--~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~--~i~~~ 78 (108)
+...++|+||..+|. ++. +++++++||.+||++|++.++.. ++ +++|||||+||.|+|+.+|++| +|.++
T Consensus 4 ~~~~m~i~Vk~~~~~~~~~~-v~v~~~~TV~~lK~~I~~~~~~~--i~---~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~ 77 (93)
T 1wgd_A 4 GSSGVTLLVKSPNQRHRDLE-LSGDRGWSVGHLKAHLSRVYPER--PR---PEDQRLIYSGKLLLDHQCLRDLLPKQEKR 77 (93)
T ss_dssp CSCCCEEEEECSSSSCCCEE-EECCTTSCHHHHHHHHHHHSTTC--CC---TTTCEEEETTEECCSSSCHHHHSCSSSCS
T ss_pred CCcEEEEEEEeCCCCeEEEE-EecCCCCcHHHHHHHHHHHhcCC--CC---hHHeEEEECCEECcCcCCHHHHhcCCCCC
Confidence 456799999999988 666 78889999999999999998211 67 8999999999999999999999 99988
Q ss_pred CCCCcceEEEEEecCCCCCCC
Q 033923 79 ELPGTAITMHVVLRPSLPDKK 99 (108)
Q Consensus 79 ~~~~~~~tvhlv~~~~~~~~~ 99 (108)
+ +|||+++++++++.
T Consensus 78 ~------~i~lv~~~~gg~~~ 92 (93)
T 1wgd_A 78 H------VLHLVCNVKSGPSS 92 (93)
T ss_dssp E------EEEEECCCCCCCCC
T ss_pred C------EEEEEeCCCCCCCC
Confidence 6 99999999988664
No 9
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=2.9e-20 Score=118.40 Aligned_cols=83 Identities=19% Similarity=0.310 Sum_probs=76.5
Q ss_pred CCceEEEEEEeCCC-Ceeeee-EeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCC
Q 033923 3 GEDLIELKFRLADG-ADIGPS-KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL 80 (108)
Q Consensus 3 ~~~~i~i~~r~~~g-~~~~~l-~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~ 80 (108)
+...++|+||..+| +++. + ++++++||.+||++|++..+ ++ +++|||+|+|+.|+|+.+|++|+|.+++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~-l~~v~~~~tV~~lK~~i~~~~g----ip---~~~qrL~~~gk~L~d~~tL~~~~i~~g~- 74 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCT-IEDVSRKATIEELRERVWALFD----VR---PECQRLFYRGKQLENGYTLFDYDVGLND- 74 (89)
T ss_dssp CSSCEEEEEEETTCSCEEE-EEEECTTCBHHHHHHHHHHHSC----CC---TTTEEEEETTEECCSSSBHHHHTCCTTC-
T ss_pred CCCcEEEEEEECCCCceEE-EEecCCCCCHHHHHHHHHHHHC----cC---hhhEEEEECCeECCCCCCHHHCCCCCCC-
Confidence 56789999999999 6887 9 59999999999999999998 78 9999999999999999999999999997
Q ss_pred CCcceEEEEEecCCCCCCC
Q 033923 81 PGTAITMHVVLRPSLPDKK 99 (108)
Q Consensus 81 ~~~~~tvhlv~~~~~~~~~ 99 (108)
+|||++++.++.+.
T Consensus 75 -----~i~l~~~~~gG~~~ 88 (89)
T 1wy8_A 75 -----IIQLLVRPDSGPSS 88 (89)
T ss_dssp -----EEEEEECCCCSSCC
T ss_pred -----EEEEEEeCCCCCCC
Confidence 99999999987654
No 10
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.84 E-value=1.2e-20 Score=119.52 Aligned_cols=80 Identities=24% Similarity=0.304 Sum_probs=75.0
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~ 82 (108)
++..++|+|+..+|+++. +++++++||.+||++|++..+ ++ +++|||+|+|+.|+|+.+|++|+|.+++
T Consensus 9 ~~~~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~g----ip---~~~qrL~~~G~~L~d~~tL~~~~i~~~~--- 77 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEG----IP---PQQQRLIYSGKQMNDEKTAADYKILGGS--- 77 (88)
T ss_dssp CCCCEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGCCEEETTEECCTTSBGGGGTCCTTC---
T ss_pred CCCcEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHHC----cC---HHHEEEEECCeECCCCCcHHHcCCCCCC---
Confidence 456799999999999998 999999999999999999998 78 8999999999999999999999999997
Q ss_pred cceEEEEEecCCCC
Q 033923 83 TAITMHVVLRPSLP 96 (108)
Q Consensus 83 ~~~tvhlv~~~~~~ 96 (108)
++||+++.+++
T Consensus 78 ---~i~l~~rl~GG 88 (88)
T 3dbh_I 78 ---VLHLVLRLRGG 88 (88)
T ss_dssp ---EEEECCCCCCC
T ss_pred ---EEEEEEeCCCC
Confidence 99999998774
No 11
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.6e-20 Score=122.52 Aligned_cols=80 Identities=25% Similarity=0.307 Sum_probs=73.2
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~ 82 (108)
++..++|+||..+|+++. +++++++||.+||++|++..+ ++ +++|||+|+||.|+|+.+|++|+|.+++
T Consensus 19 ~~~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~~~i~~g~--- 87 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES--- 87 (98)
T ss_dssp ---CCEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHHHC----CC---GGGCEEEETTEECCTTCBSGGGTCCTTE---
T ss_pred CCCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHhC----CC---hhHEEEEECCEECCCCCcHHHCCCCCCC---
Confidence 467799999999999998 999999999999999999998 78 8999999999999999999999999997
Q ss_pred cceEEEEEecCCCC
Q 033923 83 TAITMHVVLRPSLP 96 (108)
Q Consensus 83 ~~~tvhlv~~~~~~ 96 (108)
+|||+++.+++
T Consensus 88 ---~i~l~~rl~GG 98 (98)
T 4hcn_B 88 ---TLHLVLRLRGG 98 (98)
T ss_dssp ---EEEEECBCSCC
T ss_pred ---EEEEEEecCCC
Confidence 99999998874
No 12
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.83 E-value=3.4e-20 Score=119.05 Aligned_cols=78 Identities=27% Similarity=0.372 Sum_probs=73.1
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~ 82 (108)
.+..++|+|+..+|+++. +++++++||.+||++|++..+ ++ +++|||+|+|+.|+|+.+|++|+|.+|+
T Consensus 14 ~~~~m~i~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~qrL~~~Gk~L~D~~tL~~~gi~~g~--- 82 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES--- 82 (91)
T ss_dssp CCCSEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGCEEEETTEECCTTCBTGGGTCCTTC---
T ss_pred CCCeEEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHhhhC----CC---hhhEEEEECCeECCCcCcHHHCCCCCCC---
Confidence 467899999999999998 999999999999999999998 88 8999999999999999999999999997
Q ss_pred cceEEEEEecCC
Q 033923 83 TAITMHVVLRPS 94 (108)
Q Consensus 83 ~~~tvhlv~~~~ 94 (108)
++||+++.+
T Consensus 83 ---~i~l~~rlr 91 (91)
T 3v6c_B 83 ---TLHLVLRLR 91 (91)
T ss_dssp ---EEEEECCCC
T ss_pred ---EEEEEEecC
Confidence 999999864
No 13
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=118.62 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=69.4
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~ 82 (108)
+...++|+||..+|+++. +++++++||.+||++|++..+ +| +++|||||+||.|+|+.+|++|+| +|+
T Consensus 14 ~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~~~i-~g~--- 81 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRT-FIVGAQMNVKEFKEHIAASVS----IP---SEKQRLIYQGRVLQDDKKLQEYNV-GGK--- 81 (88)
T ss_dssp -CCEEEEEEEETTSCEEE-EEEETTCBHHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTSBGGGGTC-TTE---
T ss_pred CCCeEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHhC----CC---HHHEEEEECCEECCCCCcHHHcCC-CCc---
Confidence 456799999999999998 999999999999999999998 78 899999999999999999999999 676
Q ss_pred cceEEEEEec
Q 033923 83 TAITMHVVLR 92 (108)
Q Consensus 83 ~~~tvhlv~~ 92 (108)
++||+.|
T Consensus 82 ---~i~lv~R 88 (88)
T 4eew_A 82 ---VIHLVER 88 (88)
T ss_dssp ---EEEEEEC
T ss_pred ---EEEEEEC
Confidence 9999986
No 14
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=4.2e-20 Score=115.94 Aligned_cols=80 Identities=24% Similarity=0.311 Sum_probs=73.6
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~ 84 (108)
..++|+|+..+|+++. +++++++||.+||++|++..+ ++ +++|||+|+|+.|+|+.+|++|+|.+++
T Consensus 2 s~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~~----i~---~~~qrL~~~g~~L~d~~tL~~~~i~~~~----- 68 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKWS----- 68 (85)
T ss_dssp -CEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGCEEEETTEECCTTSBTGGGTCCTTC-----
T ss_pred CeEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHHC----cC---hHHEEEEECCEECCCCCCHHHcCCCCCC-----
Confidence 5689999999999998 999999999999999999998 78 8999999999999999999999999997
Q ss_pred eEEEEEecCCCCCC
Q 033923 85 ITMHVVLRPSLPDK 98 (108)
Q Consensus 85 ~tvhlv~~~~~~~~ 98 (108)
++||+++.+++.-
T Consensus 69 -~l~l~~r~~GG~g 81 (85)
T 3mtn_B 69 -TLFLLLRLRGGGG 81 (85)
T ss_dssp -EEEEECCCCCC--
T ss_pred -EEEEEEECcCCCC
Confidence 9999999988753
No 15
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.83 E-value=1.3e-20 Score=124.94 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=71.1
Q ss_pred CCCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCC
Q 033923 2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELP 81 (108)
Q Consensus 2 ~~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~ 81 (108)
.++++++|+|+...|+++. +++++++||++||++|+++.+ ++ +++|||||+||+|+|+.+|++|+|.+++
T Consensus 24 ~~~~mm~I~VKtl~Gk~i~-lev~p~dTV~~lK~~Ia~k~G----ip---~~qQrLi~~Gk~L~D~~TL~dygI~~gs-- 93 (100)
T 1uh6_A 24 GAATMIEVVCNDRLGKKVR-VKCNTDDTIGDLKKLIAAQTG----TR---WNKIVLKKWYTIFKDHVSLGDYEIHDGM-- 93 (100)
T ss_dssp SCCCEEEEEEECSSSSCEE-EEEETTSBHHHHHHHHHHHHC----CC---GGGCEEEETTEECCSSCBHHHHTCCTTE--
T ss_pred CCCCeEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHHhC----CC---HHHEEEEECCEECCCCCCHHHcCCCCCC--
Confidence 3567899999999999998 999999999999999999999 88 9999999999999999999999999986
Q ss_pred CcceEEEEEe
Q 033923 82 GTAITMHVVL 91 (108)
Q Consensus 82 ~~~~tvhlv~ 91 (108)
+|||+-
T Consensus 94 ----tlhL~~ 99 (100)
T 1uh6_A 94 ----NLELYY 99 (100)
T ss_dssp ----EEEEEC
T ss_pred ----EEEEEe
Confidence 899974
No 16
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.83 E-value=5.6e-20 Score=119.62 Aligned_cols=81 Identities=22% Similarity=0.245 Sum_probs=74.4
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCC-CcccccCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDN-MTIAESRLPVVELP 81 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~-~tL~~~~i~~~~~~ 81 (108)
--..++|+||...| ++. +++++++||.+||++|++..+ +| +++|||+|+||.|+|+ .+|++|+|.+++
T Consensus 12 ~~~~~~I~Vk~~~~-~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~QrLi~~Gk~L~D~~~tL~~ygI~~gs-- 80 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFT-VEVDRTETVSSLKDKIHIVEN----TP---IKRMQLYYSGIELADDYRNLNEYGITEFS-- 80 (94)
T ss_dssp SSCCEEEEEECSSC-EEE-EEECTTCBHHHHHHHHHHHSS----SC---TTTEEEEETTEEECCTTSBHHHHTCCTTE--
T ss_pred CCCCEEEEEEcCCc-EEE-EEECCCCcHHHHHHHHHHHHC----cC---HHHEEEEECCEECCCCcccHHHCCCCCCC--
Confidence 34578999999888 777 999999999999999999998 88 9999999999999999 999999999986
Q ss_pred CcceEEEEEecCCCCCC
Q 033923 82 GTAITMHVVLRPSLPDK 98 (108)
Q Consensus 82 ~~~~tvhlv~~~~~~~~ 98 (108)
+|||+++++++++
T Consensus 81 ----tl~lv~r~~gg~~ 93 (94)
T 2kan_A 81 ----EIVVFLKSINRAK 93 (94)
T ss_dssp ----EEEEEECCCSSCC
T ss_pred ----EEEEEEeCCCCCC
Confidence 9999999988765
No 17
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=6.5e-20 Score=116.17 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=75.8
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~ 82 (108)
+...++|+|+..+|+++. +++++++||.+||++|++..+ ++ +++|||+|+|+.|+|+.+|++|+|.+++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~g----i~---~~~qrL~~~Gk~L~d~~tL~~~~i~~g~--- 72 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYA-YAINPNSFILGLKQQIEDQQG----LP---KKQQQLEFQGQVLQDWLGLGIYGIQDSD--- 72 (87)
T ss_dssp CSSSEEEEEEETTTEEEE-EEECSSSBHHHHHHHHHHHTC----CC---TTTEEEEETTEECCSSSBHHHHTCCTTE---
T ss_pred CCCCEEEEEEcCCCCEEE-EEeCCCChHHHHHHHHHHHhC----CC---hHHEEEEECCEEccCCCCHHHCCCCCCC---
Confidence 457899999999999988 999999999999999999998 78 9999999999999999999999999886
Q ss_pred cceEEEEEecCCCCC
Q 033923 83 TAITMHVVLRPSLPD 97 (108)
Q Consensus 83 ~~~tvhlv~~~~~~~ 97 (108)
++||+++..++.
T Consensus 73 ---~i~l~~~~~GG~ 84 (87)
T 1wh3_A 73 ---TLILSKKKGSGP 84 (87)
T ss_dssp ---EEEEEECSCCCS
T ss_pred ---EEEEEEeccCCC
Confidence 999999998874
No 18
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.82 E-value=2.3e-20 Score=116.52 Aligned_cols=78 Identities=24% Similarity=0.260 Sum_probs=72.8
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~ 84 (108)
+.++|+|+..+|+++. +++++++||.+||++|++..+ ++ +++|||+|+|+.|+|+.+|++|+|.+++
T Consensus 2 ~~m~i~vk~~~g~~~~-~~v~~~~tv~~lk~~i~~~~g----i~---~~~qrL~~~G~~L~d~~tl~~~~i~~~~----- 68 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQRQG----VP---MNSLRFLFEGQRIADNHTPKELGMEEED----- 68 (79)
T ss_dssp CEEEEEEECTTCCEEE-EEEETTSCTHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTCCHHHHTCCTTE-----
T ss_pred CeEEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHHC----CC---cccEEEEECCEEeCCCCCHHHcCCCCCC-----
Confidence 4689999999999998 999999999999999999998 78 8999999999999999999999999997
Q ss_pred eEEEEEecCCCC
Q 033923 85 ITMHVVLRPSLP 96 (108)
Q Consensus 85 ~tvhlv~~~~~~ 96 (108)
++||+++..++
T Consensus 69 -~i~l~~~~~GG 79 (79)
T 2uyz_B 69 -VIEVYQEQTGG 79 (79)
T ss_dssp -EEEEEECCCC-
T ss_pred -EEEEEEeccCC
Confidence 99999998764
No 19
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.82 E-value=4.9e-20 Score=118.78 Aligned_cols=80 Identities=26% Similarity=0.337 Sum_probs=71.8
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+|+..+|+++. +++++++||.+||++|++..+ ++ ++.|||+|+|+.|+|+.+|++|+|.+++ +
T Consensus 2 m~i~vk~~~g~~~~-~~v~~~~TV~~LK~~i~~~~g----ip---~~~qrL~~~G~~L~d~~tL~~~~i~~~~------~ 67 (96)
T 3k9o_B 2 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 67 (96)
T ss_dssp CEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTSBTGGGTCCTTC------E
T ss_pred cEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHhhhC----CC---hhHEEEEECCEECCCCCcHHHcCCCCCC------E
Confidence 68999999999998 999999999999999999998 88 8999999999999999999999999997 9
Q ss_pred EEEEecCCCCCCCC
Q 033923 87 MHVVLRPSLPDKKG 100 (108)
Q Consensus 87 vhlv~~~~~~~~~~ 100 (108)
|||+++.+++.+..
T Consensus 68 i~l~~r~~gG~~~~ 81 (96)
T 3k9o_B 68 LHLVLRLRGYADLR 81 (96)
T ss_dssp EEEEECCCC-----
T ss_pred EEEEEEcCCCCccc
Confidence 99999998886543
No 20
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=2.7e-20 Score=117.02 Aligned_cols=81 Identities=21% Similarity=0.249 Sum_probs=71.2
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~ 84 (108)
..++|+|+..+|+++. +++++++||.+||++|++.++ +| +++|||+|+|+.|+|+.+|++|+|.+++
T Consensus 2 s~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~~----ip---~~~qrL~~~g~~L~d~~tL~~~~i~~~~----- 68 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTII-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIHNHS----- 68 (85)
T ss_dssp --CEEEEECGGGCEEE-EECCTTCBHHHHHHHHHHHHC----CC---GGGEEEEETBEECCTTCBTTTTTCCTTC-----
T ss_pred CeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHC----CC---HHHEEEEECCeECCCCCCHHHCCCCCCC-----
Confidence 4689999999999998 999999999999999999998 88 8999999999999999999999999997
Q ss_pred eEEEEEecCCCCCCC
Q 033923 85 ITMHVVLRPSLPDKK 99 (108)
Q Consensus 85 ~tvhlv~~~~~~~~~ 99 (108)
++||+++.+++.-.
T Consensus 69 -~i~l~~rl~GG~g~ 82 (85)
T 3n3k_B 69 -ALYLLLKLRGGGGG 82 (85)
T ss_dssp -EEEEEECCC-----
T ss_pred -EEEEEEeccCCCCC
Confidence 99999999887544
No 21
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.82 E-value=3.9e-20 Score=118.42 Aligned_cols=80 Identities=24% Similarity=0.196 Sum_probs=70.4
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~ 84 (108)
..++|+||..+|+++. +++++++||.+||++|++..+ +| +++|||+|+|+.|+|+.+|++|+|.+++
T Consensus 3 ~~m~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~~g----ip---~~~qrL~~~Gk~L~D~~tL~~~~I~~g~----- 69 (88)
T 2hj8_A 3 EPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGLEG----VQ---DDLFWLTFEGKPLEDQLPLGEYGLKPLS----- 69 (88)
T ss_dssp CEEEEEEEETTSCEEE-EEEESSSBHHHHHHHHHHHTC----SC---TTTEEEESSSSCCCTTSBHHHHHCSTTC-----
T ss_pred ccEEEEEECCCCCEEE-EEECCCCcHHHHHHHHHHHhC----CC---hhHEEEEECCEECCCCCcHHHcCCCCCC-----
Confidence 3689999999999987 999999999999999999998 88 9999999999999999999999999997
Q ss_pred eEEEEEecCCCCCC
Q 033923 85 ITMHVVLRPSLPDK 98 (108)
Q Consensus 85 ~tvhlv~~~~~~~~ 98 (108)
++||+.+..+++.
T Consensus 70 -~i~l~~~~~gg~~ 82 (88)
T 2hj8_A 70 -TVFMNLRLRGGLE 82 (88)
T ss_dssp -EEEEEEC------
T ss_pred -EEEEEEEcCCCcc
Confidence 9999999887653
No 22
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=3e-20 Score=123.16 Aligned_cols=76 Identities=20% Similarity=0.332 Sum_probs=69.0
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+||..+|+++. +++++++||.+||++|+..++ ++ +++|||||+||.|+|+.+|++|+|.+|+ +
T Consensus 2 m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~~~~i~~g~------~ 67 (106)
T 3m62_B 2 VSLTFKNFKKEKVP-LDLEPSNTILETKTKLAQSIS----CE---ESQIKLIYSGKVLQDSKTVSECGLKDGD------Q 67 (106)
T ss_dssp -CEEEECTTCCEEE-ECCCTTSBHHHHHHHHHHTTT----SC---GGGCEEEETTEECCTTSBTTTTTCCTTC------E
T ss_pred EEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHC----CC---hhhEEEEECCEECCCcCCHHHcCCCCCC------E
Confidence 68999999999998 999999999999999999998 88 8999999999999999999999999997 9
Q ss_pred EEEEecCCCC
Q 033923 87 MHVVLRPSLP 96 (108)
Q Consensus 87 vhlv~~~~~~ 96 (108)
|||+++....
T Consensus 68 i~lv~~~~~~ 77 (106)
T 3m62_B 68 VVFMVSQKKS 77 (106)
T ss_dssp EEEECCC---
T ss_pred EEEEEcCCCC
Confidence 9999986543
No 23
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.82 E-value=3.3e-20 Score=118.46 Aligned_cols=75 Identities=15% Similarity=0.238 Sum_probs=70.6
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcc-cCCCCcccccCCCCCCCCCc
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKI-LEDNMTIAESRLPVVELPGT 83 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~-L~D~~tL~~~~i~~~~~~~~ 83 (108)
.-+.|+++...|+++. +++++++||++||++|++..+ +| +++|||||+||. |+|+.+|++|+|.+++
T Consensus 9 ~~~~i~vk~l~g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs---- 76 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFE-LEVDYRDTLLVVKQKIERSQH----IP---VSKQTLIVDGIVILREDLTVEQCQIVPTS---- 76 (84)
T ss_dssp CCEEEEEEETTSCEEE-EEECTTSBHHHHHHHHHHHHT----CC---GGGEEEEETTEECCCSSSBHHHHTCCTTS----
T ss_pred CceEEEEEecCCcEEE-EEECCCChHHHHHHHHHHHHC----cC---hHHEEEEECCEEecCCcCCHHHcCCCCCC----
Confidence 3578999999999998 999999999999999999999 88 999999999999 9999999999999997
Q ss_pred ceEEEEEecC
Q 033923 84 AITMHVVLRP 93 (108)
Q Consensus 84 ~~tvhlv~~~ 93 (108)
++||+++|
T Consensus 77 --~i~lv~~p 84 (84)
T 2kk8_A 77 --DIQLEVSS 84 (84)
T ss_dssp --CEEEEECC
T ss_pred --EEEEEEcC
Confidence 89999876
No 24
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=2e-20 Score=120.82 Aligned_cols=76 Identities=21% Similarity=0.513 Sum_probs=68.1
Q ss_pred EEEEEEeCCCCeeeeeEe--CCcchHHHHHHHH-HhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCC-CCCCCCC
Q 033923 7 IELKFRLADGADIGPSKF--SPTTTVASLKEKI-ISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL-PVVELPG 82 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v--~~~~TV~~LK~~I-~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i-~~~~~~~ 82 (108)
++|+||..+|+++. +++ ++++||.+||++| ++..+ +| +++|||||+||+|+|+.+|++|+| +++.
T Consensus 2 mqI~VKtl~g~~~~-i~v~v~~~~TV~~lK~~I~~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~~y~I~~~~s--- 70 (87)
T 2lxa_A 2 VHLTLKKIQAPKFS-IEHDFSPSDTILQIKQHLISEEKA----SH---ISEIKLLLKGKVLHDNLFLSDLKVTPANS--- 70 (87)
T ss_dssp CEEEEEECSSSCEE-CCEECCTTCBHHHHHHHHHHTTSC----SS---STTEEEEETTEECCTTCBHHHHCCCGGGC---
T ss_pred EEEEEEcCCCCEEE-EEEcCCCCCcHHHHHHHHHHHhcC----CC---hHHEEEEECCEECcCcCCHHHcCCCCCCC---
Confidence 78999999999887 764 4999999999999 77777 78 999999999999999999999999 5776
Q ss_pred cceEEEEEecCCCC
Q 033923 83 TAITMHVVLRPSLP 96 (108)
Q Consensus 83 ~~~tvhlv~~~~~~ 96 (108)
++||+.+|...
T Consensus 71 ---tl~v~~~~~~~ 81 (87)
T 2lxa_A 71 ---TITVMIKPNLE 81 (87)
T ss_dssp ---EEEEEECCCCC
T ss_pred ---EEEEEcCCCcc
Confidence 99999998754
No 25
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.82 E-value=6.7e-20 Score=112.51 Aligned_cols=76 Identities=24% Similarity=0.307 Sum_probs=70.0
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+|+..+|+++. +++++++||++||++|++..+ ++ ++.|||+|+|+.|+|+.+|++|+|.+++ +
T Consensus 1 M~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~~~----i~---~~~q~L~~~g~~L~d~~tL~~~~i~~g~------~ 66 (76)
T 1ndd_A 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEG----IP---PQQQRLIYSGKQMNDEKTAADYKILGGS------V 66 (76)
T ss_dssp CEEEEECTTSCEEE-EECCTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTSBGGGGTCCTTC------E
T ss_pred CEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHHC----cC---hHHEEEEECCEECCCCCcHHHcCCCCCC------E
Confidence 47899999999988 999999999999999999998 78 8999999999999999999999999997 9
Q ss_pred EEEEecCCCC
Q 033923 87 MHVVLRPSLP 96 (108)
Q Consensus 87 vhlv~~~~~~ 96 (108)
+|++++.+++
T Consensus 67 i~l~~~~~GG 76 (76)
T 1ndd_A 67 LHLVLALRGG 76 (76)
T ss_dssp EEEEECCC--
T ss_pred EEEEEeCCCC
Confidence 9999998764
No 26
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=7.1e-20 Score=121.33 Aligned_cols=82 Identities=15% Similarity=0.081 Sum_probs=70.9
Q ss_pred CCceEEEEEEeCC----CCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCC
Q 033923 3 GEDLIELKFRLAD----GADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVV 78 (108)
Q Consensus 3 ~~~~i~i~~r~~~----g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~ 78 (108)
++....|.|++.+ ++.+. +++++++||.+||++|++..+ +| +++|||||+||+|+|+.||++|+|+++
T Consensus 12 ~tg~ati~V~~~~~~~~~~~~~-lev~~~~TV~~lK~kI~~k~g----ip---~~qQrLI~~GKiL~D~~TL~~y~I~~g 83 (100)
T 1wju_A 12 TTGIATIEVFLPPRLKKDRKNL-LETRLHITGRELRSKIAETFG----LQ---ENYIKIVINKKQLQLGKTLEEQGVAHN 83 (100)
T ss_dssp CCCEEEEEEECCTTTCCSSSEE-EEEESSSBHHHHHHHHHHHTT----CC---STTCEEEETTEECCTTSBHHHHTCCSS
T ss_pred hcceEEEEEEecCCCCCCcEEE-EEeCCcCHHHHHHHHHHHHHC----cC---HHHeEEEeCCeECCCCCcHHHcCCCCC
Confidence 4556778888887 77887 999999999999999999999 88 999999999999999999999999999
Q ss_pred CCCCcceEEEEEecCCCCCCC
Q 033923 79 ELPGTAITMHVVLRPSLPDKK 99 (108)
Q Consensus 79 ~~~~~~~tvhlv~~~~~~~~~ 99 (108)
+ +| ++++.++....
T Consensus 84 s------ti-~vl~lrg~~~~ 97 (100)
T 1wju_A 84 V------KA-MVLELKQSSGP 97 (100)
T ss_dssp E------EE-EEECCCCCCCS
T ss_pred C------EE-EEEEECCCCcc
Confidence 6 78 66666665443
No 27
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=8e-20 Score=113.62 Aligned_cols=75 Identities=24% Similarity=0.323 Sum_probs=70.1
Q ss_pred eEEEEEEeCCCCee-eeeE-eCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923 6 LIELKFRLADGADI-GPSK-FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (108)
Q Consensus 6 ~i~i~~r~~~g~~~-~~l~-v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~ 83 (108)
.++|+|+..+|+++ . ++ +++++||.+||++|++..+ ++ +++|||+|+|+.|+|+.+|++|+|.+++
T Consensus 2 ~m~i~Vk~~~g~~~~~-l~~v~~~~tv~~lK~~i~~~~g----ip---~~~qrL~~~g~~L~d~~tL~~~~i~~g~---- 69 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHT-VDSLSRLTKVEELRRKIQELFH----VE---PGLQRLFYRGKQMEDGHTLFDYEVRLND---- 69 (78)
T ss_dssp CEEEEEEETTSSCEEE-EEEECTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTCBTTTTTCCTTC----
T ss_pred cEEEEEEECCCCEEEE-EeccCCCCCHHHHHHHHHHHHC----cC---hhhEEEEECCEECCCCCCHHHcCCCCCC----
Confidence 58999999999986 6 99 9999999999999999998 88 9999999999999999999999999997
Q ss_pred ceEEEEEecCC
Q 033923 84 AITMHVVLRPS 94 (108)
Q Consensus 84 ~~tvhlv~~~~ 94 (108)
++||+++++
T Consensus 70 --~i~l~~r~~ 78 (78)
T 2faz_A 70 --TIQLLVRQS 78 (78)
T ss_dssp --EEEEEECCC
T ss_pred --EEEEEEeCC
Confidence 999999864
No 28
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=8.4e-20 Score=113.80 Aligned_cols=78 Identities=18% Similarity=0.337 Sum_probs=72.5
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~ 82 (108)
+...++|+|+..+|+++. +++++++||++||++|++..+ ++ ++.|||+|+||.|+|+.+|++|+|.+|+
T Consensus 4 ~~~~m~i~vk~~~g~~~~-~~v~~~~tV~~LK~~i~~~~~----i~---~~~qrL~~~gk~L~d~~tL~~~~i~~g~--- 72 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRECS-LQVPEDELVSTLKQLVSEKLN----VP---VRQQRLLFKGKALADGKRLSDYSIGPNS--- 72 (81)
T ss_dssp SSSSEEEEEEETTSCEEE-EEECSSCBHHHHHHHHHHHTC----CC---TTTCEEEETTEECCTTSBGGGGTCCSSB---
T ss_pred CCCcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHC----cC---HHHEEEEECCeECCCCCcHHHcCCCCCC---
Confidence 567899999999999887 999999999999999999998 78 8999999999999999999999999997
Q ss_pred cceEEEEEecCC
Q 033923 83 TAITMHVVLRPS 94 (108)
Q Consensus 83 ~~~tvhlv~~~~ 94 (108)
++|++++++
T Consensus 73 ---~i~l~~~~~ 81 (81)
T 2dzi_A 73 ---KLNLVVKPL 81 (81)
T ss_dssp ---CCEEECCCC
T ss_pred ---EEEEEEeCC
Confidence 899998863
No 29
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.82 E-value=4.5e-20 Score=120.37 Aligned_cols=79 Identities=24% Similarity=0.254 Sum_probs=74.2
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~ 83 (108)
...++|+|+..+|+++. +++++++||.+||++|++..+ ++ +++|||||+|+.|+|+.+|++|+|.+++
T Consensus 19 ~~~m~I~Vk~~~g~~~~-l~v~~~~tv~~lK~~i~~~~g----ip---~~~qrLif~Gk~L~d~~tl~dy~i~~g~---- 86 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQRQG----VP---MNSLRFLFEGQRIADNHTPKELGMEEED---- 86 (97)
T ss_dssp CCEEEEEEECTTCCEEE-EEEETTSCTHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTCCHHHHTCCTTC----
T ss_pred CCcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHC----CC---hhhEEEEECCeEcCCCCCHHHCCCCCCC----
Confidence 34699999999999998 999999999999999999999 88 8999999999999999999999999998
Q ss_pred ceEEEEEecCCCC
Q 033923 84 AITMHVVLRPSLP 96 (108)
Q Consensus 84 ~~tvhlv~~~~~~ 96 (108)
+|||+++.+++
T Consensus 87 --~I~l~~~~~GG 97 (97)
T 1wyw_B 87 --VIEVYQEQTGG 97 (97)
T ss_dssp --EEEEEESSSCC
T ss_pred --EEEEEEecCCC
Confidence 99999998764
No 30
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=2.3e-19 Score=116.34 Aligned_cols=79 Identities=25% Similarity=0.310 Sum_probs=71.2
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhh---CCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISR---WPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~---~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~ 83 (108)
++|+||..+|+.+. +++++++||.+||++|+.. .+ ++ +++|||||+||.|+|+.+|++|+|.+++
T Consensus 1 M~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~ygI~~g~---- 68 (95)
T 1uel_A 1 MQVTLKTLQQQTFK-IDIDPEETVKALKEKIESEKGKDA----FP---VAGQKLIYAGKILNDDTALKEYKIDEKN---- 68 (95)
T ss_dssp CEEEEEETTCCEEE-EECCTTSBHHHHHHHHHHHHCTTT----CC---TTTEEEEETTEECCTTSBGGGGTCCSSS----
T ss_pred CEEEEEeCCCCEEE-EEECCCCHHHHHHHHHHhhcccCC----CC---hhhEEEEECCEECCCcCcHHHCCCCCCC----
Confidence 47899999999998 9999999999999999998 55 77 8999999999999999999999999997
Q ss_pred ceEEEEEecCCCCCCC
Q 033923 84 AITMHVVLRPSLPDKK 99 (108)
Q Consensus 84 ~~tvhlv~~~~~~~~~ 99 (108)
++||+++...+.+.
