Query 033924
Match_columns 108
No_of_seqs 111 out of 193
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 13:03:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_Z 60S ribosomal protein L 100.0 1.2E-30 4.1E-35 196.5 -3.3 106 1-108 56-162 (162)
2 2zkr_u 60S ribosomal protein L 99.9 1.6E-28 5.4E-33 184.1 0.2 103 1-104 54-156 (157)
3 4a17_T RPL24, 60S ribosomal pr 99.9 2.8E-27 9.5E-32 177.6 -0.7 94 1-95 56-155 (158)
4 3izc_Z 60S ribosomal protein R 99.9 2.6E-25 8.8E-30 166.5 -3.6 95 1-96 54-153 (155)
5 4f6r_C Stathmin-like domain R1 43.6 50 0.0017 22.2 5.0 36 32-67 41-76 (87)
6 1q08_A Zn(II)-responsive regul 25.0 29 0.00099 21.7 1.4 12 31-42 15-26 (99)
7 1b0n_B Protein (SINI protein); 20.4 42 0.0014 20.7 1.4 13 31-43 25-37 (57)
8 3iuo_A ATP-dependent DNA helic 19.1 55 0.0019 22.0 1.9 24 27-50 27-50 (122)
9 1win_A Flotillin 2; BAND 7 dom 10.4 1E+02 0.0035 20.8 1.3 18 27-44 76-94 (143)
10 3ryc_E Stathmin-4; alpha-tubul 8.2 5.7E+02 0.02 18.3 4.6 29 32-60 42-70 (143)
No 1
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=99.95 E-value=1.2e-30 Score=196.49 Aligned_cols=106 Identities=86% Similarity=1.190 Sum_probs=18.7
Q ss_pred ChhhcccchHHHHHHHhhhhccCCCcccCccccCHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhHhhHHHHHhhhhhhhh
Q 033924 1 MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTS 80 (108)
Q Consensus 1 lyRR~hKKg~~ee~~kKr~rk~~k~~qRaIvGaSLe~I~~kRnqkpevR~A~Re~AireaKekkkakk~~kKa~ka~~~~ 80 (108)
+||++|+||+++|++.+++|++.++|||+|||+|||+|+++|||+||||.|+||+||+++||+++++++++++++++.++
T Consensus 56 ~yRr~~kK~~~~e~~~krrR~~~~k~qRaivg~sL~~I~~kRnqkpevR~A~Re~air~~Kekkka~~a~kka~~a~~~~ 135 (162)
T 3iz5_Z 56 MYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAK 135 (162)
T ss_dssp SCCCCCCCCCCSSSSSSSCC------------------------------------------------------------
T ss_pred HHHHHhccchhhHHHHHHHhcCCccccHHHHHhhHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 69999999999999988888888789999999999999999999999999999999999999999999999999988887
Q ss_pred hhhhccCCCC-CCCCCCCCCccCCCCCCC
Q 033924 81 KSKTQSKGSM-PKGAAPKGPKLGGGGGKR 108 (108)
Q Consensus 81 ~~k~~~k~~~-~k~~~~~~p~~gg~~~~~ 108 (108)
.++.+.++.. ++.. .+|.+||+||.+
T Consensus 136 ~~k~~~~~~~~~~~~--~~~~~~~~~~~~ 162 (162)
T 3iz5_Z 136 SQKTQSKGGATQRGA--KGPKIGGGGGKR 162 (162)
T ss_dssp -----------------------------
T ss_pred ccccccccccCcccC--CCCCCCCCCCCC
Confidence 7788888877 7766 899999999875
No 2
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.94 E-value=1.6e-28 Score=184.12 Aligned_cols=103 Identities=36% Similarity=0.565 Sum_probs=2.6
Q ss_pred ChhhcccchHHHHHHHhhhhccCCCcccCccccCHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhHhhHHHHHhhhhhhhh
Q 033924 1 MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTS 80 (108)
Q Consensus 1 lyRR~hKKg~~ee~~kKr~rk~~k~~qRaIvGaSLe~I~~kRnqkpevR~A~Re~AireaKekkkakk~~kKa~ka~~~~ 80 (108)
+||++|+||+++|+.++|+++++ +|||+|||+|||+|+++|||+||||.|+||+||+++||+++++++.++++++...+
T Consensus 54 ~yRr~~kK~~~~e~~KkR~r~~v-K~~R~ivg~sl~~I~~kR~qkpevr~a~r~~ai~~~Ke~kk~~~~~kk~~~~~~~~ 132 (157)
T 2zkr_u 54 LYRRKHKKGQSEEIQKKRTRRAV-KFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKA 132 (157)
T ss_dssp TTC-----------------------------------------------------------------------------
T ss_pred HHHHHhcchHHHHHHHHHhcCcc-ceeHHHHHhhHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 69999999999999999999998 69999999999999999999999999999999999999999999999987654444
