Query 033926
Match_columns 108
No_of_seqs 172 out of 1102
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:52:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033926.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033926hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0031 CysK Cysteine synthase 100.0 2.1E-30 4.5E-35 198.0 10.0 98 8-105 2-105 (300)
2 PRK11761 cysM cysteine synthas 100.0 8.1E-30 1.8E-34 194.2 10.4 100 6-105 1-106 (296)
3 PLN02565 cysteine synthase 100.0 1.9E-29 4.1E-34 194.3 11.0 101 6-106 4-111 (322)
4 PLN00011 cysteine synthase 100.0 3.2E-29 7E-34 192.7 11.2 105 1-105 1-112 (323)
5 PLN03013 cysteine synthase 100.0 3E-29 6.6E-34 199.5 11.4 100 6-105 112-218 (429)
6 PLN02356 phosphateglycerate ki 100.0 3.4E-29 7.3E-34 199.0 11.0 102 5-106 41-148 (423)
7 PRK10717 cysteine synthase A; 100.0 1.4E-28 3E-33 189.2 11.0 100 6-105 2-107 (330)
8 TIGR01138 cysM cysteine syntha 100.0 2.3E-28 5E-33 185.6 10.6 95 11-105 2-102 (290)
9 PLN02556 cysteine synthase/L-3 100.0 4.7E-28 1E-32 189.7 11.0 101 6-106 48-155 (368)
10 TIGR01136 cysKM cysteine synth 100.0 4.5E-28 9.8E-33 184.1 10.3 95 12-106 2-102 (299)
11 PRK06110 hypothetical protein; 99.9 5.5E-28 1.2E-32 185.6 9.2 103 3-105 7-113 (322)
12 TIGR01139 cysK cysteine syntha 99.9 1.6E-27 3.4E-32 180.8 10.3 93 12-105 2-100 (298)
13 TIGR01137 cysta_beta cystathio 99.9 1.2E-27 2.6E-32 189.6 10.1 99 7-105 1-105 (454)
14 PRK07476 eutB threonine dehydr 99.9 9.2E-28 2E-32 184.3 9.1 102 3-105 5-110 (322)
15 PRK06608 threonine dehydratase 99.9 1.1E-27 2.3E-32 185.6 9.3 103 3-105 9-115 (338)
16 PLN02970 serine racemase 99.9 1.9E-27 4E-32 183.3 9.5 100 5-105 15-118 (328)
17 cd06447 D-Ser-dehyd D-Serine d 99.9 1.5E-27 3.3E-32 188.8 9.0 92 15-106 50-178 (404)
18 KOG1252 Cystathionine beta-syn 99.9 3.9E-27 8.5E-32 181.6 9.9 103 4-106 39-148 (362)
19 PRK06382 threonine dehydratase 99.9 2.9E-27 6.3E-32 186.7 8.9 101 4-105 12-116 (406)
20 PRK08526 threonine dehydratase 99.9 2.6E-27 5.7E-32 187.2 7.9 102 3-105 6-111 (403)
21 PRK08198 threonine dehydratase 99.9 3.3E-27 7.2E-32 185.7 8.3 101 4-105 9-113 (404)
22 PRK07048 serine/threonine dehy 99.9 4.9E-27 1.1E-31 180.0 8.6 102 3-105 10-115 (321)
23 PRK08246 threonine dehydratase 99.9 1E-26 2.2E-31 178.0 10.1 100 3-106 9-112 (310)
24 PRK08638 threonine dehydratase 99.9 6.1E-27 1.3E-31 181.1 8.7 102 3-105 13-118 (333)
25 PRK08639 threonine dehydratase 99.9 3.5E-27 7.7E-32 186.9 7.5 101 4-105 12-116 (420)
26 COG1171 IlvA Threonine dehydra 99.9 4.2E-27 9.2E-32 182.7 7.6 101 6-106 14-118 (347)
27 TIGR02991 ectoine_eutB ectoine 99.9 1.1E-26 2.5E-31 178.3 9.5 102 3-105 5-110 (317)
28 PRK08813 threonine dehydratase 99.9 3.2E-26 7E-31 178.4 10.7 97 3-106 25-125 (349)
29 PRK02991 D-serine dehydratase; 99.9 2E-26 4.4E-31 184.0 9.0 103 4-106 46-201 (441)
30 TIGR02079 THD1 threonine dehyd 99.9 1.7E-26 3.6E-31 182.8 8.1 101 4-105 3-107 (409)
31 PRK07334 threonine dehydratase 99.9 1.3E-26 2.9E-31 182.7 7.5 103 2-105 8-114 (403)
32 cd01562 Thr-dehyd Threonine de 99.9 2.6E-26 5.7E-31 173.6 8.6 104 2-106 2-109 (304)
33 PRK06815 hypothetical protein; 99.9 2.3E-26 5E-31 176.3 8.0 104 2-106 5-112 (317)
34 TIGR02035 D_Ser_am_lyase D-ser 99.9 4.3E-26 9.3E-31 181.7 8.9 93 14-106 67-196 (431)
35 PRK12483 threonine dehydratase 99.9 9.2E-26 2E-30 183.3 9.9 96 9-105 29-128 (521)
36 cd01561 CBS_like CBS_like: Thi 99.9 1.8E-25 3.9E-30 168.9 10.6 91 16-106 1-97 (291)
37 PRK06381 threonine synthase; V 99.9 1.3E-25 2.9E-30 171.7 9.4 94 11-106 9-107 (319)
38 PLN02550 threonine dehydratase 99.9 2.2E-25 4.8E-30 183.0 8.6 95 10-105 102-200 (591)
39 PRK07409 threonine synthase; V 99.9 3.1E-25 6.8E-30 172.1 8.9 93 11-105 25-122 (353)
40 KOG1481 Cysteine synthase [Ami 99.9 9.7E-26 2.1E-30 171.5 5.6 99 7-105 39-143 (391)
41 PRK06352 threonine synthase; V 99.9 3.8E-25 8.3E-30 171.9 8.8 92 11-105 22-119 (351)
42 TIGR01127 ilvA_1Cterm threonin 99.9 2.4E-25 5.1E-30 173.9 7.7 88 18-106 1-92 (380)
43 PRK06721 threonine synthase; R 99.9 5.7E-25 1.2E-29 170.9 9.1 92 11-105 22-119 (352)
44 cd01563 Thr-synth_1 Threonine 99.9 6.5E-25 1.4E-29 167.9 8.5 94 10-105 15-113 (324)
45 cd06448 L-Ser-dehyd Serine deh 99.9 8.6E-25 1.9E-29 167.8 8.7 88 17-105 1-94 (316)
46 KOG1251 Serine racemase [Signa 99.9 3.1E-25 6.7E-30 166.1 5.9 104 1-105 9-116 (323)
47 TIGR01124 ilvA_2Cterm threonin 99.9 1E-24 2.2E-29 176.5 9.3 97 9-106 9-109 (499)
48 PRK06450 threonine synthase; V 99.9 1.3E-24 2.8E-29 168.6 9.4 86 11-106 52-141 (338)
49 PRK08197 threonine synthase; V 99.9 1.4E-24 3E-29 170.8 8.4 94 11-106 73-171 (394)
50 PRK09224 threonine dehydratase 99.9 2.3E-24 4.9E-29 174.5 9.1 96 9-105 12-111 (504)
51 PRK07591 threonine synthase; V 99.9 2.4E-24 5.2E-29 171.0 8.6 93 12-106 84-181 (421)
52 PRK05638 threonine synthase; V 99.9 3.9E-24 8.5E-29 170.4 9.4 93 11-106 60-156 (442)
53 PRK06260 threonine synthase; V 99.9 4E-24 8.6E-29 168.4 9.0 93 11-105 61-159 (397)
54 TIGR00260 thrC threonine synth 99.9 7.3E-24 1.6E-28 162.4 7.2 93 11-105 17-115 (328)
55 PRK08206 diaminopropionate amm 99.9 1.5E-23 3.2E-28 165.6 7.9 101 5-105 30-159 (399)
56 PLN02569 threonine synthase 99.9 2.4E-23 5.2E-28 168.0 8.9 95 11-105 127-231 (484)
57 PF00291 PALP: Pyridoxal-phosp 99.9 2.2E-23 4.7E-28 156.7 7.9 94 11-106 1-100 (306)
58 PRK08329 threonine synthase; V 99.9 3.7E-23 8.1E-28 160.5 9.1 84 14-106 61-148 (347)
59 cd00640 Trp-synth-beta_II Tryp 99.9 8.4E-23 1.8E-27 150.5 10.2 89 18-106 1-94 (244)
60 TIGR01415 trpB_rel pyridoxal-p 99.9 2.5E-22 5.5E-27 159.7 10.6 91 13-105 63-164 (419)
61 KOG1250 Threonine/serine dehyd 99.9 1.3E-22 2.8E-27 159.4 7.6 99 7-106 56-158 (457)
62 PRK12391 tryptophan synthase s 99.9 3.5E-22 7.5E-27 159.2 10.2 100 4-105 61-173 (427)
63 TIGR00263 trpB tryptophan synt 99.9 2.1E-22 4.5E-27 158.4 8.6 95 9-105 41-145 (385)
64 TIGR03528 2_3_DAP_am_ly diamin 99.9 1.2E-22 2.6E-27 160.5 6.6 93 14-106 38-157 (396)
65 TIGR01747 diampropi_NH3ly diam 99.9 2.7E-22 5.7E-27 157.6 7.3 98 7-105 13-137 (376)
66 PRK04346 tryptophan synthase s 99.9 1.2E-21 2.5E-26 155.1 9.4 83 11-95 51-140 (397)
67 PRK13028 tryptophan synthase s 99.9 1.6E-21 3.5E-26 154.4 9.7 85 11-97 55-146 (402)
68 PLN02618 tryptophan synthase, 99.9 1.4E-21 3E-26 155.1 9.1 85 9-95 57-153 (410)
69 cd06446 Trp-synth_B Tryptophan 99.9 1.3E-21 2.8E-26 152.8 8.6 94 9-104 25-128 (365)
70 TIGR03844 cysteate_syn cysteat 99.9 7.4E-22 1.6E-26 156.1 7.2 84 14-99 59-154 (398)
71 PRK13802 bifunctional indole-3 99.8 3.2E-21 7E-26 160.8 9.8 93 11-105 319-426 (695)
72 PRK03910 D-cysteine desulfhydr 99.8 1E-20 2.2E-25 145.8 7.2 92 7-101 5-105 (331)
73 TIGR01275 ACC_deam_rel pyridox 99.8 1.9E-20 4.2E-25 142.7 8.1 86 15-103 5-100 (311)
74 PRK14045 1-aminocyclopropane-1 99.8 9.9E-21 2.1E-25 145.9 6.4 93 5-99 9-109 (329)
75 PRK13803 bifunctional phosphor 99.8 2.2E-20 4.8E-25 154.2 8.7 93 11-105 264-365 (610)
76 TIGR01274 ACC_deam 1-aminocycl 99.8 1.4E-19 3E-24 139.8 7.6 94 9-105 6-119 (337)
77 PRK12390 1-aminocyclopropane-1 99.8 1.2E-19 2.6E-24 140.1 6.7 88 8-98 6-105 (337)
78 cd06449 ACCD Aminocyclopropane 99.8 1.5E-19 3.2E-24 137.8 6.8 85 18-105 1-105 (307)
79 COG0498 ThrC Threonine synthas 99.7 3E-17 6.6E-22 130.4 7.1 90 14-105 73-170 (411)
80 KOG1395 Tryptophan synthase be 99.4 2E-13 4.4E-18 106.9 5.3 88 6-95 110-205 (477)
81 COG1350 Predicted alternative 99.4 1.1E-12 2.4E-17 102.0 5.9 94 2-95 59-161 (432)
82 COG0133 TrpB Tryptophan syntha 99.3 3.9E-12 8.5E-17 98.6 6.0 82 11-95 49-137 (396)
83 cd01560 Thr-synth_2 Threonine 99.3 1.9E-11 4.1E-16 98.6 7.9 80 18-105 88-177 (460)
84 PRK09225 threonine synthase; V 99.2 6.4E-11 1.4E-15 95.7 7.1 79 17-105 88-176 (462)
85 COG3048 DsdA D-serine dehydrat 98.0 1.7E-06 3.7E-11 67.5 1.5 92 15-106 76-204 (443)
86 COG2515 Acd 1-aminocyclopropan 97.4 0.00048 1E-08 53.5 5.7 86 8-96 6-100 (323)
87 PF01210 NAD_Gly3P_dh_N: NAD-d 75.8 3.2 7E-05 28.5 2.9 24 72-95 7-32 (157)
88 cd01075 NAD_bind_Leu_Phe_Val_D 72.7 22 0.00047 25.5 6.7 41 50-90 7-56 (200)
89 PF13450 NAD_binding_8: NAD(P) 64.2 12 0.00025 22.2 3.2 21 72-92 4-26 (68)
90 PRK14030 glutamate dehydrogena 62.0 39 0.00084 27.8 6.7 53 49-101 208-275 (445)
91 COG0159 TrpA Tryptophan syntha 61.8 38 0.00081 26.0 6.3 62 40-106 102-168 (265)
92 PF06068 TIP49: TIP49 C-termin 59.1 44 0.00096 27.2 6.4 50 44-94 27-86 (398)
93 PF00070 Pyr_redox: Pyridine n 58.3 23 0.00051 21.1 3.9 25 72-96 7-33 (80)
94 PTZ00079 NADP-specific glutama 56.1 56 0.0012 27.0 6.7 53 50-102 218-285 (454)
95 cd08230 glucose_DH Glucose deh 52.2 58 0.0013 24.7 6.0 34 72-105 181-216 (355)
96 COG1433 Uncharacterized conser 51.5 53 0.0012 22.2 5.1 79 9-94 14-95 (121)
97 cd05313 NAD_bind_2_Glu_DH NAD( 50.3 95 0.0021 23.5 6.8 52 50-101 19-85 (254)
98 COG0078 ArgF Ornithine carbamo 50.1 47 0.001 26.1 5.2 27 72-98 162-190 (310)
99 PF02737 3HCDH_N: 3-hydroxyacy 49.7 25 0.00054 24.8 3.4 23 72-94 7-31 (180)
100 PRK08849 2-octaprenyl-3-methyl 48.4 25 0.00054 27.2 3.5 22 72-93 11-34 (384)
101 TIGR01988 Ubi-OHases Ubiquinon 47.8 24 0.00051 26.8 3.2 24 72-95 7-32 (385)
102 PF01494 FAD_binding_3: FAD bi 47.5 27 0.00058 25.7 3.4 24 72-95 9-34 (356)
103 PLN02328 lysine-specific histo 46.4 41 0.00088 29.7 4.8 23 72-94 246-270 (808)
104 PF02579 Nitro_FeMo-Co: Dinitr 46.3 53 0.0012 19.8 4.2 73 10-91 4-80 (94)
105 PF00290 Trp_syntA: Tryptophan 44.9 67 0.0014 24.4 5.2 57 47-105 99-160 (259)
106 COG0654 UbiH 2-polyprenyl-6-me 43.0 33 0.00071 26.7 3.4 23 72-94 10-34 (387)
107 PRK08013 oxidoreductase; Provi 42.9 31 0.00068 26.8 3.3 23 72-94 11-35 (400)
108 PRK09126 hypothetical protein; 42.0 35 0.00075 26.2 3.4 21 72-92 11-33 (392)
109 PF13738 Pyr_redox_3: Pyridine 42.0 38 0.00083 23.2 3.3 25 70-94 2-30 (203)
110 PF00185 OTCace: Aspartate/orn 41.5 26 0.00056 24.3 2.4 26 73-98 13-42 (158)
111 TIGR03366 HpnZ_proposed putati 40.8 1.3E+02 0.0029 22.0 6.3 31 72-104 129-161 (280)
112 PRK07236 hypothetical protein; 40.2 38 0.00083 26.1 3.4 23 72-94 14-38 (386)
113 PF01266 DAO: FAD dependent ox 39.7 42 0.0009 24.7 3.4 23 72-94 7-31 (358)
114 COG1224 TIP49 DNA helicase TIP 39.4 66 0.0014 26.4 4.6 58 35-92 33-99 (450)
115 CHL00200 trpA tryptophan synth 39.3 1.4E+02 0.0031 22.6 6.3 54 50-105 106-164 (263)
116 PRK08850 2-octaprenyl-6-methox 39.3 39 0.00085 26.3 3.4 21 72-92 12-34 (405)
117 PRK06847 hypothetical protein; 39.0 42 0.00091 25.5 3.4 21 72-92 12-34 (375)
118 PRK07494 2-octaprenyl-6-methox 38.8 38 0.00082 26.0 3.2 23 72-94 15-39 (388)
119 PRK05868 hypothetical protein; 38.8 43 0.00094 26.0 3.5 21 72-92 9-31 (372)
120 TIGR01377 soxA_mon sarcosine o 38.4 44 0.00096 25.4 3.5 22 72-93 8-31 (380)
121 cd05211 NAD_bind_Glu_Leu_Phe_V 38.4 1.6E+02 0.0034 21.5 6.2 46 50-95 4-56 (217)
122 PRK06617 2-octaprenyl-6-methox 38.4 39 0.00084 26.1 3.2 22 72-93 9-32 (374)
123 PRK08773 2-octaprenyl-3-methyl 38.3 48 0.001 25.5 3.7 23 72-94 14-38 (392)
124 COG0026 PurK Phosphoribosylami 37.9 50 0.0011 26.6 3.7 29 72-100 9-39 (375)
125 PRK06184 hypothetical protein; 37.9 43 0.00093 27.0 3.5 22 72-93 11-34 (502)
126 KOG0025 Zn2+-binding dehydroge 37.4 1.2E+02 0.0026 24.2 5.6 68 33-103 124-203 (354)
127 PRK08163 salicylate hydroxylas 36.9 46 0.001 25.5 3.4 21 72-92 12-34 (396)
128 PRK05714 2-octaprenyl-3-methyl 36.8 40 0.00086 26.1 3.0 21 72-92 10-32 (405)
129 PRK07364 2-octaprenyl-6-methox 36.6 44 0.00096 25.8 3.3 21 72-92 26-48 (415)
130 PRK06753 hypothetical protein; 36.3 49 0.0011 25.2 3.4 21 72-92 8-30 (373)
131 PRK14031 glutamate dehydrogena 36.3 1.4E+02 0.0031 24.6 6.2 44 50-93 209-259 (444)
132 PRK06475 salicylate hydroxylas 36.2 55 0.0012 25.4 3.7 22 72-93 10-33 (400)
133 TIGR02032 GG-red-SF geranylger 36.0 54 0.0012 23.6 3.5 24 72-95 8-33 (295)
134 TIGR02360 pbenz_hydroxyl 4-hyd 35.8 50 0.0011 25.8 3.4 23 72-94 10-34 (390)
135 COG3150 Predicted esterase [Ge 35.8 1E+02 0.0022 22.5 4.7 53 49-102 42-98 (191)
136 PRK08335 translation initiatio 35.8 1.1E+02 0.0024 23.5 5.2 45 50-95 120-170 (275)
137 PRK09260 3-hydroxybutyryl-CoA 35.3 74 0.0016 23.7 4.2 23 72-94 9-33 (288)
138 PF00890 FAD_binding_2: FAD bi 34.2 60 0.0013 25.2 3.7 23 72-94 7-31 (417)
139 PRK08020 ubiF 2-octaprenyl-3-m 34.2 48 0.001 25.5 3.1 23 72-94 13-37 (391)
140 PF01262 AlaDh_PNT_C: Alanine 34.0 49 0.0011 22.8 2.9 20 72-91 28-49 (168)
141 PRK08244 hypothetical protein; 33.8 57 0.0012 26.2 3.6 22 72-93 10-33 (493)
142 PRK07588 hypothetical protein; 33.7 56 0.0012 25.2 3.4 22 72-93 8-31 (391)
143 PF03807 F420_oxidored: NADP o 33.5 70 0.0015 19.4 3.3 30 72-103 7-41 (96)
144 PRK12749 quinate/shikimate deh 33.2 2.2E+02 0.0047 21.7 6.8 24 72-95 132-157 (288)
145 TIGR01292 TRX_reduct thioredox 33.0 64 0.0014 23.4 3.5 22 72-93 8-31 (300)
146 KOG2680 DNA helicase TIP49, TB 32.9 45 0.00097 26.9 2.7 50 43-93 42-101 (454)
147 PRK07538 hypothetical protein; 32.8 58 0.0013 25.4 3.4 21 72-92 8-30 (413)
148 PRK06185 hypothetical protein; 32.4 64 0.0014 24.9 3.5 23 72-94 14-38 (407)
149 COG1063 Tdh Threonine dehydrog 32.1 1.3E+02 0.0029 23.2 5.3 32 72-105 177-210 (350)
150 PRK09414 glutamate dehydrogena 32.0 1.8E+02 0.0039 23.9 6.2 44 50-93 213-263 (445)
151 KOG1466 Translation initiation 31.7 1.4E+02 0.003 23.4 5.1 53 50-103 141-201 (313)
152 PF00208 ELFV_dehydrog: Glutam 31.6 1.3E+02 0.0029 22.4 5.0 42 50-91 12-61 (244)
153 PRK07608 ubiquinone biosynthes 31.5 65 0.0014 24.6 3.4 23 72-94 13-37 (388)
154 TIGR01984 UbiH 2-polyprenyl-6- 31.4 57 0.0012 24.9 3.1 23 72-94 7-32 (382)
155 TIGR02733 desat_CrtD C-3',4' d 31.2 70 0.0015 25.7 3.7 21 72-92 9-31 (492)
156 PRK08293 3-hydroxybutyryl-CoA 30.9 67 0.0015 24.0 3.3 23 72-94 11-35 (287)
157 PRK14804 ornithine carbamoyltr 30.6 1.8E+02 0.0038 22.6 5.7 27 72-98 162-190 (311)
158 PRK05732 2-octaprenyl-6-methox 30.2 66 0.0014 24.6 3.3 22 72-93 11-37 (395)
159 PRK06126 hypothetical protein; 30.2 77 0.0017 25.8 3.8 21 72-92 15-37 (545)
160 TIGR02734 crtI_fam phytoene de 30.2 66 0.0014 25.8 3.4 22 70-91 3-27 (502)
161 PLN02591 tryptophan synthase 29.9 2.4E+02 0.0053 21.2 6.7 54 50-105 93-151 (250)
162 PRK07045 putative monooxygenas 29.3 73 0.0016 24.5 3.4 21 72-92 13-35 (388)
163 TIGR03201 dearomat_had 6-hydro 29.2 2.2E+02 0.0048 21.5 6.0 39 63-104 162-206 (349)
164 PRK07233 hypothetical protein; 29.0 76 0.0017 24.4 3.5 23 72-94 7-31 (434)
165 PRK08132 FAD-dependent oxidore 29.0 84 0.0018 25.7 3.8 22 72-93 31-54 (547)
166 COG0052 RpsB Ribosomal protein 28.7 90 0.002 23.9 3.6 41 67-107 157-201 (252)
167 PRK12779 putative bifunctional 28.5 74 0.0016 28.5 3.6 21 72-92 314-336 (944)
168 TIGR03376 glycerol3P_DH glycer 28.1 83 0.0018 24.7 3.5 22 72-93 7-38 (342)
169 PRK11259 solA N-methyltryptoph 28.1 82 0.0018 23.9 3.4 23 72-94 11-35 (376)
170 PRK01747 mnmC bifunctional tRN 28.0 72 0.0016 26.9 3.4 22 72-93 268-291 (662)
171 PRK08243 4-hydroxybenzoate 3-m 27.5 87 0.0019 24.3 3.5 21 72-92 10-32 (392)
172 PRK08334 translation initiatio 27.2 85 0.0018 25.1 3.4 24 72-95 259-282 (356)
173 PRK14618 NAD(P)H-dependent gly 27.2 80 0.0017 24.0 3.2 23 72-94 12-36 (328)
174 TIGR01505 tartro_sem_red 2-hyd 27.2 1.2E+02 0.0026 22.6 4.1 29 72-103 7-37 (291)
175 PF07997 DUF1694: Protein of u 27.1 1.9E+02 0.004 19.4 4.6 83 7-96 6-99 (120)
176 PRK06371 translation initiatio 26.9 89 0.0019 24.7 3.5 24 72-95 236-259 (329)
177 TIGR01202 bchC 2-desacetyl-2-h 26.8 2.5E+02 0.0054 20.9 5.8 30 72-103 153-184 (308)
178 TIGR00670 asp_carb_tr aspartat 26.7 73 0.0016 24.6 2.9 24 73-96 162-187 (301)
179 TIGR00511 ribulose_e2b2 ribose 26.7 1.7E+02 0.0038 22.4 5.0 20 73-92 152-173 (301)
180 TIGR01989 COQ6 Ubiquinone bios 26.7 73 0.0016 25.2 3.0 22 72-93 8-35 (437)
181 PRK06035 3-hydroxyacyl-CoA deh 26.6 89 0.0019 23.3 3.4 23 72-94 11-35 (291)
182 PRK08334 translation initiatio 26.5 1.3E+02 0.0028 24.1 4.3 47 48-95 176-229 (356)
183 PRK12446 undecaprenyldiphospho 26.3 2.9E+02 0.0063 21.4 6.3 34 64-97 89-126 (352)
184 PRK12266 glpD glycerol-3-phosp 26.2 89 0.0019 25.5 3.5 22 72-93 14-37 (508)
185 PRK13111 trpA tryptophan synth 25.9 2.7E+02 0.0058 20.9 5.8 53 51-105 105-162 (258)
186 TIGR01790 carotene-cycl lycope 25.7 94 0.002 23.8 3.4 23 72-94 7-31 (388)
187 PRK06183 mhpA 3-(3-hydroxyphen 25.6 95 0.0021 25.4 3.6 23 72-94 18-42 (538)
188 PRK06522 2-dehydropantoate 2-r 25.5 1.2E+02 0.0027 22.2 4.0 23 72-94 8-32 (304)
189 PRK11101 glpA sn-glycerol-3-ph 25.5 92 0.002 25.8 3.5 22 72-93 14-37 (546)
190 PRK06834 hypothetical protein; 25.4 93 0.002 25.3 3.5 24 72-95 11-36 (488)
191 PF08323 Glyco_transf_5: Starc 25.4 74 0.0016 23.4 2.7 23 73-95 19-43 (245)
192 TIGR03329 Phn_aa_oxid putative 25.4 1.1E+02 0.0023 24.5 3.8 21 72-92 32-56 (460)
193 PRK10358 putative rRNA methyla 25.3 96 0.0021 21.5 3.1 23 72-94 12-35 (157)
194 PRK00856 pyrB aspartate carbam 25.3 1.7E+02 0.0037 22.6 4.8 26 73-98 168-195 (305)
195 PRK09853 putative selenate red 25.1 98 0.0021 28.2 3.7 23 72-94 547-571 (1019)
196 TIGR03364 HpnW_proposed FAD de 24.9 1.1E+02 0.0023 23.3 3.5 22 72-93 8-31 (365)
197 TIGR00524 eIF-2B_rel eIF-2B al 24.8 1.3E+02 0.0028 23.3 4.0 12 82-93 175-186 (303)
198 PRK08010 pyridine nucleotide-d 24.6 1E+02 0.0022 24.4 3.5 22 72-93 11-34 (441)
199 TIGR02023 BchP-ChlP geranylger 24.5 1E+02 0.0022 23.9 3.4 21 72-92 8-30 (388)
200 PLN02885 nicotinate phosphorib 24.2 3.2E+02 0.0069 23.2 6.4 46 60-105 307-366 (545)
201 PRK15317 alkyl hydroperoxide r 24.2 1E+02 0.0022 25.2 3.5 22 72-93 219-242 (517)
202 TIGR02819 fdhA_non_GSH formald 24.0 3.4E+02 0.0073 21.3 6.3 40 63-104 181-226 (393)
203 PRK05720 mtnA methylthioribose 24.0 1E+02 0.0022 24.4 3.4 23 72-94 246-268 (344)
204 cd08289 MDR_yhfp_like Yhfp put 23.9 2.9E+02 0.0064 20.1 5.9 21 72-92 156-178 (326)
205 PF01946 Thi4: Thi4 family; PD 23.9 1.1E+02 0.0025 23.0 3.4 25 68-92 19-47 (230)
206 PRK05335 tRNA (uracil-5-)-meth 23.6 1.1E+02 0.0024 25.1 3.6 22 72-93 10-33 (436)
207 COG0240 GpsA Glycerol-3-phosph 23.6 1.1E+02 0.0024 24.2 3.5 22 72-93 9-32 (329)
208 PLN02927 antheraxanthin epoxid 23.6 98 0.0021 26.8 3.4 21 72-92 89-111 (668)
209 TIGR03219 salicylate_mono sali 23.5 1.1E+02 0.0023 23.9 3.4 21 72-92 8-31 (414)
210 PRK08535 translation initiatio 23.2 2.1E+02 0.0046 22.1 4.9 26 72-97 127-156 (310)
211 PTZ00367 squalene epoxidase; P 23.2 2.1E+02 0.0044 24.1 5.2 23 72-94 41-65 (567)
212 TIGR03315 Se_ygfK putative sel 23.0 1.1E+02 0.0024 27.8 3.7 23 72-94 545-569 (1012)
213 PRK08274 tricarballylate dehyd 22.9 1.1E+02 0.0025 24.2 3.5 21 72-92 12-34 (466)
214 PRK06130 3-hydroxybutyryl-CoA 22.8 1.2E+02 0.0025 22.8 3.4 23 72-94 12-36 (311)
215 cd08274 MDR9 Medium chain dehy 22.7 3.2E+02 0.007 20.2 6.1 32 61-92 171-209 (350)
216 COG1184 GCD2 Translation initi 22.7 2.1E+02 0.0047 22.4 4.8 45 50-95 130-180 (301)
217 PRK13369 glycerol-3-phosphate 22.7 1.2E+02 0.0025 24.7 3.5 23 72-94 14-38 (502)
218 TIGR01751 crot-CoA-red crotony 22.7 3E+02 0.0064 21.3 5.7 30 72-104 199-230 (398)
219 PRK14619 NAD(P)H-dependent gly 22.4 1.2E+02 0.0025 23.0 3.3 23 72-94 12-36 (308)
220 COG3380 Predicted NAD/FAD-depe 22.4 1.2E+02 0.0027 23.9 3.4 21 72-92 9-31 (331)