T Consensus 69 --~i~l~~~~~~~~~~ 82 (95)
T 1uel_A 69 --FVVVMVTKPKAVST 82 (95)
T ss_dssp --EEEEEESSCCCCCC
T ss_pred --EEEEEEeCCCCCCC
Confidence 99999987555444
No 31
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.82 E-value=1.2e-19 Score=111.31 Aligned_cols=76 Identities=28% Similarity=0.373 Sum_probs=71.2
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+|+..+|+++. +++++++||++||++|++..+ ++ +++|||+|+|+.|+|+.+|++|++.+++ +
T Consensus 1 M~i~vk~~~g~~~~-i~v~~~~tv~~lK~~i~~~~~----i~---~~~q~L~~~g~~L~d~~tL~~~~i~~g~------~ 66 (76)
T 3a9j_A 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQRES------T 66 (76)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTCBTGGGTCCTTC------E
T ss_pred CEEEEEcCCCCEEE-EEECCCCcHHHHHHHHHHHHC----cC---HHHeEEEECCeECCCCCcHHHcCCCCCC------E
Confidence 47899999999987 999999999999999999998 78 8999999999999999999999999997 9
Q ss_pred EEEEecCCCC
Q 033923 87 MHVVLRPSLP 96 (108)
Q Consensus 87 vhlv~~~~~~ 96 (108)
+|++++..++
T Consensus 67 i~l~~~~~GG 76 (76)
T 3a9j_A 67 LHLVLRLRGG 76 (76)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEeCCCC
Confidence 9999998774
No 32
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.82 E-value=1.8e-19 Score=113.50 Aligned_cols=77 Identities=26% Similarity=0.325 Sum_probs=69.1
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhh---CCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCC
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISR---WPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELP 81 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~---~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~ 81 (108)
..++|+|+..+|+++. +++++++||.+||++|++. .+ ++ +++|||+|+|+.|+|+.+|++|+|.+++
T Consensus 4 ~~m~i~vk~~~g~~~~-~~v~~~~TV~~lK~~i~~~~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~~~i~~g~-- 73 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFK-IRMEPDETVKVLKEKIEAEKGRDA----FP---VAGQKLIYAGKILSDDVPIRDYRIDEKN-- 73 (85)
T ss_dssp CCEEEEEEETTSCEEE-EEECTTSBHHHHHHHHHHHHCTTT----CC---GGGEEEEETTEECCTTSBGGGGCCCTTS--
T ss_pred ceEEEEEEECCCCEEE-EEECCCCCHHHHHHHHHhhccccC----CC---HHHeEEEECCEECcCCCCHHHcCCCCCC--
Confidence 4689999999999998 9999999999999999998 55 77 8999999999999999999999999997
Q ss_pred CcceEEEEEecCCC
Q 033923 82 GTAITMHVVLRPSL 95 (108)
Q Consensus 82 ~~~~tvhlv~~~~~ 95 (108)
++||+.++..
T Consensus 74 ----~i~l~~~~~~ 83 (85)
T 2wyq_A 74 ----FVVVMVTKTK 83 (85)
T ss_dssp ----EEEEEEC---
T ss_pred ----EEEEEEcCCC
Confidence 9999998653
No 33
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.81 E-value=1.5e-19 Score=119.00 Aligned_cols=78 Identities=21% Similarity=0.510 Sum_probs=67.9
Q ss_pred CCceEEEEEEeCCCCeeeee--EeCCcchHHHHHHHH-HhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCC-CCC
Q 033923 3 GEDLIELKFRLADGADIGPS--KFSPTTTVASLKEKI-ISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL-PVV 78 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l--~v~~~~TV~~LK~~I-~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i-~~~ 78 (108)
....++|+|++.+|+.+. + ++++++||++||++| ++..+ ++ +++|||||+||.|+|+.+|++|+| +++
T Consensus 16 ~~~~m~I~VKtl~g~~~~-i~v~v~~~~TV~~lK~~I~~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~dy~I~~~g 87 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFS-IEHDFSPSDTILQIKQHLISEEKA----SH---ISEIKLLLKGKVLHDNLFLSDLKVTPAN 87 (98)
T ss_dssp --CCEEEEEEECSSSCEE-EEEEECTTCBHHHHHHHHHHTTSC----SC---GGGEEEEETTEEECTTCBGGGSCCBTTB
T ss_pred CCCCEEEEEEcCCCCEEE-EEEecCCCChHHHHHHHHHHHhcC----CC---hhhEEEEECCEECcCcCCHHHcCcCCCC
Confidence 356799999999999765 5 667999999999999 66656 77 999999999999999999999999 888
Q ss_pred CCCCcceEEEEEecCC
Q 033923 79 ELPGTAITMHVVLRPS 94 (108)
Q Consensus 79 ~~~~~~~tvhlv~~~~ 94 (108)
+ +|||+++.+
T Consensus 88 ~------ti~lmvskp 97 (98)
T 4a20_A 88 S------TITVMIKPN 97 (98)
T ss_dssp C------EEEEEECCC
T ss_pred C------EEEEEEeCC
Confidence 7 999998754
No 34
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.81 E-value=1.1e-19 Score=116.36 Aligned_cols=78 Identities=28% Similarity=0.364 Sum_probs=68.3
Q ss_pred eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcce
Q 033923 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85 (108)
Q Consensus 6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~ 85 (108)
.++|+++..+|+++. +++++++||++||++|++..+ +| ++.|||+|+||.|+|+.+|++|+|.+++
T Consensus 9 ~~~i~v~~~~G~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~qrL~~~Gk~L~D~~tL~~~gi~~g~------ 74 (88)
T 1sif_A 9 GLQLFIKTLTGKTFT-VEMEPSDTIENLKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES------ 74 (88)
T ss_dssp -CEEEEEETTSCEEE-EECCTTSBHHHHHHHHHHHHC----CC---GGGCEEEETTEECCTTSBSGGGTCCTTC------
T ss_pred ceEEEEEeCCCCEEE-EEECCCChHHHHHHHHHHHHC----cC---hhhEEEEECCEECCCCCcHHHcCCCCCC------
Confidence 478999999999998 999999999999999999998 78 8999999999999999999999999997
Q ss_pred EEEEEecCCCCC
Q 033923 86 TMHVVLRPSLPD 97 (108)
Q Consensus 86 tvhlv~~~~~~~ 97 (108)
++||+++.+++.
T Consensus 75 ~i~l~~r~~GG~ 86 (88)
T 1sif_A 75 TLHLVLRLRGGG 86 (88)
T ss_dssp EEEEEC------
T ss_pred EEEEEEeCCCCC
Confidence 999999998764
No 35
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.80 E-value=2.5e-19 Score=119.53 Aligned_cols=78 Identities=27% Similarity=0.342 Sum_probs=73.1
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~ 84 (108)
..++|+|+..+|+++. +++++++||.+||++|++..+ +| +++|||+|+||.|.|+.+|++|+|.+++
T Consensus 34 ~~m~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~~~gI~~gs----- 100 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES----- 100 (111)
T ss_dssp GCEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTSBTTTTTCCTTC-----
T ss_pred ccEEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHHHhC----CC---hHHEEEEECCEECCCCCcHHHCCCCCCC-----
Confidence 4699999999999998 999999999999999999998 78 8999999999999999999999999997
Q ss_pred eEEEEEecCCCC
Q 033923 85 ITMHVVLRPSLP 96 (108)
Q Consensus 85 ~tvhlv~~~~~~ 96 (108)
+|||+++.+++
T Consensus 101 -~I~l~~rl~GG 111 (111)
T 3vdz_A 101 -TLHLVLRLRGG 111 (111)
T ss_dssp -EEEEEECCCC-
T ss_pred -EEEEEEecCCC
Confidence 99999998864
No 36
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=2.9e-19 Score=118.17 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=73.9
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~ 83 (108)
...++|+||..+|+++. +++++++||.+||++|+...+ ++ +++|||+|+||.|+|+.+|++|+|.+++
T Consensus 21 ~~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~ygI~~g~---- 88 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLK-LVVRSTDTVFHMKRRLHAAEG----VE---PGSQRWFFSGRPLTDKMKFEELKIPKDY---- 88 (106)
T ss_dssp CCSEEEEEEETTTEEEE-EEECTTSHHHHHHHHHHHTTC----CC---STTCEEEETTEECCTTSHHHHCCCSSSC----
T ss_pred CCeEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHHHHC----cC---cccEEEEECCEECCCCCcHHHcCCCCCC----
Confidence 34689999999999988 999999999999999999998 88 8999999999999999999999999997
Q ss_pred ceEEEEEecCCCCCC
Q 033923 84 AITMHVVLRPSLPDK 98 (108)
Q Consensus 84 ~~tvhlv~~~~~~~~ 98 (108)
+|||+.+.....+
T Consensus 89 --ti~lv~~~~~~~~ 101 (106)
T 1ttn_A 89 --VVQVIVSQPVQNP 101 (106)
T ss_dssp --EEEEECCCSSCC-
T ss_pred --EEEEEEeCCCCCC
Confidence 9999998766543
No 37
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.80 E-value=8.4e-20 Score=120.40 Aligned_cols=75 Identities=17% Similarity=0.297 Sum_probs=64.7
Q ss_pred CceEEEEEEeCCCC--eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCccccc--CCCCCC
Q 033923 4 EDLIELKFRLADGA--DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAES--RLPVVE 79 (108)
Q Consensus 4 ~~~i~i~~r~~~g~--~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~--~i~~~~ 79 (108)
...++|+||+.+|+ ++. +++++++||++||++|+++++. ++ + +++|||||+||+|+|+.+|++| +|++++
T Consensus 21 ~~~m~I~VK~~~g~~~~i~-l~v~~~~TV~~LK~~I~~~~~g---~p-p-~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~ 94 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQT-ISCFLNWTVGKLKTHLSNVYPS---KP-L-TKDQRLVYSGRLLPDHLQLKDILRKQDEYH 94 (99)
T ss_dssp --CEEEEEECTTSSSCCEE-EEECTTSBHHHHHHHHHHHSTT---CC-C-TTTCCEEETTEEECTTSBTHHHHTTTCSEE
T ss_pred CCeEEEEEEcCCCCEEEEE-EEcCCCCHHHHHHHHHHHHhcC---CC-C-hhhEEEEECCEECCCCCCHHHHhcCCCCCC
Confidence 45699999999998 666 8999999999999999997642 33 2 6999999999999999999999 999886
Q ss_pred CCCcceEEEEE
Q 033923 80 LPGTAITMHVV 90 (108)
Q Consensus 80 ~~~~~~tvhlv 90 (108)
+||||
T Consensus 95 ------tihLv 99 (99)
T 2kdb_A 95 ------MVHLV 99 (99)
T ss_dssp ------EEEEC
T ss_pred ------EEEeC
Confidence 99986
No 38
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.80 E-value=1.7e-19 Score=116.70 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=74.5
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~ 82 (108)
....++|+|+.. |+++. +++++++||.+||++|++..+ ++ +++|||+|+||.|+|+.+|++|+|.+++
T Consensus 14 ~~~~m~i~Vk~~-g~~~~-~~v~~~~TV~~LK~~I~~~~g----ip---~~~qrL~~~Gk~L~D~~tL~~~gi~~g~--- 81 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDCHE-FFLAENSNVRRFKKQISKYLH----CN---ADRLVLIFTGKILRDQDILSQRGILDGS--- 81 (96)
T ss_dssp CSCEEEEEEECS-SSEEE-EEEETTCCHHHHHHHHHHHTC----SC---TTTBCCEETTEECCTTSCHHHHTCCTTE---
T ss_pred CCCcEEEEEEEC-CeEEE-EEECCCCCHHHHHHHHHHHhC----CC---HHHEEEEECCEECCCcCCHHHCCCCCCC---
Confidence 456799999998 88887 999999999999999999998 88 8999999999999999999999999986
Q ss_pred cceEEEEEecCCCCCC
Q 033923 83 TAITMHVVLRPSLPDK 98 (108)
Q Consensus 83 ~~~tvhlv~~~~~~~~ 98 (108)
+|||+++..+++.
T Consensus 82 ---~i~l~~~~~~g~~ 94 (96)
T 1wx8_A 82 ---TVHVVVRSHSGPS 94 (96)
T ss_dssp ---EEECCBCCSSCSS
T ss_pred ---EEEEEEeCCCCCC
Confidence 9999999887654
No 39
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.79 E-value=8.9e-19 Score=113.79 Aligned_cols=77 Identities=27% Similarity=0.368 Sum_probs=71.5
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+||..+|+++. +++++++||++||++|++..+ ++ +++|||+|+||.|+|+.+|++|+|.+++ +
T Consensus 1 M~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~~g----i~---~~~qrL~~~Gk~L~D~~tL~~~gi~~g~------~ 66 (98)
T 1yx5_B 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (98)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHHTC----CC---GGGEEEEETTEECCTTSBTGGGTCCTTC------E
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHC----cC---hhhEEEEECCEECCCCCCHHHcCCCCCC------E
Confidence 47899999999987 999999999999999999998 88 8999999999999999999999999997 9
Q ss_pred EEEEecCCCCC
Q 033923 87 MHVVLRPSLPD 97 (108)
Q Consensus 87 vhlv~~~~~~~ 97 (108)
+||+.+..++.
T Consensus 67 i~l~~~~~gG~ 77 (98)
T 1yx5_B 67 LHLVLRLRGGR 77 (98)
T ss_dssp EEEEECCCCC-
T ss_pred EEEEEeCCCCC
Confidence 99999988654
No 40
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.79 E-value=7.5e-19 Score=116.91 Aligned_cols=80 Identities=24% Similarity=0.266 Sum_probs=74.7
Q ss_pred ceEEEEEEeC---CCCeeeeeEeCC-cchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCC
Q 033923 5 DLIELKFRLA---DGADIGPSKFSP-TTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL 80 (108)
Q Consensus 5 ~~i~i~~r~~---~g~~~~~l~v~~-~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~ 80 (108)
..++|+|++. +|+.+. +++++ ++||.+||++|+...+ ++ +++|||+|+|++|+|+.+|++|+|.+++
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~-l~v~~l~~TV~~LK~~I~~~~g----ip---~~~QrL~~~Gk~L~D~~tL~~y~I~~g~- 96 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFME-ITVQSLSENVGSLKEKIAGEIQ----IP---ANKQKLSGKAGFLKDNMSLAHYNVGAGE- 96 (111)
T ss_dssp SCEEEEECCTTCSSSCCEE-EEESCSSSBHHHHHHHHHHHTT----CC---TTTSEEECSSSBCCTTSBTTTTTCSSSC-
T ss_pred CcEEEEEEecccCCCcEEE-EEecCCCCcHHHHHHHHHHHHC----CC---HHHeEEEECCEECCCCCcHHHCCCCCCC-
Confidence 5689999998 888888 99998 9999999999999998 88 9999999999999999999999999997
Q ss_pred CCcceEEEEEecCCCCCC
Q 033923 81 PGTAITMHVVLRPSLPDK 98 (108)
Q Consensus 81 ~~~~~tvhlv~~~~~~~~ 98 (108)
+|||+++.+++++
T Consensus 97 -----~l~l~~r~~GGk~ 109 (111)
T 1we6_A 97 -----ILTLSLRERSGPS 109 (111)
T ss_dssp -----EEEEECSSCCSSC
T ss_pred -----EEEEEEEcCCCCC
Confidence 9999999998854
No 41
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.79 E-value=8.7e-19 Score=108.20 Aligned_cols=72 Identities=25% Similarity=0.333 Sum_probs=67.5
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+|+. +|+.+. +++++++||++||++|++..+ ++ +++|||+|+||.|+|+.+|++|+|.+|+ +
T Consensus 5 m~i~vk~-~g~~~~-~~v~~~~tV~~LK~~i~~~~~----i~---~~~qrL~~~gk~L~d~~tL~~~~i~~g~------~ 69 (77)
T 2bwf_A 5 LNIHIKS-GQDKWE-VNVAPESTVLQFKEAINKANG----IP---VANQRLIYSGKILKDDQTVESYHIQDGH------S 69 (77)
T ss_dssp EEEEEEE-TTEEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTSBTGGGTCCTTC------E
T ss_pred EEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHHHhC----CC---HHHEEEEECCeEcCCCCCHHHcCCCCCC------E
Confidence 7899999 898887 999999999999999999988 78 8999999999999999999999999997 9
Q ss_pred EEEEecC
Q 033923 87 MHVVLRP 93 (108)
Q Consensus 87 vhlv~~~ 93 (108)
+|++.++
T Consensus 70 i~l~~~~ 76 (77)
T 2bwf_A 70 VHLVKSQ 76 (77)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 9998865
No 42
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=8e-19 Score=117.79 Aligned_cols=81 Identities=25% Similarity=0.282 Sum_probs=75.5
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~ 84 (108)
..++|+++..+|+++. +++++++||.+||++|++..+ ++ +++|||+|+|+.|+|+.+|++|+|.+++
T Consensus 8 ~~~~i~vk~l~G~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~ygI~~gs----- 74 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTIT-LEVESSDTIDNVKSKIQDKEG----IP---PDQQRLIWAGKQLEDGRTLSDYNIQRES----- 74 (114)
T ss_dssp CCCEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTCBTTTTTCCSSC-----
T ss_pred CcEEEEEEeCCCcEEE-EEECCCCcHHHHHHHHHHHHC----cC---hHHEEEEECCEECCCCCcHHHCCCCCCC-----
Confidence 4689999999999998 999999999999999999998 88 9999999999999999999999999997
Q ss_pred eEEEEEecCCCCCCC
Q 033923 85 ITMHVVLRPSLPDKK 99 (108)
Q Consensus 85 ~tvhlv~~~~~~~~~ 99 (108)
+|||+.+.+++...
T Consensus 75 -tI~l~~~~~GG~~~ 88 (114)
T 2kdi_A 75 -TLHLVLRLRGGSMG 88 (114)
T ss_dssp -EEEEEECCCSSCCC
T ss_pred -EEEEEEEcCCCcee
Confidence 99999999887543
No 43
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=115.17 Aligned_cols=76 Identities=21% Similarity=0.151 Sum_probs=69.4
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~ 84 (108)
..++|+|+. |+++. +++++++||.+||++|++..+ ++ +++|||+|+||.|+|+.+|++|+|.+++
T Consensus 18 ~~m~I~Vk~--g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~y~I~~gs----- 82 (93)
T 2l7r_A 18 GSMQLFVRA--QELHT-FEVTGQETVAQIKAHVASLEG----IA---PEDQVVLLAGAPLEDEATLGQCGVEALT----- 82 (93)
T ss_dssp --CEEEEES--SSEEE-EECCSSCBHHHHHHHHHHHHT----CC---GGGCEEEETTEECCTTSBHHHHTCCSSC-----
T ss_pred CcEEEEEEC--CCEEE-EEeCCCCcHHHHHHHHHHHhC----cC---hhHEEEEECCEECCCCCcHHHCCCCCCC-----
Confidence 457899988 88887 999999999999999999998 78 9999999999999999999999999997
Q ss_pred eEEEEEecCCCC
Q 033923 85 ITMHVVLRPSLP 96 (108)
Q Consensus 85 ~tvhlv~~~~~~ 96 (108)
+|||+++.+++
T Consensus 83 -tI~lv~rl~GG 93 (93)
T 2l7r_A 83 -TLEVAGRMLGG 93 (93)
T ss_dssp -EEEEECCCCCC
T ss_pred -EEEEEEecCCC
Confidence 99999998874
No 44
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.79 E-value=7.1e-19 Score=125.29 Aligned_cols=80 Identities=25% Similarity=0.322 Sum_probs=72.8
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+||..+|+++. +++++++||.+||++|++..+ ++ +++|||+|+||.|+|+.+|++|+|++++ +
T Consensus 1 MqI~Vk~~~Gk~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~~y~I~~gs------t 66 (169)
T 3l0w_B 1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (169)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHHHC----CC---TTTEEEEETTEECCTTSBGGGGTCCTTC------E
T ss_pred CEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHHHHC----cC---HHHEEEEECCccccCcCcHHHcCCCCCC------E
Confidence 47999999999998 999999999999999999998 88 8999999999999999999999999997 9
Q ss_pred EEEEecCCCCCCCC
Q 033923 87 MHVVLRPSLPDKKG 100 (108)
Q Consensus 87 vhlv~~~~~~~~~~ 100 (108)
+||+++.+++.+.+
T Consensus 67 I~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 67 LHLVLRLRGGGGET 80 (169)
T ss_dssp EEEEECCCC---CC
T ss_pred EEEEEEeccccccc
Confidence 99999999886654
No 45
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.79 E-value=8.9e-19 Score=117.32 Aligned_cols=81 Identities=16% Similarity=0.206 Sum_probs=74.2
Q ss_pred ceEEEEEEeCC----------CCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccC
Q 033923 5 DLIELKFRLAD----------GADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESR 74 (108)
Q Consensus 5 ~~i~i~~r~~~----------g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~ 74 (108)
..|+|+|+..+ |+++. +++++++||.+||++|+...+ ++ +++|||+|+|+.|+|+.+|++|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~QrL~~~Gk~L~D~~tL~~y~ 95 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLV-FTLPLTDQVSVIKVKIHEATG----MP---AGKQKLQYEGIFIKDSNSLAYYN 95 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEE-EEECSCSBTHHHHHHHHHHSS----CC---TTTEEEEETTEEECTTSBHHHHT
T ss_pred CCEEEEEEcCCCccccccccCCeEEE-EEECCCCCHHHHHHHHHHHHC----CC---hHHEEEEECCEECCCCCCHHHCC
Confidence 47889999864 66787 999999999999999999998 88 99999999999999999999999
Q ss_pred CCCCCCCCcceEEEEEecCCCCCCC
Q 033923 75 LPVVELPGTAITMHVVLRPSLPDKK 99 (108)
Q Consensus 75 i~~~~~~~~~~tvhlv~~~~~~~~~ 99 (108)
|.+++ +|||+++.++++++
T Consensus 96 i~~g~------~i~lv~rl~GGk~~ 114 (115)
T 1we7_A 96 MASGA------VIHLALKERSGPSS 114 (115)
T ss_dssp CCSSC------EEEEEECCCSCCSC
T ss_pred CCCCC------EEEEEEEcCCCCCC
Confidence 99997 99999999998765
No 46
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=8.7e-19 Score=115.64 Aligned_cols=81 Identities=26% Similarity=0.344 Sum_probs=73.6
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~ 82 (108)
+...++|+|+..+|+ +. +++++++||.+||++|++..+ ++ +++|||+|+||.|+|+.+|++|+|.+++
T Consensus 14 ~~~~m~I~Vk~~~g~-~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~~gi~~g~--- 81 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK-ED-FSVTDTCTIQQLKEEISQRFK----AH---PDQLVLIFAGKILKDPDSLAQCGVRDGL--- 81 (106)
T ss_dssp CSSEEEEEEECSSCE-EE-EEEETTCCHHHHHHHHHHHHT----CC---TTTEEEEETTEECCTTSCHHHHTCCTTE---
T ss_pred CCceEEEEEEeCCCc-EE-EEECCCCcHHHHHHHHHHHHC----cC---hhhEEEEECCEECCCcCcHHHcCCCCCC---
Confidence 467799999999886 66 999999999999999999998 78 8999999999999999999999999886
Q ss_pred cceEEEEEecCCCCCC
Q 033923 83 TAITMHVVLRPSLPDK 98 (108)
Q Consensus 83 ~~~tvhlv~~~~~~~~ 98 (108)
+|||+++..++..
T Consensus 82 ---~i~l~~~~~~~~~ 94 (106)
T 1wx7_A 82 ---TVHLVIKRQHRAM 94 (106)
T ss_dssp ---EEEEEECCCCCSC
T ss_pred ---EEEEEEcCCCCCC
Confidence 9999999877654
No 47
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=7.3e-19 Score=115.47 Aligned_cols=81 Identities=26% Similarity=0.345 Sum_probs=73.6
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~ 82 (108)
....++|+|+..+|+ +. +++++++||.+||++|++..+ ++ +++|||||+||.|+|+.+|++|+|.+++
T Consensus 19 ~~~~m~I~Vk~~~g~-~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~~ygI~~gs--- 86 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-ED-FSVTDTCTIQQLKEEISQRFK----AH---PDQLVLIFAGKILKDPDSLAQCGVRDGL--- 86 (100)
T ss_dssp CTTEEEEEEECSSCE-EE-EEEETTCBHHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTSBHHHHTCCTTC---
T ss_pred CCCeEEEEEEcCCCc-EE-EEECCCCcHHHHHHHHHHHHC----cC---hhhEEEEECCEECCCcCcHHHCCCCCCC---
Confidence 356799999999886 66 999999999999999999998 78 8999999999999999999999999997
Q ss_pred cceEEEEEecCCCCCC
Q 033923 83 TAITMHVVLRPSLPDK 98 (108)
Q Consensus 83 ~~~tvhlv~~~~~~~~ 98 (108)
+|||+++.++++.
T Consensus 87 ---tI~l~~r~~~~p~ 99 (100)
T 1yqb_A 87 ---TVHLVIKRQHRAM 99 (100)
T ss_dssp ---EEEEEECCCCSCC
T ss_pred ---EEEEEEcCCCCCC
Confidence 9999999877653
No 48
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=114.41 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=71.8
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~ 82 (108)
+...++|+|+.. |+++. +++++++||++||++|++..+ ++ +++|||+|+||.|+|+.+|++|+|.+++
T Consensus 22 ~~~~m~I~Vk~~-g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~~gI~~g~--- 89 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEE-FAVPENSSVQQFKEEISKRFK----SH---TDQLVLIFAGKILKDQDTLSQHGIHDGL--- 89 (101)
T ss_dssp -CCCEEEEEECS-SCEEE-EEECSCCCHHHHHHHHHHHHT----CC---GGGEEEEETTEEECTTCCTGGGTCCTTC---
T ss_pred CCCeEEEEEEeC-CcEEE-EEECCCCCHHHHHHHHHHHHC----cC---hhhEEEEECCEECCCcCcHHHcCCCCCC---
Confidence 446789999998 88887 999999999999999999998 78 8999999999999999999999999997
Q ss_pred cceEEEEEecCCCC
Q 033923 83 TAITMHVVLRPSLP 96 (108)
Q Consensus 83 ~~~tvhlv~~~~~~ 96 (108)
+|||+.+.+..
T Consensus 90 ---~I~l~~~~~~~ 100 (101)
T 2klc_A 90 ---TVHLVIKTQNR 100 (101)
T ss_dssp ---EEEEEECCSSC
T ss_pred ---EEEEEEcCCCC
Confidence 99999987653
No 49
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.78 E-value=1.1e-18 Score=121.40 Aligned_cols=79 Identities=24% Similarity=0.210 Sum_probs=72.3
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~ 84 (108)
..++|+|+..+|+++. +++++++||.+||++|++..+ +| +++|||+|+|+.|+|+.+|++|+|++++
T Consensus 80 ~~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~g----ip---~~~q~L~~~G~~L~d~~tL~~y~i~~g~----- 146 (159)
T 3rt3_B 80 EPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGLEG----VQ---DDLFWLTFEGKPLEDQLPLGEYGLKPLS----- 146 (159)
T ss_dssp CCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTSBGGGGTCCTTC-----
T ss_pred CcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHHHHC----CC---HHHEEEEECCeecCCCCCHHHcCCCCCC-----
Confidence 4588999999999998 999999999999999999998 88 9999999999999999999999999997
Q ss_pred eEEEEEecCCCCC
Q 033923 85 ITMHVVLRPSLPD 97 (108)
Q Consensus 85 ~tvhlv~~~~~~~ 97 (108)
++||+++.+++.
T Consensus 147 -~l~l~~rl~GG~ 158 (159)
T 3rt3_B 147 -TVFMNLRLRGGG 158 (159)
T ss_dssp -EEEEEECCC---
T ss_pred -EEEEEEecCCCC
Confidence 999999998874
No 50
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=4e-19 Score=118.53 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=73.5
Q ss_pred CCCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCC------------CCceEEEEcCcccC-CCC
Q 033923 2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKT------------VNNVQLIHAGKILE-DNM 68 (108)
Q Consensus 2 ~~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~------------~~~qRLIy~Gk~L~-D~~ 68 (108)
.++..++|+|+..+|+++. ++|++++||.+||++|++..+ ++|.. +++|||||+||.|. |+.
T Consensus 3 ~~~~~M~I~Vk~l~g~~~~-v~V~~~~TV~dLK~~I~~~~~----i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~ 77 (105)
T 1v2y_A 3 SGSSGMTVRVCKMDGEVMP-VVVVQNATVLDLKKAIQRYVQ----LKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRK 77 (105)
T ss_dssp CCCCSEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHHHH----HHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSS
T ss_pred CCCCcEEEEEEecCCCEEE-EEECCCChHHHHHHHHHHHhC----CCcccccCcceeeeeecceeEEEEeCCcCccCCcC
Confidence 4677899999999999998 999999999999999999887 55210 15789999999996 669
Q ss_pred cccccCCCCCCCCCcceEEEEEecCCCC
Q 033923 69 TIAESRLPVVELPGTAITMHVVLRPSLP 96 (108)
Q Consensus 69 tL~~~~i~~~~~~~~~~tvhlv~~~~~~ 96 (108)
+|++|+|.+++ +||++.+.++.
T Consensus 78 tL~dygI~~g~------~l~lv~~lr~~ 99 (105)
T 1v2y_A 78 KLRDYGIRNRD------EVSFIKKLGQK 99 (105)
T ss_dssp BHHHHTCCSSE------EEEEEECSCSC
T ss_pred CHHHcCCCCCC------EEEEEehhccC
Confidence 99999999997 99999998776
No 51
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=6.6e-19 Score=119.57 Aligned_cols=81 Identities=25% Similarity=0.290 Sum_probs=72.6
Q ss_pred CCceEEEEEEe-CCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCC
Q 033923 3 GEDLIELKFRL-ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELP 81 (108)
Q Consensus 3 ~~~~i~i~~r~-~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~ 81 (108)
++..++|+|.+ ..|..+. ++++++.||++||++++...+ +| ++.|||||+||+|.|++||++|||+++.
