Query 033925
Match_columns 108
No_of_seqs 20 out of 22
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 07:51:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12940 RAG1: Recombination-a 81.2 2.2 4.8E-05 37.6 4.0 61 6-70 12-78 (442)
2 KOG4797 Transcriptional regula 80.1 1.6 3.5E-05 32.9 2.5 60 7-66 10-72 (123)
3 PRK13991 cell division topolog 63.8 12 0.00026 26.0 3.6 38 38-75 26-66 (87)
4 PF08828 DSX_dimer: Doublesex 62.7 1.9 4.1E-05 29.3 -0.5 47 28-81 14-60 (62)
5 COG0216 PrfA Protein chain rel 57.7 13 0.00029 32.1 3.5 44 18-61 236-287 (363)
6 PRK13987 cell division topolog 56.7 16 0.00034 25.6 3.2 38 38-76 24-64 (91)
7 PRK00745 4-oxalocrotonate taut 55.8 15 0.00032 21.9 2.6 33 43-75 12-55 (62)
8 PF13434 K_oxygenase: L-lysine 48.1 21 0.00045 28.7 3.1 19 75-93 213-231 (341)
9 PF01361 Tautomerase: Tautomer 45.9 21 0.00047 21.2 2.2 36 40-75 12-54 (60)
10 TIGR00013 taut 4-oxalocrotonat 44.9 9.7 0.00021 22.6 0.6 36 40-75 13-55 (63)
11 TIGR01215 minE cell division t 43.0 32 0.00069 23.2 2.9 37 37-74 24-63 (81)
12 COG1159 Era GTPase [General fu 40.0 20 0.00043 30.0 1.8 54 29-82 174-231 (298)
13 COG3586 Uncharacterized conser 39.8 20 0.00043 26.3 1.6 16 54-69 2-17 (101)
14 PRK13989 cell division topolog 39.5 33 0.00071 23.5 2.6 38 38-76 25-67 (84)
15 TIGR00436 era GTP-binding prot 38.3 27 0.00059 26.3 2.2 36 29-64 166-201 (270)
16 cd08874 START_STARD9-like C-te 37.4 22 0.00048 27.1 1.6 34 53-86 2-39 (205)
17 cd01278 aprataxin_related apra 37.0 86 0.0019 20.1 4.2 19 66-84 78-104 (104)
18 PF09059 TyeA: TyeA; InterPro 35.6 67 0.0015 22.4 3.7 31 32-62 54-84 (87)
19 PRK00089 era GTPase Era; Revie 34.5 27 0.00058 26.3 1.6 35 30-64 174-208 (292)
20 PRK15494 era GTPase Era; Provi 33.4 31 0.00068 27.5 1.9 45 28-72 217-264 (339)
21 PF08776 VASP_tetra: VASP tetr 33.4 53 0.0012 20.6 2.6 15 49-63 6-20 (40)
22 PRK00296 minE cell division to 31.7 68 0.0015 22.0 3.1 34 38-72 25-62 (86)
23 PRK02220 4-oxalocrotonate taut 31.3 73 0.0016 18.7 2.9 33 43-75 12-55 (61)
24 PRK13990 cell division topolog 30.8 42 0.00092 23.6 2.1 33 37-70 24-66 (90)
25 smart00076 IFabd Interferon al 30.7 67 0.0014 22.9 3.1 24 30-53 1-25 (117)
26 cd00491 4Oxalocrotonate_Tautom 30.2 31 0.00067 19.9 1.1 35 41-75 13-54 (58)
27 PRK14103 trans-aconitate 2-met 29.3 1.3E+02 0.0027 22.3 4.5 38 48-87 217-254 (255)
28 PF08279 HTH_11: HTH domain; 29.0 32 0.00069 19.9 1.0 24 57-89 30-54 (55)
29 PRK10687 purine nucleoside pho 28.5 1.6E+02 0.0035 20.4 4.7 28 64-91 76-115 (119)
30 cd01276 PKCI_related Protein K 27.5 1.1E+02 0.0025 19.4 3.5 10 76-85 95-104 (104)
31 PF14772 NYD-SP28: Sperm tail 26.6 94 0.002 20.8 3.1 19 40-58 70-88 (104)
32 PRK13988 cell division topolog 26.2 90 0.002 22.1 3.1 35 38-73 28-65 (97)
33 PF05596 Taeniidae_ag: Taeniid 26.2 92 0.002 20.7 2.9 36 33-68 23-63 (64)
34 PHA01817 hypothetical protein 25.5 1.2E+02 0.0026 27.0 4.3 31 41-71 216-246 (479)
35 cd08902 START_STARD4-like Lipi 25.3 1.1E+02 0.0023 24.4 3.6 46 51-97 6-55 (202)
36 TIGR00989 3a0801s07tom40 mitoc 25.2 57 0.0012 25.1 2.1 26 56-81 7-33 (161)
37 PF13680 DUF4152: Protein of u 24.8 1.2E+02 0.0026 24.9 3.9 40 32-89 47-86 (227)
38 PF03748 FliL: Flagellar basal 24.3 98 0.0021 19.6 2.7 20 44-63 64-83 (99)
39 PF11387 DUF2795: Protein of u 24.2 1.7E+02 0.0037 17.5 3.8 25 29-60 2-31 (44)
40 PF08043 Xin: Xin repeat; Int 23.6 27 0.00059 18.2 0.1 7 70-76 7-13 (16)
41 PF00472 RF-1: RF-1 domain; I 22.5 1.3E+02 0.0029 20.8 3.3 45 27-71 35-86 (113)
42 KOG1268 Glucosamine 6-phosphat 22.3 85 0.0018 29.3 2.9 34 34-67 482-520 (670)
43 cd08871 START_STARD10-like Lip 21.9 1.2E+02 0.0026 22.2 3.2 32 45-86 9-40 (222)
44 PF08172 CASP_C: CASP C termin 21.2 89 0.0019 24.9 2.5 19 54-72 107-125 (248)
45 PF06504 RepC: Replication pro 21.0 1.6E+02 0.0036 24.6 4.1 40 45-88 241-280 (281)
46 PF06999 Suc_Fer-like: Sucrase 20.8 88 0.0019 23.1 2.3 47 37-90 136-182 (230)
47 PF14819 QueF_N: Nitrile reduc 20.2 35 0.00076 25.1 0.0 39 26-64 52-107 (110)
48 COG0537 Hit Diadenosine tetrap 20.2 1.2E+02 0.0025 21.6 2.7 17 72-88 88-107 (138)
No 1
>PF12940 RAG1: Recombination-activation protein 1 (RAG1); InterPro: IPR024627 This entry represents recombination activating protein 1 (RAG1), which is the catalytic component of the RAG complex. The RAG complex is a multi-protein complex that mediates DNA cleavage during V(D)J (variable-diversity-joining) recombination []. RAG1 mediates DNA-binding to the conserved recombination signal sequences (RSS) []. Many of the proteins recognised by this entry are fragments.; GO: 0043565 sequence-specific DNA binding, 0033151 V(D)J recombination
Probab=81.25 E-value=2.2 Score=37.60 Aligned_cols=61 Identities=34% Similarity=0.420 Sum_probs=43.6
Q ss_pred CCCcceeccceecC--CCcccccccccCCCCCCcchhhhhhHHHHH----HHHHHHHHHHHHHhcccccCC
Q 033925 6 PANSSISTTPLVGG--GSSSNNTATDEFHFPSDLISIQDRKDEALQ----VLRSDLMATLNKEVKSLDEDN 70 (108)
Q Consensus 6 PA~S~VSttav~gG--G~s~~~~~~ddfhfp~D~is~~~RKDeam~----~Lk~dlma~L~keVksLdeDn 70 (108)
||--.|||..-||= |-|.-+.++||+ |+|-|.-.+|-|.|+. .|.+|||+-|++. .|||..