221 PRK07190 hypothetical protein; 22.4 1.1E+02 0.0024 24.9 3.4 21 72-92 13-35 (487)
222 cd08246 crotonyl_coA_red croto 22.3 3.1E+02 0.0068 21.0 5.8 30 72-104 203-234 (393)
223 PRK12769 putative oxidoreducta 22.3 1.1E+02 0.0024 25.9 3.4 21 72-92 335-357 (654)
224 PLN02985 squalene monooxygenas 22.2 1.2E+02 0.0027 24.9 3.6 23 72-94 51-75 (514)
225 PRK06129 3-hydroxyacyl-CoA deh 22.2 1.3E+02 0.0029 22.7 3.6 23 72-94 10-34 (308)
226 PRK05772 translation initiatio 22.1 1.2E+02 0.0026 24.3 3.4 25 72-96 267-291 (363)
227 KOG0815 60S acidic ribosomal p 22.1 68 0.0015 24.3 1.9 86 1-90 55-147 (245)
228 TIGR03140 AhpF alkyl hydropero 22.0 1.2E+02 0.0025 24.8 3.5 22 72-93 220-243 (515)
229 PLN02477 glutamate dehydrogena 22.0 3.8E+02 0.0082 21.8 6.3 45 50-94 187-238 (410)
230 PF12606 RELT: Tumour necrosis 21.9 61 0.0013 18.6 1.3 29 72-100 13-43 (50)
231 PF01008 IF-2B: Initiation fac 21.7 1.2E+02 0.0027 22.5 3.3 23 72-94 197-219 (282)
232 smart00460 TGc Transglutaminas 21.7 1.3E+02 0.0029 16.7 2.8 22 72-93 9-32 (68)
233 PRK00257 erythronate-4-phospha 21.7 2.4E+02 0.0052 22.6 5.0 40 55-94 103-148 (381)
234 TIGR02279 PaaC-3OHAcCoADH 3-hy 21.5 1.7E+02 0.0036 24.2 4.3 28 72-102 13-42 (503)
235 PRK06019 phosphoribosylaminoim 21.5 1.6E+02 0.0035 22.9 4.0 24 72-95 10-35 (372)
236 PF00702 Hydrolase: haloacid d 21.4 1.6E+02 0.0035 20.0 3.7 51 51-104 131-188 (215)
237 TIGR00262 trpA tryptophan synt 21.4 3.5E+02 0.0077 20.2 6.5 54 50-105 102-160 (256)
238 PRK15461 NADH-dependent gamma- 21.4 1.9E+02 0.004 21.8 4.2 22 72-93 9-32 (296)
239 PRK00711 D-amino acid dehydrog 21.2 1.3E+02 0.0027 23.3 3.4 21 72-92 8-30 (416)
240 PRK07530 3-hydroxybutyryl-CoA 21.2 1.3E+02 0.0029 22.4 3.4 23 72-94 12-36 (292)
241 COG1233 Phytoene dehydrogenase 21.2 1.1E+02 0.0025 24.8 3.2 21 72-92 11-33 (487)
242 TIGR00292 thiazole biosynthesi 21.2 1.4E+02 0.0031 22.1 3.5 20 72-91 29-50 (254)
243 PRK10157 putative oxidoreducta 21.2 1.3E+02 0.0028 23.9 3.5 22 72-93 13-36 (428)
244 PLN02464 glycerol-3-phosphate 21.2 1.2E+02 0.0026 25.7 3.4 56 34-91 40-100 (627)
245 cd01560 Thr-synth_2 Threonine 21.2 3E+02 0.0065 22.6 5.6 28 72-99 255-286 (460)
246 TIGR02730 carot_isom carotene 21.1 1.3E+02 0.0027 24.3 3.4 20 72-91 8-29 (493)
247 PRK09754 phenylpropionate diox 21.0 3.4E+02 0.0073 21.1 5.7 24 72-95 152-177 (396)
248 PRK12831 putative oxidoreducta 21.0 1.2E+02 0.0027 24.4 3.4 21 72-92 148-170 (464)
249 COG0604 Qor NADPH:quinone redu 21.0 3.7E+02 0.0079 20.7 5.9 31 62-92 137-174 (326)
250 TIGR03682 arCOG04112 arCOG0411 20.8 3.4E+02 0.0074 21.0 5.6 50 53-104 203-261 (308)
251 PRK12810 gltD glutamate syntha 20.5 1.3E+02 0.0029 24.2 3.4 23 72-94 151-175 (471)
252 KOG4175 Tryptophan synthase al 20.5 3.4E+02 0.0075 20.5 5.3 64 38-106 101-169 (268)
253 KOG2614 Kynurenine 3-monooxyge 20.4 1.5E+02 0.0032 24.4 3.6 25 68-92 4-32 (420)
254 PRK07066 3-hydroxybutyryl-CoA 20.3 1.4E+02 0.003 23.3 3.4 23 72-94 15-39 (321)
255 PRK13512 coenzyme A disulfide 20.1 3E+02 0.0066 21.8 5.4 24 72-95 156-181 (438)
256 TIGR03451 mycoS_dep_FDH mycoth 20.1 3.5E+02 0.0075 20.5 5.5 41 61-103 170-216 (358)
257 TIGR01915 npdG NADPH-dependent 20.0 1.5E+02 0.0034 21.1 3.4 21 72-92 9-31 (219)
258 PRK10015 oxidoreductase; Provi 20.0 1.4E+02 0.003 23.8 3.5 21 72-92 13-35 (429)
259 PRK06116 glutathione reductase 20.0 1.4E+02 0.003 23.7 3.4 22 72-93 12-35 (450)
No 1
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=99.97 E-value=2.1e-30 Score=198.03 Aligned_cols=98 Identities=38% Similarity=0.562 Sum_probs=93.1
Q ss_pred HHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe----cchHHHHH-HH-
Q 033926 8 KKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF----NGNSPILK-LI- 81 (108)
Q Consensus 8 ~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v----sGN~g~al-~~- 81 (108)
++++.+.+|+|||+++.++....+++||+|+|++||+||.|||.|++||..|+++|.++||.+| |||+|+|| ++
T Consensus 2 ~~~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~va 81 (300)
T COG0031 2 YESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVA 81 (300)
T ss_pred ccchHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHHH
Confidence 4678899999999999999877789999999999999999999999999999999999999987 99999999 99
Q ss_pred HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 82 NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 82 ~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
+.+|+++++|||+++|++|+++|+
T Consensus 82 a~~Gy~~iivmP~~~S~er~~~l~ 105 (300)
T COG0031 82 AAKGYRLIIVMPETMSQERRKLLR 105 (300)
T ss_pred HHcCCcEEEEeCCCCCHHHHHHHH
Confidence 999999999999999999999886
No 2
>PRK11761 cysM cysteine synthase B; Provisional
Probab=99.96 E-value=8.1e-30 Score=194.17 Aligned_cols=100 Identities=34% Similarity=0.437 Sum_probs=91.9
Q ss_pred hhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe----cchHHHHH-H
Q 033926 6 EIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF----NGNSPILK-L 80 (108)
Q Consensus 6 ~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v----sGN~g~al-~ 80 (108)
+++++|.+.+++|||++++++....|.+||+|+|++|||||||||+|.+++..+.++|.+.+|.++ +||||+|+ +
T Consensus 1 ~~~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~ 80 (296)
T PRK11761 1 MAYPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDTLIEATSGNTGIALAM 80 (296)
T ss_pred CccccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHH
Confidence 357889999999999999998776788999999999999999999999999999999987777433 99999999 9
Q ss_pred H-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 81 I-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 81 ~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
+ +.+|++|+||||+++|++|+++++
T Consensus 81 ~a~~~G~~~~i~~p~~~~~~k~~~~~ 106 (296)
T PRK11761 81 IAAIKGYRMKLIMPENMSQERRAAMR 106 (296)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHH
Confidence 9 999999999999999999999886
No 3
>PLN02565 cysteine synthase
Probab=99.96 E-value=1.9e-29 Score=194.34 Aligned_cols=101 Identities=58% Similarity=0.871 Sum_probs=90.6
Q ss_pred hhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCC-e-Ee---cchHHHHH-
Q 033926 6 EIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPG-K-VF---NGNSPILK- 79 (108)
Q Consensus 6 ~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~-~v---sGN~g~al- 79 (108)
.+++++.+.+|+|||++++.+....+.+||+|+|++|||||||||+|++++..+.++|.+.+| . ++ |||||+|+
T Consensus 4 ~~~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA 83 (322)
T PLN02565 4 SIAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLA 83 (322)
T ss_pred hhhhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHH
Confidence 456678999999999999887655567999999999999999999999999999999987777 2 23 99999999
Q ss_pred HH-HHcCCcEEEEecCCCCHHHHhhccc
Q 033926 80 LI-NHKNYAMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 80 ~~-~~~G~~~~ivvp~~~~~~k~~~~~~ 106 (108)
++ +.+|++|+||||+++|+.|+++|+-
T Consensus 84 ~~a~~~G~~~~ivvp~~~~~~k~~~i~~ 111 (322)
T PLN02565 84 FMAAAKGYKLIITMPASMSLERRIILLA 111 (322)
T ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHH
Confidence 99 9999999999999999999999863
No 4
>PLN00011 cysteine synthase
Probab=99.96 E-value=3.2e-29 Score=192.71 Aligned_cols=105 Identities=64% Similarity=0.950 Sum_probs=97.4
Q ss_pred CcchhhhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCC-e-Ee---cchH
Q 033926 1 MEDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPG-K-VF---NGNS 75 (108)
Q Consensus 1 ~~~~~~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~-~v---sGN~ 75 (108)
||+.+..++++.+.+++|||++++++....+.+||+|+|++|||||||||+|.+++..+.++|.+.+| . ++ +|||
T Consensus 1 ~~~~~~~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~ 80 (323)
T PLN00011 1 MEDRCLIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNT 80 (323)
T ss_pred CcchhhHHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChH
Confidence 89999999999999999999999988765568999999999999999999999999999999988877 3 33 9999
Q ss_pred HHHH-HH-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 76 PILK-LI-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 76 g~al-~~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
|+|+ ++ +.+|++|+||||+++++.|+++++
T Consensus 81 g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~ 112 (323)
T PLN00011 81 GIGLACIGAARGYKVILVMPSTMSLERRIILR 112 (323)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH
Confidence 9999 99 999999999999999999999875
No 5
>PLN03013 cysteine synthase
Probab=99.96 E-value=3e-29 Score=199.53 Aligned_cols=100 Identities=48% Similarity=0.813 Sum_probs=92.5
Q ss_pred hhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCC-e-Ee---cchHHHHH-
Q 033926 6 EIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPG-K-VF---NGNSPILK- 79 (108)
Q Consensus 6 ~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~-~v---sGN~g~al- 79 (108)
.++++|.+.+|+|||++++.+....+++||+|+|++|||||||||+|+++|..++++|.+.+| . +| |||+|+|+
T Consensus 112 ~~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA 191 (429)
T PLN03013 112 NIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLA 191 (429)
T ss_pred HHHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHH
Confidence 467889999999999999998776678999999999999999999999999999999998888 3 33 99999999
Q ss_pred HH-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 80 LI-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 80 ~~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
++ +.+|++++||||+++|++|+++|+
T Consensus 192 ~~a~~~G~~~~VvvP~~~s~~K~~~ir 218 (429)
T PLN03013 192 FIAASRGYRLILTMPASMSMERRVLLK 218 (429)
T ss_pred HHHHHcCCCEEEEECCCCcHHHHHHHH
Confidence 99 999999999999999999999986
No 6
>PLN02356 phosphateglycerate kinase
Probab=99.96 E-value=3.4e-29 Score=199.03 Aligned_cols=102 Identities=25% Similarity=0.397 Sum_probs=92.5
Q ss_pred hhhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe----cchHHHHH-
Q 033926 5 CEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF----NGNSPILK- 79 (108)
Q Consensus 5 ~~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v----sGN~g~al- 79 (108)
...+.++.+++|+|||+++++++...|.+||+|+|++|||||||||+|+++|..|.++|.+.++.+| |||||+|+
T Consensus 41 ~~~~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~VveaSSGN~g~alA 120 (423)
T PLN02356 41 KKPRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAISLA 120 (423)
T ss_pred cchhhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCEEEEeCCHHHHHHHH
Confidence 3456778899999999999998877788999999999999999999999999999999988665544 99999999
Q ss_pred HH-HHcCCcEEEEecCCCCHHHHhhccc
Q 033926 80 LI-NHKNYAMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 80 ~~-~~~G~~~~ivvp~~~~~~k~~~~~~ 106 (108)
++ +.+|++|+||||+++|++|+++|+-
T Consensus 121 ~~aa~~G~~~~ivvP~~~s~~K~~~ir~ 148 (423)
T PLN02356 121 TVAPAYGCKCHVVIPDDVAIEKSQILEA 148 (423)
T ss_pred HHHHHcCCcEEEEECCCCcHHHHHHHHH
Confidence 99 9999999999999999999999863
No 7
>PRK10717 cysteine synthase A; Provisional
Probab=99.96 E-value=1.4e-28 Score=189.15 Aligned_cols=100 Identities=33% Similarity=0.494 Sum_probs=92.3
Q ss_pred hhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeE-e---cchHHHHH-H
Q 033926 6 EIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKV-F---NGNSPILK-L 80 (108)
Q Consensus 6 ~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~-v---sGN~g~al-~ 80 (108)
.+++++.+.+|+|||++++++++..|++||+|+|++|||||||||+|.+++..+.+.|.+.+|.+ + +||||+|+ +
T Consensus 2 ~~~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~ 81 (330)
T PRK10717 2 KIFEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIGLAL 81 (330)
T ss_pred chhhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHH
Confidence 35788999999999999999987778899999999999999999999999999999998777643 3 99999999 9
Q ss_pred H-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 81 I-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 81 ~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
+ +.+|++|+||||+.+++.|+++++
T Consensus 82 ~a~~~G~~~~vv~p~~~~~~k~~~~~ 107 (330)
T PRK10717 82 VAAARGYKTVIVMPETQSQEKKDLLR 107 (330)
T ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHH
Confidence 9 999999999999999999999876
No 8
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=99.95 E-value=2.3e-28 Score=185.59 Aligned_cols=95 Identities=34% Similarity=0.466 Sum_probs=87.7
Q ss_pred HhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe----cchHHHHH-HH-HHc
Q 033926 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF----NGNSPILK-LI-NHK 84 (108)
Q Consensus 11 i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v----sGN~g~al-~~-~~~ 84 (108)
|.+.+|+|||++++++....|.+||+|+|++|||||||||+|.+++..+.++|.+.+|..+ +||||+|+ ++ +.+
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~ 81 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALK 81 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHc
Confidence 5678999999999998877788999999999999999999999999999999987777443 99999999 99 999
Q ss_pred CCcEEEEecCCCCHHHHhhcc
Q 033926 85 NYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 85 G~~~~ivvp~~~~~~k~~~~~ 105 (108)
|++|+||||+++++.|+++++
T Consensus 82 G~~~~i~~p~~~~~~k~~~~~ 102 (290)
T TIGR01138 82 GYRMKLLMPDNMSQERKAAMR 102 (290)
T ss_pred CCeEEEEECCCCCHHHHHHHH
Confidence 999999999999999999876
No 9
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=99.95 E-value=4.7e-28 Score=189.66 Aligned_cols=101 Identities=48% Similarity=0.680 Sum_probs=92.7
Q ss_pred hhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCe--Ee---cchHHHHH-
Q 033926 6 EIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK--VF---NGNSPILK- 79 (108)
Q Consensus 6 ~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~--~v---sGN~g~al- 79 (108)
+++.++...+|+|||++++++....|++||+|+|++|||||||||+|+++|..++++|.+.||. ++ +||||+|+
T Consensus 48 ~~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA 127 (368)
T PLN02556 48 KIKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLA 127 (368)
T ss_pred hhhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHH
Confidence 4567888999999999999987777889999999999999999999999999999999998884 23 99999999
Q ss_pred HH-HHcCCcEEEEecCCCCHHHHhhccc
Q 033926 80 LI-NHKNYAMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 80 ~~-~~~G~~~~ivvp~~~~~~k~~~~~~ 106 (108)
++ +.+|++|+||||+.++++|+++++-
T Consensus 128 ~~a~~~G~~~~ivvp~~~~~~k~~~lr~ 155 (368)
T PLN02556 128 FMAAMKGYKMILTMPSYTSLERRVTMRA 155 (368)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHH
Confidence 99 9999999999999999999998863
No 10
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=99.95 E-value=4.5e-28 Score=184.05 Aligned_cols=95 Identities=41% Similarity=0.643 Sum_probs=87.2
Q ss_pred hcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe----cchHHHHH-HH-HHcC
Q 033926 12 TELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF----NGNSPILK-LI-NHKN 85 (108)
Q Consensus 12 ~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v----sGN~g~al-~~-~~~G 85 (108)
.+++++|||++++.++...+.+||+|+|++|||||||||+|.+++..+.+.|.+.+|.++ +||||+|+ ++ +.+|
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G 81 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAMVAAAKG 81 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcC
Confidence 467999999999999877788999999999999999999999999999999987777433 99999999 99 9999
Q ss_pred CcEEEEecCCCCHHHHhhccc
Q 033926 86 YAMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 86 ~~~~ivvp~~~~~~k~~~~~~ 106 (108)
++|+||||+++++.|+++++-
T Consensus 82 ~~~~i~vp~~~~~~k~~~~~~ 102 (299)
T TIGR01136 82 YKLILTMPETMSLERRKLLRA 102 (299)
T ss_pred CcEEEEECCCCCHHHHHHHHH
Confidence 999999999999999998863
No 11
>PRK06110 hypothetical protein; Provisional
Probab=99.95 E-value=5.5e-28 Score=185.58 Aligned_cols=103 Identities=15% Similarity=0.070 Sum_probs=92.2
Q ss_pred chhhhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-
Q 033926 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK- 79 (108)
Q Consensus 3 ~~~~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al- 79 (108)
....++++|...+++|||++++++++..|.+||+|+|++||+||||||+|.+++..+.++|...++++. +||||+|+
T Consensus 7 ~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~~~vv~aSsGN~g~alA 86 (322)
T PRK06110 7 ELEAAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRVRGVISATRGNHGQSVA 86 (322)
T ss_pred HHHHHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCCceEEEECCCHHHHHHH
Confidence 345667889999999999999999877788999999999999999999999999999887765566443 99999999
Q ss_pred HH-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 80 LI-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 80 ~~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
++ +.+|++|+||||+++++.|+++++
T Consensus 87 ~~a~~~G~~~~ivvp~~~~~~k~~~i~ 113 (322)
T PRK06110 87 FAARRHGLAATIVVPHGNSVEKNAAMR 113 (322)
T ss_pred HHHHHcCCCEEEEEcCCCCHHHHHHHH
Confidence 99 999999999999999999998875
No 12
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=99.95 E-value=1.6e-27 Score=180.85 Aligned_cols=93 Identities=40% Similarity=0.661 Sum_probs=84.4
Q ss_pred hcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe----cchHHHHH-HH-HHcC
Q 033926 12 TELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF----NGNSPILK-LI-NHKN 85 (108)
Q Consensus 12 ~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v----sGN~g~al-~~-~~~G 85 (108)
.+++|+|||+++++ ....+.+||+|+|++|||||||||+|.+++..+.++|.+.+|.++ +||||+|+ ++ +.+|
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G 80 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAMVAAARG 80 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHHHHHHHHHcC
Confidence 46799999999998 445678999999999999999999999999999999987777433 99999999 99 9999
Q ss_pred CcEEEEecCCCCHHHHhhcc
Q 033926 86 YAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 86 ~~~~ivvp~~~~~~k~~~~~ 105 (108)
++|+||||+++++.|+++|+
T Consensus 81 l~~~i~vp~~~~~~k~~~~~ 100 (298)
T TIGR01139 81 YKLILTMPETMSIERRKLLK 100 (298)
T ss_pred CeEEEEeCCccCHHHHHHHH
Confidence 99999999999999998876
No 13
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.95 E-value=1.2e-27 Score=189.62 Aligned_cols=99 Identities=37% Similarity=0.566 Sum_probs=90.8
Q ss_pred hHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe----cchHHHHH-HH
Q 033926 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF----NGNSPILK-LI 81 (108)
Q Consensus 7 ~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v----sGN~g~al-~~ 81 (108)
+++++.+.+++|||+++++++...+++||+|+|++|||||||||+|.+++..+.++|.+.+|.++ +||||+|+ ++
T Consensus 1 ~~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~ssGN~g~alA~~ 80 (454)
T TIGR01137 1 IRDNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDTIIEPTSGNTGIGLALV 80 (454)
T ss_pred CccchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHH
Confidence 35678889999999999999877778999999999999999999999999999999987777443 99999999 99
Q ss_pred -HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 82 -NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 82 -~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