T Consensus 12 ~~~~itvkv~l~~~~~k~t-v~v~~d~TV~dLKe~ls~~~~----iP---~e~qrLIy~GKiLKD~eTL~~~gIk~g~-- 81 (118)
T 2daf_A 12 EDSLATVKVVLIPVGQEIV-IPFKVDTILKYLKDHFSHLLG----IP---HSVLQIRYSGKILKNNETLVQHGVKPQE-- 81 (118)
T ss_dssp CSSCEEEEEEETTTCCEEE-EEECSSSCSHHHHHHHHHHHT----CC---TTTEEEEETTEEECSSCCHHHHSCCSSC--
T ss_pred cCccEEEEEEEcCCCcEEE-EEeCCCCcHHHHHHHHHhhhC----CC---hHHEEEEECCeEcCCcchHHHcCCCCCC--
Confidence 56778999985 4677777 999999999999999999988 88 9999999999999999999999999997
Q ss_pred CcceEEEEEecCCCCC
Q 033923 82 GTAITMHVVLRPSLPD 97 (108)
Q Consensus 82 ~~~~tvhlv~~~~~~~ 97 (108)
|+||+++...+.
T Consensus 82 ----TIhLvi~s~~p~ 93 (118)
T 2daf_A 82 ----IVQVEIFSTNPD 93 (118)
T ss_dssp ----EEEEEEEESCTT
T ss_pred ----EEEEEEecCCCc
Confidence 999999976553
No 52
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=1.3e-18 Score=118.72 Aligned_cols=82 Identities=22% Similarity=0.324 Sum_probs=70.1
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~ 82 (108)
+...++|+|+.. |+++. +++++++||.+||++|+...+ ++ +++|||||+||.|+|+.+|++|+|.+++
T Consensus 29 ~~~~m~I~Vk~~-g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~dygI~~gs--- 96 (125)
T 1j8c_A 29 EPKIIKVTVKTP-KEKEE-FAVPENSSVQQFKEAISKRFK----SQ---TDQLVLIFAGKILKDQDTLIQHGIHDGL--- 96 (125)
T ss_dssp CCCCEEEEEECS-SCEEE-EEECTTCCHHHHHHHHHHHHC----SC---SSSEEEEETTEEESTTSCGGGTTCSSSE---
T ss_pred CCCcEEEEEEeC-CeEEE-EEECCCCcHHHHHHHHHHHHC----cC---cceEEEEECCEEcCCCCCHHHcCCCCCC---
Confidence 346799999998 88887 999999999999999999998 88 8999999999999999999999999886
Q ss_pred cceEEEEEecCCCCCCC
Q 033923 83 TAITMHVVLRPSLPDKK 99 (108)
Q Consensus 83 ~~~tvhlv~~~~~~~~~ 99 (108)
+|||+.+..++...
T Consensus 97 ---tI~lv~~~~gg~~~ 110 (125)
T 1j8c_A 97 ---TVHLVIKRDPNSSS 110 (125)
T ss_dssp ---EEEEEEC-------
T ss_pred ---EEEEEeccCCCCCC
Confidence 99999998876543
No 53
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.77 E-value=2.6e-18 Score=110.97 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=72.3
Q ss_pred CCCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCC-CcccccCCCCCCC
Q 033923 2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDN-MTIAESRLPVVEL 80 (108)
Q Consensus 2 ~~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~-~tL~~~~i~~~~~ 80 (108)
.++..++|+|+..+|+.+. +++++++||.+||++|+... +++|||||+||.|+|+ .+|++|+|.+++
T Consensus 3 ~~~~~m~i~Vk~~~g~~~~-~~v~~~~TV~~LK~~i~~~~----------~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~- 70 (95)
T 1wia_A 3 SGSSGINVRLKFLNDTEEL-AVARPEDTVGTLKSKYFPGQ----------ESQMKLIYQGRLLQDPARTLSSLNITNNC- 70 (95)
T ss_dssp CCCCSEEEEEEETTTEEEE-EEECSSSBHHHHHHHHSSST----------TTTCEEEETTEECCCSSCBTTTTTCCTTE-
T ss_pred CCCCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHhhC----------cCcEEEEECCEEccCCcCCHHHcCCCCCC-
Confidence 3577899999999999987 99999999999999998764 4899999999999999 999999999986
Q ss_pred CCcceEEEEEecCCCCCCCC
Q 033923 81 PGTAITMHVVLRPSLPDKKG 100 (108)
Q Consensus 81 ~~~~~tvhlv~~~~~~~~~~ 100 (108)
+|||+++.+.....+
T Consensus 71 -----~i~l~~~~~~~~~~~ 85 (95)
T 1wia_A 71 -----VIHCHRSPPGAAVSG 85 (95)
T ss_dssp -----EEEEECCCCCCCCCC
T ss_pred -----EEEEEECCCCCCCCC
Confidence 999999876654443
No 54
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=114.37 Aligned_cols=78 Identities=27% Similarity=0.342 Sum_probs=72.8
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~ 84 (108)
..++|+|+..+|+.+. +++++++||.+||++|++..+ ++ +++|||+|+||.|+|+.+|++|+|.+++
T Consensus 34 ~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~~gI~~gs----- 100 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES----- 100 (111)
T ss_dssp SCEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHHHC----CC---TTTEEEEETTEECCSSCBTTTTTCCTTC-----
T ss_pred CeEEEEEEcCCCCEEE-EEeCCCCCHHHHHHHHHHHHC----cC---cccEEEEECCEECCCCCcHHHcCCCCCC-----
Confidence 5799999999999987 999999999999999999998 78 8999999999999999999999999997
Q ss_pred eEEEEEecCCCC
Q 033923 85 ITMHVVLRPSLP 96 (108)
Q Consensus 85 ~tvhlv~~~~~~ 96 (108)
+|||+++.+++
T Consensus 101 -~I~l~~rl~GG 111 (111)
T 2ojr_A 101 -TLHLVLRLRGG 111 (111)
T ss_dssp -EEEEEECCCC-
T ss_pred -EEEEEEeCCCC
Confidence 99999998764
No 55
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.63 E-value=3.1e-20 Score=114.82 Aligned_cols=75 Identities=21% Similarity=0.335 Sum_probs=70.0
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+||..+|+++. +++++++||.+||++|++..+ ++ +++|||+|+|+.|+|+.+|++|+|.+++ +
T Consensus 1 M~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~g----i~---~~~qrL~~~gk~L~d~~tL~~~~i~~g~------~ 66 (76)
T 3b1l_X 1 MIVFVRFNSSYGFP-VEVDSDTSILQLKEVVAKQQG----VP---ADQLRVIFAGKELPNHLTVQNCDLEQQS------I 66 (76)
Confidence 47889999999887 999999999999999999988 78 8999999999999999999999999997 9
Q ss_pred EEEEecCCC
Q 033923 87 MHVVLRPSL 95 (108)
Q Consensus 87 vhlv~~~~~ 95 (108)
+||++++++
T Consensus 67 i~l~~rlrg 75 (76)
T 3b1l_X 67 VHIVQRPRR 75 (76)
Confidence 999999875
No 56
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.76 E-value=3.9e-18 Score=112.00 Aligned_cols=85 Identities=7% Similarity=0.094 Sum_probs=74.4
Q ss_pred CceEEEEEEeCCC----CeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCC-CcccccCCCCC
Q 033923 4 EDLIELKFRLADG----ADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDN-MTIAESRLPVV 78 (108)
Q Consensus 4 ~~~i~i~~r~~~g----~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~-~tL~~~~i~~~ 78 (108)
...++|+|+..++ +.+. +++++++||.+||++|++..+ ++ +++|||+|+||.|+|+ .+|++|+|.++
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~-i~v~~~~TV~~LK~~I~~~~g----ip---~~~qrL~~~gk~L~D~~~tL~~ygI~~g 76 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFS-LQVNPDFELSNFRVLCELESG----VP---AEEAQIVYMEQLLTDDHCSLGSYGLKDG 76 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEE-EEECTTCBHHHHHHHHHHHTC----CC---GGGBCEEETTEEECCSSSBHHHHTCCTT
T ss_pred CCeEEEEEEECCCCcCceEEE-EEcCCCCCHHHHHHHHHHHHC----cC---hHHeEEEECCEECCCCcccHHHCCCCCC
Confidence 4568999999755 6777 999999999999999999999 88 9999999999999988 69999999999
Q ss_pred CCCCcceEEEEEecCCCCCCCCCC
Q 033923 79 ELPGTAITMHVVLRPSLPDKKGGN 102 (108)
Q Consensus 79 ~~~~~~~tvhlv~~~~~~~~~~~~ 102 (108)
+ +|||+.+.+++......
T Consensus 77 ~------~l~l~~~~~gg~~~~~~ 94 (102)
T 1v5o_A 77 D------MVVLLQKDNVGLRTPGR 94 (102)
T ss_dssp E------EEEECBCCCCCCSSCCC
T ss_pred C------EEEEEECCCCCCCCCCC
Confidence 7 99999998877655444
No 57
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.76 E-value=1.3e-18 Score=118.30 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=66.7
Q ss_pred EEEEEeCCCC-eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCC-CCcce
Q 033923 8 ELKFRLADGA-DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL-PGTAI 85 (108)
Q Consensus 8 ~i~~r~~~g~-~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~-~~~~~ 85 (108)
.++|++..++ ++. +++++++||.+||++|+...+ +| +++|||||+||+|+|+.||++|||..+.+ +.+..
T Consensus 2 ~vFl~Ikr~ktTI~-ldve~sdTV~~lK~kI~~~~g----iP---p~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~a 73 (118)
T 4ajy_B 2 DVFLMIRRHKTTIF-TDAKESSTVFELKRIVEGILK----RP---PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPA 73 (118)
T ss_dssp EEEEEEEEBTEEEE-EEEETTSBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCE
T ss_pred ceEEEEecCCEEEE-EEcCCCChHHHHHHHHHHHHC----CC---HHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCC
Confidence 4566666677 555 899999999999999999999 88 99999999999999999999999998322 23345
Q ss_pred EEEEEecCC
Q 033923 86 TMHVVLRPS 94 (108)
Q Consensus 86 tvhlv~~~~ 94 (108)
+|||++|..
T Consensus 74 tl~Lvlr~~ 82 (118)
T 4ajy_B 74 TVGLAFRAD 82 (118)
T ss_dssp EEEEEECCS
T ss_pred EEEEEEecC
Confidence 999999963
No 58
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.76 E-value=2.7e-18 Score=124.78 Aligned_cols=82 Identities=26% Similarity=0.298 Sum_probs=76.3
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~ 83 (108)
-+.++|+|+..+|+++. +++++++||.+||++|++..+ +| +++|||||+|+.|+|+.+|++|+|.+++
T Consensus 103 ~~eMqI~VKtl~Gkt~~-l~V~~s~TV~~LK~kI~~~~g----Ip---~~~QrLi~~Gk~L~D~~tL~dygI~~gs---- 170 (189)
T 3q3f_A 103 HYGGQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES---- 170 (189)
T ss_dssp CCCEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGCCEEETTEECCTTCBGGGGTCCTTC----
T ss_pred ccceeeeeecCCCCEEE-EEeCCCCcHHHHHHHHHhccC----CC---HHHEEEEECCEECCCCCCHHHCCCCCCC----
Confidence 35689999999999998 999999999999999999998 88 8999999999999999999999999997
Q ss_pred ceEEEEEecCCCCCCC
Q 033923 84 AITMHVVLRPSLPDKK 99 (108)
Q Consensus 84 ~~tvhlv~~~~~~~~~ 99 (108)
+|||+++.+++.+.
T Consensus 171 --tI~LvlrlrGG~~~ 184 (189)
T 3q3f_A 171 --TLHLVLRLRGGGQT 184 (189)
T ss_dssp --EEEECCCCCCCCCC
T ss_pred --EEEEEEEcCCCCcc
Confidence 99999999987653
No 59
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.76 E-value=6.2e-20 Score=129.31 Aligned_cols=82 Identities=27% Similarity=0.334 Sum_probs=0.4
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+|+..+|+++. +++++++||.+||++|++..+ +| +++|||||+|+.|+|+.+|++|+|.+++ +
T Consensus 1 MqI~VK~l~G~~~~-l~V~~~~TV~~LK~~I~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~dygI~~gs------t 66 (152)
T 3u5c_f 1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHHHhC----CC---HHHEEEEECCEEccccCcHHHcCCCCCC------E
Confidence 47899999999987 999999999999999999998 88 8999999999999999999999999997 9
Q ss_pred EEEEecCCCCCCCCCC
Q 033923 87 MHVVLRPSLPDKKGGN 102 (108)
Q Consensus 87 vhlv~~~~~~~~~~~~ 102 (108)
|||+++..+++++..+
T Consensus 67 L~Lvlrl~GGgKkrkK 82 (152)
T 3u5c_f 67 LHLVLRLRGGGKKRKX 82 (152)
T ss_dssp ---------------C
T ss_pred EEEEeeccCCCcCccc
Confidence 9999999999766543
No 60
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=6.9e-18 Score=111.78 Aligned_cols=80 Identities=20% Similarity=0.188 Sum_probs=69.7
Q ss_pred ceEEEEEEeCCC---CeeeeeEeC--------C-cchHHHHHHHHHhhC--CCCCcCCCCCCCc-eEEEEcCcccCCCCc
Q 033923 5 DLIELKFRLADG---ADIGPSKFS--------P-TTTVASLKEKIISRW--PKEKENGPKTVNN-VQLIHAGKILEDNMT 69 (108)
Q Consensus 5 ~~i~i~~r~~~g---~~~~~l~v~--------~-~~TV~~LK~~I~~~~--~~~~~i~p~~~~~-qRLIy~Gk~L~D~~t 69 (108)
..++|+||..++ ..+. ++|+ + ++||.+||++|+... + ++ +++ |||||+||.|+|+.+
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~-l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~g----ip---~~~~qrLi~~Gk~L~D~~t 82 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSI-LQLPETELGEYSLGGYSISFLKQLIAGKLQES----VP---DPELIDLIYCGRKLKDDQT 82 (107)
T ss_dssp CSCCEEEEETTCTTSCCEE-ECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTT----CC---CSSSEEEEETTEECCTTCB
T ss_pred CceEEEEEeCCCCCccEEE-EEecCccccccCcccCCHHHHHHHHHHHhccC----CC---hhhcEEEEECCeECCCCCc
Confidence 458899999998 7776 8854 4 499999999999999 6 77 899 999999999999999
Q ss_pred ccccCCCCCCCCCcceEEEEEecCCCCCC
Q 033923 70 IAESRLPVVELPGTAITMHVVLRPSLPDK 98 (108)
Q Consensus 70 L~~~~i~~~~~~~~~~tvhlv~~~~~~~~ 98 (108)
|++|+|.+++ +|||+.+....+.
T Consensus 83 L~~y~i~~g~------~i~lv~~~~~~~~ 105 (107)
T 1x1m_A 83 LDFYGIQPGS------TVHVLRKSWSGPS 105 (107)
T ss_dssp HHHHTCCTTC------EEEEEESSCCSSC
T ss_pred HHHcCCCCCC------EEEEEeCCCCCCC
Confidence 9999999997 9999998765443
No 61
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1e-18 Score=115.08 Aligned_cols=75 Identities=24% Similarity=0.297 Sum_probs=66.6
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~ 83 (108)
+-.+.|+|+. .|+++. +++++++||++||++|++..+ ++ +++|||+|+||.|+|+.+|++|+|++|+
T Consensus 26 ~m~i~I~Vk~-~g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~~~gI~~g~---- 92 (101)
T 3m63_B 26 AMSLNIHIKS-GQDKWE-VNVAPESTVLQFKEAINKANG----IP---VANQRLIYSGKILKDDQTVESYHIQDGH---- 92 (101)
T ss_dssp ---CCEEEEC-SSCCCC-BCCCTTSBHHHHHHHHHHHHS----CC---STTCCEEETTEECCTTSBTTTTTCCTTE----
T ss_pred CcEEEEEEEE-CCEEEE-EEeCCCCCHHHHHHHHHHHHC----cC---hHHEEEEECCEECCCcCcHHHCCCCCCC----
Confidence 3457788886 888887 999999999999999999998 78 8999999999999999999999999997
Q ss_pred ceEEEEEecC
Q 033923 84 AITMHVVLRP 93 (108)
Q Consensus 84 ~~tvhlv~~~ 93 (108)
+|||+.+.
T Consensus 93 --tI~lv~~~ 100 (101)
T 3m63_B 93 --SVHLVKSQ 100 (101)
T ss_dssp --EEEECCCC
T ss_pred --EEEEEeCC
Confidence 99999874
No 62
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.75 E-value=2e-18 Score=117.38 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=61.9
Q ss_pred EEEEeCCCC-eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCC-CCcceE
Q 033923 9 LKFRLADGA-DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL-PGTAIT 86 (108)
Q Consensus 9 i~~r~~~g~-~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~-~~~~~t 86 (108)
++++...|+ ++. +++++++||.+||++|+...+ +| +++|||||+||.|+|+.+|++|+|++..+ +-...+
T Consensus 3 mfl~ir~~ktti~-lev~~sdTV~~lK~kI~~~eg----IP---~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~st 74 (118)
T 2fnj_B 3 VFLMIRRHKTTIF-TDAKESSTVFELKRIVEGILK----RP---PEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPAT 74 (118)
T ss_dssp EEEEEEEBTEEEE-EEEETTSBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEE
T ss_pred EEEEEecCCEEEE-EEeCCcChHHHHHHHHHHHhC----CC---HHHeEEEECCeECCCCCCHHHcCcccccccCCCCCE
Confidence 444444565 466 999999999999999999999 88 99999999999999999999999994111 001249
Q ss_pred EEEEec
Q 033923 87 MHVVLR 92 (108)
Q Consensus 87 vhlv~~ 92 (108)
+||++|
T Consensus 75 L~L~lr 80 (118)
T 2fnj_B 75 VGLAFR 80 (118)
T ss_dssp EEEEEB
T ss_pred EEEEec
Confidence 999999
No 63
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=9.5e-18 Score=109.46 Aligned_cols=78 Identities=9% Similarity=0.122 Sum_probs=70.5
Q ss_pred CCCceEEEEEEeCCCCee-eeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCC
Q 033923 2 AGEDLIELKFRLADGADI-GPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL 80 (108)
Q Consensus 2 ~~~~~i~i~~r~~~g~~~-~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~ 80 (108)
.+++.++|+|+. .|+.+ . +++++++||.+||++|++..+ ++ +++|||||.||.|+|+ +|++|+|.+++
T Consensus 3 ~~~~~m~i~Vk~-~g~~~~~-l~v~~~~TV~~lK~~I~~~tg----ip---~~~QkLi~~Gk~L~D~-tL~~~~I~~g~- 71 (96)
T 1wgg_A 3 SGSSGYSVTVKW-GKEKFEG-VELNTDEPPMVFKAQLFALTG----VQ---PARQKVMVKGGTLKDD-DWGNIKMKNGM- 71 (96)
T ss_dssp SCCCEEEEEEEE-TTEEEEE-EEEESSSCHHHHHHHHHHHTC----CC---TTTSCCEETTEECCSS-CCCSCCCCSSC-
T ss_pred CCCcEEEEEEEE-CCEEEEE-EEECCCCcHHHHHHHHHHHHC----cC---HHHeEEEECCcCCCCC-CHHHCCCCCCC-
Confidence 356789999996 67777 5 999999999999999999999 88 9999999999999999 99999999997
Q ss_pred CCcceEEEEEecCCC
Q 033923 81 PGTAITMHVVLRPSL 95 (108)
Q Consensus 81 ~~~~~tvhlv~~~~~ 95 (108)
+|||+..+..
T Consensus 72 -----~i~l~~~~~~ 81 (96)
T 1wgg_A 72 -----TVLMMGSADA 81 (96)
T ss_dssp -----EEECCCCCCC
T ss_pred -----EEEEEecchh
Confidence 9999988763
No 64
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=118.09 Aligned_cols=80 Identities=26% Similarity=0.342 Sum_probs=73.6
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~ 82 (108)
....++|+|+..+|+++. +++++++||.+||++|++..+ ++ +++|||+|+|+.|+|+.+|++|+|.+++
T Consensus 17 ~~~~m~i~Vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~~g----ip---~~~QrL~~~g~~L~d~~tL~~~~i~~~~--- 85 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES--- 85 (172)
T ss_dssp --CCEEEEEEETTTEEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTCBTGGGTCCTTC---
T ss_pred CCCcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHC----cC---hHHEEEEECCccccccCCHhHcCCcccc---
Confidence 456799999999999998 999999999999999999999 88 9999999999999999999999999997
Q ss_pred cceEEEEEecCCCC
Q 033923 83 TAITMHVVLRPSLP 96 (108)
Q Consensus 83 ~~~tvhlv~~~~~~ 96 (108)
++||+++..++
T Consensus 86 ---~l~l~~~~~gg 96 (172)
T 3u30_A 86 ---TLHLVLRLRGG 96 (172)
T ss_dssp ---EEEEEECCCCC
T ss_pred ---eeeeeeccccc
Confidence 99999987654
No 65
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=2.9e-17 Score=105.47 Aligned_cols=80 Identities=10% Similarity=0.076 Sum_probs=70.2
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCc-----chHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCC-CCcccccCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPT-----TTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILED-NMTIAESRLP 76 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~-----~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D-~~tL~~~~i~ 76 (108)
++..+.|+|+. .|+.+. ++++++ +||.+||++|++..+ ++ +++|||+|+||.|.| +.+|++|+|.
T Consensus 4 ~~~~~~v~Vk~-~~~~~~-i~v~~~~~~~~~TV~~LK~~i~~~~g----ip---~~~qrL~~~Gk~L~D~~~~L~~~~i~ 74 (92)
T 1wxv_A 4 GSSGLTVTVTH-SNEKHD-LHVTSQQGSSEPVVQDLAQVVEEVIG----VP---QSFQKLIFKGKSLKEMETPLSALGIQ 74 (92)
T ss_dssp CCSSEEEEEEC-SSSEEE-EEECCCSSSSSCBHHHHHHHHHHHTC----CC---TTTCEEEETTEEECCSSSBHHHHTCC
T ss_pred CCCeEEEEEEE-CCEEEE-EEECCCcCcccCcHHHHHHHHHHHHC----cC---HHHEEEEECCeecCCCcccHHHCCCC
Confidence 45679999998 577887 999995 999999999999998 88 999999999999998 5689999999
Q ss_pred CCCCCCcceEEEEEecCCCCC
Q 033923 77 VVELPGTAITMHVVLRPSLPD 97 (108)
Q Consensus 77 ~~~~~~~~~tvhlv~~~~~~~ 97 (108)
+++ +|||+.++...+
T Consensus 75 ~g~------~i~l~~~~~~~~ 89 (92)
T 1wxv_A 75 DGC------RVMLIGKKNSGP 89 (92)
T ss_dssp SSE------EEEEESCCSCSC
T ss_pred CCC------EEEEEecCCCCC
Confidence 886 999998876554
No 66
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=117.87 Aligned_cols=78 Identities=27% Similarity=0.346 Sum_probs=68.7
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~ 84 (108)
..+.|+|+..+|+++. +++++++||.+||++|+..++ +| +++|||+|+|+.|+|+.+|++|+|++++
T Consensus 95 gg~~i~Vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~~g----ip---~~~q~L~~~g~~L~D~~tL~~y~i~~g~----- 161 (172)
T 3u30_A 95 GGMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES----- 161 (172)
T ss_dssp CCEEEEEEESSCCEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGCCEEETTEECCTTSBSGGGTCCTTC-----
T ss_pred ccccceeecccCccee-EEecCCCCHHHHHHHHHHHhC----CC---ceeEEEEECCccCCCCCcHHHhCCCCCC-----
Confidence 3467888999999998 999999999999999999998 88 9999999999999999999999999997
Q ss_pred eEEEEEecCCCC
Q 033923 85 ITMHVVLRPSLP 96 (108)
Q Consensus 85 ~tvhlv~~~~~~ 96 (108)
++||+++.+++
T Consensus 162 -tl~l~~rlrgG 172 (172)
T 3u30_A 162 -TLHLVLRLRGG 172 (172)
T ss_dssp -EEEECC-----
T ss_pred -EEEEEEecCCC
Confidence 99999998764
No 67
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.72 E-value=3.9e-19 Score=121.14 Aligned_cols=77 Identities=26% Similarity=0.321 Sum_probs=0.5
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+|+..+|+++. +++++++||.+||++|++..+ +| +++|||+|+|+.|+|+.+|++|+|.+++ +
T Consensus 1 M~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~~~~I~~gs------t 66 (128)
T 3u5e_m 1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHHHhC----cC---hHHEEEEECCEECCCCCchhhhccCCCC------E
Confidence 47899999999998 999999999999999999998 88 8999999999999999999999999997 9
Q ss_pred EEEEecCCCCC
Q 033923 87 MHVVLRPSLPD 97 (108)
Q Consensus 87 vhlv~~~~~~~ 97 (108)
|||+++..++.
T Consensus 67 i~l~~rl~GG~ 77 (128)
T 3u5e_m 67 LHLVLRLRGGI 77 (128)
T ss_dssp ----------C
T ss_pred EEEEEEcCCCC
Confidence 99999998875
No 68
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.72 E-value=4.5e-17 Score=111.43 Aligned_cols=77 Identities=27% Similarity=0.350 Sum_probs=71.5
Q ss_pred eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcce
Q 033923 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85 (108)
Q Consensus 6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~ 85 (108)
.+.|+|+..+|+++. +++++++||.+||++|++..+ ++ ++.|||+|+|+.|+|+.+|++|+|.+++
T Consensus 76 ~~~i~Vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~~g----i~---~~~qrL~~~g~~L~d~~tL~~~~i~~~~------ 141 (152)
T 3b08_A 76 GMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES------ 141 (152)
T ss_dssp CEEEEEEESSSCEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTSBTGGGTCCTTC------
T ss_pred ccceeeeecCCCEEE-EEeCCCCcHHHHHHHHHHHhC----cC---hhhEEEEECCEECCCCCCHHHcCCCCCC------
Confidence 478889999999988 999999999999999999988 78 9999999999999999999999999997
Q ss_pred EEEEEecCCCC
Q 033923 86 TMHVVLRPSLP 96 (108)
Q Consensus 86 tvhlv~~~~~~ 96 (108)
++||+++.+++
T Consensus 142 ~i~l~~r~~GG 152 (152)
T 3b08_A 142 TLHLVLRLRGG 152 (152)
T ss_dssp EEEEEECCCC-
T ss_pred EEEEEEecCCC
Confidence 99999998874
No 69
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.71 E-value=3.9e-17 Score=108.97 Aligned_cols=75 Identities=17% Similarity=0.113 Sum_probs=65.4
Q ss_pred eEEEEEEeCCC--CeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCC-CCCCCCC
Q 033923 6 LIELKFRLADG--ADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL-PVVELPG 82 (108)
Q Consensus 6 ~i~i~~r~~~g--~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i-~~~~~~~ 82 (108)
.++|+|+...+ .++. ++++|++||++||++|++++| +| +++|||||+|++|+|+.+|++||| ++|+
T Consensus 24 ~l~v~v~d~~s~~~~i~-l~V~ps~TV~~LK~~I~~k~G----ip---p~~QRli~ggkll~D~~TL~~ygI~~~G~--- 92 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIW-LTVRPDMTVASLKDMVFLDYG----FP---PVLQQWVIGQRLARDQETLHSHGVRQNGD--- 92 (105)
T ss_dssp EEEEEEEESSSCCEEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEEECTTCBTGGGTCCSTTC---
T ss_pred EEEEEEEccCCCCceEE-EEECCcChHHHHHHHHHHHhC----CC---HHHEEEeccCeEccCcCcHHHcCCCCCCC---
Confidence 35666666654 5776 999999999999999999999 88 999999999999999999999999 5887
Q ss_pred cceEEEEEecCC
Q 033923 83 TAITMHVVLRPS 94 (108)
Q Consensus 83 ~~~tvhlv~~~~ 94 (108)
++||++-..
T Consensus 93 ---t~hL~l~~~ 101 (105)
T 4dbg_A 93 ---SAYLYLLSA 101 (105)
T ss_dssp ---EEEEEECCC
T ss_pred ---EEEEEEEec
Confidence 999998653
No 70
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.71 E-value=5.5e-17 Score=112.82 Aligned_cols=73 Identities=22% Similarity=0.329 Sum_probs=69.5
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE-E-cCcccCCCCcccccCCCCCCCCCcc
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI-H-AGKILEDNMTIAESRLPVVELPGTA 84 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI-y-~Gk~L~D~~tL~~~~i~~~~~~~~~ 84 (108)
++|+|++.+|+++. +++++++||.+||++|++..+ +| +++|||+ | +|+.|+|+.+|++|+|.+++
T Consensus 3 m~i~vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~~g----ip---~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~----- 69 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQ-VSLSSSMSVSELKAQITQKIG----VH---AFQQRLAVHPSGVALQDRVPLASQGLGPGS----- 69 (159)
T ss_dssp CEEEEEETTSCEEE-EECCTTCCHHHHHHHHHHHHC----CC---GGGEEEEEETTCCBCCTTSCGGGGTCCTTC-----
T ss_pred eEEEEEECCCCEEE-EEeCCCCcHHHHHHHHHHHhC----CC---HHHEEEEEcCCCCCCCCCCCHHHcCCCCCC-----
Confidence 78999999999998 999999999999999999999 88 9999999 9 89999999999999999997
Q ss_pred eEEEEEecC
Q 033923 85 ITMHVVLRP 93 (108)
Q Consensus 85 ~tvhlv~~~ 93 (108)
++||+++.