T Consensus 12 p~lknvs~s~~vgIi~glsgw~ssvdd~--p~dtItrrFrYdvALvsaLkDlEEdImEGLre~--gleds~ 78 (442)
T PF12940_consen 12 PALKNVSTSCDVGIINGLSGWASSVDDS--PADTITRRFRYDVALVSALKDLEEDIMEGLRES--GLEDSA 78 (442)
T ss_pred CcccccCCcCcccceeccCCCcccccCC--cchhhhhhccchHHHHHHHHHHHHHHHHhHhhc--Cccccc
Confidence 56667777765552 333334488998 6799999999999876 5667999998863 566543
No 2
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=80.09 E-value=1.6 Score=32.85 Aligned_cols=60 Identities=27% Similarity=0.395 Sum_probs=33.0
Q ss_pred CCcceeccceecCC-Cccccccc-ccCCCCCCc-chhhhhhHHHHHHHHHHHHHHHHHHhccc
Q 033925 7 ANSSISTTPLVGGG-SSSNNTAT-DEFHFPSDL-ISIQDRKDEALQVLRSDLMATLNKEVKSL 66 (108)
Q Consensus 7 A~S~VSttav~gGG-~s~~~~~~-ddfhfp~D~-is~~~RKDeam~~Lk~dlma~L~keVksL 66 (108)
.|++.|-...+||. .+++..++ --+|-++-. ..|-..-+.||+.+|+-||=+.|.||.-|
T Consensus 10 ~t~Sps~~~~~~gdp~~~~~s~~~~a~ha~~~~VvaIDNKIeQAMDLVKtHLmfAVREEVe~L 72 (123)
T KOG4797|consen 10 PTSSPSYGISLGGDPTSNASSALSVAAHASSGSVVAIDNKIEQAMDLVKTHLMFAVREEVEVL 72 (123)
T ss_pred cccCCcccccccCCcccCchhHHHHhccCCCCceEeechHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554 12211111 123333333 23334457899999999998888887544
No 3
>PRK13991 cell division topological specificity factor MinE; Provisional
Probab=63.81 E-value=12 Score=25.99 Aligned_cols=38 Identities=18% Similarity=0.370 Sum_probs=30.7
Q ss_pred chhhhhh---HHHHHHHHHHHHHHHHHHhcccccCCccccc
Q 033925 38 ISIQDRK---DEALQVLRSDLMATLNKEVKSLDEDNWMFEG 75 (108)
Q Consensus 38 is~~~RK---Deam~~Lk~dlma~L~keVksLdeDnWmFe~ 75 (108)
+=++||. -+.|..||.|+++.+.|=|..+|+|+-..+=
T Consensus 26 iLahdR~~~~p~~l~~lk~eil~VIsKYv~~Id~~~i~V~l 66 (87)
T PRK13991 26 VLVHDRVKLTPEMMEQMKADLAEVIKRYVPAIDAEAIEVTL 66 (87)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHhcccCccceEEEE
Confidence 4455665 6789999999999999999989998876543
No 4
>PF08828 DSX_dimer: Doublesex dimerisation domain; InterPro: IPR014932 Doublesex (DSX) is a transcription factor that regulates somatic sexual differences in Drosophila. The structure has revealed a novel dimeric arrangement of ubiquitin-associated folds that has not previously been identified in a transcription factor []. ; PDB: 1ZV1_B 2JZ0_A 2JZ1_B.
Probab=62.72 E-value=1.9 Score=29.26 Aligned_cols=47 Identities=13% Similarity=0.309 Sum_probs=22.9
Q ss_pred cccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHhcccccCCcccccccceeE
Q 033925 28 TDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIH 81 (108)
Q Consensus 28 ~ddfhfp~D~is~~~RKDeam~~Lk~dlma~L~keVksLdeDnWmFe~prSrI~ 81 (108)
++.|+|||.++.- |-|+..+..+.+++-.+-.||+.+.+..-+..++
T Consensus 14 lEkf~YpWEmmpL-------myVILK~A~~D~eeA~rrI~E~~~~v~~~~~~~~ 60 (62)
T PF08828_consen 14 LEKFRYPWEMMPL-------MYVILKYADADVEEASRRIDEAKNVVNEYSRQHN 60 (62)
T ss_dssp HHHTT--GGGHHH-------HHHHHHHTTT-HHHHHHHHHH-------------
T ss_pred HHHhCCCHHHHHH-------HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5779999999764 5677776666777777777887777665544444
No 5
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=57.70 E-value=13 Score=32.12 Aligned_cols=44 Identities=30% Similarity=0.532 Sum_probs=31.6
Q ss_pred cCCCcc-cccccccCCCCCCc-chhhhh------hHHHHHHHHHHHHHHHHH
Q 033925 18 GGGSSS-NNTATDEFHFPSDL-ISIQDR------KDEALQVLRSDLMATLNK 61 (108)
Q Consensus 18 gGG~s~-~~~~~ddfhfp~D~-is~~~R------KDeam~~Lk~dlma~L~k 61 (108)
||+..+ +..+++=.|.|.-+ .+||+. |+.||.+|++-|-+.-+.