+.+|++|+||||+++|++|+++++
T Consensus 81 a~~~G~~~~iv~p~~~~~~k~~~~~ 105 (454)
T TIGR01137 81 AAIKGYKCIIVLPEKMSNEKVDVLK 105 (454)
T ss_pred HHHcCCeEEEEeCCCcCHHHHHHHH
Confidence 999999999999999999999875
No 14
>PRK07476 eutB threonine dehydratase; Provisional
Probab=99.95 E-value=9.2e-28 Score=184.34 Aligned_cols=102 Identities=19% Similarity=0.151 Sum_probs=91.6
Q ss_pred chhhhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-
Q 033926 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK- 79 (108)
Q Consensus 3 ~~~~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al- 79 (108)
+...++++|.+++++|||+++++++...|.+||+|+|++|||||||||+|.++|..+.+.|.. .+.+. +||||+|+
T Consensus 5 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~~-~gvv~aSsGN~g~alA 83 (322)
T PRK07476 5 DIYRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQERA-RGVVTASTGNHGRALA 83 (322)
T ss_pred HHHHHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhhC-CeEEEECCChHHHHHH
Confidence 345678999999999999999998877788999999999999999999999999999988753 34333 99999999
Q ss_pred HH-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 80 LI-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 80 ~~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
++ +.+|++|+||||+++|+.|+++++
T Consensus 84 ~~a~~~G~~~~i~vp~~~~~~k~~~~~ 110 (322)
T PRK07476 84 YAARALGIRATICMSRLVPANKVDAIR 110 (322)
T ss_pred HHHHHhCCCEEEEeCCCCCHHHHHHHH
Confidence 99 999999999999999999999876
No 15
>PRK06608 threonine dehydratase; Provisional
Probab=99.95 E-value=1.1e-27 Score=185.58 Aligned_cols=103 Identities=14% Similarity=0.104 Sum_probs=92.6
Q ss_pred chhhhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-
Q 033926 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK- 79 (108)
Q Consensus 3 ~~~~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al- 79 (108)
+...++++|.+.+++|||++++++++..|.+||+|+|++||+||||||+|.+++.++.++|.+..+.+. +||||+|+
T Consensus 9 ~i~~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~~vv~~SsGN~g~alA 88 (338)
T PRK06608 9 NIAAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLPDKIVAYSTGNHGQAVA 88 (338)
T ss_pred HHHHHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcCCeEEEECCCHHHHHHH
Confidence 345678899999999999999999877788999999999999999999999999999998865433332 99999999
Q ss_pred HH-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 80 LI-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 80 ~~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
++ +.+|++|+||||++++++|+++++
T Consensus 89 ~~a~~~G~~~~vv~p~~~~~~k~~~l~ 115 (338)
T PRK06608 89 YASKLFGIKTRIYLPLNTSKVKQQAAL 115 (338)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHH
Confidence 99 999999999999999999999876
No 16
>PLN02970 serine racemase
Probab=99.95 E-value=1.9e-27 Score=183.27 Aligned_cols=100 Identities=19% Similarity=0.126 Sum_probs=88.0
Q ss_pred hhhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-HH
Q 033926 5 CEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-LI 81 (108)
Q Consensus 5 ~~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~~ 81 (108)
..+++++.+.+++|||++++++++..|.+||+|+|++|||||||||+|.+++..+.+++. ..+.+. +||+|+|+ ++
T Consensus 15 ~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~-~~~vv~aSsGN~g~alA~~ 93 (328)
T PLN02970 15 REARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA-EKGVVTHSSGNHAAALALA 93 (328)
T ss_pred HHHHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc-CCeEEEECCcHHHHHHHHH
Confidence 345678899999999999999887678899999999999999999999999999876543 234333 99999999 99
Q ss_pred -HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 82 -NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 82 -~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
+.+|++|+||||++++++|+++++
T Consensus 94 a~~~G~~~~ivvp~~~~~~k~~~~~ 118 (328)
T PLN02970 94 AKLRGIPAYIVVPKNAPACKVDAVI 118 (328)
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHH
Confidence 999999999999999999999876
No 17
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=99.94 E-value=1.5e-27 Score=188.82 Aligned_cols=92 Identities=14% Similarity=0.183 Sum_probs=81.4
Q ss_pred cCCCceeEccCccCCCC--------ceEEEEeCCCCC-CcchhhHHHHHHHHH-----HHHcCCCCCCe-----------
Q 033926 15 IGHTPMVYLNNVVDGCV--------AHIAAKLEMMQP-CSSVKDRIAYSMIKD-----AEDKGLITPGK----------- 69 (108)
Q Consensus 15 v~~TPLv~~~~l~~~~~--------~~i~~KlE~~np-tGS~K~R~a~~~l~~-----a~~~g~~~~g~----------- 69 (108)
+++|||++++.++...| .+||+|+|++|| |||||||+|++++.. +++.|.+.+|.
T Consensus 50 ~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~ 129 (404)
T cd06447 50 IIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFR 129 (404)
T ss_pred ccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhh
Confidence 99999999998876443 799999999999 999999999999864 77788876653
Q ss_pred -------Ee---cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhhccc
Q 033926 70 -------VF---NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 70 -------~v---sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~~~~ 106 (108)
++ |||||+|+ ++ +.+|++|+||||+++|++|+++|+-
T Consensus 130 ~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira 178 (404)
T cd06447 130 KLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRS 178 (404)
T ss_pred hcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHH
Confidence 33 99999999 99 9999999999999999999999863
No 18
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=99.94 E-value=3.9e-27 Score=181.59 Aligned_cols=103 Identities=47% Similarity=0.648 Sum_probs=95.2
Q ss_pred hhhhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCe-Ee----cchHHHH
Q 033926 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK-VF----NGNSPIL 78 (108)
Q Consensus 4 ~~~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~-~v----sGN~g~a 78 (108)
-..+..++.+.+|+|||+.++++..++.++|++|+|++||+||.|||.|+.|+..|+.+|.+.||. ++ |||+|++
T Consensus 39 ~~~~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGig 118 (362)
T KOG1252|consen 39 RILILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIG 118 (362)
T ss_pred hhhhhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHH
Confidence 345667888999999999999997788899999999999999999999999999999999999995 44 9999999
Q ss_pred H-HH-HHcCCcEEEEecCCCCHHHHhhccc
Q 033926 79 K-LI-NHKNYAMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 79 l-~~-~~~G~~~~ivvp~~~~~~k~~~~~~ 106 (108)
| ++ +..||+|+++||++++.+|+.+++.
T Consensus 119 LA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a 148 (362)
T KOG1252|consen 119 LAYMAALRGYKCIITMPEKMSKEKRILLRA 148 (362)
T ss_pred HHHHHHHcCceEEEEechhhhHHHHHHHHH
Confidence 9 99 9999999999999999999998863
No 19
>PRK06382 threonine dehydratase; Provisional
Probab=99.94 E-value=2.9e-27 Score=186.65 Aligned_cols=101 Identities=18% Similarity=0.104 Sum_probs=90.0
Q ss_pred hhhhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-H
Q 033926 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-L 80 (108)
Q Consensus 4 ~~~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~ 80 (108)
...++++|.+.+++|||++++.++...|++||+|+|++|||||||||+|++++..+.+.+ ..+|++. +||||+|+ +
T Consensus 12 i~~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~-~~~gvv~aSsGN~g~a~A~ 90 (406)
T PRK06382 12 ILYAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDE-LRNGVITASAGNHAQGVAY 90 (406)
T ss_pred HHHHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhc-cCCeEEEECCCHHHHHHHH
Confidence 345678999999999999999998777889999999999999999999999999887654 3456544 99999999 9
Q ss_pred H-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 81 I-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 81 ~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
+ +.+|++|+||||+++|+.|+++++
T Consensus 91 aa~~~G~~~~ivmp~~~~~~k~~~~~ 116 (406)
T PRK06382 91 AASINGIDAKIVMPEYTIPQKVNAVE 116 (406)
T ss_pred HHHHcCCCEEEEEcCCCHHHHHHHHH
Confidence 9 999999999999999999998875
No 20
>PRK08526 threonine dehydratase; Provisional
Probab=99.94 E-value=2.6e-27 Score=187.20 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=90.6
Q ss_pred chhhhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-
Q 033926 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK- 79 (108)
Q Consensus 3 ~~~~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al- 79 (108)
....+++++.+.+++|||++++++++..|++||+|+|++|||||||||+|++++..+.+.+. ..|++. +||||+|+
T Consensus 6 ~i~~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~-~~gVV~aSaGNhg~avA 84 (403)
T PRK08526 6 KIYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK-QHGVIAASAGNHAQGVA 84 (403)
T ss_pred HHHHHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc-CCEEEEECccHHHHHHH
Confidence 34567889999999999999999987778999999999999999999999999998876543 345443 99999999
Q ss_pred HH-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 80 LI-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 80 ~~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
++ +.+|++|+||||+++|+.|+++++
T Consensus 85 ~aa~~~Gi~~~IvmP~~~p~~k~~~~r 111 (403)
T PRK08526 85 ISAKKFGIKAVIVMPEATPLLKVSGTK 111 (403)
T ss_pred HHHHHcCCCEEEEEcCCCCHHHHHHHH
Confidence 99 999999999999999999998875
No 21
>PRK08198 threonine dehydratase; Provisional
Probab=99.94 E-value=3.3e-27 Score=185.69 Aligned_cols=101 Identities=19% Similarity=0.172 Sum_probs=89.4
Q ss_pred hhhhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-H
Q 033926 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-L 80 (108)
Q Consensus 4 ~~~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~ 80 (108)
-..++++|.+.+++|||++++++++..|++||+|+|++|||||||||+|.+++..+.+++. ..+.+. +||||+|+ +
T Consensus 9 i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~-~~~vv~aSsGN~g~alA~ 87 (404)
T PRK08198 9 IEEARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER-ARGVVAASAGNHAQGVAY 87 (404)
T ss_pred HHHHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc-CCEEEEECCCHHHHHHHH
Confidence 3457889999999999999999987778899999999999999999999999999876543 233333 99999999 9
Q ss_pred H-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 81 I-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 81 ~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
+ +.+|++|+||||+++|+.|+++++
T Consensus 88 ~a~~~G~~~~iv~p~~~~~~k~~~~~ 113 (404)
T PRK08198 88 AASLLGIKATIVMPETAPLSKVKATR 113 (404)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHH
Confidence 9 999999999999999999999875
No 22
>PRK07048 serine/threonine dehydratase; Validated
Probab=99.94 E-value=4.9e-27 Score=180.01 Aligned_cols=102 Identities=17% Similarity=0.112 Sum_probs=89.4
Q ss_pred chhhhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-
Q 033926 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK- 79 (108)
Q Consensus 3 ~~~~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al- 79 (108)
....++++|.+++++|||+++++++...|.+||+|+|++|||||||||+|++++.++.+.+. ..+++. +||||+|+
T Consensus 10 ~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~-~~~vv~aSsGN~g~alA 88 (321)
T PRK07048 10 DVAAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR-RAGVVTFSSGNHAQAIA 88 (321)
T ss_pred HHHHHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc-CCcEEEeCCCHHHHHHH
Confidence 45667899999999999999999876678899999999999999999999999998875432 233333 99999999
Q ss_pred HH-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 80 LI-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 80 ~~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
++ +.+|++++||||+++|+.|+++++
T Consensus 89 ~~a~~~G~~~~vvvp~~~~~~k~~~~~ 115 (321)
T PRK07048 89 LSARLLGIPATIVMPQDAPAAKVAATR 115 (321)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHH
Confidence 99 999999999999999999999876
No 23
>PRK08246 threonine dehydratase; Provisional
Probab=99.94 E-value=1e-26 Score=178.01 Aligned_cols=100 Identities=19% Similarity=0.149 Sum_probs=87.0
Q ss_pred chhhhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-
Q 033926 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK- 79 (108)
Q Consensus 3 ~~~~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al- 79 (108)
+...++++|.+++++|||++++.+... +.+||+|+|++|||||||||+|++++..+.+ + ..+++. +||||+|+
T Consensus 9 ~i~~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~--~~~vv~aSsGN~g~a~A 84 (310)
T PRK08246 9 DVRAAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P--AAGVVAASGGNAGLAVA 84 (310)
T ss_pred HHHHHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c--CCeEEEeCCCHHHHHHH
Confidence 456678999999999999999988765 7899999999999999999999999988765 2 122232 99999999
Q ss_pred HH-HHcCCcEEEEecCCCCHHHHhhccc
Q 033926 80 LI-NHKNYAMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 80 ~~-~~~G~~~~ivvp~~~~~~k~~~~~~ 106 (108)
++ +.+|++|+||||+.+++.|+++++-
T Consensus 85 ~~a~~~G~~~~iv~p~~~~~~k~~~~~~ 112 (310)
T PRK08246 85 YAAAALGVPATVFVPETAPPAKVARLRA 112 (310)
T ss_pred HHHHHcCCCEEEEECCCCcHHHHHHHHH
Confidence 99 9999999999999999999998763
No 24
>PRK08638 threonine dehydratase; Validated
Probab=99.94 E-value=6.1e-27 Score=181.09 Aligned_cols=102 Identities=25% Similarity=0.194 Sum_probs=89.2
Q ss_pred chhhhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-
Q 033926 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK- 79 (108)
Q Consensus 3 ~~~~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al- 79 (108)
....+++++.+.+++|||++++++++..+++||+|+|++|||||||||++.+++..+.+.... .+++. +||+|+|+
T Consensus 13 ~i~~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~~-~~vv~~SsGN~g~alA 91 (333)
T PRK08638 13 DIIEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEKR-KGVVACSAGNHAQGVA 91 (333)
T ss_pred HHHHHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhcC-CeEEEeCCcHHHHHHH
Confidence 456678999999999999999998876788999999999999999999999999987654322 33333 99999999
Q ss_pred HH-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 80 LI-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 80 ~~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
++ +.+|++|+||||+++++.|+++++
T Consensus 92 ~~aa~~G~~~~iv~p~~~~~~k~~~~~ 118 (333)
T PRK08638 92 LSCALLGIDGKVVMPKGAPKSKVAATC 118 (333)
T ss_pred HHHHHcCCCEEEEeCCCCcHHHHHHHH
Confidence 99 999999999999999999999875
No 25
>PRK08639 threonine dehydratase; Validated
Probab=99.94 E-value=3.5e-27 Score=186.95 Aligned_cols=101 Identities=21% Similarity=0.205 Sum_probs=87.9
Q ss_pred hhhhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-H
Q 033926 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-L 80 (108)
Q Consensus 4 ~~~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~ 80 (108)
...+++++.+.+++|||++++++++..|++||+|+|++|||||||||+|++++..+.+ +....+++. +||||+|+ +
T Consensus 12 i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~-~~~~~~Vv~aSsGN~g~alA~ 90 (420)
T PRK08639 12 IDKAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSD-EELAAGVVCASAGNHAQGVAY 90 (420)
T ss_pred HHHHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCH-HhhCCEEEEECccHHHHHHHH
Confidence 3456788999999999999999887778999999999999999999999999988543 223344443 99999999 9
Q ss_pred H-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 81 I-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 81 ~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
+ +.+|++|+||||+++|+.|+++++
T Consensus 91 ~a~~~G~~~~IvmP~~~~~~k~~~~r 116 (420)
T PRK08639 91 ACRHLGIPGVIFMPVTTPQQKIDQVR 116 (420)
T ss_pred HHHHcCCCEEEEECCCChHHHHHHHH
Confidence 9 999999999999999999998876
No 26
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=99.94 E-value=4.2e-27 Score=182.69 Aligned_cols=101 Identities=17% Similarity=0.140 Sum_probs=91.0
Q ss_pred hhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-HH-
Q 033926 6 EIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-LI- 81 (108)
Q Consensus 6 ~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~~- 81 (108)
.++.++.+.+.+|||++++.|++..|++||+|+|++||+||||.|||+|.+..+.+++....|++. +||||+++ |+
T Consensus 14 ~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~~~gViaaSaGNHaQGvA~aa 93 (347)
T COG1171 14 AAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAAGVIAASAGNHAQGVAYAA 93 (347)
T ss_pred HHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhhcCceEEecCCcHHHHHHHHH
Confidence 456788999999999999999988899999999999999999999999999997655445666554 99999999 99
Q ss_pred HHcCCcEEEEecCCCCHHHHhhccc
Q 033926 82 NHKNYAMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 82 ~~~G~~~~ivvp~~~~~~k~~~~~~ 106 (108)
+++|++++||||.++|+.|++.++-
T Consensus 94 ~~lGi~a~IvMP~~tp~~Kv~a~r~ 118 (347)
T COG1171 94 KRLGIKATIVMPETTPKIKVDATRG 118 (347)
T ss_pred HHhCCCEEEEecCCCcHHHHHHHHh
Confidence 9999999999999999999998763
No 27
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=99.94 E-value=1.1e-26 Score=178.29 Aligned_cols=102 Identities=20% Similarity=0.155 Sum_probs=89.0
Q ss_pred chhhhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-
Q 033926 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK- 79 (108)
Q Consensus 3 ~~~~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al- 79 (108)
+...++++|.+.+++|||++++++....|.+||+|+|++|||||||||++.+++..+.+... ..+.+. +||||+|+
T Consensus 5 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~-~~~vv~aSsGN~g~alA 83 (317)
T TIGR02991 5 DIERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR-AAGVVAASTGNHGRALA 83 (317)
T ss_pred HHHHHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc-CCeEEEECCCHHHHHHH
Confidence 45678899999999999999999887678899999999999999999999999988764321 223333 99999999
Q ss_pred HH-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 80 LI-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 80 ~~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
++ +.+|++|+||||+++|+.|+++++
T Consensus 84 ~~a~~~G~~~~v~~p~~~~~~k~~~~~ 110 (317)
T TIGR02991 84 YAAAEEGVRATICMSELVPQNKVDEIR 110 (317)
T ss_pred HHHHHhCCCEEEEcCCCCCHHHHHHHH
Confidence 99 999999999999999999999875
No 28
>PRK08813 threonine dehydratase; Provisional
Probab=99.94 E-value=3.2e-26 Score=178.40 Aligned_cols=97 Identities=16% Similarity=0.121 Sum_probs=86.0
Q ss_pred chhhhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-
Q 033926 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK- 79 (108)
Q Consensus 3 ~~~~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al- 79 (108)
+...++++|.+++++|||++++.+ +||+|+|++|||||||||+|++++..+.+.|..+ +++. +||||+|+
T Consensus 25 ~i~~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~~-~VV~aSsGN~G~alA 97 (349)
T PRK08813 25 DVLAAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGDER-PVICASAGNHAQGVA 97 (349)
T ss_pred HHHHHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCCC-eEEEECCCHHHHHHH
Confidence 345677899999999999998765 3999999999999999999999999999988653 3333 99999999
Q ss_pred HH-HHcCCcEEEEecCCCCHHHHhhccc
Q 033926 80 LI-NHKNYAMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 80 ~~-~~~G~~~~ivvp~~~~~~k~~~~~~ 106 (108)
++ +.+|++|+||||+++++.|+++++.