T Consensus 70 -~l~l~~~~ 77 (159)
T 3rt3_B 70 -TVLLVVDK 77 (159)
T ss_dssp -EEEEEECC
T ss_pred -EEEEEccC
Confidence 99999984
No 71
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.71 E-value=3.2e-17 Score=104.53 Aligned_cols=70 Identities=21% Similarity=0.191 Sum_probs=63.3
Q ss_pred EEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEEE
Q 033923 10 KFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHV 89 (108)
Q Consensus 10 ~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhl 89 (108)
.++..+|+++. +++++++||++||++|++..+ ++ +++|||+|+||.|+|+.+|++|+|.+++ ++||
T Consensus 15 ~~~~~~g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~qrL~~~Gk~L~D~~tL~~~gi~~g~------~l~l 80 (85)
T 2kd0_A 15 LTVKFGGKSIP-LSVSPDCTVKDLKSQLQPITN----VL---PRGQKLIFKGKVLVETSTLKQSDVGSGA------KLML 80 (85)
T ss_dssp EEEEETTEEEE-EEECTTSBHHHHHHHHHHHHC----CC---TTTCEEEETTEECCTTCBTTTTTCCTTE------EEEE
T ss_pred EEEEECCEEEE-EEECCCCcHHHHHHHHHHHHC----cC---hHHEEEEECCeECCCcCCHHHCCCCCCC------EEEE
Confidence 34456888887 999999999999999999998 88 8999999999999999999999999986 8999
Q ss_pred EecC
Q 033923 90 VLRP 93 (108)
Q Consensus 90 v~~~ 93 (108)
+..+
T Consensus 81 ~~s~ 84 (85)
T 2kd0_A 81 MASQ 84 (85)
T ss_dssp ECCC
T ss_pred EEeC
Confidence 8764
No 72
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.70 E-value=4.8e-17 Score=104.63 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=70.4
Q ss_pred CCceEEEEEEeCCCCeeeee-EeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE---EcCcccCCCCcccccCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPS-KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI---HAGKILEDNMTIAESRLPVV 78 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l-~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI---y~Gk~L~D~~tL~~~~i~~~ 78 (108)
+++.++|+|+. .|+++. + ++++++||.+||++|++..+ ++ +++|||+ |+|+.|+|+.+|++|+|.++
T Consensus 4 ~~~~m~i~Vk~-~g~~~~-i~~v~~~~TV~~lK~~I~~~~g----ip---~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g 74 (90)
T 1v5t_A 4 GSSGLPIIVKW-GGQEYS-VTTLSEDDTVLDLKQFLKTLTG----VL---PERQKLLGLKVKGKPAENDVKLGALKLKPN 74 (90)
T ss_dssp CCCSCCEEEEE-TTEEEE-ECSCCSSSBHHHHHHHHHHHTC----CC---TTTCEEESCEETTEECCTTSBHHHHTCCTT
T ss_pred CCceEEEEEEE-CCEEEE-EEEeCCCCCHHHHHHHHHHHHC----cC---HHHeEEEeeccCCcCcCCCCCHHHcCCCCC
Confidence 45678899997 788887 8 99999999999999999999 88 9999999 99999999999999999998
Q ss_pred CCCCcceEEEEEecCCC
Q 033923 79 ELPGTAITMHVVLRPSL 95 (108)
Q Consensus 79 ~~~~~~~tvhlv~~~~~ 95 (108)
+ +|||+..+..
T Consensus 75 ~------~l~l~~~~~~ 85 (90)
T 1v5t_A 75 T------KIMMMGTRES 85 (90)
T ss_dssp E------EEEEECCCSS
T ss_pred C------EEEEEecCcc
Confidence 6 9999887653
No 73
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=2.7e-17 Score=106.92 Aligned_cols=79 Identities=20% Similarity=0.180 Sum_probs=68.8
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~ 82 (108)
.+..++|+|+. .|+++. +++++++||.+||++|++..+ ++ +++|||+|.||.| |+.+|++|+|.+++
T Consensus 14 ~~~~~~i~Vk~-~g~~~~-i~v~~~~TV~~LK~~I~~~tg----ip---~~~QrL~~~Gk~L-dd~tL~~~~i~~g~--- 80 (95)
T 1v86_A 14 GKELVDLKIIW-NKTKHD-VKVPLDSTGSELKQKIHSITG----LP---PAMQKVMYKGLVP-EDKTLREIKVTSGA--- 80 (95)
T ss_dssp CCCCEEEEEEE-TTEEEE-EEECTTSBHHHHHHHHHHHHC----SC---STTCCCBSSSBCC-SSSBHHHHCCCTTE---
T ss_pred CCceEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHHHHC----cC---HHHeEEEECCeeC-CcCcHHHCCCCCCC---
Confidence 45678999985 577887 999999999999999999999 88 9999999999999 55699999999886
Q ss_pred cceEEEEEecCCCCC
Q 033923 83 TAITMHVVLRPSLPD 97 (108)
Q Consensus 83 ~~~tvhlv~~~~~~~ 97 (108)
+|||+..+...+
T Consensus 81 ---~i~lv~~~~~~~ 92 (95)
T 1v86_A 81 ---KIMVVGSTISGP 92 (95)
T ss_dssp ---EEEECCSSCCCC
T ss_pred ---EEEEEeccccCC
Confidence 999998775443
No 74
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.69 E-value=1.4e-16 Score=108.92 Aligned_cols=76 Identities=28% Similarity=0.374 Sum_probs=70.6
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+|+..+|+++. +++++++||++||++|++..+ ++ +++|||+|+|+.|+|+.+|++|+|.+++ +
T Consensus 1 M~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~~g----ip---~~~q~L~~~g~~L~d~~tL~~~~i~~~~------~ 66 (152)
T 3b08_A 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (152)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTSBTGGGTCCTTC------E
T ss_pred CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHHHHC----cC---hHHeEEEECCeECcCcccHHHhccCCCC------e
Confidence 47899999999988 999999999999999999998 78 8999999999999999999999999997 9
Q ss_pred EEEEecCCCC
Q 033923 87 MHVVLRPSLP 96 (108)
Q Consensus 87 vhlv~~~~~~ 96 (108)
+|++.+..++
T Consensus 67 l~l~~~~~~~ 76 (152)
T 3b08_A 67 LHLVLRLRGG 76 (152)
T ss_dssp EEEEECCTTC
T ss_pred eEEEeecccc
Confidence 9999987654
No 75
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.68 E-value=2.1e-16 Score=101.56 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=62.7
Q ss_pred EEEEEEeC--CCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEE-------cCcccCCCCcccccCCCC
Q 033923 7 IELKFRLA--DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH-------AGKILEDNMTIAESRLPV 77 (108)
Q Consensus 7 i~i~~r~~--~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy-------~Gk~L~D~~tL~~~~i~~ 77 (108)
+.|.|... .....+ .++++++||.+||++|+...| +| +++||||| .|++|+|+.+|++|+|++
T Consensus 3 V~v~iths~~~~~~~E-~r~~~s~TI~~lK~ki~~~~G----ip---~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~ 74 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPE-KRYGLAQTIESIKENVFTHFA----TP---PEYMQLQLIDDRGITIEKNMANDKQLGYYQCRD 74 (86)
T ss_dssp EEEEEEETTCSCCEEE-EEEETTSBHHHHHHHHHTTSC----CC---GGGEEEEEECTTSCEEESSCCTTSBGGGGTCCT
T ss_pred EEEEEEEcCCCCeEEE-EEcCccCcHHHHHHHHHHHHC----CC---HHHEEEEEecCCCCceeeEcCCCCCHHHCCCCC
Confidence 45555543 333444 999999999999999999999 88 99999997 699999999999999999
Q ss_pred CCCCCcceEEEEEecCC
Q 033923 78 VELPGTAITMHVVLRPS 94 (108)
Q Consensus 78 ~~~~~~~~tvhlv~~~~ 94 (108)
|. ++||+-..+
T Consensus 75 g~------~ihlvd~~P 85 (86)
T 4b6w_A 75 EF------VIHVVDLQP 85 (86)
T ss_dssp TC------EEEEEECCC
T ss_pred CC------EEEEEeCCC
Confidence 97 999997654
No 76
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.67 E-value=2.8e-16 Score=102.71 Aligned_cols=74 Identities=16% Similarity=0.131 Sum_probs=65.3
Q ss_pred CCceEEEEEEeCCCC--eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEc--Cc----ccCCCCcccccC
Q 033923 3 GEDLIELKFRLADGA--DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA--GK----ILEDNMTIAESR 74 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~--~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~--Gk----~L~D~~tL~~~~ 74 (108)
....|.|+|+...+. .++ +++++++||++||++|+...| +| +++|||+|. |+ +++|+.+|++|+
T Consensus 12 ~~~~v~l~It~s~~~~~~~~-~~v~~~~TV~~LK~kI~~~~G----iP---~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~ 83 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFE-VKLAKDLTVAQLKTKLEILTG----GC---AGTMKVQVFKGDTCVSTMDNNDAQLGYYA 83 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEE-EEEETTCBHHHHHHHHHHHHC----SC---TTTEEEEEEETTEEEEECCCTTSBHHHHC
T ss_pred CCCeEEEEEEECCCCceEEE-EEeCccCHHHHHHHHHHHHHC----cC---HHHeEEEEecCCcccceeCCCCCCHhHCC
Confidence 467889999987664 676 999999999999999999999 88 999999998 45 359999999999
Q ss_pred CCCCCCCCcceEEEEE
Q 033923 75 LPVVELPGTAITMHVV 90 (108)
Q Consensus 75 i~~~~~~~~~~tvhlv 90 (108)
|++|+ +|||+
T Consensus 84 i~~gs------tihlv 93 (95)
T 2kjr_A 84 NSDGL------RLHVV 93 (95)
T ss_dssp CSSSC------EEEEE
T ss_pred cCCCC------EEEEE
Confidence 99997 99987
No 77
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.66 E-value=2.6e-16 Score=123.96 Aligned_cols=85 Identities=25% Similarity=0.364 Sum_probs=72.1
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~ 82 (108)
+...++|+||..+|+++. ++|++++||.+||++|+..++.+. ++ +++|||||+||+|+|+.+|++|+|.+++
T Consensus 4 ~~~~M~I~VKtl~Gk~~~-leV~~~~TV~~LK~~I~~~~~~~g-ip---~~~QrLiy~GK~L~D~~tL~dygI~~gs--- 75 (368)
T 1oqy_A 4 GSSAVTITLKTLQQQTFK-IRMEPDETVKVLKEKIEAEKGRDA-FP---VAGQKLIYAGKILSDDVPIRDYRIDEKN--- 75 (368)
T ss_dssp --CCCCEEEEETTTEEEE-ECCCTTCBHHHHHHHHHHHTCSSS-CC---STEEEEESSSSEECSSSBTTTTCCCTTS---
T ss_pred CCceEEEEEEeCCCCEEE-EEeCCCChHHHHHHHHHHHhCcCC-CC---hhheEEEECCeecCCcCCHHHcCCCCCC---
Confidence 567799999999999998 999999999999999999643211 67 8999999999999999999999999987
Q ss_pred cceEEEEEecCCCCC
Q 033923 83 TAITMHVVLRPSLPD 97 (108)
Q Consensus 83 ~~~tvhlv~~~~~~~ 97 (108)
+.+|++.+++++.
T Consensus 76 --tIv~lv~k~~~~~ 88 (368)
T 1oqy_A 76 --FVVVMVTKTKAGQ 88 (368)
T ss_dssp --CEEEEEECCCSSS
T ss_pred --EEEEEEecCCCCC
Confidence 3458998887654
No 78
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.65 E-value=5.5e-16 Score=101.77 Aligned_cols=77 Identities=21% Similarity=0.237 Sum_probs=67.1
Q ss_pred CCCceEEEEEEeCCC--CeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCc---c----cCCCCcccc
Q 033923 2 AGEDLIELKFRLADG--ADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK---I----LEDNMTIAE 72 (108)
Q Consensus 2 ~~~~~i~i~~r~~~g--~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk---~----L~D~~tL~~ 72 (108)
.|+..+.|.|..... ..++ +++++++||++||++|+...| +| +++|||||.|+ . ++|+.+|++
T Consensus 10 ~~~~~v~l~It~s~~~~~~~e-~~v~~~~TV~~LK~kIe~~~G----ip---~~~QrLi~~g~~g~~~~~L~~D~~tL~~ 81 (97)
T 2kj6_A 10 HGDDSVHLHITHANLKSFSAD-ARFSPQMSVEAVKEKLWKKCG----TS---VNSMALELYDDSGSKVAVLSDDSRPLGF 81 (97)
T ss_dssp CCCCCEEEEEEETTSSCCCEE-EEECTTCCHHHHHHHHHHHHC----CC---TTSEEEEEECSSSCBCCCSSGGGSCHHH
T ss_pred CCCceEEEEEEECCCCceEEE-EEeCCCChHHHHHHHHHHHHC----cC---HHHeEEEEecCCCcccceecCCcCCHHH
Confidence 367889999988554 3676 999999999999999999999 88 99999999984 3 589999999
Q ss_pred cCCCCCCCCCcceEEEEEec
Q 033923 73 SRLPVVELPGTAITMHVVLR 92 (108)
Q Consensus 73 ~~i~~~~~~~~~~tvhlv~~ 92 (108)
|+|++|+ +|||+-.
T Consensus 82 Y~I~~g~------~Ihlvd~ 95 (97)
T 2kj6_A 82 FSPFDGF------RLHIIDL 95 (97)
T ss_dssp HCCCSCC------EEEEEEC
T ss_pred CCCCCCC------EEEEEeC
Confidence 9999997 9999854
No 79
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.65 E-value=1.7e-17 Score=120.65 Aligned_cols=75 Identities=17% Similarity=0.169 Sum_probs=2.4
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+|++++|+++. ++|++++||.+||++|+...+ +| +++|||||+|+.|+|+.+|+ +++ +
T Consensus 1 MqI~VKtL~Gktit-LeV~~sdTV~~LK~kI~~keG----IP---~~qQRLIf~GK~LeD~~TLs-----~~S------T 61 (189)
T 2xzm_9 1 MQVQVKTLEGETKI-YTLEQGTSVLDLKSQISQDMG----FE---IDMMTLVNNGFIAPNTELVT-----DDV------T 61 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEE-EEECCcChHHHHHHHHHHHhC----cC---hhHEEEEecCeECCCCCccc-----CCC------E
Confidence 57999999999998 999999999999999999998 88 99999999999999999998 555 8
Q ss_pred EEEEecCCCCCCCC
Q 033923 87 MHVVLRPSLPDKKG 100 (108)
Q Consensus 87 vhlv~~~~~~~~~~ 100 (108)
|||+++.+++.++.
T Consensus 62 LhLvlRLrGG~~kr 75 (189)
T 2xzm_9 62 YYLSLKLLGGKKKK 75 (189)
T ss_dssp ----------CCCC
T ss_pred EEEEEecCCCcccc
Confidence 99999999887653
No 80
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.63 E-value=8.5e-16 Score=118.68 Aligned_cols=77 Identities=27% Similarity=0.386 Sum_probs=69.9
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~ 83 (108)
...++|+||..+|+++. +++++++||.+||++|++..+ ++ +++|||+|+||.|+|+.+|++|+|.+++
T Consensus 231 ~~~MqI~VKtl~Gk~~~-leV~~s~TV~dLK~kI~~~~G----Ip---~~~QRLi~~Gk~L~D~~TLsdygI~~gs---- 298 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES---- 298 (307)
T ss_dssp CCCEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGCEEEETTEECCTTSBTGGGTCCTTC----
T ss_pred CCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHC----cC---hHHEEEEeCCeecCCCCCHHHcCCCCCC----
Confidence 45789999999999997 999999999999999999998 88 9999999999999999999999999997
Q ss_pred ceEEEEEecCC
Q 033923 84 AITMHVVLRPS 94 (108)
Q Consensus 84 ~~tvhlv~~~~ 94 (108)
+|||++|.+
T Consensus 299 --tL~LvlRLr 307 (307)
T 3ai5_A 299 --TLHLVLRLR 307 (307)
T ss_dssp --EEEEEC---
T ss_pred --EEEEEEeCC
Confidence 999998863
No 81
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=96.77 Aligned_cols=71 Identities=18% Similarity=0.089 Sum_probs=61.6
Q ss_pred eEEEEEEeCCCCeee-ee-EeCCcchHHHHHHHHHhh-CCCCCcCCCCCCCceEEEEc--CcccCCCCcccccCCCCCCC
Q 033923 6 LIELKFRLADGADIG-PS-KFSPTTTVASLKEKIISR-WPKEKENGPKTVNNVQLIHA--GKILEDNMTIAESRLPVVEL 80 (108)
Q Consensus 6 ~i~i~~r~~~g~~~~-~l-~v~~~~TV~~LK~~I~~~-~~~~~~i~p~~~~~qRLIy~--Gk~L~D~~tL~~~~i~~~~~ 80 (108)
.++|+|+...|+.+. .+ ++++++||.+||++|++. .+ ++ +++|||+|. ||.|+|+.+|++|+|.+++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~----i~---~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~s- 81 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQ----WY---PARQSLRLDPKGKSLKDEDVLQKLPVGTTA- 81 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSS----SC---TTTCCEESSTTSCCCCTTCBTTTSSCCSEE-
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcC----CC---hHHeEEEecCCCcCcCCCCCHHHcCCCCCC-
Confidence 489999999887642 37 999999999999999995 55 77 899999977 9999999999999999886
Q ss_pred CCcceEEEE
Q 033923 81 PGTAITMHV 89 (108)
Q Consensus 81 ~~~~~tvhl 89 (108)
++|+
T Consensus 82 -----tl~~ 85 (88)
T 2dzj_A 82 -----TLYF 85 (88)
T ss_dssp -----EEEE
T ss_pred -----EEEE
Confidence 7765
No 82
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.59 E-value=5.1e-15 Score=98.06 Aligned_cols=79 Identities=20% Similarity=0.225 Sum_probs=69.5
Q ss_pred CCceEEEEEEeCCCCeeeeeEeC-CcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCc-----------c----cCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFS-PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK-----------I----LED 66 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~-~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk-----------~----L~D 66 (108)
+...+.|+||..+|+. . ++++ +++||.+||++|++..+ ++ +++|||+|.|+ . ++|
T Consensus 4 ~~~~M~irvrs~~G~~-~-v~v~~~~~Tv~~LK~kI~~~~g----ip---~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d 74 (107)
T 1wf9_A 4 GSSGTMLRVRSRDGLE-R-VSVDGPHITVSQLKTLIQDQLQ----IP---IHNQTLSTNRNLLLAKSPSDFLAFTDMADP 74 (107)
T ss_dssp SCCCEEEEEECSSCEE-E-EEECCTTSBHHHHHHHHHHHSC----CC---TTTCCCBSSGGGGTCCSHHHHTTCCSSCCT
T ss_pred CCCeEEEEEECCCCCE-E-EEECCCCCcHHHHHHHHHHHhC----cC---cccCEEEECCccccccCccccccccccCCC
Confidence 4456889999999975 5 8999 99999999999999999 88 89999999998 4 589
Q ss_pred CCcccccCCCCCCCCCcceEEEEEecCCCC
Q 033923 67 NMTIAESRLPVVELPGTAITMHVVLRPSLP 96 (108)
Q Consensus 67 ~~tL~~~~i~~~~~~~~~~tvhlv~~~~~~ 96 (108)
+.+|++|+|.+|+ +|||+......
T Consensus 75 ~~tL~~~gi~~G~------~L~l~~~~~~~ 98 (107)
T 1wf9_A 75 NLRISSLNLAHGS------MVYLAYEGERT 98 (107)
T ss_dssp TCBGGGTCCCTTC------EEECCCSSCCC
T ss_pred CCCHHHCCCCCCC------EEEEEeCCCCc
Confidence 9999999999998 99999876443
No 83
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=7.3e-15 Score=95.75 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=74.9
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~ 82 (108)
..+.|+|+|+..+|+.+. +.+.+++++..|++.++++.+ ++ ++++||+|.|+.|.+++|+++|++.+++
T Consensus 4 ~~~~i~ikVk~~~g~~i~-~~v~~~t~l~kl~~~y~~~~g----i~---~~~~rf~FdG~~l~~~~Tp~dl~medgD--- 72 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQG----LS---MRQIRFRFDGQPINETDTPAQLEMEDED--- 72 (94)
T ss_dssp --CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTCCTTTTTCCTTC---
T ss_pred CCCeEEEEEECCCCCEEE-EEECCCCHHHHHHHHHHHHhC----CC---cccEEEEECCEEcCCCCCHHHcCCCCCC---
Confidence 467899999999999998 999999999999999999999 77 8999999999999999999999999998
Q ss_pred cceEEEEEecCCCCC
Q 033923 83 TAITMHVVLRPSLPD 97 (108)
Q Consensus 83 ~~~tvhlv~~~~~~~ 97 (108)
+||++.+..++.
T Consensus 73 ---~Idv~~~~~GG~ 84 (94)
T 2io1_B 73 ---TIDVFQQQTGGV 84 (94)
T ss_dssp ---EEEEEECCEESC
T ss_pred ---EEEEEEeccCCC
Confidence 999999988873
No 84
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=7.8e-15 Score=96.84 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=64.9
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEE--cCcccCCCCcccccCCCCCCCCCcc
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH--AGKILEDNMTIAESRLPVVELPGTA 84 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy--~Gk~L~D~~tL~~~~i~~~~~~~~~ 84 (108)
+.+++....|+++. +++++++||++||++|++..+ +| +++|||+| .|+ |+|+.+|++|+|+.++
T Consensus 9 m~~~~vk~~Gk~~~-v~v~~~~TV~~LK~~I~~~tg----Ip---p~~QkLi~~~~gk-L~D~~tLs~~~I~~gs----- 74 (100)
T 2dzm_A 9 MLDFRVEYRDRNVD-VVLEDTCTVGEIKQILENELQ----IP---VSKMLLKGWKTGD-VEDSTVLKSLHLPKNN----- 74 (100)
T ss_dssp EEEEEEECSSCEEE-EEEETTSBHHHHHHHHHHHHC----CC---TTTCCEECCSSSC-CCTTSBHHHHCCCSEE-----
T ss_pred eEEEEEEeCCeEEE-EEECCCCcHHHHHHHHHHHHC----CC---hhHeEEEccCCCC-CCCcCCHHHcCCCCCC-----
Confidence 34444456888987 999999999999999999999 88 89999997 676 9999999999999886
Q ss_pred eEEEEEecCCCC
Q 033923 85 ITMHVVLRPSLP 96 (108)
Q Consensus 85 ~tvhlv~~~~~~ 96 (108)
+|||+......
T Consensus 75 -tL~lvl~~~~~ 85 (100)
T 2dzm_A 75 -SLYVLTPDLPP 85 (100)
T ss_dssp -EEEECCSSSCC
T ss_pred -EEEEEecCCCC
Confidence 99999887553
No 85
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=3.1e-14 Score=92.17 Aligned_cols=75 Identities=13% Similarity=0.098 Sum_probs=63.8
Q ss_pred ceEEEEEEeCCCC-eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC---c----ccCCCCcccccCCC
Q 033923 5 DLIELKFRLADGA-DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG---K----ILEDNMTIAESRLP 76 (108)
Q Consensus 5 ~~i~i~~r~~~g~-~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G---k----~L~D~~tL~~~~i~ 76 (108)
..+.|+|+..... .++ +++++++||.+||++|+...+ +| +++|||+|.| + +++|+.+|++|+|.
T Consensus 6 ~~v~l~I~~~~~~~~~~-~~v~~~~TV~~lK~ki~~~~g----ip---~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~ 77 (95)
T 1v6e_A 6 SGVMVFISSSLNSFRSE-KRYSRSLTIAEFKCKLELVVG----SP---ASCMELELYGADDKFYSKLDQEDALLGSYPVD 77 (95)
T ss_dssp CCEEEEEEETTSSSCEE-EEECTTSBHHHHHHHHHHHTC----SC---TTTCBCEEECSSSCEEEECCCSSSBTTSSSCC
T ss_pred cEEEEEEEECCCCeeEE-EEcCccCHHHHHHHHHHHHHC----CC---HHHeEEEEeCCCCccccccCCCcCCHhHCCCC
Confidence 3578888775443 566 999999999999999999999 88 9999999987 4 36899999999999
Q ss_pred CCCCCCcceEEEEEecC
Q 033923 77 VVELPGTAITMHVVLRP 93 (108)
Q Consensus 77 ~~~~~~~~~tvhlv~~~ 93 (108)
+++ ++||+-..
T Consensus 78 ~g~------~l~v~d~~ 88 (95)
T 1v6e_A 78 DGC------RIHVIDHS 88 (95)
T ss_dssp TTC------EEEEBCCS
T ss_pred CCC------EEEEEECC
Confidence 997 99998643
No 86
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=5.7e-14 Score=91.12 Aligned_cols=83 Identities=18% Similarity=0.172 Sum_probs=76.1
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~ 83 (108)
.+.+.|+|+..+|+.+. |.+.+++++..|++...++.+ ++ ++++||+|.|+.|.+++|+++|++.+++
T Consensus 3 ~~~i~ikVk~~~g~~v~-~~vk~~t~l~kl~~~y~~~~g----i~---~~~~rf~FdG~~l~~~~Tp~dl~medgD---- 70 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQG----LS---MRQIRFRFDGQPINETDTPAQLEMEDED---- 70 (91)
T ss_dssp -CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHHHHTT----CC---STTEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred CCeEEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHhC----CC---cccEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 46799999999999998 999999999999999999998 77 8999999999999999999999999998
Q ss_pred ceEEEEEecCCCCCCCC
Q 033923 84 AITMHVVLRPSLPDKKG 100 (108)
Q Consensus 84 ~~tvhlv~~~~~~~~~~ 100 (108)
+|+++.+..++..-+
T Consensus 71 --~Idv~~~q~gg~~~~ 85 (91)
T 2io0_B 71 --TIDVFQQQTGGVYLE 85 (91)
T ss_dssp --EEEEEECCCCCCCCC
T ss_pred --EEEEEEeccCCcccc
Confidence 999999998875443
No 87
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.52 E-value=7.7e-14 Score=94.34 Aligned_cols=74 Identities=11% Similarity=0.151 Sum_probs=63.5
Q ss_pred eEEEEEEeCCCC-eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC---c----ccCCCCcccccCCCC
Q 033923 6 LIELKFRLADGA-DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG---K----ILEDNMTIAESRLPV 77 (108)
Q Consensus 6 ~i~i~~r~~~g~-~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G---k----~L~D~~tL~~~~i~~ 77 (108)
.+.|+|+...+. .++ +++++++||.+||++|+...| +| +++|||+|.| + +++|+.+|++|+|.+
T Consensus 6 ~v~l~V~~~~~~~~~e-~~v~~~~TV~~lK~ki~~~~G----ip---~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~ 77 (122)
T 1t0y_A 6 VYDLEITTNATDFPME-KKYPAGMSLNDLKKKLELVVG----TT---VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRD 77 (122)
T ss_dssp EEEEEEEESSCCSCEE-EEEETTSBHHHHHHHHHHHHC----CC---TTTEEEEEECSSSSEEEECCCCSSBTTTTTCCS
T ss_pred EEEEEEEECCCCccEE-EEeCCCCcHHHHHHHHHHHhC----CC---HHHeEEEEecCCCccccccCCCcCCHHHCCCCC
Confidence 678888775543 566 999999999999999999999 88 9999999988 4 358999999999999
Q ss_pred CCCCCcceEEEEEecC
Q 033923 78 VELPGTAITMHVVLRP 93 (108)
Q Consensus 78 ~~~~~~~~tvhlv~~~ 93 (108)
|+ +|||+...
T Consensus 78 g~------~ihvvd~~ 87 (122)
T 1t0y_A 78 GY------RIHAVDVT 87 (122)
T ss_dssp SE------EEEEEECT
T ss_pred CC------EEEEEeCC
Confidence 96 99999744
No 88
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.49 E-value=4.4e-14 Score=109.36 Aligned_cols=78 Identities=17% Similarity=0.186 Sum_probs=68.1
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE---EcCcccCCCCcccccCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI---HAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI---y~Gk~L~D~~tL~~~~i~~~~ 79 (108)
+++.+.|+|+. .|+.+. +++++++||++||++|++..+ +| +++|||| |+|++|.|+.+|++|+|++|+
T Consensus 2 ~~~~i~i~Vk~-~g~~~~-v~v~~~~Tv~~lK~~I~~~tg----Vp---p~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~ 72 (320)
T 3shq_A 2 EVKEVVVIVKW-SGKEYP-VDLTDQDTVEVLRHEIFRKTQ----VR---PERQKLLNLKYKGKTAADNVKISALELKPNF 72 (320)
T ss_dssp --CEEEEEEEE-TTEEEE-EEEETTSBHHHHHHHHHHHHC----CC---GGGCEETTCBSSSSBCCTTSBTTSSCCC--C
T ss_pred CCceEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHHHHC----cC---HHHeEEeecccCCcccCccccHHHcCCCCCC
Confidence 57789999996 688887 999999999999999999999 88 9999999 899999999999999999997
Q ss_pred CCCcceEEEEEecCCC
Q 033923 80 LPGTAITMHVVLRPSL 95 (108)
Q Consensus 80 ~~~~~~tvhlv~~~~~ 95 (108)
+|||+..+..
T Consensus 73 ------~l~L~gs~~~ 82 (320)
T 3shq_A 73 ------KLMMVGSTEA 82 (320)
T ss_dssp ------EEEEECCCC-
T ss_pred ------EEEEEccchh
Confidence 9999987765
No 89
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.49 E-value=1.8e-13 Score=88.81 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=71.6
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~ 83 (108)
.+.|.|+|+..+|+.+. |.+.+++++..|++.++++.+ ++ ++.+||+|.|+.|.++.|+++|++.+++
T Consensus 15 ~~~i~ikV~~~~g~~i~-~~v~~~t~l~kl~~~y~~~~g----i~---~~~~rf~fdG~~l~~~~Tp~dl~medgD---- 82 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQG----LS---MRQIRFRFDGQPINETDTPAQLEMEDED---- 82 (93)
T ss_dssp CCEEEEEEECTTSCEEE-EEEETTSCHHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred CCeEEEEEECCCCCEEE-EEEccCCHHHHHHHHHHHHhC----CC---ccceEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 46899999999999987 999999999999999999999 77 8999999999999999999999999998
Q ss_pred ceEEEEEecCCCC
Q 033923 84 AITMHVVLRPSLP 96 (108)
Q Consensus 84 ~~tvhlv~~~~~~ 96 (108)
+||++.+..++
T Consensus 83 --~Idv~~~q~GG 93 (93)
T 2d07_B 83 --TIDVFQQQTGG 93 (93)
T ss_dssp --EEEEEECC---
T ss_pred --EEEEEeeccCC
Confidence 99999988763
No 90
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.48 E-value=1.9e-13 Score=90.73 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=75.3
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~ 83 (108)
.+.|.|+|+..+|+.+. |.+.+++++..|++.+.++.+ ++ ++.+||+|.|+.|.++.|+++|++.+++
T Consensus 22 ~~~I~IkVk~~~g~~i~-~kVk~~t~l~kL~~~y~ek~g----i~---~~~~rf~FdG~~l~~~~Tp~dl~medgD---- 89 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQG----LS---MRQIRFRFDGQPINETDTPAQLEMEDED---- 89 (104)
T ss_dssp SCCEEEEEECSSSCEEE-EEECTTSCHHHHHHHHHHHHT----CC---TTTSCEESSSSBCCTTSCTTTTTCCTTE----
T ss_pred CCeEEEEEECCCCCEEE-EEEcCCChHHHHHHHHHHHhC----CC---cceEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 46899999999999998 999999999999999999998 77 8899999999999999999999999998
Q ss_pred ceEEEEEecCCCCCC
Q 033923 84 AITMHVVLRPSLPDK 98 (108)
Q Consensus 84 ~~tvhlv~~~~~~~~ 98 (108)
+||++.+..++..
T Consensus 90 --~Idv~~~q~GG~~ 102 (104)
T 1wz0_A 90 --TIDVFQQQTSGPS 102 (104)
T ss_dssp --EEEECCCCCCCSS
T ss_pred --EEEEEEeccCCCC
Confidence 9999999888754
No 91
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.44 E-value=4.7e-13 Score=82.79 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=66.1
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
++|+|+..+|+.+. +.+.+++++..|++...++.+ ++ ++++||+|.|+.|.+++|++++++.+|+ +
T Consensus 2 i~lkV~~~~g~~v~-~~v~~~t~l~kl~~~y~~~~g----i~---~~~~rf~fdG~~l~~~~Tp~~l~medgD------~ 67 (72)
T 1wm3_A 2 INLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQG----LS---MRQIRFRFDGQPINETDTPAQLEMEDED------T 67 (72)
T ss_dssp EEEEEECTTSCEEE-EEECTTSCTHHHHHHHHHHHT----CC---TTTCEEEETTEECCTTCCTTTTTCCTTE------E
T ss_pred EEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHhC----CC---cceEEEEECCEEcCCCCCHHHcCCCCCC------E
Confidence 78999999999998 999999999999999999988 77 8999999999999999999999999998 8
Q ss_pred EEEE
Q 033923 87 MHVV 90 (108)
Q Consensus 87 vhlv 90 (108)
+|+.
