Query 033924
Match_columns 108
No_of_seqs 111 out of 193
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 13:03:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033924.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033924hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q08a_ a.6.1.3 (A:) Transcrip 17.7 24 0.0017 21.3 1.4 11 31-41 15-25 (94)
2 d1r8ea1 a.6.1.3 (A:3-120) Tran 16.2 1.1E+02 0.0079 18.1 5.1 20 31-50 60-79 (118)
3 d1r8da_ a.6.1.3 (A:) Multidrug 8.0 72 0.0053 18.8 1.4 13 31-43 58-70 (109)
4 d1ibxa_ d.15.2.1 (A:) Caspase- 7.1 1.1E+02 0.0078 18.5 1.9 17 26-42 17-33 (81)
5 d1mlaa2 d.58.23.1 (A:128-197) 6.5 86 0.0062 17.7 1.1 13 29-41 7-19 (70)
6 d1q06a_ a.6.1.3 (A:) Transcrip 6.4 94 0.0069 18.7 1.4 11 31-41 56-66 (127)
7 d1c9fa_ d.15.2.1 (A:) Caspase- 6.0 1E+02 0.0076 18.8 1.4 17 26-42 20-36 (87)
8 d1m7ja3 c.1.9.11 (A:62-419) N- 5.7 1.3E+02 0.0098 21.3 2.1 21 27-47 250-270 (358)
9 d2vqca1 a.4.5.78 (A:4-73) F-11 5.6 1E+02 0.0073 18.2 1.0 12 32-43 20-31 (70)
10 d3efba1 c.124.1.8 (A:11-265) S 5.3 1.1E+02 0.0079 20.5 1.2 17 26-42 200-216 (255)
No 1
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=17.69 E-value=24 Score=21.26 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=9.7
Q ss_pred cccCHHHHHHH
Q 033924 31 VGATLEVIQKR 41 (108)
Q Consensus 31 vGaSLe~I~~k 41 (108)
+|.||++|..-
T Consensus 15 lGFsL~EI~~l 25 (94)
T d1q08a_ 15 LGFSLESIREL 25 (94)
T ss_dssp TTCCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 69999999975
No 2
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=16.21 E-value=1.1e+02 Score=18.12 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=14.7
Q ss_pred cccCHHHHHHHhhcCHHHHH
Q 033924 31 VGATLEVIQKRRTEKPEVRD 50 (108)
Q Consensus 31 vGaSLe~I~~kRnqkpevR~ 50 (108)
.|.||++|..--+...+...
T Consensus 60 ~g~sl~eIk~~l~~~~~~~~ 79 (118)
T d1r8ea1 60 IGTPLEEMKKAQDLEMEELF 79 (118)
T ss_dssp TTCCHHHHHHHTTSCHHHHH
T ss_pred cCCCHHHHHHHHccCHHHHH
Confidence 59999999987666555433
No 3
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=7.98 E-value=72 Score=18.79 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=10.6
Q ss_pred cccCHHHHHHHhh
Q 033924 31 VGATLEVIQKRRT 43 (108)
Q Consensus 31 vGaSLe~I~~kRn 43 (108)
.|.||++|+.-=+
T Consensus 58 ~G~sl~eI~~~l~ 70 (109)
T d1r8da_ 58 IGFRLDEIKEMLD 70 (109)
T ss_dssp TTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHh
Confidence 6999999987643
No 4
>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.10 E-value=1.1e+02 Score=18.53 Aligned_cols=17 Identities=6% Similarity=0.206 Sum_probs=14.3
Q ss_pred cccCccccCHHHHHHHh
Q 033924 26 YSRSIVGATLEVIQKRR 42 (108)
Q Consensus 26 ~qRaIvGaSLe~I~~kR 42 (108)
...+|+.-||+|+..|=
T Consensus 17 ~k~Gv~A~sL~eL~~K~ 33 (81)
T d1ibxa_ 17 RKFGVAGRSCQEVLRKG 33 (81)
T ss_dssp CCBBCCCSSHHHHHHHH
T ss_pred ceEeEEcCCHHHHHHHH