Q ss_pred hhhhccCCCCCCCCCCCCCccCCC
Q 033924 81 KSKTQSKGSMPKGAAPKGPKLGGG 104 (108)
Q Consensus 81 ~~k~~~k~~~~k~~~~~~p~~gg~ 104 (108)
..+..+++..+++....+|+|||+
T Consensus 133 ~~~~~~~~k~~k~~~k~a~~v~g~ 156 (157)
T 2zkr_u 133 PTKAAPKQKIVKPVKVSAPRVGGK 156 (157)
T ss_dssp ------------------------
T ss_pred ccccchhhhccccccccCCCCCCC
Confidence 334455566677777788999975
No 3
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=99.92 E-value=2.8e-27 Score=177.59 Aligned_cols=94 Identities=26% Similarity=0.345 Sum_probs=6.4
Q ss_pred ChhhcccchHHHHHHHhhhhccCCCcccCccccCHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhHhhHHHHHhhhhhhhh
Q 033924 1 MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTS 80 (108)
Q Consensus 1 lyRR~hKKg~~ee~~kKr~rk~~k~~qRaIvGaSLe~I~~kRnqkpevR~A~Re~AireaKekkkakk~~kKa~ka~~~~ 80 (108)
+||++|+||+++|++++|+++++ +|||+|||+|||+|+++|||+||||.|+||+||+++||+++++++.++++++..++
T Consensus 56 ~yRr~~kK~~~~e~~kkr~~r~v-K~~R~ivg~sl~~I~~kR~qkpe~r~a~re~ai~~~Kekkka~~~~kka~~a~~~~ 134 (158)
T 4a17_T 56 ARRRLWKKVKATDIAQKKKKRNV-TVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGK 134 (158)
T ss_dssp HHHHHHC-------------------------------------------------------------------------
T ss_pred HHHHHhCCcchHHHHHHHhcCCc-ccchhhhhhhHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 59999999999999999999998 79999999999999999999999999999999999999999999999998876654
Q ss_pred hh------hhccCCCCCCCCC
Q 033924 81 KS------KTQSKGSMPKGAA 95 (108)
Q Consensus 81 ~~------k~~~k~~~~k~~~ 95 (108)
.+ +++++|.+++|.+
T Consensus 135 ~~~~~~~~k~~~kg~~~k~~~ 155 (158)
T 4a17_T 135 DVKAAKKAETKKTKQPVGAKG 155 (158)
T ss_dssp ---------------------
T ss_pred cchhhhHhhhhcccccccccc
Confidence 32 6788888888754
No 4
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=99.88 E-value=2.6e-25 Score=166.47 Aligned_cols=95 Identities=44% Similarity=0.642 Sum_probs=19.0
Q ss_pred ChhhcccchHHHHHHHhhhhccCCCcccCccccCHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhHhhHHHHHhhhhhhhh
Q 033924 1 MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTS 80 (108)
Q Consensus 1 lyRR~hKKg~~ee~~kKr~rk~~k~~qRaIvGaSLe~I~~kRnqkpevR~A~Re~AireaKekkkakk~~kKa~ka~~~~ 80 (108)
+||++|+||+++|++++|+++++ +|||+|||+|||+|+++|||+||+|.++|+++|+++||+++++++.++++++..++
T Consensus 54 ~yRr~~kK~~~~e~~kkR~~~~v-K~~R~ivg~sl~~Ik~~r~~k~e~r~a~r~~aik~~Kekkka~~~~kk~~~a~~~~ 132 (155)
T 3izc_Z 54 LFRKHHKKGITEEVAKKRSRKTV-KAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAG 132 (155)
T ss_dssp SCCCCCCCCCCCSCCCCCCC------------------------------------------------------------
T ss_pred HHHHHhCCchhhHHHHHHhcCCc-cchHHHHHhhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 69999999999999999999998 69999999999999999999999999999999999999999999999988876554
Q ss_pred hh-----hhccCCCCCCCCCC
Q 033924 81 KS-----KTQSKGSMPKGAAP 96 (108)
Q Consensus 81 ~~-----k~~~k~~~~k~~~~ 96 (108)
.. +++++|.+++|.++
T Consensus 133 ~~~~~~~~~~~kg~~~k~~~~ 153 (155)
T 3izc_Z 133 TQSSKFSKQQAKGAFQKVAAT 153 (155)
T ss_dssp ---------------------
T ss_pred ccchhhhhhhccccccccccc
Confidence 32 77888888887654
No 5
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=43.59 E-value=50 Score=22.20 Aligned_cols=36 Identities=33% Similarity=0.371 Sum_probs=25.0
Q ss_pred ccCHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhHhh
Q 033924 32 GATLEVIQKRRTEKPEVRDAAREAALREIKERIKKT 67 (108)
Q Consensus 32 GaSLe~I~~kRnqkpevR~A~Re~AireaKekkkak 67 (108)
.+|||+|+.+=..-.|-|.++-.+.|....++....