T Consensus 68 Idv~ 71 (72)
T 1wm3_A 68 IDVF 71 (72)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 92
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.43 E-value=7.8e-13 Score=83.35 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=69.3
Q ss_pred CCCceEEEEEEeCCCC-eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCC
Q 033923 2 AGEDLIELKFRLADGA-DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL 80 (108)
Q Consensus 2 ~~~~~i~i~~r~~~g~-~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~ 80 (108)
++.+.+.|+|+..+|+ .+. +.+.+++++..|++...++.+ ++ ++++||+|.|+.|.++.|+++|++.+++
T Consensus 3 ~~~~~i~ikV~~~~g~~~i~-~~i~~~t~l~kl~~~y~~~~g----i~---~~~~rf~fdG~~l~~~~Tp~~l~medgD- 73 (79)
T 3a4r_A 3 LGSQELRLRVQGKEKHQMLE-ISLSPDSPLKVLMSHYEEAMG----LS---GHKLSFFFDGTKLSGKELPADLGLESGD- 73 (79)
T ss_dssp TCCCCEEEEEECSSTTCEEE-EEECTTSCHHHHHHHHHHHHT----CT---TCCCEEEETTEECCSCCCHHHHTCCTTC-
T ss_pred CCCCEEEEEEEeCCCCEEEE-EEECCCChHHHHHHHHHHHhC----CC---cccEEEEECCEEcCCCCCHHHcCCCCCC-
Confidence 4667899999999996 887 999999999999999999998 77 8899999999999999999999999998
Q ss_pred CCcceEEEEE
Q 033923 81 PGTAITMHVV 90 (108)
Q Consensus 81 ~~~~~tvhlv 90 (108)
+||+.
T Consensus 74 -----~Idv~ 78 (79)
T 3a4r_A 74 -----LIEVW 78 (79)
T ss_dssp -----EEEEE
T ss_pred -----EEEEe
Confidence 88875
No 93
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.42 E-value=4.4e-13 Score=89.84 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=73.8
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~ 83 (108)
.+.|.|+|+..+|+.+. |.+.+++++..|++...++.+ ++ ++++||+|.|+.|.++.|+++|++.+++
T Consensus 24 ~~~I~IkVk~~~g~~i~-fkVk~~t~l~kL~~ay~ek~g----i~---~~~~rfiFdG~~L~~~~Tp~dl~mEDgD---- 91 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMF-FRIKSRTALKKLIDTYCKKQG----IS---RNSVRFLFDGTPIDETKTPEELGMEDDD---- 91 (110)
T ss_dssp CCCEEEEEEETTSCCEE-EEECTTSSHHHHHHHHHHHHT----CC---SSSCEEESSSCBCCSSSHHHHHHCSSEE----
T ss_pred CCeEEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHhC----CC---cccEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 35699999999999998 999999999999999999988 77 8899999999999999999999999998
Q ss_pred ceEEEEEecCCCC
Q 033923 84 AITMHVVLRPSLP 96 (108)
Q Consensus 84 ~~tvhlv~~~~~~ 96 (108)
+||++....++
T Consensus 92 --~Idv~~~q~Gg 102 (110)
T 2k8h_A 92 --VIDAMVEQTGG 102 (110)
T ss_dssp --EEEEECCCCCC
T ss_pred --EEEEEEcccCc
Confidence 99999998875
No 94
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.41 E-value=9.7e-13 Score=87.66 Aligned_cols=79 Identities=16% Similarity=0.142 Sum_probs=71.1
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~ 82 (108)
+.+.|+|+|+. +|+.+. |.+.+++++..|++...++.+ ++ ++.+||+|.|+.|.++.|.++|++.+++
T Consensus 28 ~~~~I~IkV~~-~g~~i~-fkIk~tt~l~kL~~ay~ek~g----i~---~~~~rF~FdG~rl~~~~Tp~dl~medgD--- 95 (106)
T 2eke_C 28 PETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQG----KE---MDSLRFLYDGIRIQADQTPEDLDMEDND--- 95 (106)
T ss_dssp CCSEEEEEEEC-SSCEEE-EEEETTSCTHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTCCTTTTTCCTTE---
T ss_pred CCCeEEEEEec-CCcEEE-EEeCCCCHHHHHHHHHHHHhC----CC---cccEEEEECCeEcCCCCCHHHcCCCCCC---
Confidence 34679999999 999998 999999999999999999998 77 8999999999999999999999999998
Q ss_pred cceEEEEEecCCCC
Q 033923 83 TAITMHVVLRPSLP 96 (108)
Q Consensus 83 ~~~tvhlv~~~~~~ 96 (108)
+|+++.+..++
T Consensus 96 ---~Idv~~~q~GG 106 (106)
T 2eke_C 96 ---IIEAHREQIGG 106 (106)
T ss_dssp ---EEEEEECC---
T ss_pred ---EEEEEeecccC
Confidence 99999988763
No 95
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.41 E-value=6e-13 Score=84.55 Aligned_cols=72 Identities=11% Similarity=0.176 Sum_probs=62.3
Q ss_pred EEEEEEeCCCCeeeeeE-eCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC--cccC---CCCcccccCCCCCCC
Q 033923 7 IELKFRLADGADIGPSK-FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG--KILE---DNMTIAESRLPVVEL 80 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~-v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G--k~L~---D~~tL~~~~i~~~~~ 80 (108)
+.|+||+.+|+.+ +. +++++||.+||++|++..+ ++ +++|||+|++ |.|. |+.+|++|||.+|+
T Consensus 1 m~i~vr~~~G~~~--v~~l~~~~Tv~~Lk~~I~~~~g----i~---~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~- 70 (86)
T 2kzr_A 1 WRVRCKAKGGTHL--LQGLSSRTRLRELQGQIAAITG----IA---PGSQRILVGYPPECLDLSDRDITLGDLPIQSGD- 70 (86)
T ss_dssp CCEEEEETTEEEE--ECSCCTTCBHHHHHHHHHHHTC----CC---TTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTC-
T ss_pred CEEEEEcCCCCEE--eeecCCCCCHHHHHHHHHHHhC----CC---ccceEEEeCCCCcccccCCCCCCHHHcCCCCCC-
Confidence 4689999999653 67 9999999999999999998 77 8999999974 8874 68899999999997
Q ss_pred CCcceEEEEEecC
Q 033923 81 PGTAITMHVVLRP 93 (108)
Q Consensus 81 ~~~~~tvhlv~~~ 93 (108)
++||.-..
T Consensus 71 -----~l~v~~~~ 78 (86)
T 2kzr_A 71 -----MLIVEEDQ 78 (86)
T ss_dssp -----EEECCCCS
T ss_pred -----EEEEEeCC
Confidence 89887664
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.29 E-value=4.1e-11 Score=77.51 Aligned_cols=76 Identities=16% Similarity=0.146 Sum_probs=64.1
Q ss_pred CceEEEEEEe---CCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC------cc-c-CCCCcccc
Q 033923 4 EDLIELKFRL---ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG------KI-L-EDNMTIAE 72 (108)
Q Consensus 4 ~~~i~i~~r~---~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G------k~-L-~D~~tL~~ 72 (108)
...+.|.|+. .+|..++ ..+++++||++||++|+...+ ++ +..|||+|.+ .+ | +|+.+|+.
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e-~~l~~~~TV~~LK~~i~~~~g----ip---~~~q~L~~~~~~~~~~~~~L~~d~~~L~~ 78 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILE-KQLPDSMTVQKVKGLLSRLLK----VP---VSELLLSYESSKMPGREIELENDLQPLQF 78 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEE-EEEETTSBHHHHHHHHHTTTT----CC---TTTCEEEEECTTSCSCEEECCCSSSBSGG
T ss_pred CccEEEEEEecCCCCCcEEE-EECCCCCCHHHHHHHHHHHHC----CC---hhHeEEEEEcCCCCceeeccCCCcccHhh
Confidence 4568888886 3666776 999999999999999999999 88 8999999983 22 4 67899999
Q ss_pred cCCCCCCCCCcceEEEEEecC
Q 033923 73 SRLPVVELPGTAITMHVVLRP 93 (108)
Q Consensus 73 ~~i~~~~~~~~~~tvhlv~~~ 93 (108)
|++.+|+ +|||+...
T Consensus 79 y~i~~G~------~I~V~d~~ 93 (97)
T 1wjn_A 79 YSVENGD------CLLVRWSG 93 (97)
T ss_dssp GTCCTTC------EEEEECCS
T ss_pred cCCCCCC------EEEEEecC
Confidence 9999998 99998854
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.15 E-value=3e-10 Score=76.65 Aligned_cols=78 Identities=24% Similarity=0.273 Sum_probs=71.1
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~ 82 (108)
+.+.|.|+|+..+|..+. |.+.+++++..|++...++.+ ++ ++.+||+|.|+.|.++.|.+++++.+++
T Consensus 37 ~~~~I~LKV~~qdg~ev~-fkIk~tt~L~KLm~aY~er~G----l~---~~~irFlFDG~rI~~~~TP~dL~MEDgD--- 105 (115)
T 3kyd_D 37 EGEYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQRQG----VP---MNSLRFLFEGQRIADNHTPKELGMEEED--- 105 (115)
T ss_dssp --CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHHHHHT----CC---TTSEEEEETTEECCTTCCTTTTTCCTTC---
T ss_pred CCCeEEEEEEcCCCCEEE-EEEccCChHHHHHHHHHHHhC----CC---hhhEEEEECCeECCCCCCHHHcCCCCCC---
Confidence 357899999999999987 999999999999999999998 77 8999999999999999999999999999
Q ss_pred cceEEEEEecCC
Q 033923 83 TAITMHVVLRPS 94 (108)
Q Consensus 83 ~~~tvhlv~~~~ 94 (108)
+|++..+..
T Consensus 106 ---~IdV~~~Q~ 114 (115)
T 3kyd_D 106 ---VIEVYQEQC 114 (115)
T ss_dssp ---EEEEEECCC
T ss_pred ---EEEEEeecc
Confidence 899988764
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.07 E-value=8.8e-10 Score=80.55 Aligned_cols=82 Identities=16% Similarity=0.140 Sum_probs=74.3
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~ 83 (108)
.+.|+|+|+. +|..+. |.+.+++++..|++...++.| ++ ++++||+|.|+.|.+++|.+++++.+|+
T Consensus 27 ~~~I~LkV~~-~g~~v~-fkIk~~t~l~kL~~ay~er~G----i~---~~~~RF~FdG~rI~~~~TP~dL~MEdgD---- 93 (200)
T 3pge_A 27 ETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQG----KE---MDSLRFLYDGIRIQADQTPEDLDMEDND---- 93 (200)
T ss_dssp CCCEEEEEEC-SSCEEE-EEECTTSCTHHHHHHHHHHHS----SC---GGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred CCeEEEEEec-CCCEEE-EEEecCCHHHHHHHHHHHHhC----CC---hhhEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 4568999974 899887 999999999999999999999 77 8999999999999999999999999998
Q ss_pred ceEEEEEecCCCCCCCC
Q 033923 84 AITMHVVLRPSLPDKKG 100 (108)
Q Consensus 84 ~~tvhlv~~~~~~~~~~ 100 (108)
+|+++.+..++.+.+
T Consensus 94 --~Idv~~~q~gg~kd~ 108 (200)
T 3pge_A 94 --IIEAHREQIGGGGET 108 (200)
T ss_dssp --EEEEEECCSCCC-CC
T ss_pred --EEEEEeccCcCcCce
Confidence 999999998886543
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.92 E-value=3.8e-09 Score=77.14 Aligned_cols=80 Identities=16% Similarity=0.136 Sum_probs=73.4
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~ 83 (108)
.+.|.|+|+ .+|..+. |.+.+++++..|++...++.+ ++ ++.+||+|.|+.|.+++|.+++++.++|
T Consensus 55 ~e~InLKVk-~dG~eV~-FKIKrtTpL~KLmeAYcERqG----L~---~~sIRFLFDGqRI~~ddTPeDLdMEDGD---- 121 (207)
T 3tix_A 55 ETHINLKVS-DGSSEIF-FKIKKTTPLRRLMEAFAKRQG----KE---MDSLTFLYDGIEIQADQTPEDLDMEDND---- 121 (207)
T ss_dssp CCEEEEEEE-CSSCEEE-EEEETTSCTHHHHHHHHHHTT----CC---GGGSCEEETTEECCSSCCTTTTTCCTTE----
T ss_pred CCcEEEEEe-cCCCEEE-EEEccCChHHHHHHHHHHHhC----CC---cccEEEEECCeecCCCCCHHHcCCCCCC----
Confidence 457899997 4899888 999999999999999999999 77 8999999999999999999999999998
Q ss_pred ceEEEEEecCCCCCC
Q 033923 84 AITMHVVLRPSLPDK 98 (108)
Q Consensus 84 ~~tvhlv~~~~~~~~ 98 (108)
+|+++++..++..
T Consensus 122 --tIDV~leQ~GG~~ 134 (207)
T 3tix_A 122 --IIEAHREQIGGLP 134 (207)
T ss_dssp --EEEECCCCCTTGG
T ss_pred --EEEEEEeccCCCc
Confidence 9999999988753
No 100
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.59 E-value=5.6e-09 Score=77.14 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=1.1
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~ 83 (108)
.+.|.|+| ..+|..+. |.+.+++.+..|++...++.| ++ ++.+||+|.|+.|.+++|.+++++.+||
T Consensus 19 ~e~InLKV-~qdGseV~-FKIKrtTpL~KLM~AYcERqG----Ls---~~siRFLFDGqRI~dddTPadL~MEDGD---- 85 (227)
T 3v7o_A 19 ETHINLKV-SDGSSEIF-FKIKKTTPLRRLMEAFAKRQG----KE---MDSLRFLYDGIRIQADQTPEDLDMEDND---- 85 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEE-eCCCCEEE-EEEccCChHHHHHHHHHHHhC----CC---ccceEEEECCEecCCCCCHHHcCCCCCC----
Confidence 45788888 66888887 999999999999999999998 77 8999999999999999999999999999
Q ss_pred ceEEEEEecCCCCC
Q 033923 84 AITMHVVLRPSLPD 97 (108)
Q Consensus 84 ~~tvhlv~~~~~~~ 97 (108)
+|+++.+..++.
T Consensus 86 --tIDV~leQ~GG~ 97 (227)
T 3v7o_A 86 --IIEAHREQIGGL 97 (227)
T ss_dssp ------------CC
T ss_pred --EEEEEecccCCc
Confidence 999999888764
No 101
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.49 E-value=3.9e-07 Score=59.33 Aligned_cols=54 Identities=15% Similarity=0.023 Sum_probs=43.6
Q ss_pred eCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccC--CCCcccccC
Q 033923 13 LADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILE--DNMTIAESR 74 (108)
Q Consensus 13 ~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~--D~~tL~~~~ 74 (108)
+..+..++ +.+.+++||..+|++|+++.| |+ +++|||||.|+.|. .+.....|-
T Consensus 20 ~~~a~~h~-v~I~~~etv~~~ke~V~eqTg----Ip---~~~Q~LL~eg~~l~l~p~~~a~~~p 75 (94)
T 4efo_A 20 LQQMTAHK-IYIHSYNTATIFHELVYKQTK----II---SSNQELIYEGRRLVLEPGRLAQHFP 75 (94)
T ss_dssp TTTTEEEE-EEEETTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEEECCCTTCBGGGSC
T ss_pred cccceEEE-EEeccchHHHHHHHHHHHHhC----CC---HHHHHHHhCCCccccCCCCccccCC
Confidence 45666666 999999999999999999999 88 89999999998664 344444553
No 102
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.47 E-value=1.2e-07 Score=59.72 Aligned_cols=66 Identities=11% Similarity=0.134 Sum_probs=50.7
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcc---c--CCCCcccccCCCCCC
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKI---L--EDNMTIAESRLPVVE 79 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~---L--~D~~tL~~~~i~~~~ 79 (108)
+.+.|+||..+|. .. +++++++|+++|+++|++..+ ++ .+.+.+.++-.. | .++.+|+++||..|+
T Consensus 3 ~~m~lRvrs~~G~-~R-i~v~~~~t~~~L~~~I~~~~~----i~---~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd 73 (80)
T 2pjh_A 3 ESIIIRVQSPDGV-KR-ITATKRETAATFLKKVAKEFG----FQ---NNGFSVYINRNKTGEITASSSKSLHLLKIKHGD 73 (80)
T ss_dssp CCCCCEEECSSEE-EE-CCCCSSCCHHHHHHHHHHHTC----CC---TTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTC
T ss_pred CcEEEEEECCCCC-EE-EEcCCcChHHHHHHHHHHHcC----CC---CCcceEEecCCCCCcccCCCCCCHHHcCCCCCC
Confidence 3477899999994 55 889999999999999999998 55 444444333222 3 477899999999998
No 103
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.47 E-value=1.4e-06 Score=56.83 Aligned_cols=69 Identities=9% Similarity=0.094 Sum_probs=63.1
Q ss_pred CCceEEEEEEeCCCC-eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 3 GEDLIELKFRLADGA-DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~-~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
+.+.|.|+++..+|. .+. |.+.++++...|.+.-.++.+ ++ ++.+||+|.|..|..+.|.+++++.+++
T Consensus 22 ~~~~I~LkV~~~dg~~~v~-fkIk~~t~l~kLm~aY~~~~g----~~---~~~vrF~FDG~rI~~~~TP~dLdMEDgD 91 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLE-VSLSRDSPLKTLMSHYEEAMG----LS---GRKLSFFFDGTKLSGRELPADLGMESGD 91 (97)
T ss_dssp SCSEEEEEEEESSSSCEEE-EEEETTSCHHHHHHHHHHHTT----CS---SSCCEEEETTEECCSCSCHHHHTCCTTE
T ss_pred CCCeEEEEEEcCCCCEEEE-EEECCCChHHHHHHHHHHHHC----CC---cccEEEEECCEEcCCCCCHHHcCCCCCC
Confidence 567899999999995 777 999999999999999999988 66 7899999999999999999999999998
No 104
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.42 E-value=2.5e-06 Score=53.95 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=61.2
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCC-ceEEEEcCcccCCCCcccccCCCCCC
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVN-NVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~-~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
..+.+-+|.....++. +.+.++.+|.+|-..-..+.+ |+ ++ .+||.|-|..|..+.++++|.+.+++
T Consensus 8 ~~~~~~~~~~~~~dl~-f~I~~~t~v~kLi~ayc~~~~----I~---~~~~IrllFDGdRLdp~~tp~DlemeD~D 75 (82)
T 3goe_A 8 KLITLLLRSSKSEDLR-LSIPVDFTVKDLIKRYCTEVK----IS---FHERIRLEFEGEWLDPNDQVQSTELEDED 75 (82)
T ss_dssp CEEEEEEEESSSCCEE-EEEETTSBHHHHHHHHHHHHT----CC---CCTTCEEEETTEECCTTSBGGGSSCCTTC
T ss_pred HHHHHhhhccCCCCeE-EEecCCCCHHHHHHHHHHHcC----CC---cCceEEEEEcCcccCccCChhhhCCcCCc
Confidence 4678888998888888 999999999999988888888 77 66 99999999999999999999999998
No 105
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.35 E-value=2e-06 Score=62.60 Aligned_cols=79 Identities=16% Similarity=0.151 Sum_probs=71.2
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~ 83 (108)
.+.|.|+++. +|+.+. |.+..+++...|++...++.+ ++ ++++||+|.|+.+.+++|..+..+.+++
T Consensus 19 ~~~i~ikv~~-~~~~v~-~~i~~~~~l~kl~~~y~~~~g----~~---~~~~~f~fdG~~i~~~~Tpk~L~~ed~d---- 85 (209)
T 3uf8_A 19 ETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQG----KE---MDSLRFLYDGIRIQADQTPEDLDMEDND---- 85 (209)
T ss_dssp CSEEEEEEEC-SSCEEE-EEEETTSCTHHHHHHHHHHHT----CC---GGGCEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred CCcEEEEEEc-CCCEEE-EEEeeCCHHHHHHHHHHHhhC----CC---hheEEEEECCEeccCCCChHHhhhcccc----
Confidence 5678999986 777777 999999999999999999999 77 9999999999999999999999999998
Q ss_pred ceEEEEEecCCCCC
Q 033923 84 AITMHVVLRPSLPD 97 (108)
Q Consensus 84 ~~tvhlv~~~~~~~ 97 (108)
++.+.....++.
T Consensus 86 --~I~~~~eq~Gg~ 97 (209)
T 3uf8_A 86 --IIEAHREQIGGS 97 (209)
T ss_dssp --EEEEECSCTTCC
T ss_pred --cchhhccccccc
Confidence 888888877743
No 106
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.26 E-value=9.6e-08 Score=75.09 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=0.5
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~ 82 (108)
+.+.|.|+|+. +|..+. |.+.++++...|++...++.+ ++ ++.+|++|.|+.|.+++|.+++++.+|+
T Consensus 18 ~~~~I~LKV~~-~g~~v~-FkIk~~t~l~kLm~aY~~r~G----~~---~~~~rFlFdG~rI~~~~TP~~L~MEDgD--- 85 (360)
T 3ix6_A 18 PETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQG----KE---MDSLRFLYDGIRIQADQTPEDLDMEDND--- 85 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcEEE-EEEecCChHHHHHHHHHHHhC----CC---cceEEEEECCeECCCCCChHHcCCCccc---
Confidence 45678888886 677777 999999999999999999988 67 8999999999999999999999999999
Q ss_pred cceEEEEEecCCCCC
Q 033923 83 TAITMHVVLRPSLPD 97 (108)
Q Consensus 83 ~~~tvhlv~~~~~~~ 97 (108)
+|++..+..++.
T Consensus 86 ---~Idv~~~Q~g~~ 97 (360)
T 3ix6_A 86 ---IIEAHREQIGGM 97 (360)
T ss_dssp --------------C
T ss_pred ---hhhhhhccCchH
Confidence 899998887764
No 107
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=98.13 E-value=2e-05 Score=49.34 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=55.7
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCccc---CCCCcccccCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKIL---EDNMTIAESRLPV 77 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L---~D~~tL~~~~i~~ 77 (108)
.++...|.||+.+|..+. -.|..++||.+|.+-|.. .+ .. ....+|+ |-.|.| +.+.+|.++|+.+
T Consensus 4 ~~~~~~i~iRlpdG~r~~-~~F~~~~tl~~v~~fv~~-~~----~~---~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p 74 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLE-RRFLASNKLQIVFDFVAS-KG----FP---WDEYKLLSTFPRRDVTQLDPNKSLLEVKLFP 74 (84)
T ss_dssp CCCEEEEEEECTTSCEEE-EEEETTSBHHHHHHHHHH-TT----CC---TTTEEEECSSSCCBGGGSCTTSBTTTTTCCS
T ss_pred CCCeEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHH-cC----CC---CCCeEEEeCCCCCCCcCCCCCCCHHHCCCCC
Confidence 467889999999999887 899999999999999987 34 33 6778887 457877 3468999999986
Q ss_pred CC
Q 033923 78 VE 79 (108)
Q Consensus 78 ~~ 79 (108)
..
T Consensus 75 ~a 76 (84)
T 3qx1_A 75 QE 76 (84)
T ss_dssp EE
T ss_pred CC
Confidence 64
No 108
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.10 E-value=3.2e-05 Score=50.34 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=64.8
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~ 83 (108)
.+.|.|+|+ .+|..+. |.+..++....|.+...++.| +. ++.+|++|.|..+.++.|-++.++.+++
T Consensus 19 ~~~IniKV~-~~g~ev~-FkIK~tt~l~KL~~aYc~r~g----v~---~~sirFlfDG~rI~~~~TP~~L~meD~D---- 85 (95)
T 2l76_A 19 PRLFPLKIR-CRADLVR-LPLRMSEPLQSVVDHMATHLG----VS---PSRILLLFGETELSPTATPRTLKLGVAD---- 85 (95)
T ss_dssp CCCEEEEEE-CSSSEEE-EEECSSSCTHHHHHHHHHHHT----SC---GGGEEEEETTEECCTTSCHHHHTCCSSC----
T ss_pred CCeEEEEEE-cCCcEEE-EEEecCChHHHHHHHHHhhcC----CC---hhhEEEEECCcCCCCCCCHhHcCCCCCC----
Confidence 455999999 4788887 999999999999999999988 66 9999999999999999999999999998
Q ss_pred ceEEEEEec
Q 033923 84 AITMHVVLR 92 (108)
Q Consensus 84 ~~tvhlv~~ 92 (108)
++-+++-
T Consensus 86 --iID~~~~ 92 (95)
T 2l76_A 86 --IIDCVVL 92 (95)
T ss_dssp --EEEEEEC
T ss_pred --EEEEEEe
Confidence 5655543
No 109
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=98.01 E-value=7.2e-07 Score=69.69 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~ 82 (108)
.++.|.|+|+. +|..+. |.+..+++...|++...++.+ ++ +.++||+|.|+.|.+++|.+++++.+++
T Consensus 27 ~~~~i~lkv~~-~~~~~~-~~i~~~~~~~~l~~~y~~~~g----~~---~~~~~f~f~G~~i~~~~Tp~~l~med~d--- 94 (389)
T 4da1_A 27 PETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQG----KE---MDSLRFLYDGIRIQADQAPEDLDMEDND--- 94 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEEec-CCcEEE-EEECCCChHHHHHHHHHHHhC----CC---cceEEEEECCEEcCCCCCHHHcCCCCCC---
Confidence 34667888876 777776 999999999999999999998 77 8999999999999999999999999998
Q ss_pred cceEEEEEecCCCCC
Q 033923 83 TAITMHVVLRPSLPD 97 (108)
Q Consensus 83 ~~~tvhlv~~~~~~~ 97 (108)
+|++.....++.
T Consensus 95 ---~i~~~~~q~gg~ 106 (389)
T 4da1_A 95 ---IIEAHREQIGGE 106 (389)
T ss_dssp ---------------
T ss_pred ---Eeeeeecccccc
Confidence 888888887664
No 110
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.97 E-value=4.2e-05 Score=48.37 Aligned_cols=73 Identities=10% Similarity=0.203 Sum_probs=61.8
Q ss_pred CceEEEEEEe--CCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 4 EDLIELKFRL--ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 4 ~~~i~i~~r~--~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
+..+.|++.+ -.|+.+. ++++...||.+|++.+++.++-+ .++.+-.++|..-.|.+|.+++.|++|++.+|+
T Consensus 2 ~~yI~ITidl~~y~~~~~D-LRIP~~~tvK~Li~~l~ea~~l~--~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD 76 (81)
T 2bps_A 2 GSYIDITIDLKHYNGSVFD-LRLSDYHPVKKVIDIAWQAQSVS--MPPREGHWIRVVNKDKVFSGECKLSDCGITNGD 76 (81)
T ss_dssp CCEEEEEEECTTTTCCEEE-EEEETTSBTTHHHHHHHHHSCCC--SCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTC
T ss_pred CcEEEEEEEeeccCCceEE-EECCCchhHHHHHHHHHHHhCCC--cCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCC
Confidence 3567788887 5788888 99999999999999999999843 333332589999999999999999999999998
No 111
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.89 E-value=0.00022 Score=46.90 Aligned_cols=77 Identities=14% Similarity=0.261 Sum_probs=59.1
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCcccC--C-CCcccccCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILE--D-NMTIAESRLPV 77 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L~--D-~~tL~~~~i~~ 77 (108)
.+....|.||+.+|..+. -.|..++||.+|.+-|....+ .. .....|+ |-.|.|. | +.+|.++++.+
T Consensus 10 ~~~~t~IqIRlpdG~rl~-~rF~~~~tl~~v~~fV~~~~~----~~---~~~f~L~t~fPrk~l~~~d~~~TL~elgL~p 81 (109)
T 2dzk_A 10 RSTIARIQFRLPDGSSFT-NQFPSDAPLEEARQFAAQTVG----NT---YGNFSLATMFPRREFTREDYKRRLLDLELAP 81 (109)
T ss_dssp CSCCEEEEEECSSSCEEE-EEECTTSBHHHHHHHHHHHHT----TS---SCSCEEECSSSCCBCCTTTTTSBTGGGTCSS
T ss_pred CCCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhccC----CC---CCceEEEcCCCCcCCcccccCCCHHHCCCCC
Confidence 356789999999999887 999999999999999998754 23 4556665 4577775 3 68999999986
Q ss_pred CCCCCcceEEEEEecC
Q 033923 78 VELPGTAITMHVVLRP 93 (108)
Q Consensus 78 ~~~~~~~~tvhlv~~~ 93 (108)
.. ++++....
T Consensus 82 sa------~L~v~~~~ 91 (109)
T 2dzk_A 82 SA------SVVLLPAG 91 (109)
T ss_dssp EE------EEEEECCS
T ss_pred ce------EEEEEECc
Confidence 53 56555443
No 112
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.79 E-value=0.00015 Score=48.88 Aligned_cols=68 Identities=19% Similarity=0.249 Sum_probs=55.7
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCccc--CC-CCcccccCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKIL--ED-NMTIAESRLPV 77 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L--~D-~~tL~~~~i~~ 77 (108)
.+....|.||+.+|..+. -.|..++||.+|.+-|... + .. .....|+ |-.|.| .| +.+|.++++.+
T Consensus 40 ~~~~t~IqIRlPdG~rl~-~rF~~~~tl~~V~~fV~~~-~----~~---~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~p 110 (124)
T 1wj4_A 40 NGPKAQLMLRYPDGKREQ-ITLPEQAKLLALVKHVQSK-G----YP---NERFELLTNFPRRKLSHLDYDITLQEAGLCP 110 (124)
T ss_dssp SSCEEEEEEECTTSCEEE-EEEETTSCHHHHHHHHHHH-H----CC---TTTEEEECSSSCCEETSSCSSSCTTTTTCCS
T ss_pred CCCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhc-C----CC---CCCeEEecCCCCcCCccCCCCCCHHHCCCCC
Confidence 467899999999999887 8999999999999999876 4 44 5667776 557878 34 79999999986
Q ss_pred CC
Q 033923 78 VE 79 (108)
Q Consensus 78 ~~ 79 (108)
..
T Consensus 111 sa 112 (124)
T 1wj4_A 111 QE 112 (124)
T ss_dssp SB
T ss_pred ce
Confidence 53
No 113
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=97.64 E-value=0.00017 Score=48.71 Aligned_cols=69 Identities=26% Similarity=0.410 Sum_probs=55.6
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCcccCC-CCcccccCCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILED-NMTIAESRLPVV 78 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L~D-~~tL~~~~i~~~ 78 (108)
.+....|.||+.+|..+. -.|..++||.+|.+-|....+. .. .....|+ |-.|.|.| +.||.++++.+.
T Consensus 49 ~~~~t~IqIRlpdG~rl~-~rF~~~~tl~~v~~fV~~~~~~---~~---~~~f~L~t~fPrk~l~d~~~TL~eagL~ps 120 (127)
T 1s3s_G 49 AEPTTNIQIRLADGGRLV-QKFNHSHRISDIRLFIVDARPA---MA---ATSFVLMTTFPNKELADENQTLKEANLLNA 120 (127)
T ss_dssp TSCCCCEEEEETTTTEEE-EECCSSCBHHHHHHHHHHHCSG---GG---TSCEEEEETTTTEECCSTTCBHHHHTCSSC
T ss_pred CCCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHHhCcC---CC---CCCeEEecCCCCCCCCCCCCcHHHCCCcCc
Confidence 456789999999999887 9999999999999999987542 23 4667776 45778865 699999999864
No 114
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.49 E-value=9.5e-05 Score=50.43 Aligned_cols=67 Identities=21% Similarity=0.157 Sum_probs=52.6
Q ss_pred EEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCC----------CC------------------------C
Q 033923 8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPK----------TV------------------------N 53 (108)
Q Consensus 8 ~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~----------~~------------------------~ 53 (108)
.|+|++++|...+ +.|+.+.+|++++..|....| +++. .+ .