Confidence 36799999999998873
No 5
>d1mlaa2 d.58.23.1 (A:128-197) Probable ACP-binding domain of malonyl-CoA ACP transacylase {Escherichia coli [TaxId: 562]}
Probab=6.54 E-value=86 Score=17.70 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=9.3
Q ss_pred CccccCHHHHHHH
Q 033924 29 SIVGATLEVIQKR 41 (108)
Q Consensus 29 aIvGaSLe~I~~k 41 (108)
+|+|++.++|.+-
T Consensus 7 AVlg~~~~~v~~i 19 (70)
T d1mlaa2 7 AIIGLDDASIAKA 19 (70)
T ss_dssp EEESCCHHHHHHH
T ss_pred EEeCCCHHHHHHH
Confidence 6778888777654
No 6
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]}
Probab=6.44 E-value=94 Score=18.74 Aligned_cols=11 Identities=36% Similarity=0.308 Sum_probs=9.2
Q ss_pred cccCHHHHHHH
Q 033924 31 VGATLEVIQKR 41 (108)
Q Consensus 31 vGaSLe~I~~k 41 (108)
.|.||++|..-
T Consensus 56 ~G~sl~eI~~~ 66 (127)
T d1q06a_ 56 VGFNLEESGEL 66 (127)
T ss_dssp TTCCHHHHHHH
T ss_pred cCCCHHHHHHH
Confidence 69999999764
No 7
>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.01 E-value=1e+02 Score=18.84 Aligned_cols=17 Identities=0% Similarity=0.106 Sum_probs=14.2
Q ss_pred cccCccccCHHHHHHHh
Q 033924 26 YSRSIVGATLEVIQKRR 42 (108)
Q Consensus 26 ~qRaIvGaSLe~I~~kR 42 (108)
...+|+.-||+|+..|=
T Consensus 20 ~k~Gv~A~sL~eL~~K~ 36 (87)
T d1c9fa_ 20 CKFGVAARSCQELLRKG 36 (87)
T ss_dssp CCCEEEESSHHHHHHHH
T ss_pred ceEeEEcCCHHHHHHHH
Confidence 36799999999998873
No 8
>d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase, catalytic domain {Alcaligenes faecalis [TaxId: 511]}
Probab=5.73 E-value=1.3e+02 Score=21.32 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=18.8
Q ss_pred ccCccccCHHHHHHHhhcCHH
Q 033924 27 SRSIVGATLEVIQKRRTEKPE 47 (108)
Q Consensus 27 qRaIvGaSLe~I~~kRnqkpe 47 (108)
...++|.||.+|...|++.|.
T Consensus 250 ~~~~~G~~l~eiA~~~g~~p~ 270 (358)
T d1m7ja3 250 YPELSGRDLEEIAAERGKSKY 270 (358)
T ss_dssp CGGGTTCBHHHHHHHTTSCHH
T ss_pred ChhhccCcHHHHHHHcCCCHH
Confidence 567999999999999999885
No 9
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=5.59 E-value=1e+02 Score=18.23 Aligned_cols=12 Identities=33% Similarity=0.152 Sum_probs=9.0
Q ss_pred ccCHHHHHHHhh
Q 033924 32 GATLEVIQKRRT 43 (108)
Q Consensus 32 GaSLe~I~~kRn 43 (108)
-+|||||.+.=.
T Consensus 20 e~~ledilaqfe 31 (70)
T d2vqca1 20 ELTLEDILAQFE 31 (70)
T ss_dssp EECHHHHHHHHC
T ss_pred cccHHHHHHHhe
Confidence 369999997643
No 10
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella flexneri [TaxId: 623]}
Probab=5.27 E-value=1.1e+02 Score=20.52 Aligned_cols=17 Identities=12% Similarity=0.298 Sum_probs=14.1
Q ss_pred cccCccccCHHHHHHHh
Q 033924 26 YSRSIVGATLEVIQKRR 42 (108)
Q Consensus 26 ~qRaIvGaSLe~I~~kR 42 (108)
+..-++|+||++|+.-+
T Consensus 200 ~~~r~i~i~l~~l~~~~ 216 (255)
T d3efba1 200 MSEKTLSIEMNKLKQAR 216 (255)
T ss_dssp TGGGBCBCCHHHHHTSS
T ss_pred CCceeeecCHHHHccCC
Confidence 45778999999999865
Done!