T Consensus 236 GGQhVNtTdSAVRiTHlPTGIvV~cQderSQ~kNk~kAmkvL~ARl~~~~~~ 287 (363)
T COG0216 236 GGQHVNTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQ 287 (363)
T ss_pred CCCCcCccchhheeeecCCceEEEecchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 666553 34567788999887 677743 789999999987665443
No 6
>PRK13987 cell division topological specificity factor MinE; Provisional
Probab=56.67 E-value=16 Score=25.60 Aligned_cols=38 Identities=24% Similarity=0.490 Sum_probs=29.6
Q ss_pred chhhhhh---HHHHHHHHHHHHHHHHHHhcccccCCcccccc
Q 033925 38 ISIQDRK---DEALQVLRSDLMATLNKEVKSLDEDNWMFEGP 76 (108)
Q Consensus 38 is~~~RK---Deam~~Lk~dlma~L~keVksLdeDnWmFe~p 76 (108)
|=++||. .+.|..||.||++.+.|=|. +|+++-.++=.
T Consensus 24 iLa~dR~~~sp~~l~~lk~eIl~VI~kYv~-Id~~~v~i~l~ 64 (91)
T PRK13987 24 ILIHDRGDISPDVLEMIKEDILKVISKYVE-IDNEDVDIKMT 64 (91)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhee-eCccceEEEEE
Confidence 4456665 68899999999999999887 78877665533
No 7
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=55.77 E-value=15 Score=21.87 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH-----------hcccccCCccccc
Q 033925 43 RKDEALQVLRSDLMATLNKE-----------VKSLDEDNWMFEG 75 (108)
Q Consensus 43 RKDeam~~Lk~dlma~L~ke-----------VksLdeDnWmFe~ 75 (108)
|-+|..+.|-.+|-++|.+. +...+.++|.|.|
T Consensus 12 rs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~~~~w~~gG 55 (62)
T PRK00745 12 RTVEQKRKLVEEITRVTVETLGCPPESVDIIITDVKRENWATGG 55 (62)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCChhHEEEEEEEcChHHeeECC
Confidence 55566666666666666554 3456888998876
No 8
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=48.11 E-value=21 Score=28.67 Aligned_cols=19 Identities=32% Similarity=0.669 Sum_probs=13.0
Q ss_pred cccceeEEeecCCCCCccc
Q 033925 75 GPRSHIHLISTAGGFLNKQ 93 (108)
Q Consensus 75 ~prSrI~LiSr~g~~l~kq 93 (108)
+|..+|++|+|..++.|..
T Consensus 213 ~~~~~V~~i~R~~~~~~~d 231 (341)
T PF13434_consen 213 GPEAKVTWISRSPGFFPMD 231 (341)
T ss_dssp -TTEEEEEEESSSS-EB--
T ss_pred CCCcEEEEEECCCccCCCc
Confidence 4558999999999887743
No 9
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=45.87 E-value=21 Score=21.16 Aligned_cols=36 Identities=17% Similarity=0.431 Sum_probs=22.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH-------hcccccCCccccc
Q 033925 40 IQDRKDEALQVLRSDLMATLNKE-------VKSLDEDNWMFEG 75 (108)
Q Consensus 40 ~~~RKDeam~~Lk~dlma~L~ke-------VksLdeDnWmFe~ 75 (108)
..+.|.+-+..|-..+.+.|.+. +...+.+||...|
T Consensus 12 ~~e~K~~l~~~it~~~~~~lg~~~~~i~V~i~E~~~~~w~~gG 54 (60)
T PF01361_consen 12 TAEQKRELAEAITDAVVEVLGIPPERISVVIEEVPPENWGIGG 54 (60)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTS-GGGEEEEEEEE-CCCEEETT
T ss_pred CHHHHHHHHHHHHHHHHHHhCcCCCeEEEEEEEEChhheEECC
Confidence 45667777777777777777654 3346778887765
No 10
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=44.95 E-value=9.7 Score=22.64 Aligned_cols=36 Identities=14% Similarity=0.344 Sum_probs=22.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH-------HhcccccCCccccc
Q 033925 40 IQDRKDEALQVLRSDLMATLNK-------EVKSLDEDNWMFEG 75 (108)
Q Consensus 40 ~~~RKDeam~~Lk~dlma~L~k-------eVksLdeDnWmFe~ 75 (108)
..+.|.+.+..|-..+.+.|.. -|...+.++|.|.|
T Consensus 13 t~eqK~~l~~~it~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG 55 (63)
T TIGR00013 13 TDEQKRQLIEGVTEAMAETLGANLESIVVIIDEMPKNNYGIGG 55 (63)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECC
Confidence 3456666666666666666633 24556778888865
No 11
>TIGR01215 minE cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites.
Probab=43.04 E-value=32 Score=23.24 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=28.5
Q ss_pred cchhhhhh---HHHHHHHHHHHHHHHHHHhcccccCCcccc
Q 033925 37 LISIQDRK---DEALQVLRSDLMATLNKEVKSLDEDNWMFE 74 (108)
Q Consensus 37 ~is~~~RK---Deam~~Lk~dlma~L~keVksLdeDnWmFe 74 (108)
+|=+++|. .+.|..||.||++.+.|-|. +|+++-.++
T Consensus 24 ~iL~~dR~~~~p~~l~~mk~dil~VIskY~~-id~~~v~v~ 63 (81)
T TIGR01215 24 LILAHDRAQLAPEYLEELRKEILEVISKYVE-IDPEMVEVS 63 (81)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhee-cchHhEEEE
Confidence 35556676 68999999999999999887 666665543
No 12
>COG1159 Era GTPase [General function prediction only]
Probab=40.02 E-value=20 Score=30.04 Aligned_cols=54 Identities=19% Similarity=0.317 Sum_probs=42.9
Q ss_pred ccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHhc---ccccCCcccc-cccceeEE
Q 033925 29 DEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVK---SLDEDNWMFE-GPRSHIHL 82 (108)
Q Consensus 29 ddfhfp~D~is~~~RKDeam~~Lk~dlma~L~keVk---sLdeDnWmFe-~prSrI~L 82 (108)
..++||.|.|+.+..+--|...+|+.+|.-|+.|+= ..+=|.|.+. ..-=+||.