T Consensus 98 ~aa~~~Gi~~~IvvP~~~~~~K~~~i~~ 125 (349)
T PRK08813 98 WSAYRLGVQAITVMPHGAPQTKIAGVAH 125 (349)
T ss_pred HHHHHcCCCEEEEEcCCCCHHHHHHHHH
Confidence 99 9999999999999999999998864
No 29
>PRK02991 D-serine dehydratase; Provisional
Probab=99.93 E-value=2e-26 Score=184.04 Aligned_cols=103 Identities=14% Similarity=0.173 Sum_probs=87.4
Q ss_pred hhhhHHHHhcc----------------cCCCceeEccCccCCCC--------ceEEEEeCCCCC-CcchhhHHHHHHHHH
Q 033926 4 KCEIKKDVTEL----------------IGHTPMVYLNNVVDGCV--------AHIAAKLEMMQP-CSSVKDRIAYSMIKD 58 (108)
Q Consensus 4 ~~~~~~~i~~~----------------v~~TPLv~~~~l~~~~~--------~~i~~KlE~~np-tGS~K~R~a~~~l~~ 58 (108)
...++++|..+ +++|||++++.++...| .+||+|+|++|| |||||||||++++..
T Consensus 46 i~~A~~~i~~~~~~~~~~~~~~~~~~~~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~ 125 (441)
T PRK02991 46 VQDAEARLKRFAPYLAKAFPETAATGGIIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLK 125 (441)
T ss_pred HHHHHHHHHhhhhhhhhhCccccccCCccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHH
Confidence 34556777776 89999999998875443 699999999999 999999999999875
Q ss_pred -----HHHcCCCCCCe------------------Ee---cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhhccc
Q 033926 59 -----AEDKGLITPGK------------------VF---NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 59 -----a~~~g~~~~g~------------------~v---sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~~~~ 106 (108)
+++.|.+.++. ++ +||||+|+ ++ +.+|++|+||||+++|+.|+++++-
T Consensus 126 l~~~~a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~ 201 (441)
T PRK02991 126 HAEKLALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRS 201 (441)
T ss_pred hhHHHHHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHh
Confidence 45777665542 33 99999999 99 9999999999999999999999864
No 30
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=99.93 E-value=1.7e-26 Score=182.76 Aligned_cols=101 Identities=23% Similarity=0.250 Sum_probs=88.7
Q ss_pred hhhhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-H
Q 033926 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-L 80 (108)
Q Consensus 4 ~~~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~ 80 (108)
...+++++.+.+++|||++++++++..|.+||+|+|++|||||||||+|++++..+.+. ...++++. +||||+|+ +
T Consensus 3 i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~-~~~~gvv~aSsGN~g~a~A~ 81 (409)
T TIGR02079 3 IEAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDA-QLAKGVVCASAGNHAQGFAY 81 (409)
T ss_pred HHHHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHH-hhCCEEEEECccHHHHHHHH
Confidence 34678899999999999999999877788999999999999999999999999875432 33455444 99999999 9
Q ss_pred H-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 81 I-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 81 ~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
+ +.+|++|+||||+++|+.|+++++
T Consensus 82 ~a~~~G~~~~iv~p~~~~~~k~~~~~ 107 (409)
T TIGR02079 82 ACRHLGVHGTVFMPATTPKQKIDRVK 107 (409)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHH
Confidence 9 999999999999999999999876
No 31
>PRK07334 threonine dehydratase; Provisional
Probab=99.93 E-value=1.3e-26 Score=182.65 Aligned_cols=103 Identities=16% Similarity=0.059 Sum_probs=89.9
Q ss_pred cchhhhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH
Q 033926 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK 79 (108)
Q Consensus 2 ~~~~~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al 79 (108)
+....++++|.+++++|||+++++++...|.+||+|+|++|||||||||+|.+++..+.++.. ..+.+. +||||+|+
T Consensus 8 ~~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~-~~~vv~aSsGN~g~al 86 (403)
T PRK07334 8 ADIRAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER-ARGVIAMSAGNHAQGV 86 (403)
T ss_pred HHHHHHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh-CCcEEEECCcHHHHHH
Confidence 455678899999999999999999887678899999999999999999999999998764432 234333 99999999
Q ss_pred -HH-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 80 -LI-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 80 -~~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
++ +.+|++|+||||+++|+.|+++++
T Consensus 87 A~~a~~~G~~~~iv~p~~~~~~k~~~~~ 114 (403)
T PRK07334 87 AYHAQRLGIPATIVMPRFTPTVKVERTR 114 (403)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHH
Confidence 99 999999999999999999998876
No 32
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=99.93 E-value=2.6e-26 Score=173.61 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=92.0
Q ss_pred cchhhhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH
Q 033926 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK 79 (108)
Q Consensus 2 ~~~~~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al 79 (108)
++.+.++++|.+++|+|||++++++....|.+||+|+|++|||||||||++.+++.++.+.|. ..+.+. +||||.|+
T Consensus 2 ~~~~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~-~~~iv~~ssGN~g~al 80 (304)
T cd01562 2 EDILAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER-AKGVVAASAGNHAQGV 80 (304)
T ss_pred hHHHHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc-CCcEEEECCCHHHHHH
Confidence 456778999999999999999999887678899999999999999999999999999987762 223333 99999999
Q ss_pred -HH-HHcCCcEEEEecCCCCHHHHhhccc
Q 033926 80 -LI-NHKNYAMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 80 -~~-~~~G~~~~ivvp~~~~~~k~~~~~~ 106 (108)
++ +.+|++|++|||++++++|+++++-
T Consensus 81 A~~a~~~G~~~~ivvp~~~~~~k~~~l~~ 109 (304)
T cd01562 81 AYAAKLLGIPATIVMPETAPAAKVDATRA 109 (304)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHH
Confidence 99 9999999999999999999998763
No 33
>PRK06815 hypothetical protein; Provisional
Probab=99.93 E-value=2.3e-26 Score=176.27 Aligned_cols=104 Identities=13% Similarity=0.054 Sum_probs=90.1
Q ss_pred cchhhhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH
Q 033926 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK 79 (108)
Q Consensus 2 ~~~~~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al 79 (108)
|+...+++++.+.+++|||+++++++...|.+||+|+|++|||||||||+|.+++..+.+.. ...+.+. +||+|+|+
T Consensus 5 ~~i~~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~-~~~~vv~aSsGN~g~al 83 (317)
T PRK06815 5 DAILEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQ-RQQGVITASSGNHGQGV 83 (317)
T ss_pred HHHHHHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhh-cCceEEEECCChHHHHH
Confidence 45667889999999999999999988767889999999999999999999999998765432 2334443 99999999
Q ss_pred -HH-HHcCCcEEEEecCCCCHHHHhhccc
Q 033926 80 -LI-NHKNYAMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 80 -~~-~~~G~~~~ivvp~~~~~~k~~~~~~ 106 (108)
++ +.+|++|+||||+++++.|+++++-
T Consensus 84 A~~a~~~G~~~~i~~p~~~~~~k~~~~~~ 112 (317)
T PRK06815 84 ALAAKLAGIPVTVYAPEQASAIKLDAIRA 112 (317)
T ss_pred HHHHHHhCCCEEEEECCCCCHHHHHHHHH
Confidence 99 9999999999999999999998864
No 34
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=99.93 E-value=4.3e-26 Score=181.75 Aligned_cols=93 Identities=16% Similarity=0.185 Sum_probs=81.6
Q ss_pred ccCCCceeEccCccC--------CCCceEEEEeCCCCC-CcchhhHHHHHHHHH-----HHHcCCCCCCe----------
Q 033926 14 LIGHTPMVYLNNVVD--------GCVAHIAAKLEMMQP-CSSVKDRIAYSMIKD-----AEDKGLITPGK---------- 69 (108)
Q Consensus 14 ~v~~TPLv~~~~l~~--------~~~~~i~~KlE~~np-tGS~K~R~a~~~l~~-----a~~~g~~~~g~---------- 69 (108)
.+++|||++++++++ ..+.+||+|+|++|| |||||||+|.++|.. +++.|.+.++.
T Consensus 67 ~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~ 146 (431)
T TIGR02035 67 GIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKF 146 (431)
T ss_pred CccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhh
Confidence 789999999998875 235799999999999 999999999998864 67888766542
Q ss_pred --------Ee---cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhhccc
Q 033926 70 --------VF---NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 70 --------~v---sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~~~~ 106 (108)
++ |||||+|+ ++ +.+|++|+||||+++|+.|+++++-
T Consensus 147 ~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~ 196 (431)
T TIGR02035 147 KDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRS 196 (431)
T ss_pred hhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH
Confidence 22 99999999 99 9999999999999999999999863
No 35
>PRK12483 threonine dehydratase; Reviewed
Probab=99.93 E-value=9.2e-26 Score=183.29 Aligned_cols=96 Identities=19% Similarity=0.139 Sum_probs=85.7
Q ss_pred HHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-HH-HHc
Q 033926 9 KDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-LI-NHK 84 (108)
Q Consensus 9 ~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~~-~~~ 84 (108)
.+|.+.+++|||++++++++..|++||+|+|++|||||||+|||++++..+.+.. ...|++. +||||+|+ ++ +.+
T Consensus 29 ~~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~-~~~GVV~aSaGNha~gvA~aA~~l 107 (521)
T PRK12483 29 ARVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQ-LARGVITASAGNHAQGVALAAARL 107 (521)
T ss_pred HHHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHH-hcCcEEEECCCHHHHHHHHHHHHh
Confidence 4678899999999999998888899999999999999999999999998776432 3456554 99999999 99 999
Q ss_pred CCcEEEEecCCCCHHHHhhcc
Q 033926 85 NYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 85 G~~~~ivvp~~~~~~k~~~~~ 105 (108)
|++|+||||+++|+.|+++++
T Consensus 108 Gi~~~IvmP~~tp~~Kv~~~r 128 (521)
T PRK12483 108 GVKAVIVMPRTTPQLKVDGVR 128 (521)
T ss_pred CCCEEEEECCCCCHHHHHHHH
Confidence 999999999999999999876
No 36
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=99.93 E-value=1.8e-25 Score=168.94 Aligned_cols=91 Identities=40% Similarity=0.570 Sum_probs=83.0
Q ss_pred CCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe----cchHHHHH-HH-HHcCCcEE
Q 033926 16 GHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF----NGNSPILK-LI-NHKNYAMN 89 (108)
Q Consensus 16 ~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v----sGN~g~al-~~-~~~G~~~~ 89 (108)
|+|||++++++....|.+||+|+|++|||||||+|++.+++..+.++|..++|.++ +||||.|+ ++ +.+|++|+
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ 80 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAKGYRFI 80 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCeEE
Confidence 68999999999877788999999999999999999999999999999876555332 99999999 99 99999999
Q ss_pred EEecCCCCHHHHhhccc
Q 033926 90 SVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 90 ivvp~~~~~~k~~~~~~ 106 (108)
||||.++++.|+++++-
T Consensus 81 i~vp~~~~~~k~~~~~~ 97 (291)
T cd01561 81 IVMPETMSEEKRKLLRA 97 (291)
T ss_pred EEECCCCCHHHHHHHHH
Confidence 99999999999998863
No 37
>PRK06381 threonine synthase; Validated
Probab=99.93 E-value=1.3e-25 Score=171.69 Aligned_cols=94 Identities=19% Similarity=0.153 Sum_probs=83.4
Q ss_pred HhcccCCCceeEccCccCCCC-ceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-HH-HHcC
Q 033926 11 VTELIGHTPMVYLNNVVDGCV-AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-LI-NHKN 85 (108)
Q Consensus 11 i~~~v~~TPLv~~~~l~~~~~-~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~~-~~~G 85 (108)
-...+|+|||++++++....| .+||+|+|++|||||||||++.+++..|.++|.. ..+. +||||+|+ ++ +.+|
T Consensus 9 ~~~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~--~lv~aSsGN~g~alA~~aa~~G 86 (319)
T PRK06381 9 EEKPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGYS--GITVGTCGNYGASIAYFARLYG 86 (319)
T ss_pred ccccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCCC--EEEEeCCcHHHHHHHHHHHHcC
Confidence 345799999999999987677 6999999999999999999999999999998842 2232 99999999 99 9999
Q ss_pred CcEEEEecCCCCHHHHhhccc
Q 033926 86 YAMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 86 ~~~~ivvp~~~~~~k~~~~~~ 106 (108)
++|+||||+.+++.|+++++-
T Consensus 87 ~~~~ivvp~~~~~~~~~~l~~ 107 (319)
T PRK06381 87 LKAVIFIPRSYSNSRVKEMEK 107 (319)
T ss_pred CcEEEEECCCCCHHHHHHHHH
Confidence 999999999999999998763
No 38
>PLN02550 threonine dehydratase
Probab=99.92 E-value=2.2e-25 Score=182.96 Aligned_cols=95 Identities=17% Similarity=0.179 Sum_probs=85.8
Q ss_pred HHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-HH-HHcC
Q 033926 10 DVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-LI-NHKN 85 (108)
Q Consensus 10 ~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~~-~~~G 85 (108)
++.+.+++|||+++++++...|++||+|+|++|||||||+|+|++++..+.++ ...+|++. +||||+++ ++ +.+|
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e-~~~~GVV~aSaGNhAqgvA~aA~~lG 180 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKE-QLDKGVICSSAGNHAQGVALSAQRLG 180 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHh-cCCCCEEEECCCHHHHHHHHHHHHcC
Confidence 56689999999999999888889999999999999999999999999988654 35667554 99999999 99 9999
Q ss_pred CcEEEEecCCCCHHHHhhcc
Q 033926 86 YAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 86 ~~~~ivvp~~~~~~k~~~~~ 105 (108)
++|+||||+++|..|+++++
T Consensus 181 ika~IvmP~~tp~~Kv~~~r 200 (591)
T PLN02550 181 CDAVIAMPVTTPEIKWQSVE 200 (591)
T ss_pred CCEEEEECCCCCHHHHHHHH
Confidence 99999999999999998875
No 39
>PRK07409 threonine synthase; Validated
Probab=99.92 E-value=3.1e-25 Score=172.14 Aligned_cols=93 Identities=20% Similarity=0.217 Sum_probs=81.7
Q ss_pred HhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-HH-HHcCC
Q 033926 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-LI-NHKNY 86 (108)
Q Consensus 11 i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~~-~~~G~ 86 (108)
+.-.+|+|||+++++++...|.+||+|+|++|||||||||+|.+++..+.++|.. +.+. |||||+|+ ++ +.+|+
T Consensus 25 ~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~--~iv~aSsGN~g~alA~~a~~~G~ 102 (353)
T PRK07409 25 VTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGAK--AVICASTGNTSASAAAYAARAGL 102 (353)
T ss_pred ccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCCC--EEEEECCcHHHHHHHHHHHHcCC
Confidence 3446899999999998776678999999999999999999999999999988742 2222 99999999 99 99999
Q ss_pred cEEEEecCC-CCHHHHhhcc
Q 033926 87 AMNSVFLFS-VNVNNFNQAH 105 (108)
Q Consensus 87 ~~~ivvp~~-~~~~k~~~~~ 105 (108)
+|+||||++ +++.|+++++
T Consensus 103 ~~~ivvP~~~~~~~k~~~~~ 122 (353)
T PRK07409 103 KAFVLIPEGKIALGKLAQAV 122 (353)
T ss_pred CEEEEEcCCCCchhhHHHHH
Confidence 999999998 6899998875
No 40
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=99.92 E-value=9.7e-26 Score=171.46 Aligned_cols=99 Identities=27% Similarity=0.398 Sum_probs=92.8
Q ss_pred hHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe----cchHHHHH-HH
Q 033926 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF----NGNSPILK-LI 81 (108)
Q Consensus 7 ~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v----sGN~g~al-~~ 81 (108)
+.+-+.+.||+||||+++.|++..|++|++|+|++||.||.|||.|+++|+.|+|.|++-+|.+| +||+|+++ ..