T Consensus 41 ~~SleeIqkKLeAAeERRks~EA~~L~~Laekreh~ 76 (87)
T 4f6r_C 41 DPSLEEIQKKLEAAEERRKAHFAAMLERLQEKDKHA 76 (87)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999998876667777777666666655554433
No 6
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=24.96 E-value=29 Score=21.68 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=10.1
Q ss_pred cccCHHHHHHHh
Q 033924 31 VGATLEVIQKRR 42 (108)
Q Consensus 31 vGaSLe~I~~kR 42 (108)
+|.||++|..-=
T Consensus 15 lGfsL~eIk~~l 26 (99)
T 1q08_A 15 LGFSLESIRELL 26 (99)
T ss_dssp TTCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 599999999863
No 7
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=20.40 E-value=42 Score=20.68 Aligned_cols=13 Identities=23% Similarity=0.105 Sum_probs=10.6
Q ss_pred cccCHHHHHHHhh
Q 033924 31 VGATLEVIQKRRT 43 (108)
Q Consensus 31 vGaSLe~I~~kRn 43 (108)
.|+||++|..--+
T Consensus 25 lGlsleEIrefL~ 37 (57)
T 1b0n_B 25 ANISPEEIRKYLL 37 (57)
T ss_dssp TTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHH
Confidence 6999999987643
No 8
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=19.07 E-value=55 Score=21.96 Aligned_cols=24 Identities=8% Similarity=-0.216 Sum_probs=18.4
Q ss_pred ccCccccCHHHHHHHhhcCHHHHH
Q 033924 27 SRSIVGATLEVIQKRRTEKPEVRD 50 (108)
Q Consensus 27 qRaIvGaSLe~I~~kRnqkpevR~ 50 (108)
+--=-|.||++|...|+-++.---
T Consensus 27 ~l~~~G~sleeIA~~R~L~~~TI~ 50 (122)
T 3iuo_A 27 QQIDRKVALDDIAVSHGLDFPELL 50 (122)
T ss_dssp HHHHTTCCHHHHHHHTTCCHHHHH
T ss_pred HHHHcCCCHHHHHHHcCCCHHHHH
Confidence 333469999999999999876543
No 9
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=10.37 E-value=1e+02 Score=20.80 Aligned_cols=18 Identities=44% Similarity=0.599 Sum_probs=13.4
Q ss_pred ccCccc-cCHHHHHHHhhc
Q 033924 27 SRSIVG-ATLEVIQKRRTE 44 (108)
Q Consensus 27 qRaIvG-aSLe~I~~kRnq 44 (108)
-|+++| ++|++|...|..
T Consensus 76 LR~viG~~tldeils~R~~ 94 (143)
T 1win_A 76 LRSILGTLTVEQIYQDRDQ 94 (143)
T ss_dssp HHHHHHHSCHHHHHHTHHH
T ss_pred HHHHHhcCCHHHHHHHHHH
Confidence 567776 789999986543
No 10
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=8.21 E-value=5.7e+02 Score=18.29 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=17.9
Q ss_pred ccCHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 033924 32 GATLEVIQKRRTEKPEVRDAAREAALREI 60 (108)
Q Consensus 32 GaSLe~I~~kRnqkpevR~A~Re~Airea 60 (108)
.+|||+|+.+=.--.|-|..+-.+.|...
T Consensus 42 ~~SleEIqkKLeAAEERRks~Ea~~lk~l 70 (143)
T 3ryc_E 42 DPSLEEIQKKLEAAEERRKYQEAELLKHL 70 (143)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 47999999875444555555554444433
Done!