T Consensus 174 g~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a 231 (298)
T COG1159 174 GPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHA 231 (298)
T ss_pred CCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEE
Confidence 457899999999999999999999999999999973 4555677774 44445554
No 13
>COG3586 Uncharacterized conserved protein [Function unknown]
Probab=39.84 E-value=20 Score=26.35 Aligned_cols=16 Identities=44% Similarity=0.729 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcccccC
Q 033925 54 DLMATLNKEVKSLDED 69 (108)
Q Consensus 54 dlma~L~keVksLdeD 69 (108)
+|-++|++|+.+||+|
T Consensus 2 eLfe~~r~~ilaLd~~ 17 (101)
T COG3586 2 ELFEALRKEILALDPD 17 (101)
T ss_pred hHHHHHHHHHHhcCCc
Confidence 6788999999999998
No 14
>PRK13989 cell division topological specificity factor MinE; Provisional
Probab=39.50 E-value=33 Score=23.49 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=29.1
Q ss_pred chhhhhhH-----HHHHHHHHHHHHHHHHHhcccccCCcccccc
Q 033925 38 ISIQDRKD-----EALQVLRSDLMATLNKEVKSLDEDNWMFEGP 76 (108)
Q Consensus 38 is~~~RKD-----eam~~Lk~dlma~L~keVksLdeDnWmFe~p 76 (108)
|=+++|.+ +.|..||.|+++.+.|=|. +|.|+-.++-.
T Consensus 25 iLa~dR~~~~~~p~~l~~lk~dil~VIsKYv~-Id~~~v~i~l~ 67 (84)
T PRK13989 25 IIAHERVGGRQPPDYLPALQKELVAVISKYVK-ISPDDIRVSLE 67 (84)
T ss_pred HHHHHccCCCCCHHHHHHHHHHHHHHHHHhee-eCccceEEEEE
Confidence 45566644 6889999999999999887 67777665543
No 15
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=38.27 E-value=27 Score=26.34 Aligned_cols=36 Identities=17% Similarity=0.431 Sum_probs=31.6
Q ss_pred ccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHhc
Q 033925 29 DEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVK 64 (108)
Q Consensus 29 ddfhfp~D~is~~~RKDeam~~Lk~dlma~L~keVk 64 (108)
....||.|.+..+..+..+-..+|+.++..|++||-
T Consensus 166 ~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p 201 (270)
T TIGR00436 166 GPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIP 201 (270)
T ss_pred CCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccC
Confidence 346799999998888888999999999999999974
No 16
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=37.39 E-value=22 Score=27.10 Aligned_cols=34 Identities=15% Similarity=0.299 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhccc----ccCCcccccccceeEEeecC
Q 033925 53 SDLMATLNKEVKSL----DEDNWMFEGPRSHIHLISTA 86 (108)
Q Consensus 53 ~dlma~L~keVksL----deDnWmFe~prSrI~LiSr~ 86 (108)
+++||+..--|.+| ++++|.|...+..|-+-+++
T Consensus 2 ~~~~~~~~~n~~~l~~~~~~~gW~l~~~~~gI~Vy~k~ 39 (205)
T cd08874 2 SIVMAACSVNLSNLDQCQATAGWSYQCLEKDVVIYYKV 39 (205)
T ss_pred chhhhhhhhhHHHHHhhhccCCcEEEecCCCEEEEEec
Confidence 46788887777776 68999999999999999997
No 17
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=36.96 E-value=86 Score=20.13 Aligned_cols=19 Identities=32% Similarity=0.691 Sum_probs=12.6
Q ss_pred cccCCccc---ccc-----cceeEEee
Q 033925 66 LDEDNWMF---EGP-----RSHIHLIS 84 (108)
Q Consensus 66 LdeDnWmF---e~p-----rSrI~LiS 84 (108)
+.++.+.| .+| +-|+|+||
T Consensus 78 ~~~~~~n~g~h~~p~~~v~H~H~Hvi~ 104 (104)
T cd01278 78 TDPSEFRFGFHAPPFTSVSHLHLHVIA 104 (104)
T ss_pred CCccCeEEEeCCCCCcCeeeEEEEeeC
Confidence 56777766 234 77888876
No 18
>PF09059 TyeA: TyeA; InterPro: IPR015144 This domain is composed of two pairs of parallel alpha-helices, and interacts with the bacterial protein YopN via hydrophobic residues located on the helices. Association of TyeA with the C terminus of YopN is accompanied by conformational changes in both polypeptides that create order out of disorder: the resulting structure then serves as an impediment to type III secretion of YopN []. ; PDB: 1XL3_D.
Probab=35.60 E-value=67 Score=22.36 Aligned_cols=31 Identities=16% Similarity=0.442 Sum_probs=25.8
Q ss_pred CCCCCcchhhhhhHHHHHHHHHHHHHHHHHH
Q 033925 32 HFPSDLISIQDRKDEALQVLRSDLMATLNKE 62 (108)
Q Consensus 32 hfp~D~is~~~RKDeam~~Lk~dlma~L~ke 62 (108)
.||.+.++-.+-+...+++...+|=+++++|
T Consensus 54 ~~Pv~vF~D~EqR~~vL~a~Q~alD~aI~~E 84 (87)
T PF09059_consen 54 LMPVDVFNDEEQRQNVLDAVQEALDQAIERE 84 (87)
T ss_dssp TS-GGGSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCcHHhcCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 4699999999999999999999998888887
No 19
>PRK00089 era GTPase Era; Reviewed
Probab=34.48 E-value=27 Score=26.27 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=30.7
Q ss_pred cCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHhc
Q 033925 30 EFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVK 64 (108)
Q Consensus 30 dfhfp~D~is~~~RKDeam~~Lk~dlma~L~keVk 64 (108)
...||.|.+..+..+.-+-..+++.++..|++||-
T Consensus 174 ~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p 208 (292)
T PRK00089 174 PPYYPEDQITDRPERFLAAEIIREKLLRLLGDELP 208 (292)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCC
Confidence 35689999999988888888999999999999974
No 20
>PRK15494 era GTPase Era; Provisional
Probab=33.41 E-value=31 Score=27.52 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=36.2
Q ss_pred cccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHhc---ccccCCcc
Q 033925 28 TDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVK---SLDEDNWM 72 (108)
Q Consensus 28 ~ddfhfp~D~is~~~RKDeam~~Lk~dlma~L~keVk---sLdeDnWm 72 (108)
-....||.|.+.-+-.+.-|-..+|+.++..|++||= ...=++|.