T Consensus 39 ~~~Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~v~EGtaGsTgIslA~v 118 (391)
T KOG1481|consen 39 IVSGVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGTVVEGTAGSTGISLAHV 118 (391)
T ss_pred ccchhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCceEEecCCCccchhHHHh
Confidence 34567789999999999999999999999999999999999999999999999999999988776 99999999 88
Q ss_pred -HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 82 -NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 82 -~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
..+|++|+|+||++.+.+|.+.++
T Consensus 119 ~~a~Gyk~~I~mPddqs~eK~~ile 143 (391)
T KOG1481|consen 119 ARALGYKCHIYMPDDQSQEKSDILE 143 (391)
T ss_pred hhhcCcceEEECCChHHHHHHHHHH
Confidence 999999999999999999998765
No 41
>PRK06352 threonine synthase; Validated
Probab=99.92 E-value=3.8e-25 Score=171.95 Aligned_cols=92 Identities=23% Similarity=0.282 Sum_probs=81.8
Q ss_pred HhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe---cchHHHHH-HH-HHcC
Q 033926 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF---NGNSPILK-LI-NHKN 85 (108)
Q Consensus 11 i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v---sGN~g~al-~~-~~~G 85 (108)
+.-.+|+|||++++++....+.+||+|+|++|||||||||+|.+++.++.++|. . .++ +||||+|+ ++ +.+|
T Consensus 22 ~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~--~-~vV~aSsGN~G~AlA~~aa~~G 98 (351)
T PRK06352 22 ISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA--E-AVICASTGNTSAAAAAYATRAG 98 (351)
T ss_pred cccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC--C-EEEEECCcHHHHHHHHHHHHcC
Confidence 444689999999999877677899999999999999999999999999999884 2 333 99999999 99 9999
Q ss_pred CcEEEEecCC-CCHHHHhhcc
Q 033926 86 YAMNSVFLFS-VNVNNFNQAH 105 (108)
Q Consensus 86 ~~~~ivvp~~-~~~~k~~~~~ 105 (108)
++|+||||++ .+++|+++++
T Consensus 99 ~~~~ivvp~~~~~~~k~~~~~ 119 (351)
T PRK06352 99 LKAYIVIPEGKVALGKLAQAV 119 (351)
T ss_pred CcEEEEEeCCCCcHHHHHHHH
Confidence 9999999998 5999999875
No 42
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=99.92 E-value=2.4e-25 Score=173.90 Aligned_cols=88 Identities=22% Similarity=0.164 Sum_probs=79.8
Q ss_pred CceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-HH-HHcCCcEEEEec
Q 033926 18 TPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 18 TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
|||++++++++..|++||+|+|++|||||||||+|++++..+.++|.. .+++. +||||+|+ ++ +.+|++|+||||
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p 79 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQ-RGVVAASAGNHAQGVAYAAKKFGIKAVIVMP 79 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccC-CEEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 899999999887789999999999999999999999999999888754 34333 99999999 99 999999999999
Q ss_pred CCCCHHHHhhccc
Q 033926 94 FSVNVNNFNQAHP 106 (108)
Q Consensus 94 ~~~~~~k~~~~~~ 106 (108)
+++|++|+++++-
T Consensus 80 ~~~~~~k~~~~~~ 92 (380)
T TIGR01127 80 ESAPPSKVKATKS 92 (380)
T ss_pred CCCcHHHHHHHHH
Confidence 9999999998863
No 43
>PRK06721 threonine synthase; Reviewed
Probab=99.92 E-value=5.7e-25 Score=170.95 Aligned_cols=92 Identities=22% Similarity=0.220 Sum_probs=81.8
Q ss_pred HhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe---cchHHHHH-HH-HHcC
Q 033926 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF---NGNSPILK-LI-NHKN 85 (108)
Q Consensus 11 i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v---sGN~g~al-~~-~~~G 85 (108)
+...+|+|||++++++++..|.+||+|+|++|||||||||+|.+++..+.++|.. .++ +||||+|+ ++ +.+|
T Consensus 22 ~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~~---~vV~aSsGN~G~alA~~aa~~G 98 (352)
T PRK06721 22 VSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGSE---AIICASTGNTSASAAAYAARLG 98 (352)
T ss_pred cccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCCC---EEEEECCcHHHHHHHHHHHHCC
Confidence 4556899999999998776778999999999999999999999999999998842 333 99999999 99 9999
Q ss_pred CcEEEEecCCC-CHHHHhhcc
Q 033926 86 YAMNSVFLFSV-NVNNFNQAH 105 (108)
Q Consensus 86 ~~~~ivvp~~~-~~~k~~~~~ 105 (108)
++|+||||++. ++.|+++++
T Consensus 99 ~~~~vvvp~~~~~~~k~~~~~ 119 (352)
T PRK06721 99 MKCIIVIPEGKIAHGKLAQAV 119 (352)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 99999999974 889998875
No 44
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=99.92 E-value=6.5e-25 Score=167.89 Aligned_cols=94 Identities=19% Similarity=0.151 Sum_probs=82.9
Q ss_pred HHhcccCCCceeEccCccCCCC-ceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-HH-HHc
Q 033926 10 DVTELIGHTPMVYLNNVVDGCV-AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-LI-NHK 84 (108)
Q Consensus 10 ~i~~~v~~TPLv~~~~l~~~~~-~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~~-~~~ 84 (108)
.|.-.+|+|||+++++++...+ .+||+|+|++|||||||||+|.+++..+.++|.. +.+. +||||+|+ ++ +.+
T Consensus 15 ~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~--~vv~~SsGN~g~alA~~a~~~ 92 (324)
T cd01563 15 IVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGVK--AVACASTGNTSASLAAYAARA 92 (324)
T ss_pred cccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCCC--EEEEeCCCHHHHHHHHHHHHc
Confidence 4666899999999999876555 7999999999999999999999999999988732 2222 99999999 99 999
Q ss_pred CCcEEEEecCCCCHHHHhhcc
Q 033926 85 NYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 85 G~~~~ivvp~~~~~~k~~~~~ 105 (108)
|++|+||||+++|+.|+++++
T Consensus 93 G~~~~ivvp~~~~~~k~~~l~ 113 (324)
T cd01563 93 GIKCVVFLPAGKALGKLAQAL 113 (324)
T ss_pred CCceEEEEeCCCCHHHHHHHH
Confidence 999999999999999999876
No 45
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=99.91 E-value=8.6e-25 Score=167.84 Aligned_cols=88 Identities=19% Similarity=0.200 Sum_probs=79.3
Q ss_pred CCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCe-Ee---cchHHHHH-HH-HHcCCcEEE
Q 033926 17 HTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK-VF---NGNSPILK-LI-NHKNYAMNS 90 (108)
Q Consensus 17 ~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~-~v---sGN~g~al-~~-~~~G~~~~i 90 (108)
+|||++++++....+.+||+|+|++||+||||||++.+++..+.++|. .++. ++ +||||+|+ ++ +.+|++|+|
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~~~~vv~aSsGN~g~alA~~a~~~G~~~~i 79 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NECVHVVCSSGGNAGLAAAYAARKLGVPCTI 79 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-ccCCeEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 699999999887668899999999999999999999999999999885 2222 33 99999999 99 999999999
Q ss_pred EecCCCCHHHHhhcc
Q 033926 91 VFLFSVNVNNFNQAH 105 (108)
Q Consensus 91 vvp~~~~~~k~~~~~ 105 (108)
|||+.+++.|+++++
T Consensus 80 v~p~~~~~~k~~~l~ 94 (316)
T cd06448 80 VVPESTKPRVVEKLR 94 (316)
T ss_pred EECCCCCHHHHHHHH
Confidence 999999999999886
No 46
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=99.91 E-value=3.1e-25 Score=166.07 Aligned_cols=104 Identities=17% Similarity=0.162 Sum_probs=92.8
Q ss_pred CcchhhhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHH
Q 033926 1 MEDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPIL 78 (108)
Q Consensus 1 ~~~~~~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~a 78 (108)
|++...++++|.+++..||++.++.+.+..|.++|+|||++|.+||||.|||.|.+..+.++. ..+|++. |||||+|
T Consensus 9 ~~dv~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek-~~kgvithSSGNHaqA 87 (323)
T KOG1251|consen 9 YEDVRAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEK-RAKGVITHSSGNHAQA 87 (323)
T ss_pred HHHHHHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhh-hcCceEeecCCcHHHH
Confidence 355677899999999999999999999888999999999999999999999999999887432 3456654 9999999
Q ss_pred H-HH-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 79 K-LI-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 79 l-~~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
+ |+ +..|++++||||.++|..|++.++
T Consensus 88 lalaAk~~giPa~IVvP~~AP~~Kv~a~~ 116 (323)
T KOG1251|consen 88 LALAAKILGIPATIVVPKDAPICKVAATR 116 (323)
T ss_pred HHHHHHhcCCCeEEEecCCChHHHHHHHH
Confidence 9 99 999999999999999999998765
No 47
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=99.91 E-value=1e-24 Score=176.49 Aligned_cols=97 Identities=19% Similarity=0.103 Sum_probs=85.3
Q ss_pred HHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-HH-HHc
Q 033926 9 KDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-LI-NHK 84 (108)
Q Consensus 9 ~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~~-~~~ 84 (108)
.++.+.+++|||+++++++...|++||+|+|++||+||||+|+|++++..+.++. ...|++. +||||+|+ ++ +.+
T Consensus 9 ~~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~-~~~gVV~aSaGNha~~vA~aa~~~ 87 (499)
T TIGR01124 9 ARVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQ-KARGVIAASAGNHAQGVAFSAARL 87 (499)
T ss_pred hHhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHh-cCCEEEEECCCHHHHHHHHHHHHc
Confidence 4788999999999999998878899999999999999999999999998874432 2345443 99999999 99 999
Q ss_pred CCcEEEEecCCCCHHHHhhccc
Q 033926 85 NYAMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 85 G~~~~ivvp~~~~~~k~~~~~~ 106 (108)
|++|+||||+++|+.|+++++-
T Consensus 88 Gi~~~IvmP~~tp~~Kv~~~r~ 109 (499)
T TIGR01124 88 GLKALIVMPETTPDIKVDAVRG 109 (499)
T ss_pred CCCEEEEECCCCCHHHHHHHHh
Confidence 9999999999999999998763
No 48
>PRK06450 threonine synthase; Validated
Probab=99.91 E-value=1.3e-24 Score=168.56 Aligned_cols=86 Identities=20% Similarity=0.224 Sum_probs=75.8
Q ss_pred HhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-HH-HHcCC
Q 033926 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-LI-NHKNY 86 (108)
Q Consensus 11 i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~~-~~~G~ 86 (108)
+.-..|+|||++.. +||+|+|++|||||||||++.+++..|.+.|.. .++. |||+|+|+ ++ +.+|+
T Consensus 52 vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~~--~vv~aSsGN~g~slA~~aa~~G~ 121 (338)
T PRK06450 52 ISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGIK--QISEDSSGNAGASIAAYGAAAGI 121 (338)
T ss_pred CCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCC--EEEEECCcHHHHHHHHHHHHcCC
Confidence 44578999999863 599999999999999999999999999998742 2333 99999999 88 99999
Q ss_pred cEEEEecCCCCHHHHhhccc
Q 033926 87 AMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 87 ~~~ivvp~~~~~~k~~~~~~ 106 (108)
+++||||+++|+.|+++++-
T Consensus 122 ~~~i~vP~~~~~~k~~~i~~ 141 (338)
T PRK06450 122 EVKIFVPETASGGKLKQIES 141 (338)
T ss_pred CEEEEEcCCCCHHHHHHHHH
Confidence 99999999999999999863
No 49
>PRK08197 threonine synthase; Validated
Probab=99.91 E-value=1.4e-24 Score=170.82 Aligned_cols=94 Identities=17% Similarity=0.068 Sum_probs=82.1
Q ss_pred HhcccCCCceeEccCccCCCC-ceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-HH-HHcC
Q 033926 11 VTELIGHTPMVYLNNVVDGCV-AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-LI-NHKN 85 (108)
Q Consensus 11 i~~~v~~TPLv~~~~l~~~~~-~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~~-~~~G 85 (108)
+.-..|+|||++++++.+..| .+||+|+|++|||||||||++.+++..|.+.|.. .++. +||+|+|+ ++ +.+|
T Consensus 73 vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~--~vv~aSsGN~g~alA~~aa~~G 150 (394)
T PRK08197 73 VSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGVK--HLAMPTNGNAGAAWAAYAARAG 150 (394)
T ss_pred CccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCCC--EEEEeCCcHHHHHHHHHHHHcC
Confidence 334578999999998877666 5999999999999999999999999999988742 2332 99999999 99 9999
Q ss_pred CcEEEEecCCCCHHHHhhccc
Q 033926 86 YAMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 86 ~~~~ivvp~~~~~~k~~~~~~ 106 (108)
++|+||||+++++.|+++++-
T Consensus 151 ~~~~v~vp~~~~~~k~~~~~~ 171 (394)
T PRK08197 151 IRATIFMPADAPEITRLECAL 171 (394)
T ss_pred CcEEEEEcCCCCHHHHHHHHH
Confidence 999999999999999998863
No 50
>PRK09224 threonine dehydratase; Reviewed
Probab=99.91 E-value=2.3e-24 Score=174.51 Aligned_cols=96 Identities=18% Similarity=0.150 Sum_probs=85.0
Q ss_pred HHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-HH-HHc
Q 033926 9 KDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-LI-NHK 84 (108)
Q Consensus 9 ~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~~-~~~ 84 (108)
.++.+.+++|||+++++++...|.+||+|+|++|||||||+|+|++++..+.+.. ...|++. +||||+|+ ++ +.+
T Consensus 12 ~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~-~~~gvV~aSaGNha~avA~aa~~l 90 (504)
T PRK09224 12 ARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQ-LARGVITASAGNHAQGVALSAARL 90 (504)
T ss_pred HHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHh-cCCEEEEECcCHHHHHHHHHHHHc
Confidence 4788999999999999998878899999999999999999999999998876432 2345443 99999999 99 999
Q ss_pred CCcEEEEecCCCCHHHHhhcc
Q 033926 85 NYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 85 G~~~~ivvp~~~~~~k~~~~~ 105 (108)
|++|+||||+++|+.|+++++
T Consensus 91 Gi~~~IvmP~~tp~~K~~~~r 111 (504)
T PRK09224 91 GIKAVIVMPVTTPDIKVDAVR 111 (504)
T ss_pred CCCEEEEECCCCCHHHHHHHH
Confidence 999999999999999998875
No 51
>PRK07591 threonine synthase; Validated
Probab=99.91 E-value=2.4e-24 Score=171.02 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=82.2
Q ss_pred hcccCCCceeEccCccCCCC-ceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-HH-HHcCC
Q 033926 12 TELIGHTPMVYLNNVVDGCV-AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-LI-NHKNY 86 (108)
Q Consensus 12 ~~~v~~TPLv~~~~l~~~~~-~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~~-~~~G~ 86 (108)
.-..|+|||++++++.+..| .+||+|+|++|||||||||++.+++..|.+.|.. +++. +||||+|+ ++ +.+|+
T Consensus 84 ~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~~--~vv~aSsGN~g~alA~~aa~~Gl 161 (421)
T PRK07591 84 DLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGFT--TVACASTGNLANSVAAHAARAGL 161 (421)
T ss_pred cCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCCC--EEEEeCCCHHHHHHHHHHHHcCC
Confidence 33578999999999887777 5899999999999999999999999999998842 2333 99999999 88 99999
Q ss_pred cEEEEecCCCCHHHHhhccc
Q 033926 87 AMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 87 ~~~ivvp~~~~~~k~~~~~~ 106 (108)
+|+||||+++++.|+++++.
T Consensus 162 ~~~I~vP~~~~~~k~~~~~~ 181 (421)
T PRK07591 162 DSCVFIPADLEAGKIVGTLV 181 (421)
T ss_pred CEEEEEcCCCCHHHHHHHHH
Confidence 99999999999999998863
No 52
>PRK05638 threonine synthase; Validated
Probab=99.91 E-value=3.9e-24 Score=170.42 Aligned_cols=93 Identities=17% Similarity=0.145 Sum_probs=80.3
Q ss_pred HhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-HH-HHcCC
Q 033926 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-LI-NHKNY 86 (108)
Q Consensus 11 i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~~-~~~G~ 86 (108)
+...+|+|||++++ +....|.+||+|+|++|||||||||+|.+++..|.+.|.. .++. +||+|+|+ ++ +.+|+
T Consensus 60 v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~~--~vv~aSsGN~g~alA~~aa~~G~ 136 (442)
T PRK05638 60 ISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAAN--GFIVASDGNAAASVAAYSARAGK 136 (442)
T ss_pred cccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCCC--EEEEeCCChHHHHHHHHHHHcCC
Confidence 34468999999984 5555677999999999999999999999999999988642 2333 99999999 88 99999
Q ss_pred cEEEEecCCCCHHHHhhccc
Q 033926 87 AMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 87 ~~~ivvp~~~~~~k~~~~~~ 106 (108)
+|+||||+++|+.|+++++-
T Consensus 137 ~~~i~vp~~~~~~k~~~~~~ 156 (442)
T PRK05638 137 EAFVVVPRKVDKGKLIQMIA 156 (442)
T ss_pred CEEEEEeCCCCHHHHHHHHh
Confidence 99999999999999998863
No 53
>PRK06260 threonine synthase; Validated
Probab=99.90 E-value=4e-24 Score=168.36 Aligned_cols=93 Identities=20% Similarity=0.149 Sum_probs=81.6
Q ss_pred HhcccCCCceeEccCccCCCCc-eEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-HH-HHcC
Q 033926 11 VTELIGHTPMVYLNNVVDGCVA-HIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-LI-NHKN 85 (108)
Q Consensus 11 i~~~v~~TPLv~~~~l~~~~~~-~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~~-~~~G 85 (108)
+...+|+|||++++++....|. +||+|+|++|||||||||++.+++..+.+.|.. ..+. +||+|+|+ ++ +.+|
T Consensus 61 v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~~--~vv~aSsGN~g~alA~~aa~~G 138 (397)
T PRK06260 61 VSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGVK--TVACASTGNTSASLAAYAARAG 138 (397)
T ss_pred ccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCCC--EEEEeCCcHHHHHHHHHHHHcC
Confidence 4456899999999998766676 899999999999999999999999999998842 2232 99999999 88 9999
Q ss_pred CcEEEEecCC-CCHHHHhhcc
Q 033926 86 YAMNSVFLFS-VNVNNFNQAH 105 (108)
Q Consensus 86 ~~~~ivvp~~-~~~~k~~~~~ 105 (108)
++++||||++ +++.|+.+++
T Consensus 139 ~~~~i~vP~~~~~~~k~~~~~ 159 (397)
T PRK06260 139 LKCYVLLPAGKVALGKLAQAL 159 (397)
T ss_pred CcEEEEEeCCCccHHHHHHHH
Confidence 9999999997 8999999875
No 54
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=99.90 E-value=7.3e-24 Score=162.36 Aligned_cols=93 Identities=17% Similarity=0.120 Sum_probs=81.6
Q ss_pred HhcccCCCceeEccCccCCCCc-eEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-HH-HHcC
Q 033926 11 VTELIGHTPMVYLNNVVDGCVA-HIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-LI-NHKN 85 (108)
Q Consensus 11 i~~~v~~TPLv~~~~l~~~~~~-~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~~-~~~G 85 (108)
+.-.+++|||++++++....+. +||+|+|++|||||||||++.+++..+.+.|.. +++. +||||+|+ ++ +.+|
T Consensus 17 ~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~--~vv~aSsGN~g~a~A~~a~~~g 94 (328)
T TIGR00260 17 VDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGND--TVLCASTGNTGAAAAAYAGKAG 94 (328)
T ss_pred hhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCCC--EEEEeCCcHHHHHHHHHhccCC
Confidence 4445799999999988766676 999999999999999999999999999988743 2333 99999999 99 9999
Q ss_pred CcEEEEecCC-CCHHHHhhcc
Q 033926 86 YAMNSVFLFS-VNVNNFNQAH 105 (108)
Q Consensus 86 ~~~~ivvp~~-~~~~k~~~~~ 105 (108)
++|+||||++ ++++|+++++
T Consensus 95 ~~~~v~~p~~~~s~~k~~~~~ 115 (328)
T TIGR00260 95 VKVVILYPAGKISLGKLAQAL 115 (328)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 9999999998 9999998875
No 55
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=99.89 E-value=1.5e-23 Score=165.58 Aligned_cols=101 Identities=12% Similarity=-0.048 Sum_probs=83.3
Q ss_pred hhhHHHH--hcccCCCceeEccCccCCCC-ceEEEEeCCCC-CCcchhhHHHHHHHHHHHH--cCCC-------------
Q 033926 5 CEIKKDV--TELIGHTPMVYLNNVVDGCV-AHIAAKLEMMQ-PCSSVKDRIAYSMIKDAED--KGLI------------- 65 (108)
Q Consensus 5 ~~~~~~i--~~~v~~TPLv~~~~l~~~~~-~~i~~KlE~~n-ptGS~K~R~a~~~l~~a~~--~g~~------------- 65 (108)
..+++++ ...+++|||++++++++..| .+||+|+|++| |||||||||+.+.+..+.. .+..