T Consensus 13 ~LkV~llDg~~kt-l~VD~S~~V~~lv~~Ic~kig----I~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 87 (128)
T 2kc2_A 13 PLKIRMLDGTVKT-IMVDDSKTVTDMLMTICARIG----ITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKL 87 (128)
T ss_dssp EEEEECTTSCEEE-EEEEECSSHHHHHHHHHHHHT----CCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSS
T ss_pred cEEEEcCCCCEEE-EEeCCCcCHHHHHHHHHHHhC----CCCcccccccccccccccccCchhhccccccccchhHHHHH
Confidence 5899999999888 999999999999999999887 5421 00 1
Q ss_pred ceEEEE--cCcccCCCCcccccCCCCCC
Q 033923 54 NVQLIH--AGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 54 ~qRLIy--~Gk~L~D~~tL~~~~i~~~~ 79 (108)
.+||-. .+..|+++.+|.++||.+++
T Consensus 88 k~kL~~dd~~~WLD~srtL~EQGI~e~~ 115 (128)
T 2kc2_A 88 KQKLHTDDELNWLDHGRTLREQGVEEHE 115 (128)
T ss_dssp CCSCCCSSSEEEECSSSCHHHHTCCTTS
T ss_pred HHHhcccCCCCcccCCCcHHHcCCCCCC
Confidence 344421 24688889999999999887
No 115
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.44 E-value=0.0018 Score=42.35 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=54.2
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCcccC--CCCcccccCCCCCC
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILE--DNMTIAESRLPVVE 79 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L~--D~~tL~~~~i~~~~ 79 (108)
+..+.|.||+.+|+.+. -.|..++||.+|.+-|... + .. +...+|+ |-.|.|. .+.||+++|+.+..
T Consensus 21 ~~~~~IqiRlpdG~r~~-rrF~~~~tl~~v~~fv~~~-~----~~---~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a 91 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLR-RRFFKSWNSQVLLDWMMKV-G----YH---KSLYRLSTSFPRRALEVEGGSSLEDIGITVDT 91 (109)
T ss_dssp SSEEEEEEECTTSCEEE-EEEESSSBTHHHHHHHHHH-T----CC---TTTEEEECSSSCCBCCCCSSCBHHHHTCSSCE
T ss_pred CCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhc-C----CC---CCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCe
Confidence 46789999999999887 8999999999999999865 3 23 5677776 4477775 36899999999763
No 116
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=96.99 E-value=0.0045 Score=47.62 Aligned_cols=69 Identities=22% Similarity=0.210 Sum_probs=53.4
Q ss_pred eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEE------cCcccCCCCcccccCCCCCC
Q 033923 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH------AGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy------~Gk~L~D~~tL~~~~i~~~~ 79 (108)
.+.|+|++. +.+.+ +.|+|++||.++-.+|.++.+.. .+.++++--|.- .|+.|+++.+|..|++.+++
T Consensus 3 ~~~~~~~~~-~~~~~-~~f~~~~~v~~~~~~i~e~~~~~---~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~ 77 (371)
T 3ivf_A 3 ALSLKISIG-NVVKT-MQFEPSTMVYDACRMIRERIPEA---LAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGD 77 (371)
T ss_dssp CEEEEEEET-TEEEE-EEECTTCBHHHHHHHHHTTCGGG---GSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTC
T ss_pred cEEEEEEec-ceeEE-EEECCCCCHHHHHHHHHHhcccc---cCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCc
Confidence 578899988 55555 99999999999999999888741 112255555554 46789889999999999886
No 117
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.83 E-value=0.012 Score=39.16 Aligned_cols=81 Identities=21% Similarity=0.179 Sum_probs=51.3
Q ss_pred CceEEEEEEeCC--CCeeeeeEeCCcchHHHHHHHHHhhCCCCCcC--CCCCCCceEEEE----cCcccCCC--------
Q 033923 4 EDLIELKFRLAD--GADIGPSKFSPTTTVASLKEKIISRWPKEKEN--GPKTVNNVQLIH----AGKILEDN-------- 67 (108)
Q Consensus 4 ~~~i~i~~r~~~--g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i--~p~~~~~qRLIy----~Gk~L~D~-------- 67 (108)
-.++.|.+.... +..+. +.+-..+||.++|++|....-....+ .|. ++++.|=+ .|++|.|.
T Consensus 9 ~~~ltl~v~~~~~~~~~i~-vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~-~~~~dLEwr~g~~~~iL~D~D~ts~~~~ 86 (111)
T 4e71_A 9 YAPLTVSVIVQDEGVDAIP-VKVLNCDTISQVKEKIIDQVYRGQPCSCWPR-PDSVVLEWRPGSTAQILSDLDLTSQREG 86 (111)
T ss_dssp CCEEEEEEEETTSCCCCEE-EEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC--
T ss_pred eEEEEEEEEecCCCCCcee-eeeeccCcHHHHHHHHHHHHHcCCccccCCC-CCceeeEEecCCCCccccccCccceecC
Confidence 455667766543 33454 77889999999999998754222111 243 77888876 24577663
Q ss_pred -----CcccccCCCCCCCCCcceEEEEEec
Q 033923 68 -----MTIAESRLPVVELPGTAITMHVVLR 92 (108)
Q Consensus 68 -----~tL~~~~i~~~~~~~~~~tvhlv~~ 92 (108)
.||+.|++++|. ++-++.+
T Consensus 87 ~wkrLNTL~HY~V~dga------tl~l~~~ 110 (111)
T 4e71_A 87 RWKRVNTLMHYNVRDGA------TLILSKV 110 (111)
T ss_dssp -CCCCCBHHHHTCCTTC------EEEEEEC
T ss_pred cceEecchhhcCCCCCC------EEEEEeC
Confidence 267789999996 7766543
No 118
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.68 E-value=0.013 Score=37.49 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=64.8
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t 86 (108)
+.|.|...+|.... +.+.|++++.++-+.--++.+ +. +++-.|-|++|.|+=+.++.-.||+++. .
T Consensus 10 m~v~Vl~~n~rr~~-VKvtp~t~L~~VL~eaC~K~g----l~---~~~~~Lkh~~k~lDLSlpfRlsgLpnnA------k 75 (90)
T 2al3_A 10 SAVSVLAPNGRRHT-VKVTPSTVLLQVLEDTCRRQD----FN---PSEYDLKFQRTVLDLSLQWRFANLPNNA------K 75 (90)
T ss_dssp CCEEEECTTSCEEE-ECCCTTSBHHHHHHHHHHHTT----CC---GGGCEEEETTEEESSSCBHHHHCCCSSC------E
T ss_pred cEEEEEcCCCcEEE-EEECCCCCHHHHHHHHHHHhC----CC---hhhCeEEeCCEeccccceeEecCCCCCC------E
Confidence 48888889999888 999999999998888888888 55 7788999999999888889889999996 7
Q ss_pred EEEEecCCCC
Q 033923 87 MHVVLRPSLP 96 (108)
Q Consensus 87 vhlv~~~~~~ 96 (108)
+-|+......
T Consensus 76 LELv~~s~s~ 85 (90)
T 2al3_A 76 LEMVPVSRSR 85 (90)
T ss_dssp EEEECSSSCC
T ss_pred EEEEEccCCC
Confidence 8787765443
No 119
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=96.52 E-value=0.023 Score=39.06 Aligned_cols=83 Identities=24% Similarity=0.265 Sum_probs=54.2
Q ss_pred CceEEEEEEeCCC------CeeeeeEeCCcchHHHHHHHHHhhCCCCCcC--CCCCCCceEEEE----cCc-ccCCC---
Q 033923 4 EDLIELKFRLADG------ADIGPSKFSPTTTVASLKEKIISRWPKEKEN--GPKTVNNVQLIH----AGK-ILEDN--- 67 (108)
Q Consensus 4 ~~~i~i~~r~~~g------~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i--~p~~~~~qRLIy----~Gk-~L~D~--- 67 (108)
-.++.|.+-...| ..+. +.|-..+||.++|++|....-.+..+ .|. ++++-|=+ +|+ +|.|.
T Consensus 22 y~~ltl~v~~~~~~~~~~~~~i~-VkVLdCDTItQvKeKiLDavYk~~PySqRP~-~~d~dLEwr~g~~g~liL~D~D~t 99 (138)
T 2r2o_A 22 YRPLTLNALLAVGPGAGEAQGVP-VKVLDCDTISQAKEKMLDQLYKGVPLTQRPD-PRTLDVEWRSGVAGHLILSDEDVT 99 (138)
T ss_dssp CCEEEEEEEEC-------CCCEE-EEEETTCBHHHHHHHHHHHHTTTSCGGGCCC-GGGEEEEEECSSSCEEEECSSSTT
T ss_pred eEEEEEEEEccCCcccccCCcee-EEEeccccHHHHHHHHHHHHHcCCccccCCC-ccceeEEEecCCcCceEeeccCCc
Confidence 3456666655432 3454 88889999999999999764333211 244 77777765 344 47664
Q ss_pred ----------CcccccCCCCCCCCCcceEEEEEecCC
Q 033923 68 ----------MTIAESRLPVVELPGTAITMHVVLRPS 94 (108)
Q Consensus 68 ----------~tL~~~~i~~~~~~~~~~tvhlv~~~~ 94 (108)
.||+.|++++|. +|-|+.+..
T Consensus 100 S~~~~~wkrLNTL~HY~V~Dga------~l~l~~~~~ 130 (138)
T 2r2o_A 100 SEVQGLWRRLNTLQHYKVPDGA------TVALVPCLT 130 (138)
T ss_dssp CCEETTEEECCBHHHHTCCTTC------EEEEEEC--
T ss_pred ccccCCceeecchhccCCCCCC------EEEEEECCC
Confidence 288899999996 777776654
No 120
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=95.83 E-value=0.11 Score=35.17 Aligned_cols=70 Identities=26% Similarity=0.326 Sum_probs=47.4
Q ss_pred CCeeeeeEeCCcchHHHHHHHHHhhCCCCCcC--CCCCCCceEEEE-cC---c-ccCCC-------------CcccccCC
Q 033923 16 GADIGPSKFSPTTTVASLKEKIISRWPKEKEN--GPKTVNNVQLIH-AG---K-ILEDN-------------MTIAESRL 75 (108)
Q Consensus 16 g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i--~p~~~~~qRLIy-~G---k-~L~D~-------------~tL~~~~i 75 (108)
+..+. +.+-..+||.++|++|....-....+ .|. ++++.|=+ .| + +|.|. .||+.|++
T Consensus 16 ~~~i~-VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~-~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V 93 (127)
T 3h6n_A 16 MDSLS-VRAMDTDTLTQVKEKILEAFCKNVPYSQWPR-AEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKI 93 (127)
T ss_dssp CCCEE-EEEETTSBHHHHHHHHHHHHSTTSCGGGSCC-GGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTC
T ss_pred CCcee-eeeeccCchhhhhHHHHHHHhccCCcccCCC-CcccceEEecCCCCceEeecCCCcceecCceeEeccccccCC
Confidence 34454 78889999999999998754322112 244 78888877 34 3 47662 26777999
Q ss_pred CCCCCCCcceEEEEEecC
Q 033923 76 PVVELPGTAITMHVVLRP 93 (108)
Q Consensus 76 ~~~~~~~~~~tvhlv~~~ 93 (108)
++|. ++-|+.+.
T Consensus 94 ~dga------tv~l~~~~ 105 (127)
T 3h6n_A 94 PEGA------SLAMSLID 105 (127)
T ss_dssp CTTC------EEEEEECC
T ss_pred CCCC------EEEEEEcc
Confidence 9986 77776543
No 121
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=95.23 E-value=0.17 Score=33.71 Aligned_cols=82 Identities=24% Similarity=0.317 Sum_probs=51.7
Q ss_pred CceEEEEEEeCCC---CeeeeeEeCCcchHHHHHHHHHhhCCCCCcC--CCCCCCceEEEE-cCc----ccCCC------
Q 033923 4 EDLIELKFRLADG---ADIGPSKFSPTTTVASLKEKIISRWPKEKEN--GPKTVNNVQLIH-AGK----ILEDN------ 67 (108)
Q Consensus 4 ~~~i~i~~r~~~g---~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i--~p~~~~~qRLIy-~Gk----~L~D~------ 67 (108)
-.++.|.+....| ..+. +.+-..+||.++|++|....-....+ .|. ++++.|=+ .|+ +|.|.
T Consensus 11 ~~~ltl~v~~~~~~~~~~i~-VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~-~~~~dLEwr~g~~~~~iL~D~D~ts~~ 88 (117)
T 4e74_A 11 YKTLVLSCVSPDNANSPEVP-VKILNCDTITQVKEKILDAIFKNVPCSHRPK-AADMDLEWRQGSGARMILQDEDITTKI 88 (117)
T ss_dssp CCEEEEEECCC----CCCEE-EEEETTSBHHHHHHHHHHHHTTTSCGGGSCC-GGGEEEEEECTTSCEEEECSSSTTCCC
T ss_pred cEEEEEEEEccCCCCCCceE-eeeecCCchHHHHHHHHHHHhcCCCcccCCC-CCceeEEEecCCCCceEeecCCCccEe
Confidence 3455666654432 2344 77778999999999998754322111 244 78888866 343 46552
Q ss_pred -------CcccccCCCCCCCCCcceEEEEEecC
Q 033923 68 -------MTIAESRLPVVELPGTAITMHVVLRP 93 (108)
Q Consensus 68 -------~tL~~~~i~~~~~~~~~~tvhlv~~~ 93 (108)
.||+.|++++|. +|-|+.+.
T Consensus 89 ~~~wkrLNTL~HY~V~dga------tl~l~~~~ 115 (117)
T 4e74_A 89 ENDWKRLNTLAHYQVPDGS------VVALVSKQ 115 (117)
T ss_dssp ---CCCCCBHHHHTCCTTC------EEEEEECC
T ss_pred cCcceEeccccccCCCCCC------EEEEEeCC
Confidence 257779999986 77776654
No 122
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.90 E-value=0.74 Score=33.02 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=46.9
Q ss_pred eEEEEEEeCCCC-eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCC-ceEEE--Ec-Cc--ccCC-CCcccccCCCC
Q 033923 6 LIELKFRLADGA-DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVN-NVQLI--HA-GK--ILED-NMTIAESRLPV 77 (108)
Q Consensus 6 ~i~i~~r~~~g~-~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~-~qRLI--y~-Gk--~L~D-~~tL~~~~i~~ 77 (108)
.+.+++...... ....+.++..+||.+|++++....+ ++ .+ ..||- |. ++ .|.| +.+|.+++|.+
T Consensus 127 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~----i~---~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~ 199 (217)
T 4a3p_A 127 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFS----IP---DEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQ 199 (217)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTT----CC---TTSCEEEEEEEETTEEEECCCTTSBHHHHTCCT
T ss_pred ccEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhC----CC---CCCceEEEEecCCCCeeecCCCCCCHHHhCCCC
Confidence 344555443322 2223788999999999999999998 76 54 68883 42 22 5655 57999999998
Q ss_pred CC
Q 033923 78 VE 79 (108)
Q Consensus 78 ~~ 79 (108)
+.
T Consensus 200 ~Q 201 (217)
T 4a3p_A 200 GQ 201 (217)
T ss_dssp TC
T ss_pred CC
Confidence 85
No 123
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=93.07 E-value=0.62 Score=38.99 Aligned_cols=82 Identities=23% Similarity=0.269 Sum_probs=51.8
Q ss_pred CceEEEEEEeCCC------CeeeeeEeCCcchHHHHHHHHHhhCCCCCc--CCCCCCCceEEEE-c---Cc-ccCCCC--
Q 033923 4 EDLIELKFRLADG------ADIGPSKFSPTTTVASLKEKIISRWPKEKE--NGPKTVNNVQLIH-A---GK-ILEDNM-- 68 (108)
Q Consensus 4 ~~~i~i~~r~~~g------~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~--i~p~~~~~qRLIy-~---Gk-~L~D~~-- 68 (108)
..++.|.+....| ..+. +.|-..|||.++|++|...--.... ..|. ++++.|=+ . |+ +|.|..
T Consensus 255 ~~~ltL~v~~~~~~~~~~~~~i~-VkVLdCDTItQVKeKiLDavYk~~pyS~rP~-~~~~dLEwr~g~~g~~iL~D~D~t 332 (644)
T 3hm6_X 255 YRPLTLNALLAVGPGAGEAQGVP-VKVLDCDTISQAKEKMLDQLYKGVPLTQRPD-PRTLDVEWRSGVAGHLILSDEDVT 332 (644)
T ss_dssp CCEEEEEEECC-------CCCEE-EEEETTSBHHHHHHHHHHHHTTTSCGGGSCC-GGGEEEEEECSSSCEEEECSSSTT
T ss_pred ceeEEEEEeecCccccCCCCcee-eEeeccCcHHHHHHHHHHHHHcCCCcccCCC-CCCcceEEeeCCCCceeecccCcc
Confidence 3456667655433 2343 7888999999999999854221111 1243 67887766 2 34 466643
Q ss_pred -----------cccccCCCCCCCCCcceEEEEEecC
Q 033923 69 -----------TIAESRLPVVELPGTAITMHVVLRP 93 (108)
Q Consensus 69 -----------tL~~~~i~~~~~~~~~~tvhlv~~~ 93 (108)
||+.|++++|. +|-|+.+.
T Consensus 333 s~~~~~wkrLNTL~HY~V~dga------~v~L~p~~ 362 (644)
T 3hm6_X 333 SEVQGLWRRLNTLQHYKVPDGA------TVALVPCL 362 (644)
T ss_dssp CCEETTEEECCBTTTTTCCTTC------EEEEEEC-
T ss_pred ceecCcceeecchhhcCCCCCc------EEEEEecc
Confidence 78889999996 77666554
No 124
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=93.01 E-value=0.78 Score=30.91 Aligned_cols=58 Identities=24% Similarity=0.260 Sum_probs=36.9
Q ss_pred eeeeeEeCCcchHHHHHHHHHhhC----CCCCcCCCCCCCceEEEE-cCc---ccCCC--------------CcccccCC
Q 033923 18 DIGPSKFSPTTTVASLKEKIISRW----PKEKENGPKTVNNVQLIH-AGK---ILEDN--------------MTIAESRL 75 (108)
Q Consensus 18 ~~~~l~v~~~~TV~~LK~~I~~~~----~~~~~i~p~~~~~qRLIy-~Gk---~L~D~--------------~tL~~~~i 75 (108)
.+. +.+-..+||.++|++|.... +.. ..+. ++++.|=+ .|+ +|.|. .||+.|++
T Consensus 40 ~v~-VkVLdCDTItQVKEKILdavYk~k~~p--ys~r-~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V 115 (126)
T 3kuz_A 40 NIS-VNVLDCDTIGQAKEKIFQAFLSKNGSP--YGLQ-LNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEI 115 (126)
T ss_dssp EEE-EEEETTCBHHHHHHHHHHHHHHHHSSC--CSSC-GGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTC
T ss_pred ceE-eeeecCCcHHHHHHHHHHHHhccCCCc--CCCC-ccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCC
Confidence 344 77889999999999997542 311 2232 67777765 333 44442 24566889
Q ss_pred CCCC
Q 033923 76 PVVE 79 (108)
Q Consensus 76 ~~~~ 79 (108)
++|.
T Consensus 116 ~Dga 119 (126)
T 3kuz_A 116 SNGS 119 (126)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 9886
No 125
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=92.77 E-value=0.36 Score=30.25 Aligned_cols=47 Identities=11% Similarity=0.137 Sum_probs=40.1
Q ss_pred eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCc
Q 033923 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK 62 (108)
Q Consensus 6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk 62 (108)
.+.|+|... .++. +++++..+..+|+++|.++.+ ++ ++..+|.|.-.
T Consensus 5 ~~~VKV~~~--~tva-irvp~~~~y~~L~~~l~~kL~----l~---~~~~~LsYk~~ 51 (83)
T 1oey_A 5 AYTLKVHYK--YTVV-MKTQPGLPYSQVRDMVSKKLE----LR---LEHTKLSYRPR 51 (83)
T ss_dssp CEEEEEESS--SEEE-EEECTTCCHHHHHHHHHHHTT----CC---GGGCCEEECCT
T ss_pred cEEEEEEEE--EEEE-EECCCCCCHHHHHHHHHHHhC----CC---cceeEEEeeCC
Confidence 466777766 6787 999999999999999999998 67 78899999765
No 126
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=92.66 E-value=1.6 Score=31.59 Aligned_cols=67 Identities=19% Similarity=0.240 Sum_probs=46.8
Q ss_pred eEEEEEEeCCCCe-eeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCC-ceEEEE-c----CcccCC-CCcccccCCCC
Q 033923 6 LIELKFRLADGAD-IGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVN-NVQLIH-A----GKILED-NMTIAESRLPV 77 (108)
Q Consensus 6 ~i~i~~r~~~g~~-~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~-~qRLIy-~----Gk~L~D-~~tL~~~~i~~ 77 (108)
.+.++|....... ...+.++..+||.+|++++....+ ++ .+ ..||-. . ...|.| +.+|.+++|..
T Consensus 139 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~----i~---~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~ 211 (231)
T 3jyu_A 139 LLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFN----IP---AERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQ 211 (231)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTT----CC---TTSCEEEEECSSSSSCEECCCTTSBTTTTTCCT
T ss_pred cceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhC----CC---CCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCC
Confidence 3445554433221 112678999999999999999998 76 55 799853 2 235665 58999999998
Q ss_pred CC
Q 033923 78 VE 79 (108)
Q Consensus 78 ~~ 79 (108)
+.
T Consensus 212 ~Q 213 (231)
T 3jyu_A 212 GQ 213 (231)
T ss_dssp TE
T ss_pred CC
Confidence 74
No 127
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=91.68 E-value=1.5 Score=36.61 Aligned_cols=82 Identities=17% Similarity=0.246 Sum_probs=52.8
Q ss_pred CceEEEEEEeCCC---CeeeeeEeCCcchHHHHHHHHHhhCCCCCc--CCCCCCCceEEEE-c---Cc-ccCCC------
Q 033923 4 EDLIELKFRLADG---ADIGPSKFSPTTTVASLKEKIISRWPKEKE--NGPKTVNNVQLIH-A---GK-ILEDN------ 67 (108)
Q Consensus 4 ~~~i~i~~r~~~g---~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~--i~p~~~~~qRLIy-~---Gk-~L~D~------ 67 (108)
...+.|.+...+| ..+. +.|-..|||.++|++|-...-.... ..|. ++++.|=+ . |+ +|.|.
T Consensus 231 ~~~ltL~v~~~~~~~~~~i~-vkVLdCDTItQVKeKiLdavYk~~pyS~rP~-~~~~dLEwr~g~~g~~iL~D~D~ts~~ 308 (627)
T 3ig3_A 231 YKTLTLHCVCPESEGSAQVP-VKVLNCDSITQAKDKLLDTVYKGIPYSQRPK-AEDMDLEWRQGRMARIILQDEDITTKI 308 (627)
T ss_dssp CCEEEEEEECTTTC--CEEE-EEEETTCBHHHHHHHHHHHHTTTSCGGGSCC-GGGEEEEEESCSSCEEEECSSSTTCCE
T ss_pred ceeEEEEEeccCCCCCCcee-eEeeccCcHHHHHHHHHHHHHcCCCcccCCC-CCccceeEeeCCCCceeeccCCccccc
Confidence 3456666655443 3444 7888999999999999865322111 1244 78888865 2 34 45552
Q ss_pred -------CcccccCCCCCCCCCcceEEEEEecC
Q 033923 68 -------MTIAESRLPVVELPGTAITMHVVLRP 93 (108)
Q Consensus 68 -------~tL~~~~i~~~~~~~~~~tvhlv~~~ 93 (108)
.||+.|++++|. +|-|+.+.
T Consensus 309 ~~~wkrLNTL~HY~V~Dga------~v~L~p~~ 335 (627)
T 3ig3_A 309 ECDWKRVNSLAHYQVTDGS------LVALVPKQ 335 (627)
T ss_dssp ETTEEECCBTTTTTCCTTC------EEEEEEC-
T ss_pred cCceeEecchhhcCCCCCc------eEEEEecc
Confidence 367889999996 77777665
No 128
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=90.37 E-value=2.2 Score=26.77 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=52.4
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcc--cCCCCcccccCCCCCC
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKI--LEDNMTIAESRLPVVE 79 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~--L~D~~tL~~~~i~~~~ 79 (108)
+-|..++-...-..-+-++..+|+.++-++++...-+. ...|. +.-+|..++|+- |.++.++++.||.+-+
T Consensus 4 ~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~VGr-rv~p~-pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme 76 (84)
T 3ge3_C 4 FPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHCVNR-RVAPR-EGVMRVRKHRSTELFPRDMTIAESGLNPTE 76 (84)
T ss_dssp EEEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTTBTT-TBCCC-SSCEEEEETTCSCBCCTTCBHHHHCCCTTC
T ss_pred cceEEEeccccEEEEEEecCCCcHHHHHHHHhhhhcce-eeCCC-CCcEEEEECCCcccCCCCCEeeccCCCcce
Confidence 34444554443333478999999999999999654221 13455 669999999998 9999999999999876
No 129
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.86 E-value=0.35 Score=30.79 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=53.1
Q ss_pred CCCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE---EcCcccCCCCcccccCCCC
Q 033923 2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI---HAGKILEDNMTIAESRLPV 77 (108)
Q Consensus 2 ~~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI---y~Gk~L~D~~tL~~~~i~~ 77 (108)
..|.++.+-|.....+..- ++|+|..+..+|--.|-+++. +. ++..-|. -.+..|+=+.+|.+|||++
T Consensus 6 ~PE~TvRLvVNy~~tQKtV-vRVSP~vpL~ellp~IC~Kce----fd---p~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 6 SGEKTVRVVINFKKTQKTI-VRVSPHASLQELAPIICSKCE----FD---PLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CCCSCEEEEEEETTTEEEE-EEECSSSCTTTHHHHHHHHTT----CC---TTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred CCccEEEEEEeecCcceeE-EEeCCCCcHHHHHHHHhhccc----CC---hhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 3578999999997665544 999999999999999999988 55 4444443 3455777789999999984
No 130
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=88.87 E-value=3.6 Score=29.93 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=54.3
Q ss_pred eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEc---Cc--ccCCCCcccccCCCCCCC
Q 033923 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA---GK--ILEDNMTIAESRLPVVEL 80 (108)
Q Consensus 6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~---Gk--~L~D~~tL~~~~i~~~~~ 80 (108)
.+.++|.++|| ++. +.+++++|+.+|=+.|....+ +. +.+..=|.|. |. .|+.++.+.+.++..+
T Consensus 1 ~i~~~V~l~d~-~~~-~~v~~~tt~~el~~~v~~~l~----L~--e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~-- 70 (294)
T 1ef1_A 1 TISVRVTTMDA-ELE-FAIQPNTTGKQLFDQVVKTIG----LR--EVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKE-- 70 (294)
T ss_dssp CEEEEEEETTE-EEE-EEECTTCBHHHHHHHHHHHHT----CC--CGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCC--
T ss_pred CEEEEEEECCc-eEE-EEECCCCcHHHHHHHHHHHcC----CC--CcceeEEEEECCCCceeecccccCHHhhccCCC--
Confidence 47899999999 787 999999999999999999888 43 1455666553 32 4666777777654433
Q ss_pred CCcceEEEEEecC
Q 033923 81 PGTAITMHVVLRP 93 (108)
Q Consensus 81 ~~~~~tvhlv~~~ 93 (108)
.+..+++-++-
T Consensus 71 --~~~~l~fr~kf 81 (294)
T 1ef1_A 71 --SPLLFKFRAKF 81 (294)
T ss_dssp --SSEEEEEEESS
T ss_pred --CCEEEEEEEEE
Confidence 24566666653
No 131
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=88.75 E-value=3.7 Score=30.26 Aligned_cols=78 Identities=9% Similarity=0.039 Sum_probs=56.3
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEE--cCc--ccCCCCcccccCCCCCC
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH--AGK--ILEDNMTIAESRLPVVE 79 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy--~Gk--~L~D~~tL~~~~i~~~~ 79 (108)
...+.++|.+.+| ++. +.+++++|+.+|=+.|....+ +. +.+..=|.| .|. .|+.+..|.+.....+.
T Consensus 20 ~~~~~~~V~lldg-~~~-~~v~~~t~~~el~~~v~~~l~----L~--e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~ 91 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EME-FNCEMKWKGKDLFDLVCRTLG----LR--ETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEE 91 (314)
T ss_dssp -CEEEEEEECSSC-EEE-EEEETTCBHHHHHHHHHHHHT----CC--CGGGEEEEEEETTEEEECCTTSBGGGSSCCCSS
T ss_pred CCeeEEEEEeCCc-eEE-EEeCCCCcHHHHHHHHHHHhC----CC--CCccceEEEEeCCcCeeCCCccCHHHcCCCCCC
Confidence 4578899999999 788 999999999999999999888 43 155666655 332 57777888876544332
Q ss_pred CCCcceEEEEEecC
Q 033923 80 LPGTAITMHVVLRP 93 (108)
Q Consensus 80 ~~~~~~tvhlv~~~ 93 (108)
+..+++-++-
T Consensus 92 ----~~~l~fr~kf 101 (314)
T 1h4r_A 92 ----PVTFHFLAKF 101 (314)
T ss_dssp ----SEEEEEEESS
T ss_pred ----CEEEEEEEEE
Confidence 4466666553
No 132
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=88.02 E-value=1 Score=29.50 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=32.2
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhh
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISR 40 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~ 40 (108)
..+.|.+-+.+|--+. +++..+.|+.++|+.++++
T Consensus 18 ~~v~v~~LlPnGi~i~-l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 18 PRILVECLLPNGMIVT-LECLREATLITIKHELFKE 52 (108)
T ss_dssp SEEEEEEECTTSCEEE-EEEETTCBHHHHHHHHHHH
T ss_pred CcEEEEEEcCcEEEEE-EEeeccccHHHHHHHHHHH
Confidence 6688999999999887 9999999999999999986
No 133
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=86.40 E-value=5.3 Score=32.65 Aligned_cols=79 Identities=9% Similarity=0.054 Sum_probs=56.8
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC-----cccCCCCcccccCCCCC
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG-----KILEDNMTIAESRLPVV 78 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G-----k~L~D~~tL~~~~i~~~ 78 (108)
...+.++|.+++| ++. |.+++++|+.+|=+.|....+ +. +...+=|.|.. ..|+.+.+|.+.++..+
T Consensus 2 ~k~i~v~V~llDg-t~e-~~vd~~tt~~ell~~V~~~Lg----L~--e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~ 73 (575)
T 2i1j_A 2 PKSMNVRVTTMDA-ELE-FAIQQTTTGKQLFDQVVKTIG----LR--EVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKE 73 (575)
T ss_dssp -CEEEEEEECSSC-EEE-EEEETTCBHHHHHHHHHHHHT----CC--CGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCC
T ss_pred CceEEEEEEeCCC-eEE-EEECCCCCHHHHHHHHHHHcC----CC--CccceeEEEEecCcchhHhhccccHHHhcccCC
Confidence 3578999999999 777 999999999999999999888 43 25566666642 35666777777655433
Q ss_pred CCCCcceEEEEEecCC
Q 033923 79 ELPGTAITMHVVLRPS 94 (108)
Q Consensus 79 ~~~~~~~tvhlv~~~~ 94 (108)
.+..+++-++--
T Consensus 74 ----~~~~L~FRvkfy 85 (575)
T 2i1j_A 74 ----NPLQFKFRAKFY 85 (575)
T ss_dssp ----SSEEEEEEESSC
T ss_pred ----CCeEEEEEEEEc
Confidence 245677766643
No 134
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=85.75 E-value=4.2 Score=24.52 Aligned_cols=56 Identities=11% Similarity=0.191 Sum_probs=35.9
Q ss_pred CeeeeeEeCCcchHHHHHHHHHhhCCCCCc---CCC-CC-CCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 17 ADIGPSKFSPTTTVASLKEKIISRWPKEKE---NGP-KT-VNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 17 ~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~---i~p-~~-~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
.... ++++...||++|.+.+...++. +. +.. .. ....++.-+|+.... +.-+++||
T Consensus 18 ~~~~-~~~~~~~Tv~~ll~~L~~~~p~-~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gD 78 (89)
T 3po0_A 18 RTVR-VDVDGDATVGDALDALVGAHPA-LESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGD 78 (89)
T ss_dssp SEEE-EECCTTCBHHHHHHHHHHHCGG-GHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTC
T ss_pred CeEE-EECCCCCcHHHHHHHHHHHCcH-HHHHHhccCCcccccEEEEECCEECCC-----CcccCCCC
Confidence 3444 8888788999999999988762 10 000 00 023677788887765 34567777
No 135
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=85.68 E-value=8.6 Score=29.06 Aligned_cols=74 Identities=19% Similarity=0.164 Sum_probs=52.4
Q ss_pred eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC---------cccCCCCcccccCCC
Q 033923 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG---------KILEDNMTIAESRLP 76 (108)
Q Consensus 6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G---------k~L~D~~tL~~~~i~ 76 (108)
.+.++|.+++|.... +.+++++|+.+|=+.|....+ +. +.+..-|.+.- +.|+-++++.+-+..