T Consensus 217 ~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~ 264 (339)
T PRK15494 217 ISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWE 264 (339)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEE
Confidence 4567789999999999999999999999999999973 23334554
No 21
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=33.37 E-value=53 Score=20.59 Aligned_cols=15 Identities=20% Similarity=0.567 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHh
Q 033925 49 QVLRSDLMATLNKEV 63 (108)
Q Consensus 49 ~~Lk~dlma~L~keV 63 (108)
..+|.++++..+||+
T Consensus 6 e~~KqEIL~EvrkEl 20 (40)
T PF08776_consen 6 ERLKQEILEEVRKEL 20 (40)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 22
>PRK00296 minE cell division topological specificity factor MinE; Reviewed
Probab=31.66 E-value=68 Score=21.98 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=25.2
Q ss_pred chhhhhh----HHHHHHHHHHHHHHHHHHhcccccCCcc
Q 033925 38 ISIQDRK----DEALQVLRSDLMATLNKEVKSLDEDNWM 72 (108)
Q Consensus 38 is~~~RK----Deam~~Lk~dlma~L~keVksLdeDnWm 72 (108)
|=+++|. .+.|..||.||++.+.|-|. +|.++-.
T Consensus 25 iL~~dR~~~~~p~~l~~lk~dIl~VIsKY~~-Id~~~v~ 62 (86)
T PRK00296 25 IVAHERSSRGEPDYLPQLRKEILEVIAKYVQ-IDPDKVS 62 (86)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhee-cChhhEE
Confidence 3355665 36799999999999999887 5665543
No 23
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=31.28 E-value=73 Score=18.73 Aligned_cols=33 Identities=24% Similarity=0.531 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHh-----------cccccCCccccc
Q 033925 43 RKDEALQVLRSDLMATLNKEV-----------KSLDEDNWMFEG 75 (108)
Q Consensus 43 RKDeam~~Lk~dlma~L~keV-----------ksLdeDnWmFe~ 75 (108)
|=+|.-..|-.+|.++|.+.. ...+.++|.|.|
T Consensus 12 rs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~~~~~~~gG 55 (61)
T PRK02220 12 RTEEQLKALVKDVTAAVSKNTGAPAEHIHVIINEMSKNHYAVGG 55 (61)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEeChhHeEECC
Confidence 445555555555555555443 335677777765
No 24
>PRK13990 cell division topological specificity factor MinE; Provisional
Probab=30.83 E-value=42 Score=23.64 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=25.3
Q ss_pred cchhhhhhH----------HHHHHHHHHHHHHHHHHhcccccCC
Q 033925 37 LISIQDRKD----------EALQVLRSDLMATLNKEVKSLDEDN 70 (108)
Q Consensus 37 ~is~~~RKD----------eam~~Lk~dlma~L~keVksLdeDn 70 (108)
+|=+++|.+ +-|..||.||++.+.|=|.= |+|+
T Consensus 24 iiLaheR~~~~~~~~~~~pd~L~~lk~eIl~VI~KYv~I-d~~~ 66 (90)
T PRK13990 24 IIVAHQRSELHPRSSKISSHLLAELKDEIIEVVKKYVAL-SEEN 66 (90)
T ss_pred eeeeeecccCCcccccCCHHHHHHHHHHHHHHHHHheec-Chhc
Confidence 456677754 78999999999999998753 5554
No 25
>smart00076 IFabd Interferon alpha, beta and delta. Interferons produce antiviral and antiproliferative responses in cells. They are classified into five groups, all of them related but gamma-interferon.
Probab=30.72 E-value=67 Score=22.93 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=17.1
Q ss_pred cCCCCCCcch-hhhhhHHHHHHHHH
Q 033925 30 EFHFPSDLIS-IQDRKDEALQVLRS 53 (108)
Q Consensus 30 dfhfp~D~is-~~~RKDeam~~Lk~ 53 (108)
||.||.++.+ .|..|.+|..++.+
T Consensus 1 dF~fP~e~~~~~q~qk~~a~~~~~e 25 (117)
T smart00076 1 DFAFPEEILDGSQFQKAQAASVIHE 25 (117)
T ss_pred CCCCCHHHhccchHHHHHHHHHHHH
Confidence 7899999863 46678777765443
No 26
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=30.18 E-value=31 Score=19.94 Aligned_cols=35 Identities=17% Similarity=0.466 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH-------hcccccCCccccc
Q 033925 41 QDRKDEALQVLRSDLMATLNKE-------VKSLDEDNWMFEG 75 (108)
Q Consensus 41 ~~RKDeam~~Lk~dlma~L~ke-------VksLdeDnWmFe~ 75 (108)
.+.|.+.+..|-..+.+.+... +...+.++|.|.|
T Consensus 13 ~eqk~~l~~~i~~~l~~~~g~~~~~v~V~i~e~~~~~~~~gg 54 (58)
T cd00491 13 DEQKRELIERVTEAVSEILGAPEATIVVIIDEMPKENWGIGG 54 (58)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCchhceECC
Confidence 5566666666666665555332 3445778887765
No 27
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=29.28 E-value=1.3e+02 Score=22.34 Aligned_cols=38 Identities=13% Similarity=0.333 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhcccccCCcccccccceeEEeecCC
Q 033925 48 LQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAG 87 (108)
Q Consensus 48 m~~Lk~dlma~L~keVksLdeDnWmFe~prSrI~LiSr~g 87 (108)
...+++++++.|++.--.=+|++|-|. --||.+|.+..