T Consensus 30 ~~a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~ 109 (399)
T PRK08206 30 KKARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGE 109 (399)
T ss_pred HHHHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhH
Confidence 4456777 55889999999999987778 69999999984 9999999999998887763 2210
Q ss_pred -C---CCe-Ee---cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 66 -T---PGK-VF---NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 66 -~---~g~-~v---sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
. ++. ++ +||||+|+ ++ +.+|++|+||||+++++.|+++++
T Consensus 110 ~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~ 159 (399)
T PRK08206 110 VREKLGDITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIR 159 (399)
T ss_pred HHHhccCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHH
Confidence 0 122 33 99999999 99 999999999999999999999875
No 56
>PLN02569 threonine synthase
Probab=99.89 E-value=2.4e-23 Score=168.01 Aligned_cols=95 Identities=11% Similarity=0.061 Sum_probs=80.7
Q ss_pred HhcccCCCceeEccCccCC-CC-ceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCC-CCe-Ee---cchHHHHH-HH-
Q 033926 11 VTELIGHTPMVYLNNVVDG-CV-AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT-PGK-VF---NGNSPILK-LI- 81 (108)
Q Consensus 11 i~~~v~~TPLv~~~~l~~~-~~-~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~-~g~-~v---sGN~g~al-~~- 81 (108)
+.-..|+|||++++++.+. .| .+||+|+|++|||||||||++.+++..+.+.|... ++. ++ |||+|+|+ ++
T Consensus 127 vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAaya 206 (484)
T PLN02569 127 VSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYC 206 (484)
T ss_pred eecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHH
Confidence 3445699999999998766 66 48999999999999999999999999998876532 112 22 99999999 88
Q ss_pred HHcCCcEEEEecCC-CCHHHHhhcc
Q 033926 82 NHKNYAMNSVFLFS-VNVNNFNQAH 105 (108)
Q Consensus 82 ~~~G~~~~ivvp~~-~~~~k~~~~~ 105 (108)
+.+|++|+||||++ +++.|+++++
T Consensus 207 a~~Gl~~~I~vP~~~~~~~k~~qi~ 231 (484)
T PLN02569 207 AAAGIPSIVFLPADKISIAQLVQPI 231 (484)
T ss_pred HhcCCeEEEEEcCCCCCHHHHHHHH
Confidence 99999999999996 8889999886
No 57
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=99.89 E-value=2.2e-23 Score=156.66 Aligned_cols=94 Identities=28% Similarity=0.241 Sum_probs=80.1
Q ss_pred HhcccCCCceeEcc--CccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-HH-HHc
Q 033926 11 VTELIGHTPMVYLN--NVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-LI-NHK 84 (108)
Q Consensus 11 i~~~v~~TPLv~~~--~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~~-~~~ 84 (108)
|...+++|||++++ .+....+.+||+|+|++|||||||||++.+++..+.++|.. +++. +||||.|+ ++ +.+
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~~--~vv~assGN~g~a~A~~a~~~ 78 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGGR--TVVGASSGNHGRALAYAAARL 78 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTTS--EEEEESSSHHHHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhccccccc--eeeeeccCCceehhhhhhhhc
Confidence 56789999999975 44455688999999999999999999999999999887543 2222 99999999 99 999
Q ss_pred CCcEEEEecCCCCHHHHhhccc
Q 033926 85 NYAMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 85 G~~~~ivvp~~~~~~k~~~~~~ 106 (108)
|++|++|+|+++++.|+++++-
T Consensus 79 g~~~~i~~p~~~~~~~~~~~~~ 100 (306)
T PF00291_consen 79 GLKCTIVVPEDVSPEKLKQMRA 100 (306)
T ss_dssp TCEEEEEEETTSHHHHHHHHHH
T ss_pred cccceeeeccccccccccceee
Confidence 9999999999999999988763
No 58
>PRK08329 threonine synthase; Validated
Probab=99.89 E-value=3.7e-23 Score=160.52 Aligned_cols=84 Identities=20% Similarity=0.289 Sum_probs=74.4
Q ss_pred ccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-HH-HHcCCcEE
Q 033926 14 LIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-LI-NHKNYAMN 89 (108)
Q Consensus 14 ~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~~-~~~G~~~~ 89 (108)
..|.|||+++. .+||+|+|++|||||||||+|.+++..|.+.|.. .++. +||+|+|+ ++ +.+|++|+
T Consensus 61 ~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~--~vv~aSsGN~g~alA~~aa~~G~~~~ 131 (347)
T PRK08329 61 TPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGIN--EVVIDSSGNAALSLALYSLSEGIKVH 131 (347)
T ss_pred CCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCCC--EEEEECCCcHHHHHHHHHHHcCCcEE
Confidence 45889999872 4899999999999999999999999999998852 2333 99999999 99 99999999
Q ss_pred EEecCCCCHHHHhhccc
Q 033926 90 SVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 90 ivvp~~~~~~k~~~~~~ 106 (108)
||||+++++.|+++++.
T Consensus 132 v~vp~~~~~~k~~~~~~ 148 (347)
T PRK08329 132 VFVSYNASKEKISLLSR 148 (347)
T ss_pred EEECCCChHHHHHHHHH
Confidence 99999999999998864
No 59
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=99.89 E-value=8.4e-23 Score=150.47 Aligned_cols=89 Identities=28% Similarity=0.328 Sum_probs=79.0
Q ss_pred CceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe---cchHHHHH-HH-HHcCCcEEEEe
Q 033926 18 TPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF---NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 18 TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v---sGN~g~al-~~-~~~G~~~~ivv 92 (108)
|||++++++....+.+||+|+|++|||||||||++.+++..+.+.|.+....++ |||+|.|+ ++ +.+|+++++|+
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~ 80 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTGGNTGIALAAAAARLGLKCTIVM 80 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEE
Confidence 899999998876678999999999999999999999999999998865222333 89999999 99 99999999999
Q ss_pred cCCCCHHHHhhccc
Q 033926 93 LFSVNVNNFNQAHP 106 (108)
Q Consensus 93 p~~~~~~k~~~~~~ 106 (108)
|...++.|+++++-
T Consensus 81 p~~~~~~~~~~~~~ 94 (244)
T cd00640 81 PEGASPEKVAQMRA 94 (244)
T ss_pred CCCCCHHHHHHHHH
Confidence 99999999998763
No 60
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=99.88 E-value=2.5e-22 Score=159.67 Aligned_cols=91 Identities=19% Similarity=0.054 Sum_probs=77.8
Q ss_pred cccC-CCceeEccCccCCCC--ceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe---cchHHHHH-HH-HHc
Q 033926 13 ELIG-HTPMVYLNNVVDGCV--AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF---NGNSPILK-LI-NHK 84 (108)
Q Consensus 13 ~~v~-~TPLv~~~~l~~~~~--~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v---sGN~g~al-~~-~~~ 84 (108)
..++ +|||++++++++..+ ++||+|+|++|||||||||+|.+++..+.++|.. +.++ +||+|+|+ ++ +.+
T Consensus 63 ~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~~--~~vtetssGN~G~alA~aaa~~ 140 (419)
T TIGR01415 63 AQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGAK--RLVTETGAGQWGSALSLAGALF 140 (419)
T ss_pred HhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCCC--eEEEecCchHHHHHHHHHHHHc
Confidence 4564 799999999987655 7999999999999999999999999999999854 3343 89999999 99 999
Q ss_pred CCcEEEEecCCC---CHHHHhhcc
Q 033926 85 NYAMNSVFLFSV---NVNNFNQAH 105 (108)
Q Consensus 85 G~~~~ivvp~~~---~~~k~~~~~ 105 (108)
|++|+||||... ++.|+.+|+
T Consensus 141 Gl~~~V~mp~~s~~~k~~k~~~m~ 164 (419)
T TIGR01415 141 GLECKVFMVRVSFNQKPYRKYLME 164 (419)
T ss_pred CCcEEEEEeCCCcccCHHHHHHHH
Confidence 999999999854 557776664
No 61
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=99.87 E-value=1.3e-22 Score=159.39 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=88.0
Q ss_pred hHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-HH-H
Q 033926 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-LI-N 82 (108)
Q Consensus 7 ~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~~-~ 82 (108)
.+-++++.+-.||+.+...+++.+|.++|+|.|++||+||||.|||.|++.+.-+++. .+|++. .||||+|+ |+ +
T Consensus 56 ~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~-~~gViasSaGNha~a~Ayaa~ 134 (457)
T KOG1250|consen 56 AHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK-KAGVIASSAGNHAQAAAYAAR 134 (457)
T ss_pred hhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh-cCceEEecCccHHHHHHHHHH
Confidence 3456778889999999988998899999999999999999999999999998777653 456554 99999999 99 9
Q ss_pred HcCCcEEEEecCCCCHHHHhhccc
Q 033926 83 HKNYAMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 83 ~~G~~~~ivvp~~~~~~k~~~~~~ 106 (108)
++|+++|||||..+|.-|++.++.
T Consensus 135 ~LgipaTIVmP~~tp~~kiq~~~n 158 (457)
T KOG1250|consen 135 KLGIPATIVMPVATPLMKIQRCRN 158 (457)
T ss_pred hcCCceEEEecCCChHHHHHHHhc
Confidence 999999999999999999998764
No 62
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=99.87 E-value=3.5e-22 Score=159.23 Aligned_cols=100 Identities=15% Similarity=0.073 Sum_probs=82.6
Q ss_pred hhhhHHH---HhcccCCCceeEccCccCCCC--ceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe---cchH
Q 033926 4 KCEIKKD---VTELIGHTPMVYLNNVVDGCV--AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF---NGNS 75 (108)
Q Consensus 4 ~~~~~~~---i~~~v~~TPLv~~~~l~~~~~--~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v---sGN~ 75 (108)
++++.+. ++..+++|||++++++....| ++||+|+|++||+||||||+|..++..+.+.|.. +.++ +||+
T Consensus 61 ~~~i~~~v~~~~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~~--~~vtetgsGN~ 138 (427)
T PRK12391 61 YIDIPEEVREIYRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGIK--RLTTETGAGQW 138 (427)
T ss_pred ccCChHHHHHHHcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCCC--EEEEccCchHH
Confidence 4455433 345678999999999887555 6999999999999999999999999999999854 3333 8999
Q ss_pred HHHH-HH-HHcCCcEEEEecCC---CCHHHHhhcc
Q 033926 76 PILK-LI-NHKNYAMNSVFLFS---VNVNNFNQAH 105 (108)
Q Consensus 76 g~al-~~-~~~G~~~~ivvp~~---~~~~k~~~~~ 105 (108)
|+|+ ++ +.+|++|+||||+. .++.|+++|+
T Consensus 139 G~alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr 173 (427)
T PRK12391 139 GSALALACALFGLECTVFMVRVSYEQKPYRRSLME 173 (427)
T ss_pred HHHHHHHHHHcCCcEEEEEecCCcccCHHHHHHHH
Confidence 9999 99 99999999999984 3667777765
No 63
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=99.87 E-value=2.1e-22 Score=158.40 Aligned_cols=95 Identities=16% Similarity=0.085 Sum_probs=77.2
Q ss_pred HHHhcccC-CCceeEccCccCCCC-ceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe---cchHHHHH-HH-
Q 033926 9 KDVTELIG-HTPMVYLNNVVDGCV-AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF---NGNSPILK-LI- 81 (108)
Q Consensus 9 ~~i~~~v~-~TPLv~~~~l~~~~~-~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v---sGN~g~al-~~- 81 (108)
+.+..+++ +|||++++++++..| .+||+|+|++|||||||||+|.+++..+.+.|. .++++ |||||+|+ ++
T Consensus 41 ~~~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~--~~vi~e~ssGN~G~alA~~a 118 (385)
T TIGR00263 41 ELLRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK--KRIIAETGAGQHGVATATAA 118 (385)
T ss_pred HHHHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC--CEEEEEcCcHHHHHHHHHHH
Confidence 33455665 899999999887666 799999999999999999999999999988773 23343 89999999 99
Q ss_pred HHcCCcEEEEecCC-CCH--HHHhhcc
Q 033926 82 NHKNYAMNSVFLFS-VNV--NNFNQAH 105 (108)
Q Consensus 82 ~~~G~~~~ivvp~~-~~~--~k~~~~~ 105 (108)
+.+|++|+||||+. .+. .++++|+
T Consensus 119 ~~~Gl~~~Iv~p~~~~~~~~~~~~~~~ 145 (385)
T TIGR00263 119 ALLGLDCEVYMGAEDVERQKPNVFRME 145 (385)
T ss_pred HHcCCCEEEEecCCcccccchHHHHHH
Confidence 99999999999986 444 3444443
No 64
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=99.87 E-value=1.2e-22 Score=160.48 Aligned_cols=93 Identities=16% Similarity=-0.029 Sum_probs=77.2
Q ss_pred ccCCCceeEccCccCCCC-ceEEEEeCCCCC-CcchhhHHHHHHHHHHHH--cCC--------------CC-----CCeE
Q 033926 14 LIGHTPMVYLNNVVDGCV-AHIAAKLEMMQP-CSSVKDRIAYSMIKDAED--KGL--------------IT-----PGKV 70 (108)
Q Consensus 14 ~v~~TPLv~~~~l~~~~~-~~i~~KlE~~np-tGS~K~R~a~~~l~~a~~--~g~--------------~~-----~g~~ 70 (108)
.+.+|||++++.|+...| .+||+|+|++|+ |||||+|||.+.+..+.+ .|. .+ .+++
T Consensus 38 ~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv 117 (396)
T TIGR03528 38 GYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFV 117 (396)
T ss_pred CCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEE
Confidence 568899999999987778 699999999995 999999999999987532 221 01 1222
Q ss_pred e--cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhhccc
Q 033926 71 F--NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 71 v--sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~~~~ 106 (108)
. +||||+|+ ++ +.+|++|+||||+++|+.|+++++-
T Consensus 118 ~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~ 157 (396)
T TIGR03528 118 TATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRA 157 (396)
T ss_pred EECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHh
Confidence 2 99999999 99 9999999999999999999998863
No 65
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=99.87 E-value=2.7e-22 Score=157.62 Aligned_cols=98 Identities=12% Similarity=-0.017 Sum_probs=80.8
Q ss_pred hHHHHhcccCCCceeEccCccCCCC-ceEEEEeCCCCC-CcchhhHHHHHHHHHHHHc----------------CCC---
Q 033926 7 IKKDVTELIGHTPMVYLNNVVDGCV-AHIAAKLEMMQP-CSSVKDRIAYSMIKDAEDK----------------GLI--- 65 (108)
Q Consensus 7 ~~~~i~~~v~~TPLv~~~~l~~~~~-~~i~~KlE~~np-tGS~K~R~a~~~l~~a~~~----------------g~~--- 65 (108)
++.++..+ .+|||++++.+.+..| .+||+|+|++|+ +||||+||+.+.+..+.++ +.+
T Consensus 13 ~~~~~~~~-~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (376)
T TIGR01747 13 FHKKIPGY-RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEK 91 (376)
T ss_pred HHHhCCCC-CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhh
Confidence 44556544 8999999999987788 599999999985 8999999999998887552 121
Q ss_pred --CCCeEe--cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 66 --TPGKVF--NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 66 --~~g~~v--sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
..+++. +||||+|+ ++ +.+|++|+||||+++|+.|+++++
T Consensus 92 ~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~ 137 (376)
T TIGR01747 92 MGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENIL 137 (376)
T ss_pred cCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHH
Confidence 112222 99999999 99 999999999999999999999886
No 66
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=99.86 E-value=1.2e-21 Score=155.06 Aligned_cols=83 Identities=13% Similarity=0.065 Sum_probs=73.3
Q ss_pred HhcccCC-CceeEccCccCCC-CceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe---cchHHHHH-HH-HH
Q 033926 11 VTELIGH-TPMVYLNNVVDGC-VAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF---NGNSPILK-LI-NH 83 (108)
Q Consensus 11 i~~~v~~-TPLv~~~~l~~~~-~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v---sGN~g~al-~~-~~ 83 (108)
+.+++|+ |||++++++++.. +++||+|+|++|||||||+|++...+..|.+.|.. ++++ +||||+|+ ++ +.
T Consensus 51 ~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk~--~vIaetgaGnhG~A~A~~aa~ 128 (397)
T PRK04346 51 LKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGKK--RIIAETGAGQHGVATATAAAL 128 (397)
T ss_pred HHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCCC--eEEEecCcHHHHHHHHHHHHH
Confidence 4567885 9999999998777 68999999999999999999999999999988843 3333 89999999 99 99
Q ss_pred cCCcEEEEecCC
Q 033926 84 KNYAMNSVFLFS 95 (108)
Q Consensus 84 ~G~~~~ivvp~~ 95 (108)
+|++|+||||+.
T Consensus 129 ~Gl~c~I~mp~~ 140 (397)
T PRK04346 129 LGLECVIYMGAE 140 (397)
T ss_pred cCCcEEEEecCC
Confidence 999999999995
No 67
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=99.86 E-value=1.6e-21 Score=154.43 Aligned_cols=85 Identities=13% Similarity=0.007 Sum_probs=73.8
Q ss_pred HhcccC-CCceeEccCccCCC-CceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe---cchHHHHH-HH-HH
Q 033926 11 VTELIG-HTPMVYLNNVVDGC-VAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF---NGNSPILK-LI-NH 83 (108)
Q Consensus 11 i~~~v~-~TPLv~~~~l~~~~-~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v---sGN~g~al-~~-~~ 83 (108)
+.+++| +|||++++++++.. +++||+|+|++|||||||||.+..++..|.+.|.. ++++ +||||+|+ ++ +.
T Consensus 55 ~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~~--~vI~etgsGnhG~A~A~aaa~ 132 (402)
T PRK13028 55 LKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGKK--RLIAETGAGQHGVATATAAAL 132 (402)
T ss_pred HHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCCC--eEEEecCcHHHHHHHHHHHHH
Confidence 456777 69999999998777 58999999999999999999999999999988742 3343 89999999 99 99
Q ss_pred cCCcEEEEecCCCC
Q 033926 84 KNYAMNSVFLFSVN 97 (108)
Q Consensus 84 ~G~~~~ivvp~~~~ 97 (108)
+|++|+||||+..+
T Consensus 133 ~Gl~~~I~m~~~d~ 146 (402)
T PRK13028 133 FGLECEIYMGEVDI 146 (402)
T ss_pred cCCCEEEEECCCcc
Confidence 99999999999633
No 68
>PLN02618 tryptophan synthase, beta chain
Probab=99.86 E-value=1.4e-21 Score=155.14 Aligned_cols=85 Identities=13% Similarity=0.081 Sum_probs=73.4
Q ss_pred HHHhcccC-CCceeEccCccCCC------CceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe---cchHHHH
Q 033926 9 KDVTELIG-HTPMVYLNNVVDGC------VAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF---NGNSPIL 78 (108)
Q Consensus 9 ~~i~~~v~-~TPLv~~~~l~~~~------~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v---sGN~g~a 78 (108)
..+.+++| +|||++++++++.. |++||+|+|++|||||||||++...+..|.+.|. .++++ +||||+|
T Consensus 57 ~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~--~~vIaesgaGNhG~A 134 (410)
T PLN02618 57 GILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK--KRIIAETGAGQHGVA 134 (410)
T ss_pred HHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC--CEEEEEcCcHHHHHH
Confidence 45677897 89999999998754 5899999999999999999999999988888763 23333 8999999
Q ss_pred H-HH-HHcCCcEEEEecCC
Q 033926 79 K-LI-NHKNYAMNSVFLFS 95 (108)
Q Consensus 79 l-~~-~~~G~~~~ivvp~~ 95 (108)
+ ++ +.+|++|+||||+.
T Consensus 135 lA~aaa~~Gl~~~I~m~~~ 153 (410)
T PLN02618 135 TATVCARFGLECIVYMGAQ 153 (410)
T ss_pred HHHHHHHcCCcEEEEEcCC
Confidence 9 99 99999999999995
No 69
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=99.86 E-value=1.3e-21 Score=152.76 Aligned_cols=94 Identities=14% Similarity=-0.013 Sum_probs=76.6
Q ss_pred HHHhcccC-CCceeEccCccCCC-CceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe---cchHHHHH-HH-
Q 033926 9 KDVTELIG-HTPMVYLNNVVDGC-VAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF---NGNSPILK-LI- 81 (108)
Q Consensus 9 ~~i~~~v~-~TPLv~~~~l~~~~-~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v---sGN~g~al-~~- 81 (108)
+...++++ +|||+++++++... +.+||+|+|++|||||||||++.+++..+.+.|.. ++++ |||||+|+ ++
T Consensus 25 ~~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~~--~vv~~~ssGN~g~alA~~a 102 (365)
T cd06446 25 ELYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKK--RVIAETGAGQHGVATATAC 102 (365)
T ss_pred HHhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCCC--eEEEecCchHHHHHHHHHH
Confidence 33444554 89999999987666 57999999999999999999999999999988743 3343 89999999 99
Q ss_pred HHcCCcEEEEecCCCCH---HHHhhc
Q 033926 82 NHKNYAMNSVFLFSVNV---NNFNQA 104 (108)
Q Consensus 82 ~~~G~~~~ivvp~~~~~---~k~~~~ 104 (108)
+.+|++|+||||+..++ .|++++
T Consensus 103 ~~~G~~~~ivvp~~~~~~~~~~~~~~ 128 (365)
T cd06446 103 ALFGLECEIYMGAVDVERQPLNVFRM 128 (365)
T ss_pred HHhCCCeEEEEcCCccccccchHHHH
Confidence 99999999999987442 344444
No 70
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=99.86 E-value=7.4e-22 Score=156.11 Aligned_cols=84 Identities=12% Similarity=-0.016 Sum_probs=71.3
Q ss_pred ccCCCceeEccCccCCCCc-eEEEE-------eCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-HH-
Q 033926 14 LIGHTPMVYLNNVVDGCVA-HIAAK-------LEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-LI- 81 (108)
Q Consensus 14 ~v~~TPLv~~~~l~~~~~~-~i~~K-------lE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~~- 81 (108)
..|.|||++++.+++..|. ++|+| +|++|||||||||+|.+++..+.+.|. .+++. +||||+|+ ++
T Consensus 59 ~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~--~~Vv~aSsGN~g~alA~~a 136 (398)
T TIGR03844 59 TRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG--KTLVVASAGNTGRAFAEVS 136 (398)
T ss_pred CCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHH
Confidence 4567999999998877787 89995 555999999999999999999998872 33333 99999999 99
Q ss_pred HHcCCcEEEEecCCCCHH
Q 033926 82 NHKNYAMNSVFLFSVNVN 99 (108)
Q Consensus 82 ~~~G~~~~ivvp~~~~~~ 99 (108)
+.+|++|+||||+++++.