T Consensus 85 ~~~~~V~l~dg~~~~-~~vd~~tt~~el~~~v~~~l~----L~--e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~ 157 (371)
T 3ivf_A 85 QRPLKIRMLDGTVKT-IMVDDSKTVTDMLMTICARIG----IT--NHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVE 157 (371)
T ss_dssp EEEEEEECTTSCEEE-EEEETTSBHHHHHHHHHHHTT----CS--CGGGEEEECCC----------CCCTTSBTGGGTCC
T ss_pred eeEEEEECcCCCEEE-EEECCCCCHHHHHHHHHHHcC----CC--CccccEEEEEecccccchHHHHHhcCchhHhhCCC
Confidence 467889999999887 999999999999999999988 43 26677776642 345555566554433
Q ss_pred CCCCCCcceEEEEEec
Q 033923 77 VVELPGTAITMHVVLR 92 (108)
Q Consensus 77 ~~~~~~~~~tvhlv~~ 92 (108)
.. .++++-++
T Consensus 158 ~~------~~l~frvK 167 (371)
T 3ivf_A 158 EH------ETLLLRRK 167 (371)
T ss_dssp TT------CEEEEEEC
T ss_pred CC------ceEEEEEE
Confidence 22 25666554
No 136
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=85.25 E-value=0.68 Score=31.00 Aligned_cols=33 Identities=9% Similarity=0.064 Sum_probs=29.4
Q ss_pred eeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEc
Q 033923 21 PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60 (108)
Q Consensus 21 ~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~ 60 (108)
.+.+..++|+.+||+.|+...| ++ ++.|||-..
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg----~~---~~~~RlW~~ 91 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMG----FP---QDQIRLWPM 91 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHC----CC---GGGCEEEEC
T ss_pred eEEEeccCcHHHHHHHHHHHhC----CC---cccEEEEEe
Confidence 3788899999999999999999 78 899999654
No 137
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=84.22 E-value=5.5 Score=24.62 Aligned_cols=68 Identities=16% Similarity=0.207 Sum_probs=43.3
Q ss_pred ceEEEEEEeC------CCC-eeeeeEeCCcchHHHHHHHHHhhCCCCCcCC---C--CCCCceEEEEcCcccCCCCcccc
Q 033923 5 DLIELKFRLA------DGA-DIGPSKFSPTTTVASLKEKIISRWPKEKENG---P--KTVNNVQLIHAGKILEDNMTIAE 72 (108)
Q Consensus 5 ~~i~i~~r~~------~g~-~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~---p--~~~~~qRLIy~Gk~L~D~~tL~~ 72 (108)
..++|+|++- .|. ... ++++...||++|.+.+...++. +... + .-.....+.-+|+.... +
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~-~e~~~~~Tv~~Ll~~L~~~~p~-l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~ 80 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEE-IELPEGARVRDLIEEIKKRHEK-FKEEVFGEGYDEDADVNIAVNGRYVSW-----D 80 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEE-EEECTTCBHHHHHHHHHHHCGG-GGGSCBCSSSCTTSSBEEEETTBCCCT-----T
T ss_pred CcEEEEEEEhHHHHHHhCCCeEE-EECCCCCCHHHHHHHHHhHChh-HHHHhhccccccCCcEEEEECCEECCC-----C
Confidence 3567777774 343 444 8888889999999999987652 1000 0 00245678888887753 4
Q ss_pred cCCCCCC
Q 033923 73 SRLPVVE 79 (108)
Q Consensus 73 ~~i~~~~ 79 (108)
..+++||
T Consensus 81 ~~L~dGD 87 (98)
T 1vjk_A 81 EELKDGD 87 (98)
T ss_dssp CBCCTTC
T ss_pred CCCCCCC
Confidence 5677787
No 138
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=84.04 E-value=11 Score=33.45 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=58.0
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCC-CcCCCCCCCceEEEEcCc-----ccCC-CCcccccCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KENGPKTVNNVQLIHAGK-----ILED-NMTIAESRL 75 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~-~~i~p~~~~~qRLIy~Gk-----~L~D-~~tL~~~~i 75 (108)
.++.+.|-+-+.+|..+. +++..+.|+.++|+.|+.+-..- +-..-.+++.-.+.|-.+ .+.| .+.|.+...
T Consensus 48 ~~~~v~vd~LLPnGi~i~-~~v~~~~Tl~~iK~~lw~~A~~~pl~~~l~~~~~Y~f~~i~~~~e~ee~~de~~~l~~~~~ 126 (1092)
T 2y3a_A 48 SDGAISVDFLLPTGIYIQ-LEVPREATISYIKQMLWKQVHNYPMFNLLMDIDSYMFACVNQTAVYEELEDETRRLCDVRP 126 (1092)
T ss_dssp CCSEEEEEEECTTCCEEE-EEEETTCBHHHHHHHHHHHGGGSTTTTSCCCGGGEEEEEEBSSSCEEECCCTTSBSGGGCB
T ss_pred CCCceEEEEECCCceEEE-EEecCcccHHHHHHHHHHHHHhCCchhccCCcceeEEEEecCCceEEEeecCceeeEeecc
Confidence 457899999999999887 99999999999999999872210 001123477778877433 2544 477888764
Q ss_pred CCCCCCCcceEEEEEecC
Q 033923 76 PVVELPGTAITMHVVLRP 93 (108)
Q Consensus 76 ~~~~~~~~~~tvhlv~~~ 93 (108)
-.. .+.|+-+.
T Consensus 127 ~~p-------~l~lve~~ 137 (1092)
T 2y3a_A 127 FLP-------VLKLVTRS 137 (1092)
T ss_dssp SSS-------CEEEEESC
T ss_pred cce-------EEEEEecC
Confidence 322 67787773
No 139
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=83.29 E-value=3.7 Score=25.78 Aligned_cols=37 Identities=14% Similarity=0.321 Sum_probs=29.4
Q ss_pred eEEEEEEeCCCCeeeeeEeC-CcchHHHHHHHHHhhCC
Q 033923 6 LIELKFRLADGADIGPSKFS-PTTTVASLKEKIISRWP 42 (108)
Q Consensus 6 ~i~i~~r~~~g~~~~~l~v~-~~~TV~~LK~~I~~~~~ 42 (108)
+-.|.+|..+.++...+.++ ...+|.+||+.|..+..
T Consensus 6 mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~k 43 (86)
T 2c7h_A 6 MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREK 43 (86)
T ss_dssp BEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHT
T ss_pred eeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhC
Confidence 44677788877776667777 67899999999998776
No 140
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=83.07 E-value=8.6 Score=28.69 Aligned_cols=47 Identities=13% Similarity=0.064 Sum_probs=37.1
Q ss_pred eeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCc-ccCCC-CcccccC
Q 033923 21 PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK-ILEDN-MTIAESR 74 (108)
Q Consensus 21 ~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk-~L~D~-~tL~~~~ 74 (108)
.+.+.+..|+.+++++++.+.+ ++ ++.|.|+|.+. +.-|. ....+|.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~t~----i~---~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 325 KIYIHSYNTATIFHELVYKQTK----II---SSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp EEEECTTCBHHHHHHHHHHHHC----CC---STTEEEESSSSEECCCSSCBTTSSC
T ss_pred EEEcCchhHHHHHHHHHHHhcC----CC---hhhhHHHhcCCCCCCCCCCccccCC
Confidence 3788899999999999999998 77 89999999994 44443 4444444
No 141
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=81.23 E-value=2.5 Score=26.68 Aligned_cols=51 Identities=8% Similarity=0.132 Sum_probs=41.1
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
-+++-..+++.||+.++.+.+ +. -+.-.+--....|+++.+|.+-+++-..
T Consensus 7 qhmDI~epL~~Lk~LLe~Rl~----i~---L~~y~f~LQd~~L~~~k~LvdQcVqgeG 57 (89)
T 2juo_A 7 QAIDINEPIGNLKKLLEPRLQ----CS---LDAHEICLQDIQLDPDRSLFDQGVKTDG 57 (89)
T ss_dssp EEEESSSBGGGHHHHSHHHHC----SC---CSSCEEEETTEECCTTSBTTTSSCCCCS
T ss_pred hhccccCcHHHHHHHHHHHhc----CC---cccCeEEeeccccCCCccHHHhhccccc
Confidence 567778899999999999998 55 6666666677789999999998887443
No 142
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=80.92 E-value=7.9 Score=24.13 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=45.5
Q ss_pred eeEeCCcchHHHHHHHHHhhC-CCCCcCCCCCCCceEEEEcC--cccCCCCcccccCCCCCC
Q 033923 21 PSKFSPTTTVASLKEKIISRW-PKEKENGPKTVNNVQLIHAG--KILEDNMTIAESRLPVVE 79 (108)
Q Consensus 21 ~l~v~~~~TV~~LK~~I~~~~-~~~~~i~p~~~~~qRLIy~G--k~L~D~~tL~~~~i~~~~ 79 (108)
-+-++.++|+.++-++++... |-. ++|....-.|..+.| +.|..+.|+++.+|.+-+
T Consensus 16 LV~VDt~dTmdqVA~kvA~HsVGrR--V~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e 75 (83)
T 2inc_C 16 LVPVDTEDTMDQVAEKCAYHSINRR--VHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTE 75 (83)
T ss_dssp EEEECTTCBHHHHHHHHHTTTBTTT--BCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTC
T ss_pred EEEecCCCcHHHHHHHHhhhhccee--cCCCCCCeEEEEecCCccCCCCCCEeeccCCCCce
Confidence 378899999999999999643 222 444424478999999 999999999999999776
No 143
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=80.08 E-value=2 Score=31.79 Aligned_cols=78 Identities=9% Similarity=-0.081 Sum_probs=53.6
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC-----cccCCCCcccccCCCC
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG-----KILEDNMTIAESRLPV 77 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G-----k~L~D~~tL~~~~i~~ 77 (108)
....+.++|.++||.... +.+++++|+.+|=+.|.+..+ +. +.+..=|.|.. ..|+.++.+.+....
T Consensus 14 ~~~~~~~~V~lldgt~~~-~~vd~~tt~~el~~~v~~~l~----L~--e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~- 85 (296)
T 3qij_A 14 LYFQGHCKVSLLDDTVYE-CVVEKHAKGQDLLKRVCEHLN----LL--EEDYFGLAIWDNATSKTWLDSAKEIKKQVRG- 85 (296)
T ss_dssp ---CCEEEEECTTSCEEE-EECCTTCBHHHHHHHHHHHHT----CS--SGGGEEEEEEEETTEEEECCTTSBHHHHC---
T ss_pred CCceEEEEEEccCCCEEE-EEECCCCCHHHHHHHHHHHcC----CC--CcceeEEEEEcCCCccchhccchhHHHhcCC-
Confidence 345689999999999887 999999999999999999988 43 15555555532 356667777665321
Q ss_pred CCCCCcceEEEEEecC
Q 033923 78 VELPGTAITMHVVLRP 93 (108)
Q Consensus 78 ~~~~~~~~tvhlv~~~ 93 (108)
.+..+++-++-
T Consensus 86 -----~~~~l~frvkf 96 (296)
T 3qij_A 86 -----VPWNFTFNVKF 96 (296)
T ss_dssp ------CCEEEEEESS
T ss_pred -----CCcEEEEEEEE
Confidence 13466666654
No 144
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=79.11 E-value=5.8 Score=23.69 Aligned_cols=49 Identities=10% Similarity=0.126 Sum_probs=34.2
Q ss_pred EEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCC
Q 033923 8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNM 68 (108)
Q Consensus 8 ~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~ 68 (108)
+|+|++-..... .++++...||++|-++ .+ ++ +...-..-+|+.+.-+.
T Consensus 2 ~v~Vkl~g~~~~-~~ev~~g~Tv~dLL~~----Lg----l~---~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 2 NVTVEVVGEETS-EVAVDDDGTYADLVRA----VD----LS---PHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp EEEEECSSSSEE-EEECSTTCSHHHHHHT----TC----CC---SSCCCEECCCCCCCTTS
T ss_pred EEEEEEeCccce-eEEcCCCCcHHHHHHH----cC----CC---cceEEEEECCEECCHHH
Confidence 567777633333 4899999999987654 55 66 55556778999886555
No 145
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=78.19 E-value=5.7 Score=25.45 Aligned_cols=65 Identities=20% Similarity=0.150 Sum_probs=45.4
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEE---EEcCcccCCCCccccc
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQL---IHAGKILEDNMTIAES 73 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRL---Iy~Gk~L~D~~tL~~~ 73 (108)
..+.|+|-..||.... +.|++++|++++=+.+..+.... ......-.-- ++.-|+++|.+.|-+.
T Consensus 8 ~k~vvkvf~~Dgssks-i~V~~~~Ta~dv~~~L~~K~~~~---~~~~WaLvE~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRS-VEVAAGATARHVCEMLVQRAHAL---SDETWGLVECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp SCEEEEEEETTSCEEE-EEECTTCCHHHHHHHHHCSSSCC---CCCCCCEEEEETTTTEEEEECSSSCHHHH
T ss_pred CCEEEEEEecCCCEEE-EEECCCCcHHHHHHHHHHHcCCC---CCCCeEEEEecCCCCcEEeccCchhHHHH
Confidence 4578888889999887 99999999999999999876521 1011111111 1245778998887776
No 146
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=77.54 E-value=7.4 Score=22.57 Aligned_cols=45 Identities=16% Similarity=0.333 Sum_probs=33.1
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCce--EEEEcCcccCCCCcccccCCCCCC
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNV--QLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~q--RLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
+++....||.+|.+.+...++. ...+ .+..+|+....+ ..+++||
T Consensus 20 ~~~~~~~tv~~ll~~l~~~~p~--------~~~v~~~v~vNg~~v~~~-----~~L~~gD 66 (77)
T 2q5w_D 20 IVLEQALTVQQFEDLLFERYPQ--------INNKKFQVAVNEEFVQKS-----DFIQPND 66 (77)
T ss_dssp CCCSSCEEHHHHHHHHHHHCGG--------GTTCCCEEEETTEEECTT-----SEECTTC
T ss_pred EECCCCCCHHHHHHHHHHHCcc--------hhcceEEEEECCEECCCC-----CCcCCCC
Confidence 6777788999999999888752 2334 788899888653 4567777
No 147
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=74.45 E-value=16 Score=29.19 Aligned_cols=62 Identities=18% Similarity=0.177 Sum_probs=46.1
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC----cccCCCCccc
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG----KILEDNMTIA 71 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G----k~L~D~~tL~ 71 (108)
...+.++|.+.+|.... +.+++++|+.+|-+.|....+ +... .+..-|.+.. +.|.+++.+.
T Consensus 214 ~~~~~~~V~l~dg~~~~-~~v~~~tt~~el~~~v~~~lg----L~e~-~~~FgL~~~~~~~~~~L~~~~~i~ 279 (555)
T 3au4_A 214 RQEMTSTVYCHGGGSCK-ITINSHTTAGEVVEKLIRGLA----MEDS-RNMFALFEYNGHVDKAIESRTVVA 279 (555)
T ss_dssp TCCEEEEEEETTSCEEE-EEECTTCBHHHHHHHHHHHTT----CTTC-CSEEEEEEESSSCEEECCTTSBHH
T ss_pred CCCcceEEEecCCCeEE-EEeCCCCcHHHHHHHHHHHcC----CCCC-CCceEEEEEeCCeeEecCCCCchh
Confidence 34688999999999887 999999999999999999998 5421 4566665532 2355555443
No 148
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=70.39 E-value=19 Score=23.21 Aligned_cols=37 Identities=8% Similarity=-0.020 Sum_probs=26.7
Q ss_pred ceEEEEEEeCC------C--CeeeeeEeCC---cchHHHHHHHHHhhCC
Q 033923 5 DLIELKFRLAD------G--ADIGPSKFSP---TTTVASLKEKIISRWP 42 (108)
Q Consensus 5 ~~i~i~~r~~~------g--~~~~~l~v~~---~~TV~~LK~~I~~~~~ 42 (108)
+++.|+|++.. | +.+. ++++. ..||++|-+.|.+.++
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~-vel~~~~~~~TV~~Ll~~L~~~~~ 57 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQ-VALPGQEEPWDIRNLLVWIKKNLL 57 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEE-EEECCCSSCCBHHHHHHHHTTTTC
T ss_pred CCcEEEEEEchHHHHHhCCceEEE-EEeCCCCCCCCHHHHHHHHHHHcc
Confidence 34788888853 3 2444 77773 3699999999999875
No 149
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=69.43 E-value=6.8 Score=32.68 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=41.3
Q ss_pred CCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcc-cCCCCcccccCC
Q 033923 15 DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKI-LEDNMTIAESRL 75 (108)
Q Consensus 15 ~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~-L~D~~tL~~~~i 75 (108)
...... +.+.+++|+.+|++.|.+..+ ++ ++.|.|++.+.+ |......++|.+
T Consensus 320 ~~~~~~-~~i~~~~tl~~l~~~i~~~T~----i~---~~~q~~~~~~~~~~~p~~~~~~~~~ 373 (676)
T 3qa8_A 320 SGRVHT-YPVTENENLQNLKSWLQQDTG----IP---EEEQELLQASGLALNSAQPLTQYVI 373 (676)
T ss_dssp SSCCCE-EECCTTCCHHHHHHHHHTTSC----CC---STTCEEESSSSCCCCTTSCGGGSCC
T ss_pred ccccce-eecCCCccHHHHHHHHHHHhC----CC---HHHHHHHhccCCCCCCCcchhhhee
Confidence 444444 888899999999999999999 88 889999987764 455556777743
No 150
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=68.05 E-value=15 Score=21.29 Aligned_cols=62 Identities=5% Similarity=0.012 Sum_probs=36.7
Q ss_pred EEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 8 ~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
.|+|++...-.-..+++ ...||++|.+.+....+ +... ....++.-+|+...+ .+..+++||
T Consensus 2 ~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~----l~~~-l~~~~vavN~~~v~~----~~~~l~~gD 63 (74)
T 3rpf_C 2 MVEVRFFGPIKEENFFI-KANDLKELRAILQEKEG----LKEW-LGVCAIALNDHLIDN----LNTPLKDGD 63 (74)
T ss_dssp EEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTT----TTTT-TTTCEEEESSSEECC----TTCCCCTTC
T ss_pred EEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcC----HHHH-hhccEEEECCEEcCC----CCcCCCCCC
Confidence 35555532211023667 67899999999987522 2210 256777778887543 244577787
No 151
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=67.28 E-value=20 Score=22.34 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=39.4
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccc
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAE 72 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~ 72 (108)
..+.||+... |..+. +.++++.+-.+|.++|.+.++ +.+ ...+.+-|.--- .|..+|++
T Consensus 5 ~~vkvK~~~~-gdi~~-~~v~~~i~~~~L~~kv~~~~~----~~~--~~~f~lky~DEe-GD~itisS 63 (89)
T 1vd2_A 5 SQVRVKAYYR-GDIMI-THFEPSISFEGLCNEVRDMCS----FDN--EQLFTMKWIDEE-GDPCTVSS 63 (89)
T ss_dssp SCEEEEEESS-SCEEE-EEECTTCCHHHHHHHHHHHTT----CCS--SCCEEEEECCSS-SCCEECCS
T ss_pred CeEEEEEEeC-CeEEE-EECCCCCCHHHHHHHHHHHhC----CCC--CCeEEEEEECCC-CCcccccC
Confidence 4566666554 45555 999999999999999999998 431 344666665432 33344544
No 152
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=65.86 E-value=3.9 Score=33.04 Aligned_cols=33 Identities=9% Similarity=0.064 Sum_probs=28.8
Q ss_pred eeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEc
Q 033923 21 PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60 (108)
Q Consensus 21 ~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~ 60 (108)
.+++..++|+.+||++|++..| ++ +++|||-..
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg----~~---~~~~RlW~~ 71 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMG----FP---QDQIRLWPM 71 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHT----SC---GGGEEEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhC----cC---cccEEEEEE
Confidence 3788899999999999999999 77 899999533
No 153
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=63.16 E-value=22 Score=22.17 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=26.3
Q ss_pred eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCC
Q 033923 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWP 42 (108)
Q Consensus 6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~ 42 (108)
.+.|||-.-+ .-+ .+.++++.+..+|+.+|..+..
T Consensus 12 ~~KVK~yy~D-DIi-AIrvP~di~~~~L~dKi~~RLk 46 (85)
T 1ip9_A 12 TTKIKFYYKD-DIF-ALMLKGDTTYKELRSKIAPRID 46 (85)
T ss_dssp CEEEEECBTT-CCE-EEEECSCCCHHHHHHHHHHHHT
T ss_pred ceEEEEEecC-cEE-EEECCCCCCHHHHHHHHHHHhc
Confidence 3455553333 344 4999999999999999999977
No 154
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=59.88 E-value=35 Score=28.23 Aligned_cols=49 Identities=18% Similarity=0.096 Sum_probs=40.8
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEc
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~ 60 (108)
..+.++|.+.+|.... +.+++.+|+.+|-+.|....+ +. +....-|.|.
T Consensus 262 ~~i~~~V~llDgt~~~-~~vds~Tt~~ell~~V~~~Lg----L~--e~~~FgL~~~ 310 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKT-LLTDSATTARELCNALADKIS----LK--DRFGFSLYIA 310 (655)
T ss_dssp CCEEEEEEETTSCEEE-EEECTTCBHHHHHHHHHHHTT----CS--SCTTEEEEEE
T ss_pred CceEEEEEecCCceEE-EEEccCCcHHHHHHHHHHHcC----Cc--ccccceeEEe
Confidence 4678999999999887 999999999999999999988 32 1567777663
No 155
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=59.35 E-value=23 Score=20.39 Aligned_cols=55 Identities=11% Similarity=0.131 Sum_probs=36.9
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
++|+|+-..+. .. ++++...||.+|.+.+ + ++ +....+..+|.++..+. .+++||
T Consensus 5 m~i~vNg~~~~-~~-~~~~~~~tv~~Ll~~l----~----~~---~~~v~vavN~~~v~~~~-----~L~~gD 59 (70)
T 1ryj_A 5 MKFTVITDDGK-KI-LESGAPRRIKDVLGEL----E----IP---IETVVVKKNGQIVIDEE-----EIFDGD 59 (70)
T ss_dssp EEEEEEETTEE-EE-EEESSCCBHHHHHHHT----T----CC---TTTEEEEETTEECCTTS-----BCCTTC
T ss_pred EEEEEeCccCc-ee-EECCCCCcHHHHHHHh----C----CC---CCCEEEEECCEECCCcc-----cCCCCC
Confidence 45555444332 22 7778889999998875 3 34 56677889999987655 466776
No 156
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=57.76 E-value=12 Score=21.20 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=22.1
Q ss_pred EEEEEeCCCCeeeeeEeCCcchHHHHHHHHHh
Q 033923 8 ELKFRLADGADIGPSKFSPTTTVASLKEKIIS 39 (108)
Q Consensus 8 ~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~ 39 (108)
.+++.+.+|+. .+++...|+.+|-+.+..
T Consensus 2 ~i~i~~p~g~~---~~~~~g~T~~dla~~i~~ 30 (73)
T 2kmm_A 2 EVMVFTPKGEI---KRLPQGATALDFAYSLHS 30 (73)
T ss_dssp CEEEECTTCCE---EEECTTCBHHHHHHHHCS
T ss_pred eEEEEcCCCCE---EEcCCCCcHHHHHHHHhh
Confidence 46777778874 667888999999887743
No 157
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=57.28 E-value=23 Score=28.54 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=37.2
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEE--EEcCc---ccCCCCccccc
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQL--IHAGK---ILEDNMTIAES 73 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRL--Iy~Gk---~L~D~~tL~~~ 73 (108)
+-++.+.||++|-+.+..+.+ ++......+|| ||+|| ++.++.+|+..
T Consensus 356 l~vpK~gtV~Dll~~l~k~~~----~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i 408 (530)
T 2ylm_A 356 LYPDKHGCVRDLLEECKKAVE----LGEKASGKLRLLEIVSYKIIGVHQEDELLECL 408 (530)
T ss_dssp ECCBTTCBHHHHHHHHHTTCC----CCTTCCCCEEEEEEETTEEEEEECTTSBGGGS
T ss_pred EEcCCCCCHHHHHHHHHHhcC----CCcCCcccEEEEEEECCEEEEecCCCcccccc
Confidence 667789999999999998877 44334788998 68998 45677777654
No 158
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=56.50 E-value=16 Score=24.38 Aligned_cols=59 Identities=14% Similarity=0.104 Sum_probs=36.5
Q ss_pred eeEeCC----cchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCC-CCcccccCCCCCC
Q 033923 21 PSKFSP----TTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILED-NMTIAESRLPVVE 79 (108)
Q Consensus 21 ~l~v~~----~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D-~~tL~~~~i~~~~ 79 (108)
.+.+++ ..|.++|-+.|..+++-.-++...+.+++||||-==+=.+ +++|++.|+.+|+
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gs 72 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGS 72 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTC
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCc
Confidence 366664 3588887777776665211233122346888887643222 4889999999876
No 159
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=52.67 E-value=33 Score=20.14 Aligned_cols=60 Identities=12% Similarity=0.216 Sum_probs=36.5
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcCCCC----C---CCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEEEEe
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKENGPK----T---VNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVL 91 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~----~---~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv~ 91 (108)
++++...||++|.+.+....+. +... . .....+..+|+....... .+..+++|+ .|.++.
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~---~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~-~~~~l~~gD------~V~i~p 85 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGS---EFTKQMYDGNNLFKNVIILVNGNNITSMKG-LDTEIKDDD------KIDLFP 85 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCH---HHHHHHCCSSCSTTTCEEEESSSBGGGTCS-SSCBCCTTC------EEEEEC
T ss_pred EEcCCCCcHHHHHHHHHHHCcc---hhhhccccccCcCcceEEEECCEEccccCC-CCcCCCCCC------EEEEeC
Confidence 5666678999999999887641 1000 0 145678888887752211 234577887 665543
No 160
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=51.28 E-value=31 Score=25.67 Aligned_cols=38 Identities=8% Similarity=0.183 Sum_probs=31.5
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCC
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWP 42 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~ 42 (108)
=..+-++|=+.+|.... +.|++++|+++|=+.+..+..
T Consensus 29 ~~k~ivkv~~~D~ss~~-l~V~~~~TA~dv~~~L~~k~~ 66 (281)
T 4gmv_A 29 VKKLVIRVHMSDDSSKT-MMVDERQTVRQVLDNLMDKSH 66 (281)
T ss_dssp SCEEEEEEEETTSCEEE-EEEETTCBHHHHHHHHHHHSC
T ss_pred cccEEEEEEecCCCEEE-EEECCCCcHHHHHHHHHHhcC
Confidence 34567888888998887 999999999999888887654
No 161
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=49.93 E-value=39 Score=21.28 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=37.9
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCC--------ceEEEEcC-cccCC------CCcccccCCCCCCCCCcceE
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVN--------NVQLIHAG-KILED------NMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~--------~qRLIy~G-k~L~D------~~tL~~~~i~~~~~~~~~~t 86 (108)
+++++++|..+|-+.|.+.-. +.=.+|+ .-.|...+ ..|+. +++|.+.++.+|+ .
T Consensus 9 l~v~~~~TL~~lid~L~~~p~----~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~------e 78 (98)
T 1y8x_B 9 IQFSPSAKLQEVLDYLTNSAS----LQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQ------E 78 (98)
T ss_dssp EECCTTCBHHHHHHHHHHCTT----CCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTC------E
T ss_pred EEECCchhHHHHHHHHHhChH----hhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCC------E
Confidence 899999999999999998433 2111123 33443333 24432 3668899988887 5
Q ss_pred EEEE
Q 033923 87 MHVV 90 (108)
Q Consensus 87 vhlv 90 (108)
|++.
T Consensus 79 i~Vt 82 (98)
T 1y8x_B 79 LAVA 82 (98)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
No 162
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=48.44 E-value=8.3 Score=22.80 Aligned_cols=42 Identities=7% Similarity=0.108 Sum_probs=29.2
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
++++...||.+|.+.+ + ++ ...+.+..+|++...+ ..+++||
T Consensus 25 ~~~~~~~Tv~dLl~~L----~----~~---~~~v~VavNg~~v~~~-----~~L~dGD 66 (77)
T 1rws_A 25 IEWREGMKVRDILRAV----G----FN---TESAIAKVNGKVVLED-----DEVKDGD 66 (77)
T ss_dssp CCCCSSCCHHHHHHTT----T----CS---SCSSCEEETTEEECSS-----SCCCSSC
T ss_pred EECCCCCcHHHHHHHh----C----CC---CcCEEEEECCEECCCC-----CCcCCCC
Confidence 6677788999988764 2 33 4556788899988654 4456665
No 163
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=47.44 E-value=21 Score=23.45 Aligned_cols=68 Identities=13% Similarity=0.067 Sum_probs=44.4
Q ss_pred CceEEEEEEeCCCC----eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 4 EDLIELKFRLADGA----DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 4 ~~~i~i~~r~~~g~----~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
++-+.|.|+....+ .++ +.++.+. ..-. .+ |--+||-|.|++.+|+..=++|....+.