T Consensus 217 ~~~~~~~~~~~l~~~~~~~~~g~~~~~--~~~~~~~a~~~ 254 (255)
T PRK14103 217 WEQFRAELIPLLREAYPPRADGTTFFP--FRRVFVVARVG 254 (255)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCcEEee--eccEEEEEEeC
Confidence 345555555555544222256678776 44566665543
No 28
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=29.02 E-value=32 Score=19.90 Aligned_cols=24 Identities=33% Similarity=0.590 Sum_probs=16.1
Q ss_pred HHHHHHhcccccCCcccccccceeEEeecCC-CC
Q 033925 57 ATLNKEVKSLDEDNWMFEGPRSHIHLISTAG-GF 89 (108)
Q Consensus 57 a~L~keVksLdeDnWmFe~prSrI~LiSr~g-~~ 89 (108)
..+++.++.|.+.. +.+.|.+| ||
T Consensus 30 rTi~~~i~~L~~~~---------~~I~~~~~~GY 54 (55)
T PF08279_consen 30 RTIRRDIKELREWG---------IPIESKRGKGY 54 (55)
T ss_dssp HHHHHHHHHHHHTT----------EEEEETTTEE
T ss_pred HHHHHHHHHHHHCC---------CeEEeeCCCCc
Confidence 45677777776654 77888887 65
No 29
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=28.46 E-value=1.6e+02 Score=20.43 Aligned_cols=28 Identities=29% Similarity=0.561 Sum_probs=19.0
Q ss_pred cccccCCcccc-------c---ccceeEEeecC--CCCCc
Q 033925 64 KSLDEDNWMFE-------G---PRSHIHLISTA--GGFLN 91 (108)
Q Consensus 64 ksLdeDnWmFe-------~---prSrI~LiSr~--g~~l~ 91 (108)
+.+..|.+.+- | ++-|||+|.|+ |+-|.
T Consensus 76 ~~~~~~g~~l~~n~G~~agQ~V~HlHiHvI~g~~~~~~~~ 115 (119)
T PRK10687 76 EGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPLGPMLA 115 (119)
T ss_pred hCCCCCceEEEEeCCCcCCcccCEEEEEECCCcccCcchh
Confidence 34567776662 2 68899999987 55543
No 30
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=27.52 E-value=1.1e+02 Score=19.42 Aligned_cols=10 Identities=30% Similarity=0.521 Sum_probs=7.3
Q ss_pred ccceeEEeec
Q 033925 76 PRSHIHLIST 85 (108)
Q Consensus 76 prSrI~LiSr 85 (108)
++-+||+|++
T Consensus 95 ~H~HiHii~~ 104 (104)
T cd01276 95 FHLHLHLLGG 104 (104)
T ss_pred eEEEEEEeCC
Confidence 4678888875
No 31
>PF14772 NYD-SP28: Sperm tail
Probab=26.55 E-value=94 Score=20.82 Aligned_cols=19 Identities=37% Similarity=0.566 Sum_probs=14.0
Q ss_pred hhhhhHHHHHHHHHHHHHH
Q 033925 40 IQDRKDEALQVLRSDLMAT 58 (108)
Q Consensus 40 ~~~RKDeam~~Lk~dlma~ 58 (108)
+.+|||..+..|..+|..+
T Consensus 70 ii~~Kd~lI~~L~~eL~~~ 88 (104)
T PF14772_consen 70 IIDRKDALIKELQQELKEA 88 (104)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4578888888888777654
No 32
>PRK13988 cell division topological specificity factor MinE; Provisional
Probab=26.22 E-value=90 Score=22.12 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=26.1
Q ss_pred chhhhhh---HHHHHHHHHHHHHHHHHHhcccccCCccc
Q 033925 38 ISIQDRK---DEALQVLRSDLMATLNKEVKSLDEDNWMF 73 (108)
Q Consensus 38 is~~~RK---Deam~~Lk~dlma~L~keVksLdeDnWmF 73 (108)
|=++||. .+.|..||.|+++.+.|=|. +|+|+-.+
T Consensus 28 iL~~dR~~~sp~~l~~mk~dIl~VIskYv~-Id~~~v~V 65 (97)
T PRK13988 28 VLAHDRADLSPELLEQMRKEILEVVARYVE-IDPEEGEV 65 (97)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHHHee-eCccceEE
Confidence 4556665 78999999999999999765 46555433
No 33
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=26.20 E-value=92 Score=20.70 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=25.9
Q ss_pred CCCCcchh----h-hhhHHHHHHHHHHHHHHHHHHhccccc
Q 033925 33 FPSDLISI----Q-DRKDEALQVLRSDLMATLNKEVKSLDE 68 (108)
Q Consensus 33 fp~D~is~----~-~RKDeam~~Lk~dlma~L~keVksLde 68 (108)
|-.|+|-- + --=.++++.++..++++|.+-|+.|-+
T Consensus 23 F~~DPlGqkIa~l~kdw~~~~~~~r~KiR~~L~ey~k~L~~ 63 (64)
T PF05596_consen 23 FYEDPLGQKIAQLAKDWNEICQEVRKKIRAALAEYCKGLKN 63 (64)
T ss_pred hccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 55666432 1 222588999999999999999988753
No 34
>PHA01817 hypothetical protein
Probab=25.46 E-value=1.2e+02 Score=26.96 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=26.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcccccCCc
Q 033925 41 QDRKDEALQVLRSDLMATLNKEVKSLDEDNW 71 (108)
Q Consensus 41 ~~RKDeam~~Lk~dlma~L~keVksLdeDnW 71 (108)
+---..||++|...|.++|+=.|.|+-.|..
T Consensus 216 lalakqamqellkkvqdalqwdvhsigsdkf 246 (479)
T PHA01817 216 LALAKQAMQELLKKVQDALQWDVHSIGSDKF 246 (479)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhccccccc
Confidence 3445689999999999999999999988865
No 35
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=25.34 E-value=1.1e+02 Score=24.37 Aligned_cols=46 Identities=22% Similarity=0.364 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhcccccCCcccccccceeEEeecC----CCCCccccccc
Q 033925 51 LRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTA----GGFLNKQLETS 97 (108)
Q Consensus 51 Lk~dlma~L~keVksLdeDnWmFe~prSrI~LiSr~----g~~l~kq~e~s 97 (108)
+-.++-+.|.. -..||+..|+++....-.-.-++| ||.++|-.++-
T Consensus 6 ~~~~~~~~~~~-y~~~~~~~Wkl~k~~~~~~v~~k~~~ef~gkl~R~Egvv 55 (202)
T cd08902 6 KTTKLQNTLIQ-YHSILEEEWRVAKKSKDVTVWRKPSEEFGGYLYKAQGVV 55 (202)
T ss_pred HHHHHHHHHHH-hccccccCcEEEEeCCCEEEEEecCCcCCCceEEEEEEe
Confidence 33445555555 788999999999887665555553 89998876654
No 36
>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.