T Consensus 137 a~~Gi~~~I~vP~~~~~~ 154 (398)
T TIGR03844 137 AITGQPVILVVPKSSADR 154 (398)
T ss_pred HHcCCcEEEEECCChHHH
Confidence 999999999999986543
No 71
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=99.85 E-value=3.2e-21 Score=160.79 Aligned_cols=93 Identities=11% Similarity=0.028 Sum_probs=79.0
Q ss_pred HhcccC-CCceeEccCccCC----C--CceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe---cchHHHHH-
Q 033926 11 VTELIG-HTPMVYLNNVVDG----C--VAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF---NGNSPILK- 79 (108)
Q Consensus 11 i~~~v~-~TPLv~~~~l~~~----~--~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v---sGN~g~al- 79 (108)
+.+++| +|||++++++++. . +++||+|+|++|||||||||+|.+++..|.+.|.. .+++ +||||+|+
T Consensus 319 ~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~~--~~IvetssGNhG~AlA 396 (695)
T PRK13802 319 NQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGKT--RVIAETGAGQHGVATA 396 (695)
T ss_pred HHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCCC--CEEEEECcHHHHHHHH
Confidence 456789 9999999988642 3 37999999999999999999999999999998854 2333 99999999
Q ss_pred HH-HHcCCcEEEEecCC---CCHHHHhhcc
Q 033926 80 LI-NHKNYAMNSVFLFS---VNVNNFNQAH 105 (108)
Q Consensus 80 ~~-~~~G~~~~ivvp~~---~~~~k~~~~~ 105 (108)
++ +.+|++|+||||+. .++.|+.+|+
T Consensus 397 ~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr 426 (695)
T PRK13802 397 TVCAMLGLKCRIYMGQIDARRQALNVARMR 426 (695)
T ss_pred HHHHHcCCCEEEEEeCCcccccHHHHHHHH
Confidence 99 99999999999995 3567777664
No 72
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=99.83 E-value=1e-20 Score=145.78 Aligned_cols=92 Identities=13% Similarity=-0.023 Sum_probs=79.0
Q ss_pred hHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCC--cchhhHHHHHHHHHHHHcCCCCCCeEe--c---chHHHHH
Q 033926 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPC--SSVKDRIAYSMIKDAEDKGLITPGKVF--N---GNSPILK 79 (108)
Q Consensus 7 ~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~npt--GS~K~R~a~~~l~~a~~~g~~~~g~~v--s---GN~g~al 79 (108)
-+.++...+++|||++++.+++..|.+||+|+|++||+ ||||||++.+++.++.+.|.. .++ + ||||+|+
T Consensus 5 ~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~~---~vvt~g~s~gN~g~al 81 (331)
T PRK03910 5 RFPRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGAD---TLITAGAIQSNHARQT 81 (331)
T ss_pred cCCCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCCC---EEEEcCcchhHHHHHH
Confidence 34567788999999999988776788999999999997 599999999999999988742 333 3 6999999
Q ss_pred -HH-HHcCCcEEEEecCCCCHHHH
Q 033926 80 -LI-NHKNYAMNSVFLFSVNVNNF 101 (108)
Q Consensus 80 -~~-~~~G~~~~ivvp~~~~~~k~ 101 (108)
++ +.+|++|+||||+.+++.|+
T Consensus 82 A~~a~~~G~~~~i~vp~~~~~~~~ 105 (331)
T PRK03910 82 AAAAAKLGLKCVLLLENPVPTEAE 105 (331)
T ss_pred HHHHHHhCCcEEEEEcCCCCcccc
Confidence 99 99999999999999887543
No 73
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=99.83 E-value=1.9e-20 Score=142.68 Aligned_cols=86 Identities=21% Similarity=0.089 Sum_probs=72.9
Q ss_pred cCCCceeEccCccCCCCceEEEEeCCCCCC--cchhhHHHHHHHHHHHHcCCCCCCeEe-----cchHHHHH-HH-HHcC
Q 033926 15 IGHTPMVYLNNVVDGCVAHIAAKLEMMQPC--SSVKDRIAYSMIKDAEDKGLITPGKVF-----NGNSPILK-LI-NHKN 85 (108)
Q Consensus 15 v~~TPLv~~~~l~~~~~~~i~~KlE~~npt--GS~K~R~a~~~l~~a~~~g~~~~g~~v-----sGN~g~al-~~-~~~G 85 (108)
..+|||++++.++...+.+||+|+|++||+ ||||||++.+++..++++|.. .++ +||||+|+ ++ +.+|
T Consensus 5 ~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~~---~vv~~g~ssGN~g~alA~~a~~~G 81 (311)
T TIGR01275 5 PWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGAD---TVITVGAIQSNHARATALAAKKLG 81 (311)
T ss_pred CCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCCC---EEEEcCCchhHHHHHHHHHHHHhC
Confidence 368999999988876788999999999998 999999999999999988742 333 38999999 99 9999
Q ss_pred CcEEEEecCCC-CHHHHhh
Q 033926 86 YAMNSVFLFSV-NVNNFNQ 103 (108)
Q Consensus 86 ~~~~ivvp~~~-~~~k~~~ 103 (108)
++++||||+.. +..+..+
T Consensus 82 ~~~~ivvp~~~~~~~~~~~ 100 (311)
T TIGR01275 82 LDAVLVLREKEELNGNLLL 100 (311)
T ss_pred CceEEEecCCccCCCCHHH
Confidence 99999999975 3344433
No 74
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.82 E-value=9.9e-21 Score=145.89 Aligned_cols=93 Identities=17% Similarity=0.103 Sum_probs=79.2
Q ss_pred hhhHHHHhcccCCCceeEccCccCCCCceEEEEeCCCCCC--cchhhHHHHHHHHHHHHcCCCCCCeE-e---cchHHHH
Q 033926 5 CEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPC--SSVKDRIAYSMIKDAEDKGLITPGKV-F---NGNSPIL 78 (108)
Q Consensus 5 ~~~~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~npt--GS~K~R~a~~~l~~a~~~g~~~~g~~-v---sGN~g~a 78 (108)
...+.++....++|||++++++++..|++||+|+|++||+ ||||||++.+++.++.++|.. .++ + +||||+|
T Consensus 9 ~~~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~~--~vv~~~~ssGN~g~a 86 (329)
T PRK14045 9 LSKFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGAD--VVITVGAVHSNHAFV 86 (329)
T ss_pred hhcCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCCC--EEEEeCccHHHHHHH
Confidence 4455678778899999999888766788999999999997 899999999999999988852 122 2 9999999
Q ss_pred H-HH-HHcCCcEEEEecCCCCHH
Q 033926 79 K-LI-NHKNYAMNSVFLFSVNVN 99 (108)
Q Consensus 79 l-~~-~~~G~~~~ivvp~~~~~~ 99 (108)
+ ++ +.+|+++++|||...+..
T Consensus 87 lA~~a~~~G~~~~ivvp~~~~~~ 109 (329)
T PRK14045 87 TGLAAKKLGLDAVLVLRGKEELK 109 (329)
T ss_pred HHHHHHHcCCeEEEEEeCCCCCC
Confidence 9 99 999999999999876533
No 75
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=99.82 E-value=2.2e-20 Score=154.23 Aligned_cols=93 Identities=16% Similarity=0.025 Sum_probs=76.6
Q ss_pred HhcccC-CCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe---cchHHHHH-HH-HHc
Q 033926 11 VTELIG-HTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF---NGNSPILK-LI-NHK 84 (108)
Q Consensus 11 i~~~v~-~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v---sGN~g~al-~~-~~~ 84 (108)
+.+++| +|||++++++++..|.+||+|+|++|||||||+|++...+..|.+.|.. +.++ +||||+|+ ++ +.+
T Consensus 264 ~~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~~--~vi~e~gsGnhG~A~A~~aa~~ 341 (610)
T PRK13803 264 LQNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGKT--RIIAETGAGQHGVATATACALF 341 (610)
T ss_pred HHHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCCC--EEEEecChHHHHHHHHHHHHHc
Confidence 345676 7999999999876789999999999999999999999999999887632 2333 89999999 99 999
Q ss_pred CCcEEEEecCCCC---HHHHhhcc
Q 033926 85 NYAMNSVFLFSVN---VNNFNQAH 105 (108)
Q Consensus 85 G~~~~ivvp~~~~---~~k~~~~~ 105 (108)
|++|+||||+... +.++.+|+
T Consensus 342 Gl~~~I~m~~~~~~~~~~nv~~m~ 365 (610)
T PRK13803 342 GLKCTIFMGEEDIKRQALNVERMK 365 (610)
T ss_pred CCcEEEEEeCCcccchhhHHHHHH
Confidence 9999999998742 33444443
No 76
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=99.80 E-value=1.4e-19 Score=139.83 Aligned_cols=94 Identities=20% Similarity=0.135 Sum_probs=77.5
Q ss_pred HHHhcccCCCceeEccCccCCCC--ceEEEEeCCCCCC---cchhhHHHHHHHHHHHHcCCCCCCeEe-----cchHHHH
Q 033926 9 KDVTELIGHTPMVYLNNVVDGCV--AHIAAKLEMMQPC---SSVKDRIAYSMIKDAEDKGLITPGKVF-----NGNSPIL 78 (108)
Q Consensus 9 ~~i~~~v~~TPLv~~~~l~~~~~--~~i~~KlE~~npt---GS~K~R~a~~~l~~a~~~g~~~~g~~v-----sGN~g~a 78 (108)
.++.-.+|+|||++++++++..| .+||+|+|++||+ ||+|||.+..++.+|+++|.. .++ +||||+|
T Consensus 6 ~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~---~vvs~ggs~gN~g~a 82 (337)
T TIGR01274 6 PRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGCT---TLVSIGGIQSNQTRQ 82 (337)
T ss_pred CccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCCC---EEEECCCCcchHHHH
Confidence 34455689999999999887665 4999999999987 677999999999999998853 333 3899999
Q ss_pred H-HH-HHcCCcEEEEecCCCC--------HHHHhhcc
Q 033926 79 K-LI-NHKNYAMNSVFLFSVN--------VNNFNQAH 105 (108)
Q Consensus 79 l-~~-~~~G~~~~ivvp~~~~--------~~k~~~~~ 105 (108)
+ ++ +.+|++|+||||+..+ +.|+.+++
T Consensus 83 lA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~ 119 (337)
T TIGR01274 83 VAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSR 119 (337)
T ss_pred HHHHHHHcCCcEEEEeccCCCccccchhccchHHHHH
Confidence 9 99 9999999999999653 46776654
No 77
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.79 E-value=1.2e-19 Score=140.06 Aligned_cols=88 Identities=19% Similarity=0.068 Sum_probs=74.7
Q ss_pred HHHHhcccCCCceeEccCccCCCC--ceEEEEeCCCCCC---cchhhHHHHHHHHHHHHcCCCCCCeEe-----cchHHH
Q 033926 8 KKDVTELIGHTPMVYLNNVVDGCV--AHIAAKLEMMQPC---SSVKDRIAYSMIKDAEDKGLITPGKVF-----NGNSPI 77 (108)
Q Consensus 8 ~~~i~~~v~~TPLv~~~~l~~~~~--~~i~~KlE~~npt---GS~K~R~a~~~l~~a~~~g~~~~g~~v-----sGN~g~ 77 (108)
+.++...+|+|||++++++....| .+||+|+|++||+ ||+|||.+..++.++.++|.. .++ +||||+
T Consensus 6 ~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~---~vvs~G~s~GN~g~ 82 (337)
T PRK12390 6 FPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGAD---TLVSIGGVQSNHTR 82 (337)
T ss_pred CCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCCC---EEEEeCCCccHHHH
Confidence 446667789999999998876566 7999999999998 777999999999999998852 333 489999
Q ss_pred HH-HH-HHcCCcEEEEecCCCCH
Q 033926 78 LK-LI-NHKNYAMNSVFLFSVNV 98 (108)
Q Consensus 78 al-~~-~~~G~~~~ivvp~~~~~ 98 (108)
|+ ++ +.+|++|+||+|..+|+
T Consensus 83 alA~aa~~~G~~~~iv~~~~~p~ 105 (337)
T PRK12390 83 QVAAVAAHLGMKCVLVQENWVNY 105 (337)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCC
Confidence 99 99 99999999998876653
No 78
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=99.79 E-value=1.5e-19 Score=137.83 Aligned_cols=85 Identities=20% Similarity=0.099 Sum_probs=71.8
Q ss_pred CceeEccCccCCC--CceEEEEeCCCCCC---cchhhHHHHHHHHHHHHcCCCCCCeEe-----cchHHHHH-HH-HHcC
Q 033926 18 TPMVYLNNVVDGC--VAHIAAKLEMMQPC---SSVKDRIAYSMIKDAEDKGLITPGKVF-----NGNSPILK-LI-NHKN 85 (108)
Q Consensus 18 TPLv~~~~l~~~~--~~~i~~KlE~~npt---GS~K~R~a~~~l~~a~~~g~~~~g~~v-----sGN~g~al-~~-~~~G 85 (108)
|||++++++.... +.+||+|+|++||+ ||+|||++.+++..+.++|.. .++ +||||+|+ ++ +.+|
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~~---~vv~~ggs~GN~g~alA~~a~~~G 77 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGAD---TLVTVGGIQSNHTRQVAAVAAKLG 77 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCCC---EEEECCCchhHHHHHHHHHHHHcC
Confidence 8999999887655 57999999999999 466999999999999988752 233 57999999 99 9999
Q ss_pred CcEEEEecCCCCH--------HHHhhcc
Q 033926 86 YAMNSVFLFSVNV--------NNFNQAH 105 (108)
Q Consensus 86 ~~~~ivvp~~~~~--------~k~~~~~ 105 (108)
++|+||||+++|+ .|+++++
T Consensus 78 ~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 105 (307)
T cd06449 78 LKCVLVQENWVPYSDAVYDRVGNILLSR 105 (307)
T ss_pred CeEEEEecCCCCcccccccccccHHHHH
Confidence 9999999998873 5666553
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=99.70 E-value=3e-17 Score=130.39 Aligned_cols=90 Identities=17% Similarity=0.111 Sum_probs=76.5
Q ss_pred ccCCCceeEccCccCCCC---ceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH-HH-HHcCC
Q 033926 14 LIGHTPMVYLNNVVDGCV---AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-LI-NHKNY 86 (108)
Q Consensus 14 ~v~~TPLv~~~~l~~~~~---~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-~~-~~~G~ 86 (108)
.-|.||+++..++....+ .++|+|.|++|||||||||++..++..+.+.|. ..+.+ |||+|.|+ .+ ++.|+
T Consensus 73 ~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~--~~I~~ASSGnTgAs~aaya~rag~ 150 (411)
T COG0498 73 GEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA--KTILCASSGNTGASAAAYAARAGL 150 (411)
T ss_pred hhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC--CEEEEeCCchHHHHHHHHhccCCC
Confidence 357899999877665444 359999999999999999999999999999874 12223 99999888 77 99999
Q ss_pred cEEEEecCC-CCHHHHhhcc
Q 033926 87 AMNSVFLFS-VNVNNFNQAH 105 (108)
Q Consensus 87 ~~~ivvp~~-~~~~k~~~~~ 105 (108)
+|.|++|.+ +++.|+.||.
T Consensus 151 ~v~Vl~P~g~vs~~k~~q~~ 170 (411)
T COG0498 151 KVFVLYPKGKVSPGKLAQML 170 (411)
T ss_pred eEEEEecCCCCCHHHHHHHH
Confidence 999999998 9999999975
No 80
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.42 E-value=2e-13 Score=106.92 Aligned_cols=88 Identities=16% Similarity=0.117 Sum_probs=73.6
Q ss_pred hhHHHHhcccC-CCceeEccCccCCC--CceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe---cchHHHHH
Q 033926 6 EIKKDVTELIG-HTPMVYLNNVVDGC--VAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF---NGNSPILK 79 (108)
Q Consensus 6 ~~~~~i~~~v~-~TPLv~~~~l~~~~--~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v---sGN~g~al 79 (108)
+-+.+|++++| .|||++.++|.+.+ |++||+|.|.+||+||+|...|...+..|.+.|..+ ++. .|.||.|+
T Consensus 110 ee~~eiy~y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGkkn--viaETGAGQhGvat 187 (477)
T KOG1395|consen 110 EEFLEIYKYLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGKKN--VIAETGAGQHGVAT 187 (477)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcccc--eeeccCCCccchHH
Confidence 33456666665 69999999997644 689999999999999999999999999888888542 332 99999999
Q ss_pred -HH-HHcCCcEEEEecCC
Q 033926 80 -LI-NHKNYAMNSVFLFS 95 (108)
Q Consensus 80 -~~-~~~G~~~~ivvp~~ 95 (108)
.+ +.+|++|+|||-..
T Consensus 188 A~a~a~FGl~C~v~mgAe 205 (477)
T KOG1395|consen 188 ATACAKFGLDCTVYMGAE 205 (477)
T ss_pred HHHHHHhCCceEEEechh
Confidence 99 99999999999653
No 81
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.36 E-value=1.1e-12 Score=102.03 Aligned_cols=94 Identities=21% Similarity=0.137 Sum_probs=75.6
Q ss_pred cchhhhHHHHhc---cc-CCCceeEccCccCCC--CceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe-cch
Q 033926 2 EDKCEIKKDVTE---LI-GHTPMVYLNNVVDGC--VAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF-NGN 74 (108)
Q Consensus 2 ~~~~~~~~~i~~---~v-~~TPLv~~~~l~~~~--~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v-sGN 74 (108)
|.+..|.+.+.+ .+ +.|||+|..+|.+.+ .++||+|.|+..||||+|...|......+..+|..+..+.. .|.
T Consensus 59 eR~i~IP~Ev~e~Y~~~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~~rl~TETGAGQ 138 (432)
T COG1350 59 ERYIKIPEEVREAYLQIGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTTETGAGQ 138 (432)
T ss_pred hhcccCcHHHHHHHHHhCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCceeeecccCCch
Confidence 344555554433 46 489999999997643 58999999999999999999999999999888855322222 999
Q ss_pred HHHHH-HH-HHcCCcEEEEecCC
Q 033926 75 SPILK-LI-NHKNYAMNSVFLFS 95 (108)
Q Consensus 75 ~g~al-~~-~~~G~~~~ivvp~~ 95 (108)
+|.|+ +| +.+|++|+|||-..
T Consensus 139 WGsAlslA~alf~lk~~V~Mvr~ 161 (432)
T COG1350 139 WGSALSLAAALFGLKATVFMVRV 161 (432)
T ss_pred HHHHHHHHHHHhCceeEEEEEeh
Confidence 99999 99 99999999999765
No 82
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.30 E-value=3.9e-12 Score=98.62 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=73.2
Q ss_pred HhcccC-CCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe----cchHHHHH-HH-HH
Q 033926 11 VTELIG-HTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF----NGNSPILK-LI-NH 83 (108)
Q Consensus 11 i~~~v~-~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v----sGN~g~al-~~-~~ 83 (108)
+.+++| .|||...++|++..+++||+|-|.+|+||++|..-++..+..|.+-|+.+ +| .|.||.|- .+ ++
T Consensus 49 l~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK~r---iIAETGAGQHGVAtAta~A~ 125 (396)
T COG0133 49 LKDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKTR---IIAETGAGQHGVATATAAAL 125 (396)
T ss_pred HHHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCCce---EEeecCCCcccHHHHHHHHH
Confidence 455676 69999999999989999999999999999999999999999999888652 34 99999999 99 99
Q ss_pred cCCcEEEEecCC
Q 033926 84 KNYAMNSVFLFS 95 (108)
Q Consensus 84 ~G~~~~ivvp~~ 95 (108)
+|++|+|||-..
T Consensus 126 fgl~C~iYMGa~ 137 (396)
T COG0133 126 FGLECVIYMGAE 137 (396)
T ss_pred hCCceEEEecch
Confidence 999999999763
No 83
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.26 E-value=1.9e-11 Score=98.62 Aligned_cols=80 Identities=13% Similarity=0.064 Sum_probs=61.8
Q ss_pred CceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHHH---HHHHHHcCCCCCCeEe---cchHHHHH--HH-HHcCCcE
Q 033926 18 TPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSM---IKDAEDKGLITPGKVF---NGNSPILK--LI-NHKNYAM 88 (108)
Q Consensus 18 TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~---l~~a~~~g~~~~g~~v---sGN~g~al--~~-~~~G~~~ 88 (108)
+||.++. .++|+.-.+++||||||||++..+ +..+.+... +.-.++ |||+|.|. .+ ...|+++
T Consensus 88 ~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~-~~~~Il~ATSGdTG~Aa~aaf~~~~gi~v 159 (460)
T cd01560 88 APLVQLG-------DNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRN-ERITILVATSGDTGSAAIEGFRGKPNVDV 159 (460)
T ss_pred cceEEeC-------CCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcC-CCeEEEEcCCCcHHHHHHHHHhCcCCCEE
Confidence 6777654 357999999999999999998754 666655411 111233 99999995 45 8889999
Q ss_pred EEEecCC-CCHHHHhhcc
Q 033926 89 NSVFLFS-VNVNNFNQAH 105 (108)
Q Consensus 89 ~ivvp~~-~~~~k~~~~~ 105 (108)
+|++|.+ +|+.+..||.