T Consensus 26 defv~I~I~~p~ir~~a~~~e-i~vd~~~------------F~F~--~~---PYyLRL~lP~~vved~~~~A~YD~d~g~ 87 (115)
T 3eud_A 26 EEFIFLKIFISNIRFSAVGLE-IIIQENM------------IIFH--LS---PYYLRLRFPHELIDDERSTAQYDSKDEC 87 (115)
T ss_dssp SSEEEEEEECCSCCCCSSSCE-EEEETTE------------EEEE--ET---TEEEEEECSSCEECSTTCEEEEETTTTE
T ss_pred CCEEEEEEEcCceecccCccE-EEEeCCE------------EEEe--cC---CeEEEEecCcceecCCCcceEEeCCCcE
Confidence 45677888876543 333 5454432 1100 24 7999999999999998888899988773
Q ss_pred CCCcceEEEEEecCC
Q 033923 80 LPGTAITMHVVLRPS 94 (108)
Q Consensus 80 ~~~~~~tvhlv~~~~ 94 (108)
.++.+-...+
T Consensus 88 -----~~v~lpK~~~ 97 (115)
T 3eud_A 88 -----INVKVAKLNK 97 (115)
T ss_dssp -----EEEEEEESST
T ss_pred -----EEEEEcCCcC
Confidence 4555544433
No 164
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=47.26 E-value=23 Score=31.43 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=51.3
Q ss_pred eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCC----CCCCCceEEEEcCc-----ccCC-CCcccccCC
Q 033923 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENG----PKTVNNVQLIHAGK-----ILED-NMTIAESRL 75 (108)
Q Consensus 6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~----p~~~~~qRLIy~Gk-----~L~D-~~tL~~~~i 75 (108)
.+.|-+-+.+|..+. ++++.+.|+.++|+.++.+... .| =.+++.-.+.|-.+ .+.| .+.|-++.+
T Consensus 42 ~i~vd~LLPnGi~i~-l~v~~~~tl~~iK~~lw~~a~~---~pl~~~l~~~~~y~f~~~~~~~~~Ee~~De~~~l~d~~~ 117 (1091)
T 3hhm_A 42 RILVECLLPNGMIVT-LECLREATLITIKHELFKEARK---YPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRL 117 (1091)
T ss_dssp -EEEEEECTTSCEEE-EEEETTCBHHHHHHHHHHHGGG---STTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBTTTSCB
T ss_pred ceEEEEEcCCCeEEE-EEecCCCcHHHHHHHHHHHHHh---CcchhhcCChhHeEEEEEccCceEeeeecCceeeEEeec
Confidence 378899999999887 9999999999999999976431 11 12255666666554 3333 345655553
Q ss_pred CCCCCCCcceEEEEEecCC
Q 033923 76 PVVELPGTAITMHVVLRPS 94 (108)
Q Consensus 76 ~~~~~~~~~~tvhlv~~~~ 94 (108)
--. .+.|+.+..
T Consensus 118 ~~~-------~l~lve~~~ 129 (1091)
T 3hhm_A 118 FQP-------FLKVIEPVG 129 (1091)
T ss_dssp SSS-------EEEEECCCS
T ss_pred cce-------eEEEEecCC
Confidence 311 677766653
No 165
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=46.91 E-value=47 Score=20.24 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=18.3
Q ss_pred eEeC--CcchHHHHHHHHHhhCCC
Q 033923 22 SKFS--PTTTVASLKEKIISRWPK 43 (108)
Q Consensus 22 l~v~--~~~TV~~LK~~I~~~~~~ 43 (108)
++++ ...||++|.+.+.++.+.
T Consensus 24 ~~l~~~~~~Tv~~L~~~L~~~~~~ 47 (99)
T 2qjl_A 24 IKMDKEDPVTVGDLIDHIVSTMIN 47 (99)
T ss_dssp EEECSCSCCBHHHHHHHHHHHTCS
T ss_pred EecCCCCCCcHHHHHHHHHHHCch
Confidence 6666 678999999999998863
No 166
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=45.64 E-value=32 Score=26.61 Aligned_cols=61 Identities=20% Similarity=0.127 Sum_probs=40.7
Q ss_pred EEEEEe------CCCCeeeeeEeCCcchHHHHHHHHH--hhCCCCCcCCCCCCCceEE--EE----cCcccCCCCccccc
Q 033923 8 ELKFRL------ADGADIGPSKFSPTTTVASLKEKII--SRWPKEKENGPKTVNNVQL--IH----AGKILEDNMTIAES 73 (108)
Q Consensus 8 ~i~~r~------~~g~~~~~l~v~~~~TV~~LK~~I~--~~~~~~~~i~p~~~~~qRL--Iy----~Gk~L~D~~tL~~~ 73 (108)
-++|+. ++|.... +.++.++||+++-..|. .+.| +.+.+++..=| .+ ..+.|..+.+|.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~k~-v~~d~~ttV~dVi~~i~~~~kiG----~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v 97 (392)
T 4eku_A 23 ILKVCFYSNSFNPGKNFKL-VKCTVQTEIREIITSILLSGRIG----PNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEV 97 (392)
T ss_dssp EEEEEECCSSSCGGGEEEE-EEEETTCBHHHHHHHHHHTTTTC----SSCCCGGGEEEEEEESSSCCEEEECTTSBHHHH
T ss_pred eEEEEecccccCCCCCeEE-EEeCCCCcHHHHHHHHHHHhhcC----CCcCccceEEEEEEECCCCceEECCCCCcHHHH
Confidence 466777 5666655 99999999999999988 4555 22222444444 33 22577888888774
No 167
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=43.48 E-value=51 Score=19.63 Aligned_cols=63 Identities=5% Similarity=0.018 Sum_probs=36.9
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCc--CC-C--C-C-CCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEEEEecC
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKE--NG-P--K-T-VNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRP 93 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~--i~-p--~-~-~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv~~~ 93 (108)
++. ...||++|.+.+..+++. +. +. . . . ....++.-+|+...+..-+ +.-+++|+ .|.++..-
T Consensus 21 ~~~-~~~Tv~~ll~~L~~~~p~-l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gD------eV~i~Ppv 90 (93)
T 3dwg_C 21 VSA-SGDTLGAVISDLEANYSG-ISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGD------SVTILPAV 90 (93)
T ss_dssp EEE-CCSBHHHHHHHHHHHSTT-HHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTC------EEEEEECC
T ss_pred Eec-CCCCHHHHHHHHHHHChh-HHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCC------EEEEECCC
Confidence 665 457999999999988762 10 00 0 0 0 1246777788766542222 34578887 66555443
No 168
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=42.05 E-value=56 Score=19.76 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=23.4
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHH
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKE 35 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~ 35 (108)
+.+.|+|...+|.... +++.+.+|+-+.-+
T Consensus 2 ~~~~v~~~~~~g~~~~-~~~~~g~tlL~a~~ 31 (103)
T 2wlb_A 2 TGIKVFFVTPEGREIM-IEGNEGDSILDLAH 31 (103)
T ss_dssp CCEEEEEECTTCCEEE-EEECTTCBHHHHHH
T ss_pred CceEEEEEeCCCCEEE-EEECCCCHHHHHHH
Confidence 4678888778887776 99999999877543
No 169
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=37.57 E-value=45 Score=24.41 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=29.2
Q ss_pred eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCC
Q 033923 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWP 42 (108)
Q Consensus 6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~ 42 (108)
..-|+|-+.+|.... +.|++++|+++|=+.+..+..
T Consensus 8 ~~ivkv~~~d~ss~~-l~V~~~mta~ev~~~l~~k~~ 43 (256)
T 3hk0_A 8 KQDVKVFSEDGTSKV-VEILADMTARDLCQLLVYKSH 43 (256)
T ss_dssp CEEEEEEETTSCEEE-EEECTTCBHHHHHHHHHCCC-
T ss_pred ceEEEEEecCCcEEE-EEECCCCCHHHHHHHHHHhcC
Confidence 345777778998887 999999999999888886543
No 170
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=37.45 E-value=55 Score=18.33 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=33.4
Q ss_pred CCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 14 ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 14 ~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
.+|+. +++....||.+|.+.+ + ++ .....+..+|+++..+ ...+..+++||
T Consensus 5 vNg~~---~~~~~~~tv~~ll~~l----~----~~---~~~v~vavN~~~v~~~-~~~~~~L~~gD 55 (66)
T 1f0z_A 5 FNDQA---MQCAAGQTVHELLEQL----D----QR---QAGAALAINQQIVPRE-QWAQHIVQDGD 55 (66)
T ss_dssp ESSCE---ECCCTTCCHHHHHHHH----T----CC---CSSEEEEETTEEECHH-HHTTCCCCTTE
T ss_pred ECCEE---EEcCCCCcHHHHHHHc----C----CC---CCCEEEEECCEECCch-hcCCcCCCCCC
Confidence 35664 5677788999998877 2 33 5667788888887532 12234567776
No 171
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=35.15 E-value=69 Score=22.54 Aligned_cols=36 Identities=6% Similarity=0.112 Sum_probs=29.7
Q ss_pred eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCC
Q 033923 6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWP 42 (108)
Q Consensus 6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~ 42 (108)
.+.|+|=..+|.... +.+++++|+.+|-+.|..+..
T Consensus 34 k~~v~v~~~d~~~k~-i~v~~~~ta~ev~~~L~~k~~ 69 (291)
T 3tca_A 34 KLVVKVHMDDSSTKS-LMVDERQLARDVLDNLFEKTH 69 (291)
T ss_dssp EEEEEEECTTSCEEE-EEEETTCBHHHHHHHHHHHHC
T ss_pred ceEEEEEcCCCceEE-EEeCCCCcHHHHHHHHHHHhC
Confidence 455666667888777 999999999999999988766
No 172
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=33.87 E-value=43 Score=22.74 Aligned_cols=60 Identities=17% Similarity=0.335 Sum_probs=39.9
Q ss_pred CcchHHHHHHHHHhhCCCCCcCC-CCCCCceEE-----------------EEcCccc-CCCCcccccCCCCCCCCCcceE
Q 033923 26 PTTTVASLKEKIISRWPKEKENG-PKTVNNVQL-----------------IHAGKIL-EDNMTIAESRLPVVELPGTAIT 86 (108)
Q Consensus 26 ~~~TV~~LK~~I~~~~~~~~~i~-p~~~~~qRL-----------------Iy~Gk~L-~D~~tL~~~~i~~~~~~~~~~t 86 (108)
.+.|..+|-..|.+..+.. + +-.-=..|+ ++.|+-- +|+.||.+++..-|+ .
T Consensus 62 ~daTLrEL~~Lvk~~~p~a---r~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGD------y 132 (143)
T 4a6q_A 62 MDATLKELTSLVKEVYPEA---RKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGD------Y 132 (143)
T ss_dssp TTCBHHHHHHHHHHHCGGG---GSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTC------E
T ss_pred CCCCHHHHHHHHHHhCccc---cCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCC------E
Confidence 7899999999999887631 1 000112233 3444433 578999999999998 7
Q ss_pred EEEEecCC
Q 033923 87 MHVVLRPS 94 (108)
Q Consensus 87 vhlv~~~~ 94 (108)
|-+.+-|+
T Consensus 133 idvaI~pP 140 (143)
T 4a6q_A 133 LDIAITPP 140 (143)
T ss_dssp EEEEEECG
T ss_pred EEEEEeCC
Confidence 77777654
No 173
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=33.73 E-value=81 Score=19.18 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=38.2
Q ss_pred eEEEEEEeC------CCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCC--CC----Cce-------EEEEcCcccCC
Q 033923 6 LIELKFRLA------DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPK--TV----NNV-------QLIHAGKILED 66 (108)
Q Consensus 6 ~i~i~~r~~------~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~--~~----~~q-------RLIy~Gk~L~D 66 (108)
++.|+|++. .|.. .++++ ..||.+|.+.+...++. +... +. ..+ .+..+|+....
T Consensus 3 mm~v~V~~fa~lr~~~g~~--~~~l~-~~tv~~ll~~L~~~~p~---l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~ 76 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTP--ELPLS-GEKVIDVLLSLTDKYPA---LKYVIFEKGDEKSEILILCGSINILINGNNIRH 76 (99)
T ss_dssp CCEEEEEECTHHHHHHSSS--EEEEE-CSSHHHHHHHHHHHCGG---GTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGG
T ss_pred ceEEEEEEeHHHHHHhCCC--eEEEe-CCcHHHHHHHHHHHChh---HHHHHhcccccccceeccccccEEEECCEEccc
Confidence 457777775 2432 14444 68999999999988652 1100 00 123 67778876632
Q ss_pred CCcccccCCCCCC
Q 033923 67 NMTIAESRLPVVE 79 (108)
Q Consensus 67 ~~tL~~~~i~~~~ 79 (108)
... .+..+++||
T Consensus 77 ~~~-~~~~L~~gD 88 (99)
T 2l52_A 77 LEG-LETLLKDSD 88 (99)
T ss_dssp TTS-TTSCCCTTE
T ss_pred cCC-CCCCCCCCC
Confidence 211 234577777
No 174
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=32.43 E-value=41 Score=24.79 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=35.0
Q ss_pred ceEEEEEEeCCCCeeeeeEeCC--cchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCc
Q 033923 5 DLIELKFRLADGADIGPSKFSP--TTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK 62 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~--~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk 62 (108)
+...|.|-+++|..+. ++++. ++|+.+|-++ .+ +++...+..=|.+...
T Consensus 4 ~~~~i~V~l~dg~~~~-~~i~~~~~tt~~el~e~----lg----L~~~~~~~FaL~~~~~ 54 (322)
T 4dxa_B 4 EFEKVRIYRMDGSYRS-VELKHGNNTTVQQIMEG----MR----LSQETQQYFTIWICSE 54 (322)
T ss_dssp -CCEEEEECTTSCEEE-EECTTGGGCCHHHHHTT----SS----CCTTGGGGEEEEEECS
T ss_pred CceEEEEEEECCcEEE-EEEcCCCCCcHHHHHHH----hC----cCccccCeeEEEEECC
Confidence 4567889999999887 99998 9999999543 44 4333356677766543
No 175
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=30.83 E-value=72 Score=19.86 Aligned_cols=58 Identities=12% Similarity=0.156 Sum_probs=39.2
Q ss_pred ceEEEEEEeCCCC----eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCc-cc-CCCCccccc
Q 033923 5 DLIELKFRLADGA----DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK-IL-EDNMTIAES 73 (108)
Q Consensus 5 ~~i~i~~r~~~g~----~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk-~L-~D~~tL~~~ 73 (108)
..|.|.|+-.... ... +.|+.+.|++++...|..+.. .+.+=| |-+. .+ .-++++++.
T Consensus 12 ~KV~V~~~~~~~~P~l~k~K-flV~~~~t~~~~~~~lRkrL~---------l~alFl-yvn~~~~Ps~d~~m~~L 75 (96)
T 1wz3_A 12 QKIVVHLRATGGAPILKQSK-FKVSGSDKFANVIDFLRRQLH---------SDSLFV-YVNSAFSPNPDESVIDL 75 (96)
T ss_dssp CEEEEEEEECTTCCCCSCCE-EEEETTSBTHHHHHHHHHHHT---------CSSCEE-EEEEEECCCTTSBHHHH
T ss_pred CeEEEEEEECCCCCcccccE-EEeCCCCcHHHHHHHHHHhcC---------CceEEE-EECCcccCChhhHHHHH
Confidence 3788888876431 122 789999999999999998876 223333 5555 54 456777763
No 176
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=30.57 E-value=66 Score=19.14 Aligned_cols=32 Identities=19% Similarity=0.041 Sum_probs=24.9
Q ss_pred EEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCC
Q 033923 8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWP 42 (108)
Q Consensus 8 ~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~ 42 (108)
+|++.+.+|.. ++++...|+.++-..|....+
T Consensus 7 ~i~v~tP~G~~---~~lp~GaT~~D~A~~Ih~~lg 38 (78)
T 3hvz_A 7 EVFVFTPKGDV---ISLPIGSTVIDFAYAIHSAVG 38 (78)
T ss_dssp EEEEECTTSCE---EEEETTCBHHHHHHHHCHHHH
T ss_pred eEEEECCCCCE---EEecCCCCHHHHHHHhhhhhh
Confidence 56777899974 778899999999888765544
No 177
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=29.75 E-value=72 Score=19.49 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=22.5
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHH
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASL 33 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~L 33 (108)
...+.|+|...+|.... +++.+.+|+.+.
T Consensus 4 ~~m~~V~~~~~~g~~~~-v~~~~g~tLL~a 32 (108)
T 2bt6_A 4 GDKITVHFINRDGETLT-TKGKIGDSLLDV 32 (108)
T ss_dssp -CEEEEEEECTTSCEEE-EEEETTCBHHHH
T ss_pred CceEEEEEECCCCCEEE-EEECCCChHHHH
Confidence 45678888778898776 889999988764
No 178
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=28.51 E-value=1.1e+02 Score=19.23 Aligned_cols=51 Identities=10% Similarity=-0.010 Sum_probs=32.6
Q ss_pred eEEEEEEeCC-------CCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCC-C-CCceEEEEcC
Q 033923 6 LIELKFRLAD-------GADIGPSKFSPTTTVASLKEKIISRWPKEKENGPK-T-VNNVQLIHAG 61 (108)
Q Consensus 6 ~i~i~~r~~~-------g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~-~-~~~qRLIy~G 61 (108)
.+.||+...+ +..+. +.++++.+-.+|..+|..+.+ .+.. + ....||-|.-
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~-i~V~~~i~f~~L~~kI~~Kl~----~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFT-LLVEKVWNFDDLIMAINSKIS----NTHNNNISPITKIKYQD 64 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEE-EEECTTCCHHHHHHHHHHHHH----HHCSSCCCCCCCEEEEC
T ss_pred cEEEEEEecCcccccccCcEEE-EEecCCCCHHHHHHHHHHHHc----CCccccccceeEEEEEc
Confidence 3555555442 33344 999999999999999998876 2201 0 1346776765
No 179
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=28.06 E-value=89 Score=20.12 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=24.3
Q ss_pred CCceEEEEEEeCCCCeeeeeEeCCcchHHHH
Q 033923 3 GEDLIELKFRLADGADIGPSKFSPTTTVASL 33 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~L 33 (108)
...+..|+|...+|.... +++.+.+|+.+.
T Consensus 18 ~~~M~~Vt~~~~~G~~~~-v~~~~G~tLL~a 47 (126)
T 3hui_A 18 GSHMAKINFVDHTGETRT-VEVEEGATVMEA 47 (126)
T ss_dssp TCSEEEEEEECTTSCEEE-EEEETTSBHHHH
T ss_pred CCCceEEEEEeCCCCEEE-EEECCCCcHHHH
Confidence 356778899878997776 899999998874
No 180
>4eo0_A Attachment protein G3P; filamentuos phage, infection, pilus binding, gene-3-protein, receptor binding, N-pilus; 1.61A {Enterobacteria phage ike}
Probab=27.96 E-value=68 Score=20.50 Aligned_cols=25 Identities=16% Similarity=0.441 Sum_probs=19.3
Q ss_pred HHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccC
Q 033923 32 SLKEKIISRWPKEKENGPKTVNNVQLIHAGKILE 65 (108)
Q Consensus 32 ~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~ 65 (108)
++|--++.-|| -+++||+|.|-+.-
T Consensus 58 qik~t~~g~wp---------~s~frlv~~~~c~y 82 (115)
T 4eo0_A 58 QIKLTLSGTWP---------NSQFRLVTGDTCVY 82 (115)
T ss_dssp HHHHHHHHHCT---------TCCEEEEECSSCEE
T ss_pred hcccceecccC---------CceEEEEeCCceee
Confidence 46666677777 68999999998763
No 181
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=27.93 E-value=88 Score=17.78 Aligned_cols=54 Identities=7% Similarity=0.021 Sum_probs=34.8
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCc--CCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEEEEe
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKE--NGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVL 91 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~--i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv~ 91 (108)
++ ....||++|.+.+...++. +. +. .....+..+|+.... +..+++|+ .|.++.
T Consensus 21 ~~-~~~~tv~~ll~~L~~~~p~-~~~~l~---~~~~~v~vN~~~v~~-----~~~l~~gD------~V~i~P 76 (81)
T 1fm0_D 21 VA-ADFPTVEALRQHMAAQSDR-WALALE---DGKLLAAVNQTLVSF-----DHPLTDGD------EVAFFP 76 (81)
T ss_dssp EC-SCCSBHHHHHHHHHTTCHH-HHHHHC---CTTCEEEETTEECCT-----TCBCCTTC------EEEEEC
T ss_pred Ec-CCCCCHHHHHHHHHHHChh-HHHHhc---CCCEEEEECCEECCC-----CCCCCCCC------EEEEeC
Confidence 44 4677999999999876541 10 11 234578888887753 44577787 665553
No 182
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=27.46 E-value=1.4e+02 Score=19.86 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=45.5
Q ss_pred CCceEEEEEEeCCCC----eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCC
Q 033923 3 GEDLIELKFRLADGA----DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVV 78 (108)
Q Consensus 3 ~~~~i~i~~r~~~g~----~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~ 78 (108)
.++.+.|.|++...+ .+. +.++.++ -. .. .+ +-.+||-+-|.+.+|+..=+.|....+
T Consensus 11 d~e~viV~Ik~P~~~~~~sdie-i~v~~~~--F~--------F~----~~---PYyLRL~LP~~V~e~~~~kA~YD~d~~ 72 (134)
T 2k8q_A 11 DEEFIFLKIFISNIRFSAVGLE-IIIQENM--II--------FH----LS---PYYLRLRFPHELIDDERSTAQYDSKDE 72 (134)
T ss_dssp CSSEEEEEEECCSSCCCSSSCC-CEECSSS--EE--------EC----SS---SSCEEECCSSCEECCSSCEEEEETTTT
T ss_pred CCCEEEEEEEcCccccCccccE-EEEeCCE--EE--------Ee----cC---CeEEEecCCCeeecCCCcceeEeccCC
Confidence 356788888887666 333 4444332 11 11 24 799999999999999888888988766
Q ss_pred CCCCcceEEEEEecCCC
Q 033923 79 ELPGTAITMHVVLRPSL 95 (108)
Q Consensus 79 ~~~~~~~tvhlv~~~~~ 95 (108)
. .+|+|-...++
T Consensus 73 ~-----~~VtLpK~~~G 84 (134)
T 2k8q_A 73 C-----INVKVAKLNKN 84 (134)
T ss_dssp E-----EEEEEEESSTT
T ss_pred E-----EEEEEeCCCCC
Confidence 3 44554443333
No 183
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=27.46 E-value=87 Score=19.15 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=22.3
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHH
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASL 33 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~L 33 (108)
+.+.|+|...+|.... +++.+.+|+-+.
T Consensus 4 ~m~~v~~~~~~g~~~~-~~~~~g~tlL~a 31 (109)
T 2y5c_A 4 DVVNVVFVDRSGQRIP-VSGRVGDNVLHL 31 (109)
T ss_dssp CEEEEEEECTTSCEEE-EEEETTCBHHHH
T ss_pred CcEEEEEEcCCCCEEE-EEECCCCcHHHH
Confidence 3567888778998876 889999998774
No 184
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=27.40 E-value=1.1e+02 Score=18.59 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=34.0
Q ss_pred CCCCeeeeeEeCCc-chHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923 14 ADGADIGPSKFSPT-TTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE 79 (108)
Q Consensus 14 ~~g~~~~~l~v~~~-~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~ 79 (108)
.+|+. ++++.. .||.+|.+.+ + ++ +..+.+..+|+++..+ ...+..+++||
T Consensus 25 vNGe~---~el~~~~~Tv~dLL~~L----~----~~---~~~vaVavNg~iV~~~-~~~~~~L~dGD 76 (87)
T 1tyg_B 25 LNGKD---VKWKKDTGTIQDLLASY----Q----LE---NKIVIVERNKEIIGKE-RYHEVELCDRD 76 (87)
T ss_dssp ETTEE---ECCSSSCCBHHHHHHHT----T----CT---TSCCEEEETTEEECGG-GTTTSBCCSSS
T ss_pred ECCEE---EECCCCCCcHHHHHHHh----C----CC---CCCEEEEECCEECChh-hcCCcCCCCCC
Confidence 35653 567776 8999998875 3 34 5667788899887532 23345577787
No 185
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=25.99 E-value=88 Score=19.16 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=21.8
Q ss_pred EEEEEeCCCCeeeeeEeCCcchHHHHH
Q 033923 8 ELKFRLADGADIGPSKFSPTTTVASLK 34 (108)
Q Consensus 8 ~i~~r~~~g~~~~~l~v~~~~TV~~LK 34 (108)
+|+|...+|.... +++.+.+|+.+.-
T Consensus 2 ~vt~~~~~G~~~~-~~~~~g~tll~a~ 27 (104)
T 3lxf_A 2 AILVTTRDGTRTE-IQAEPGLSLMEAL 27 (104)
T ss_dssp EEEEECTTSCEEE-EECCTTSBHHHHH
T ss_pred EEEEEeCCCCEEE-EEECCCChHHHHH
Confidence 5788888999887 9999999998754
No 186
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=24.14 E-value=1.3e+02 Score=18.93 Aligned_cols=27 Identities=7% Similarity=0.090 Sum_probs=18.9
Q ss_pred CCCeeeeeEeCC----cchHHHHHHHHHhhCC
Q 033923 15 DGADIGPSKFSP----TTTVASLKEKIISRWP 42 (108)
Q Consensus 15 ~g~~~~~l~v~~----~~TV~~LK~~I~~~~~ 42 (108)
-|+... ++++. ..||++|-+.|.+.++
T Consensus 19 ~g~~~~-v~l~~~~g~~~TV~dLl~~L~~~~~ 49 (110)
T 2k9x_A 19 FAKQTS-LQLDGVVPTGTNLNGLVQLLKTNYV 49 (110)
T ss_dssp TTSCSE-ECCCCSCGGGCCHHHHHHHHTTTTC
T ss_pred hCCeEE-EEeCCcCCCCccHHHHHHHHHHHcc
Confidence 345444 66663 3599999999998875
No 187
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=24.12 E-value=62 Score=24.45 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=40.5
Q ss_pred EEEEeCCCC----eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEE--c--C--cccCCCCcccc
Q 033923 9 LKFRLADGA----DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH--A--G--KILEDNMTIAE 72 (108)
Q Consensus 9 i~~r~~~g~----~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy--~--G--k~L~D~~tL~~ 72 (108)
++|.+.+|. ... +.+++++|+.+|=..|....+ +. +.+..=|.+ . | ..|..+.+|++
T Consensus 10 l~V~l~~g~~~~~~~~-~~~~~~tt~~dl~~~v~~~lg----L~--~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 76 (375)
T 2al6_A 10 FHYFENSSEPTTWASI-IRHGDATDVRGIIQKIVDCHK----VK--NVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (375)
T ss_dssp ECCCCCSSCGGGCEEE-EEECTTCBHHHHHHHHHHHTT----CS--CGGGEEEEEEETTSSCEEEECTTSBHHH
T ss_pred EEEEecCCCCCCceEE-EEeCCCCCHHHHHHHHHHHcC----CC--eEeEEEEEEEEcCCCceEeeCCccchhh
Confidence 346667775 666 999999999999999999988 42 255555554 2 2 24677777765
No 188
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=23.58 E-value=1.6e+02 Score=19.24 Aligned_cols=38 Identities=11% Similarity=0.132 Sum_probs=30.9
Q ss_pred CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCC
Q 033923 4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWP 42 (108)
Q Consensus 4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~ 42 (108)
.+.+..+|-..+...++ +.+..+.|+.+++..++++.+
T Consensus 7 ~Dei~~~VY~~Dhsy~t-vr~~v~~sa~eIl~~va~kl~ 44 (120)
T 2dhz_A 7 GDEIFCRVYMPDHSYVT-IRSRLSASVQDILGSVTEKLQ 44 (120)
T ss_dssp CCCEEECEECTTSCCCC-EEECTTCCHHHHHHHHHHHST
T ss_pred CCcEEEEEEeccCceEE-EEEeccccHHHHHHHHHHHhc
Confidence 34566666667887777 899999999999999998876
No 189
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=23.18 E-value=1.1e+02 Score=19.59 Aligned_cols=37 Identities=5% Similarity=0.074 Sum_probs=29.7
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCC
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWP 42 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~ 42 (108)
+.+-.+|-..+...++ +.+..+.|+.+++..++++.+
T Consensus 8 D~i~~~Vy~~Dhsy~t-vr~~v~~sa~eIl~~va~kl~ 44 (104)
T 1wgy_A 8 EEIFCHVYITEHSYVS-VKAKVSSIAQEILKVVAEKIQ 44 (104)
T ss_dssp SCCCEEEECSSSCEEE-ECCCTTCBSHHHHHHHHHHHT
T ss_pred CceEEEEEeccCceEE-EEEeccchHHHHHHHHHHHhc
Confidence 3455566667887777 899999999999999998876
No 190
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=21.54 E-value=1.7e+02 Score=18.73 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=27.5
Q ss_pred ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCC
Q 033923 5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWP 42 (108)
Q Consensus 5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~ 42 (108)
.++.|||-.... +. .+.|+..-+-.+|..++...+|
T Consensus 7 ~dvRiKfE~~GE-kR-Ii~f~RPv~f~eL~~Kv~~~fG 42 (103)
T 2cu1_A 7 GDVRVKFEHRGE-KR-ILQFPRPVKLEDLRSKAKIAFG 42 (103)
T ss_dssp CEEEEEEEETTE-EE-EEEEESSCCHHHHHHHHHHHHS
T ss_pred CcEEEEEEecCe-EE-EEeccCCccHHHHHHHHHHHhC
Confidence 355666654333 33 4999999999999999999998
No 191
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=21.31 E-value=1.2e+02 Score=17.70 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=19.5
Q ss_pred EEEEEEeCCCCeeeeeEeCCcchHHHHHH
Q 033923 7 IELKFRLADGADIGPSKFSPTTTVASLKE 35 (108)
Q Consensus 7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~ 35 (108)
+.|+|...+| ... +++++.+|+-+.-+
T Consensus 2 ~~v~~~~~~g-~~~-~~~~~g~tlL~a~~ 28 (95)
T 1frr_A 2 YKTVLKTPSG-EFT-LDVPEGTTILDAAE 28 (95)
T ss_dssp EEEEEEETTE-EEE-EEECTTCCHHHHHH
T ss_pred eEEEEEeCCC-cEE-EEeCCCCcHHHHHH
Confidence 4677766777 455 88999999987543
No 192
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=20.82 E-value=1.9e+02 Score=19.54 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=36.9
Q ss_pred eEeCCcchHHHHHHHHHhhCCCCCcCCCC---C---CCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEEEEec
Q 033923 22 SKFSPTTTVASLKEKIISRWPKEKENGPK---T---VNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLR 92 (108)
Q Consensus 22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~---~---~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv~~ 92 (108)
++++. .||.+|.+.+...++. +... + ...+.+.-+|+......-+ +..+++|| .|-++..
T Consensus 18 ~ev~~-~TV~dLl~~L~~~~p~---l~~~l~~~~~l~~~v~VaVNg~~v~~~~~~-dt~L~dGD------eVai~Pp 83 (168)
T 1v8c_A 18 LELPG-ATVGEVLENLVRAYPA---LKEELFEGEGLAERVSVFLEGRDVRYLQGL-STPLSPGA------TLDLFPP 83 (168)
T ss_dssp EECCC-SBHHHHHHHHHHHCGG---GHHHHEETTEECTTCEEEETTEEGGGTTGG-GCBCCTTC------EEEEECS
T ss_pred EEECC-CcHHHHHHHHHhhChh---hhhhhhcccccCCcEEEEECCEECCCcCCC-ccCCCCCC------EEEEECc
Confidence 56665 8999999999887652 1100 0 1345677888877543222 34578887 6655443
Done!