Probab=25.21 E-value=57 Score=25.10 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=22.4
Q ss_pred HHHHHHHh-cccccCCcccccccceeE
Q 033925 56 MATLNKEV-KSLDEDNWMFEGPRSHIH 81 (108)
Q Consensus 56 ma~L~keV-ksLdeDnWmFe~prSrI~ 81 (108)
.+.|.||| |..--.+++|||=|--|+
T Consensus 7 ~E~l~re~~rdv~l~~~~FeG~R~d~~ 33 (161)
T TIGR00989 7 IENLAKEVSRDTLLSNYMFTGLRADVT 33 (161)
T ss_pred HHHHHHHHhhhcccCccccccEEEEEe
Confidence 47799999 888889999999987765
No 37
>PF13680 DUF4152: Protein of unknown function (DUF4152)
Probab=24.79 E-value=1.2e+02 Score=24.90 Aligned_cols=40 Identities=45% Similarity=0.556 Sum_probs=32.0
Q ss_pred CCCCCcchhhhhhHHHHHHHHHHHHHHHHHHhcccccCCcccccccceeEEeecCCCC
Q 033925 32 HFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAGGF 89 (108)
Q Consensus 32 hfp~D~is~~~RKDeam~~Lk~dlma~L~keVksLdeDnWmFe~prSrI~LiSr~g~~ 89 (108)
+|-.|+---|-=|||++++++ |-||||- .-|||=|.-||-
T Consensus 47 PfnYDlsGRqAi~DE~~LAie------LAk~vkP------------DViHLDStlGGI 86 (227)
T PF13680_consen 47 PFNYDLSGRQAIRDEAFLAIE------LAKKVKP------------DVIHLDSTLGGI 86 (227)
T ss_pred CcCcCcchHHHHHHHHHHHHH------HHhhcCC------------CEEEeccccCcE
Confidence 466788888999999998875 6678763 469999998885
No 38
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=24.27 E-value=98 Score=19.62 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 033925 44 KDEALQVLRSDLMATLNKEV 63 (108)
Q Consensus 44 KDeam~~Lk~dlma~L~keV 63 (108)
..+.+..||.++++.+++.+
T Consensus 64 ~~~g~~~Lk~~l~~~in~~l 83 (99)
T PF03748_consen 64 GPEGKERLKDELKDRINKIL 83 (99)
T ss_pred ChhhHHHHHHHHHHHHHHhh
Confidence 33677788889999888876
No 39
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=24.17 E-value=1.7e+02 Score=17.52 Aligned_cols=25 Identities=32% Similarity=0.642 Sum_probs=14.3
Q ss_pred ccCCCCCCcchhhhhhHHHHHHHHH-----HHHHHHH
Q 033925 29 DEFHFPSDLISIQDRKDEALQVLRS-----DLMATLN 60 (108)
Q Consensus 29 ddfhfp~D~is~~~RKDeam~~Lk~-----dlma~L~ 60 (108)
.+..||++ |++-+...+. +|++.|+
T Consensus 2 ~~~dyPa~-------k~~Lv~~A~~~gA~~~vl~~L~ 31 (44)
T PF11387_consen 2 KGVDYPAD-------KDELVRHARRNGAPDDVLDALE 31 (44)
T ss_pred CCCCCCCC-------HHHHHHHHHHcCCCHHHHHHHH
Confidence 45678876 5555555544 4555543
No 40
>PF08043 Xin: Xin repeat; InterPro: IPR012510 The repeat has the consensus sequence GDV(K/Q/R)(T/S/G)X(R/K/T) WLFETXPLD. This repeat motif is typically found in the N terminus of the proteins, with a copy number between 2 and 28 repeats. Direct evidence for binding to and stabilising F-actin has been found in the human protein (Q702N9 from SWISSPROT) []. The homologues in mouse and chicken localise in the adherens junction complex of the intercalated disc in cardiac muscle and in the myotendon junction of skeletal muscle. mXin may co-localise with Vinculin which is known to attach the actin to the cytoplasmic membrane []. It has been shown that the amino-terminus of human xin (CMYA1) binds the EVH1 domain of Mena/VASP/EVL, and the carboxy-terminus binds the, for the filamin family unique, domain 20 of filamin C []. This confirms the proposed role of xin repeat containing proteins as F-actin-binding adapter proteins.; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0030054 cell junction
Probab=23.65 E-value=27 Score=18.19 Aligned_cols=7 Identities=43% Similarity=1.265 Sum_probs=5.4
Q ss_pred Ccccccc
Q 033925 70 NWMFEGP 76 (108)
Q Consensus 70 nWmFe~p 76 (108)
.|+||.-
T Consensus 7 ~wlFEtq 13 (16)
T PF08043_consen 7 RWLFETQ 13 (16)
T ss_pred EEEeecc
Confidence 6999963
No 41
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis []. At present two classes of RFs can be distinguished. Class I RFs bind to ribosomes that have encountered a stop codon at their decoding site and induce release of the nascent polypeptide. Class II RFs are GTP-binding proteins that interact with class I RFs and enhance class I RF activity. In prokaryotes there are two class I RFs that act in a codon specific manner []: RF-1 (gene prfA) mediates UAA and UAG-dependent termination while RF-2 (gene prfB) mediates UAA and UGA-dependent termination. RF-1 and RF-2 are structurally and evolutionary related proteins which have been shown to be part of a larger family [].; GO: 0003747 translation release factor activity, 0006415 translational termination; PDB: 2JY9_A 1ZBT_A 1GQE_A 3F1G_X 3F1E_X 1RQ0_C 4DH9_Y 2JVA_A 1J26_A 3D5A_X ....
Probab=22.51 E-value=1.3e+02 Score=20.82 Aligned_cols=45 Identities=16% Similarity=0.316 Sum_probs=29.2
Q ss_pred ccccCCCCCCc-chh------hhhhHHHHHHHHHHHHHHHHHHhcccccCCc
Q 033925 27 ATDEFHFPSDL-ISI------QDRKDEALQVLRSDLMATLNKEVKSLDEDNW 71 (108)
Q Consensus 27 ~~ddfhfp~D~-is~------~~RKDeam~~Lk~dlma~L~keVksLdeDnW 71 (108)
.+.=.|.|..+ |.| ..=|+.||..|++.|++....+.+..-..-|
T Consensus 35 ~V~l~h~ptgi~v~~~~~Rsq~~Nr~~A~~~L~~~l~~~~~~~~~~~~~~~~ 86 (113)
T PF00472_consen 35 KVRLRHIPTGIVVKCQESRSQHQNREDALEKLREKLDEAYREKRREKTREIR 86 (113)
T ss_dssp EEEEEETTTTEEEEEESSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred EEEEEEecccEEEEEcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667665 333 3458999999999999988655544433333
No 42
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=22.26 E-value=85 Score=29.34 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=23.9
Q ss_pred CCCcchhhhhhHHHHHHHHH---HHHHH--HHHHhcccc
Q 033925 34 PSDLISIQDRKDEALQVLRS---DLMAT--LNKEVKSLD 67 (108)
Q Consensus 34 p~D~is~~~RKDeam~~Lk~---dlma~--L~keVksLd 67 (108)
-.|-||.|+|+.|.|+.|+. .+.+. |+.+||.|-
T Consensus 482 s~d~is~~~RR~eIi~gL~~l~~~ikevL~l~~~i~~la 520 (670)
T KOG1268|consen 482 SEDRVSKQERRKEIIDGLKDLPSQIKEVLELDPKIKDLA 520 (670)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 57889999999999998875 33332 345555554
No 43
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=21.86 E-value=1.2e+02 Score=22.24 Aligned_cols=32 Identities=9% Similarity=0.292 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCCcccccccceeEEeecC
Q 033925 45 DEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTA 86 (108)
Q Consensus 45 Deam~~Lk~dlma~L~keVksLdeDnWmFe~prSrI~LiSr~ 86 (108)
+|.|+.+|+-+ .+++.|.+.....-|-+-+|+
T Consensus 9 ~~~~~~~~~~~----------~~~~~W~~~~~~~gi~iy~r~ 40 (222)
T cd08871 9 DADFEEFKKLC----------DSTDGWKLKYNKNNVKVWTKN 40 (222)
T ss_pred HHHHHHHHHHh----------cCCCCcEEEEcCCCeEEEEee
Confidence 45666665543 156789999999999999986
No 44
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.24 E-value=89 Score=24.94 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcccccCCcc
Q 033925 54 DLMATLNKEVKSLDEDNWM 72 (108)
Q Consensus 54 dlma~L~keVksLdeDnWm 72 (108)
.-+..|+.||++|-.||-+
T Consensus 107 ~~~~~L~~Ev~~L~~DN~k 125 (248)
T PF08172_consen 107 QTISSLRREVESLRADNVK 125 (248)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999976
No 45
>PF06504 RepC: Replication protein C (RepC); InterPro: IPR010522 This family consists of several bacterial replication protein C (RepC) sequences.
Probab=20.98 E-value=1.6e+02 Score=24.62 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCCcccccccceeEEeecCCC
Q 033925 45 DEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAGG 88 (108)
Q Consensus 45 Deam~~Lk~dlma~L~keVksLdeDnWmFe~prSrI~LiSr~g~ 88 (108)
.++|..=+..|+++|. |+. ...|.-+--..-|-.|+||.+
T Consensus 241 ~~~~RkRR~~lR~AL~-El~---~~GW~V~e~~~g~~~I~RP~~ 280 (281)
T PF06504_consen 241 GSAMRKRRQRLRKALA-ELA---ALGWTVDEYAKGKWEIGRPKA 280 (281)
T ss_pred hHHHHHHHHHHHHHHH-HHH---HcCeEEeeccCccEEEeCCCC
Confidence 4455444444555554 444 459999988999999999964
No 46
>PF06999 Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: IPR009737 This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity [].
Probab=20.82 E-value=88 Score=23.10 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=36.1
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHhcccccCCcccccccceeEEeecCCCCC
Q 033925 37 LISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAGGFL 90 (108)
Q Consensus 37 ~is~~~RKDeam~~Lk~dlma~L~keVksLdeDnWmFe~prSrI~LiSr~g~~l 90 (108)
++=++-++|.--.++=..|.++|+++++...-+. .+|-.||+=|||=
T Consensus 136 LVCtHg~RD~rCg~~Gp~l~~~l~~~~~~~~l~~-------~~V~~iSHiGGHk 182 (230)
T PF06999_consen 136 LVCTHGKRDKRCGILGPPLARELEKELRERGLSR-------DRVWEISHIGGHK 182 (230)
T ss_pred EEcCCCCcCCchhcccHHHHHHHHHHhhhcCCcc-------ceEEEecccccce
Confidence 4667888998888888888899999888764221 2288999999974
No 47
>PF14819 QueF_N: Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term; PDB: 3UXV_C 3RJB_A 3BP1_D 3RZP_B 3RJ4_A 3UXJ_C 3S19_D 3RZQ_B.
Probab=20.24 E-value=35 Score=25.12 Aligned_cols=39 Identities=26% Similarity=0.332 Sum_probs=26.8
Q ss_pred cccccCCCCCCcchhhhh-----------------hHHHHHHHHHHHHHHHHHHhc
Q 033925 26 TATDEFHFPSDLISIQDR-----------------KDEALQVLRSDLMATLNKEVK 64 (108)
Q Consensus 26 ~~~ddfhfp~D~is~~~R-----------------KDeam~~Lk~dlma~L~keVk 64 (108)
+++-+|.+|+|..++-+= .+++.+.|..||-++...+|+
T Consensus 52 Vai~~~~vpa~SpniIESKSfKLYLNSfNqtrf~s~~~v~~~i~~DLS~~~g~~V~ 107 (110)
T PF14819_consen 52 VAIAEFTVPADSPNIIESKSFKLYLNSFNQTRFESWEAVQATIERDLSAAAGAPVS 107 (110)
T ss_dssp EEEEEEEEETTSSEEE-HHHHHHHHHTTTT-B-S-HHHHHHHHHHHHHHHHTS--E
T ss_pred EEEEEEEecCCCCcceeechhhhhhccccccccCCHHHHHHHHHHHHHHHcCCceE
Confidence 456678888888554433 477888888899888887774
No 48
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=20.22 E-value=1.2e+02 Score=21.64 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=13.6
Q ss_pred cccc---ccceeEEeecCCC
Q 033925 72 MFEG---PRSHIHLISTAGG 88 (108)
Q Consensus 72 mFe~---prSrI~LiSr~g~ 88 (108)
.++| ++-|||+|-|..|
T Consensus 88 ~~agq~V~HlH~HvIPr~~~ 107 (138)
T COG0537 88 KAAGQEVFHLHIHIIPRYKG 107 (138)
T ss_pred cccCcCcceEEEEEcCCcCC
Confidence 4556 8999999998854
Done!