T Consensus 160 ~Vl~P~g~vs~~Q~~Qm~ 177 (460)
T cd01560 160 VVLYPKGGVSPIQELQMT 177 (460)
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 9999996 9999999885
No 84
>PRK09225 threonine synthase; Validated
Probab=99.17 E-value=6.4e-11 Score=95.66 Aligned_cols=79 Identities=14% Similarity=0.103 Sum_probs=62.8
Q ss_pred CCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHH---HHHHHHHcCCCCCCeEe---cchHHHHH-HH--HHcCCc
Q 033926 17 HTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYS---MIKDAEDKGLITPGKVF---NGNSPILK-LI--NHKNYA 87 (108)
Q Consensus 17 ~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~---~l~~a~~~g~~~~g~~v---sGN~g~al-~~--~~~G~~ 87 (108)
.+||.++. .++|+.--+++||||||||++.. ++..+.+ +. .-.++ |||+|.|+ .+ ...|++
T Consensus 88 ~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~--~~~Il~ATSGdtG~Aa~aaf~~~~gi~ 157 (462)
T PRK09225 88 IAPLVQLD-------DNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE--KITILGATSGDTGSAAAEAFRGKPNVR 157 (462)
T ss_pred ccceEEeC-------CCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC--CcEEEEcCCCcHHHHHHHHHhCcCCCE
Confidence 37777763 24788777899999999999877 7888876 42 12233 99999988 55 889999
Q ss_pred EEEEecCC-CCHHHHhhcc
Q 033926 88 MNSVFLFS-VNVNNFNQAH 105 (108)
Q Consensus 88 ~~ivvp~~-~~~~k~~~~~ 105 (108)
++|++|++ +|+.+..||.
T Consensus 158 ~~V~~P~g~vs~~q~~Qm~ 176 (462)
T PRK09225 158 VVILYPKGKVSPVQEKQMT 176 (462)
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 99999996 9999999885
No 85
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=98.05 E-value=1.7e-06 Score=67.55 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=69.4
Q ss_pred cCCCceeEccCccC--------CCCceEEEEeCCCCC-CcchhhHHHHH-HHHH----HHHcCCCCCCe-----------
Q 033926 15 IGHTPMVYLNNVVD--------GCVAHIAAKLEMMQP-CSSVKDRIAYS-MIKD----AEDKGLITPGK----------- 69 (108)
Q Consensus 15 v~~TPLv~~~~l~~--------~~~~~i~~KlE~~np-tGS~K~R~a~~-~l~~----a~~~g~~~~g~----------- 69 (108)
+-..||++.....+ ....++|+|+++.-| +||+|.||..+ .+.+ |++.|.+....
T Consensus 76 iIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~ 155 (443)
T COG3048 76 IIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFK 155 (443)
T ss_pred eeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHH
Confidence 44678888765432 234689999999999 79999999655 3434 44566554211
Q ss_pred --------Ee--cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhhccc
Q 033926 70 --------VF--NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 70 --------~v--sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~~~~ 106 (108)
.| +||.|+++ .. +.+|.+++|-|..++-+=|.+.+|.
T Consensus 156 ~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs 204 (443)
T COG3048 156 DFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRS 204 (443)
T ss_pred HHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHh
Confidence 12 99999999 99 9999999999999999988888764
No 86
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00048 Score=53.48 Aligned_cols=86 Identities=14% Similarity=0.040 Sum_probs=69.6
Q ss_pred HHHHhcccCCCceeEccCccCCCCceEEEEeCCCCC--CcchhhHHHHHHHHHHHHcCCCCCCeEe-----cchHHHHH-
Q 033926 8 KKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQP--CSSVKDRIAYSMIKDAEDKGLITPGKVF-----NGNSPILK- 79 (108)
Q Consensus 8 ~~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~np--tGS~K~R~a~~~l~~a~~~g~~~~g~~v-----sGN~g~al- 79 (108)
+.++.-..+.||+-.+++++...|.+||+|-|.+.+ .|--|.|=--+++.+|.+.|.. +.| --||..+.
T Consensus 6 f~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~d---TlvT~GgiQSNh~r~tA 82 (323)
T COG2515 6 FPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGAD---TLVTYGGIQSNHVRQTA 82 (323)
T ss_pred CCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCCc---EEEEecccchhHHHHHH
Confidence 445555567899999999988888999999999954 3567999999999999888753 333 55999999
Q ss_pred HH-HHcCCcEEEEecCCC
Q 033926 80 LI-NHKNYAMNSVFLFSV 96 (108)
Q Consensus 80 ~~-~~~G~~~~ivvp~~~ 96 (108)
++ +.+|++|+.++-...
T Consensus 83 avA~~lGl~~v~ile~~~ 100 (323)
T COG2515 83 AVAAKLGLKCVLILENIE 100 (323)
T ss_pred HHHHhcCCcEEEEEeccc
Confidence 88 999999999986543
No 87
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=75.82 E-value=3.2 Score=28.50 Aligned_cols=24 Identities=8% Similarity=-0.168 Sum_probs=22.0
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecCC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLFS 95 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~~ 95 (108)
+||+|.|+ .. +..|.+++++.++.
T Consensus 7 aG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 7 AGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp SSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred cCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 99999999 88 99999999998764
No 88
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=72.66 E-value=22 Score=25.55 Aligned_cols=41 Identities=12% Similarity=-0.055 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHc---CCCCCCeEe----cchHHHHH-HH-HHcCCcEEE
Q 033926 50 RIAYSMIKDAEDK---GLITPGKVF----NGNSPILK-LI-NHKNYAMNS 90 (108)
Q Consensus 50 R~a~~~l~~a~~~---g~~~~g~~v----sGN~g~al-~~-~~~G~~~~i 90 (108)
+|+...++.+.+. +..-.|.++ .||.|.++ .. ...|.++++
T Consensus 7 ~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv 56 (200)
T cd01075 7 YGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIV 56 (200)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 7788888877665 322234443 89999999 77 889998774
No 89
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=64.17 E-value=12 Score=22.21 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=17.0
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-.|++. +. +..|++++|+=
T Consensus 4 aG~sGl~aA~~L~~~g~~v~v~E 26 (68)
T PF13450_consen 4 AGISGLAAAYYLAKAGYRVTVFE 26 (68)
T ss_dssp -SHHHHHHHHHHHHTTSEEEEEE
T ss_pred eCHHHHHHHHHHHHCCCcEEEEe
Confidence 78899999 88 88899888873
No 90
>PRK14030 glutamate dehydrogenase; Provisional
Probab=62.01 E-value=39 Score=27.80 Aligned_cols=53 Identities=11% Similarity=-0.009 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHc-CCCCCCeEe----cchHHHHH-HH-HHcCCcEEE--------EecCCCCHHHH
Q 033926 49 DRIAYSMIKDAEDK-GLITPGKVF----NGNSPILK-LI-NHKNYAMNS--------VFLFSVNVNNF 101 (108)
Q Consensus 49 ~R~a~~~l~~a~~~-g~~~~g~~v----sGN~g~al-~~-~~~G~~~~i--------vvp~~~~~~k~ 101 (108)
-||+...+..+.+. |..-.|.++ .||-|..+ .. ..+|.+++. +-|++.+.+++
T Consensus 208 g~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l 275 (445)
T PRK14030 208 GFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKI 275 (445)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHH
Confidence 37777777766543 432234544 99999998 77 889999998 67888888874
No 91
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=61.78 E-value=38 Score=26.02 Aligned_cols=62 Identities=6% Similarity=-0.009 Sum_probs=45.8
Q ss_pred CCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe---cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhhccc
Q 033926 40 MMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF---NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 40 ~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v---sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~~~~ 106 (108)
+.||--. +|.-..++.+.+.|.. |..+ -=-+...+ .+ ..+|+..+.+++.+++.+++..+-.
T Consensus 102 Y~Npi~~---~Gie~F~~~~~~~Gvd--GlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~ 168 (265)
T COG0159 102 YYNPIFN---YGIEKFLRRAKEAGVD--GLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAE 168 (265)
T ss_pred eccHHHH---hhHHHHHHHHHHcCCC--EEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH
Confidence 3455433 6677788888888854 5554 44455577 77 9999999999999999999987643
No 92
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=59.08 E-value=44 Score=27.16 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=35.4
Q ss_pred CcchhhHHHHHHHHHHHHcCCCCCCeEe-------cchHHHHH-HHHHcC--CcEEEEecC
Q 033926 44 CSSVKDRIAYSMIKDAEDKGLITPGKVF-------NGNSPILK-LINHKN--YAMNSVFLF 94 (108)
Q Consensus 44 tGS~K~R~a~~~l~~a~~~g~~~~g~~v-------sGN~g~al-~~~~~G--~~~~ivvp~ 94 (108)
-|-.+.|=|..++.+...+|... |..+ +|-+++|+ .++.+| +|++...-.
T Consensus 27 VGQ~~AReAagiiv~mIk~~K~a-Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgS 86 (398)
T PF06068_consen 27 VGQEKAREAAGIIVDMIKEGKIA-GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGS 86 (398)
T ss_dssp ES-HHHHHHHHHHHHHHHTT--T-T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGG
T ss_pred cChHHHHHHHHHHHHHHhccccc-CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccc
Confidence 47789999999999999998764 3332 89999999 668887 677665543
No 93
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=58.28 E-value=23 Score=21.07 Aligned_cols=25 Identities=8% Similarity=-0.197 Sum_probs=22.2
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecCCC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLFSV 96 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~~~ 96 (108)
+|..|+-+ .+ +.+|.+++++.....
T Consensus 7 gG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 7 GGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp SSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred cCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 89999999 88 999999999987753
No 94
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=56.06 E-value=56 Score=26.97 Aligned_cols=53 Identities=9% Similarity=-0.055 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHc-CCCCCCeEe----cchHHHHH-HH-HHcCCcEEEE--------ecCCCCHHHHh
Q 033926 50 RIAYSMIKDAEDK-GLITPGKVF----NGNSPILK-LI-NHKNYAMNSV--------FLFSVNVNNFN 102 (108)
Q Consensus 50 R~a~~~l~~a~~~-g~~~~g~~v----sGN~g~al-~~-~~~G~~~~iv--------vp~~~~~~k~~ 102 (108)
+|+.+.+..+.+. |..-.|.++ +||-|..+ .. ..+|.+++.+ -|++.+.+++.
T Consensus 218 ~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~ 285 (454)
T PTZ00079 218 YGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLA 285 (454)
T ss_pred HHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHH
Confidence 6777777766543 322234443 99999999 77 8899888744 45557777763
No 95
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=52.16 E-value=58 Score=24.72 Aligned_cols=34 Identities=9% Similarity=0.077 Sum_probs=22.7
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
+|..|... .+ +.+|.+++++.....+++|.+.++
T Consensus 181 ~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~ 216 (355)
T cd08230 181 AGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVE 216 (355)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH
Confidence 66666666 55 888997666655445677777654
No 96
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=51.54 E-value=53 Score=22.17 Aligned_cols=79 Identities=18% Similarity=0.131 Sum_probs=48.7
Q ss_pred HHHhcccCCCceeEccCccCCCCceEEEEeCCCCCCcchhhHHHHH-HHHHHHHcCCCCCCeEecchHHHHH-HH-HHcC
Q 033926 9 KDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYS-MIKDAEDKGLITPGKVFNGNSPILK-LI-NHKN 85 (108)
Q Consensus 9 ~~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~-~l~~a~~~g~~~~g~~vsGN~g~al-~~-~~~G 85 (108)
+.+.++.|++|.+..-.+.++ ....+=+.| ||..+ .-+++-. +...+.+.|. ..++.+|-|-.. .+ +.+|
T Consensus 14 ~~vs~hFgrap~F~Ivd~e~g-~i~~vev~~--np~~~-~~~g~G~~~a~~l~~~gv---dvvi~~~iG~~a~~~l~~~G 86 (121)
T COG1433 14 SKVSPHFGRAPYFTIVDVEDG-EIKNVEVIE--NPAAS-AEKGAGIRIAELLVDEGV---DVVIASNIGPNAYNALKAAG 86 (121)
T ss_pred ccccCCccCCceEEEEEecCC-cEEEEEEee--ccccc-ccCcchHHHHHHHHHcCC---CEEEECccCHHHHHHHHHcC
Confidence 347889999999887765421 234444444 44332 2233322 3333445553 345588888888 77 9999
Q ss_pred CcEEEEecC
Q 033926 86 YAMNSVFLF 94 (108)
Q Consensus 86 ~~~~ivvp~ 94 (108)
+++...-+.
T Consensus 87 Ikv~~~~~~ 95 (121)
T COG1433 87 IKVYVAPGG 95 (121)
T ss_pred cEEEecCCC
Confidence 999877663
No 97
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=50.33 E-value=95 Score=23.52 Aligned_cols=52 Identities=8% Similarity=-0.075 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHc-CCCCCCeEe----cchHHHHH-HH-HHcCCcEEEE--------ecCCCCHHHH
Q 033926 50 RIAYSMIKDAEDK-GLITPGKVF----NGNSPILK-LI-NHKNYAMNSV--------FLFSVNVNNF 101 (108)
Q Consensus 50 R~a~~~l~~a~~~-g~~~~g~~v----sGN~g~al-~~-~~~G~~~~iv--------vp~~~~~~k~ 101 (108)
||+...++.+.+. +..-.|.++ .||-|..+ -. ..+|.+++.| -|+..+.+++
T Consensus 19 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l 85 (254)
T cd05313 19 YGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKL 85 (254)
T ss_pred HHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHH
Confidence 7777777776543 322234443 99999999 77 8899888855 4456666555
No 98
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=50.12 E-value=47 Score=26.13 Aligned_cols=27 Identities=7% Similarity=-0.133 Sum_probs=24.9
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecCCCCH
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLFSVNV 98 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~~~~~ 98 (108)
+.|.+.|+ .+ +.+|+++++..|+..-+
T Consensus 162 gNNv~nSl~~~~a~~G~dv~ia~Pk~~~p 190 (310)
T COG0078 162 GNNVANSLLLAAAKLGMDVRIATPKGYEP 190 (310)
T ss_pred cchHHHHHHHHHHHhCCeEEEECCCcCCc
Confidence 88999999 88 99999999999998665
No 99
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=49.70 E-value=25 Score=24.79 Aligned_cols=23 Identities=9% Similarity=-0.084 Sum_probs=19.1
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|..|.++ +. +..|++++++=++
T Consensus 7 aG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 7 AGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp -SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred CCHHHHHHHHHHHhCCCcEEEEECC
Confidence 99999999 87 9999999999764
No 100
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=48.44 E-value=25 Score=27.23 Aligned_cols=22 Identities=9% Similarity=-0.052 Sum_probs=20.2
Q ss_pred cchHHHHH-HH-HHcCCcEEEEec
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
+|-.|.++ ++ ++.|++++||=.
T Consensus 11 gG~aGl~~A~~L~~~G~~v~l~E~ 34 (384)
T PRK08849 11 GGMVGAATALGFAKQGRSVAVIEG 34 (384)
T ss_pred cCHHHHHHHHHHHhCCCcEEEEcC
Confidence 99999999 98 999999999864
No 101
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=47.77 E-value=24 Score=26.80 Aligned_cols=24 Identities=8% Similarity=0.025 Sum_probs=20.2
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecCC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLFS 95 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~~ 95 (108)
+|-.|.++ ++ ++.|++++|+=-..
T Consensus 7 aG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 7 GGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred CCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 99999999 88 99999988875443
No 102
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=47.46 E-value=27 Score=25.71 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=19.8
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecCC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLFS 95 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~~ 95 (108)
+|-.|.++ .+ +..|++++||=-..
T Consensus 9 aG~aGl~~A~~L~~~G~~v~i~E~~~ 34 (356)
T PF01494_consen 9 AGPAGLAAALALARAGIDVTIIERRP 34 (356)
T ss_dssp -SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCHHHHHHHHHHHhcccccccchhcc
Confidence 89999999 88 99999988885443
No 103
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=46.43 E-value=41 Score=29.74 Aligned_cols=23 Identities=4% Similarity=-0.112 Sum_probs=19.8
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|..|++. +. +..|++++|+=-.
T Consensus 246 aG~aGl~aA~~L~~~g~~v~v~E~~ 270 (808)
T PLN02328 246 AGLAGLVAARQLLSMGFKVVVLEGR 270 (808)
T ss_pred cCHHHHHHHHHHHHCCCcEEEEecc
Confidence 99999999 88 9999998887543
No 104
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=46.28 E-value=53 Score=19.82 Aligned_cols=73 Identities=15% Similarity=0.139 Sum_probs=43.8
Q ss_pred HHhcccCCCceeEccCccCCCCceEEEEeC--CCCCCcchhhHHHHHHHHHHHHcCCCCCCeEecchHHHHH-HH-HHcC
Q 033926 10 DVTELIGHTPMVYLNNVVDGCVAHIAAKLE--MMQPCSSVKDRIAYSMIKDAEDKGLITPGKVFNGNSPILK-LI-NHKN 85 (108)
Q Consensus 10 ~i~~~v~~TPLv~~~~l~~~~~~~i~~KlE--~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vsGN~g~al-~~-~~~G 85 (108)
+|..+.|++|.+-.-..... ..+ +++.+ ..+..+..+.+.+..+.. .| ...+++|+.|... .. ...|
T Consensus 4 ~v~~hFg~a~~f~I~d~~~~-~~~-~v~~~~~~~~~~~~~~~~~~~~l~~----~~---v~~li~~~iG~~~~~~L~~~g 74 (94)
T PF02579_consen 4 RVSPHFGRAPYFLIYDVEDG-EIK-FVENRNPACNEGGGGGDKIAKFLAE----EG---VDVLICGGIGEGAFRALKEAG 74 (94)
T ss_dssp BB-SBCTT-SEEEEEEEESS-CEE-EEEEEECECCCSSCHSTHHHHHHHH----TT---ESEEEESCSCHHHHHHHHHTT
T ss_pred eeeHHHCCCCEEEEEEEeCC-eEE-EEEeeccccccccccchhHHHHHHH----cC---CCEEEEeCCCHHHHHHHHHCC
Confidence 46778899998887665432 222 44444 444444445555443332 22 2244599999998 78 9999
Q ss_pred CcEEEE
Q 033926 86 YAMNSV 91 (108)
Q Consensus 86 ~~~~iv 91 (108)
+++...
T Consensus 75 I~v~~~ 80 (94)
T PF02579_consen 75 IKVYQG 80 (94)
T ss_dssp SEEEES
T ss_pred CEEEEc
Confidence 998877
No 105
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=44.87 E-value=67 Score=24.40 Aligned_cols=57 Identities=7% Similarity=0.044 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCeEe---cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 47 VKDRIAYSMIKDAEDKGLITPGKVF---NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 47 ~K~R~a~~~l~~a~~~g~~~~g~~v---sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
+.-+|.-..+..+.+.|.. |..+ .=.....+ -+ ...|++.+.+++.++++++++.+-
T Consensus 99 i~~~G~e~F~~~~~~aGvd--GlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~ 160 (259)
T PF00290_consen 99 IFQYGIERFFKEAKEAGVD--GLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIA 160 (259)
T ss_dssp HHHH-HHHHHHHHHHHTEE--EEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHH
T ss_pred HhccchHHHHHHHHHcCCC--EEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH
Confidence 4556777778888887742 4555 33444566 66 899999999999999999988764
No 106
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=42.96 E-value=33 Score=26.72 Aligned_cols=23 Identities=9% Similarity=0.017 Sum_probs=20.7
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|-.|.++ .+ ++.|++++||=..
T Consensus 10 aG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 10 AGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEccC
Confidence 99999999 99 9999999998554
No 107
>PRK08013 oxidoreductase; Provisional
Probab=42.90 E-value=31 Score=26.85 Aligned_cols=23 Identities=4% Similarity=-0.161 Sum_probs=20.2
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|-.|.++ ++ ++.|++++|+=..
T Consensus 11 aGpaGl~~A~~La~~G~~v~viE~~ 35 (400)
T PRK08013 11 GGMVGLAVACGLQGSGLRVAVLEQR 35 (400)
T ss_pred cCHHHHHHHHHHhhCCCEEEEEeCC
Confidence 99999999 88 9999999887643
No 108
>PRK09126 hypothetical protein; Provisional
Probab=41.99 E-value=35 Score=26.20 Aligned_cols=21 Identities=5% Similarity=-0.062 Sum_probs=19.0
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-.|.++ .+ ++.|++++|+=
T Consensus 11 gG~aGl~~A~~L~~~G~~v~v~E 33 (392)
T PRK09126 11 AGPAGLSFARSLAGSGLKVTLIE 33 (392)
T ss_pred cCHHHHHHHHHHHhCCCcEEEEe
Confidence 99999999 88 99999998874
No 109
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=41.95 E-value=38 Score=23.21 Aligned_cols=25 Identities=4% Similarity=-0.033 Sum_probs=16.4
Q ss_pred Ee-cchHHHHH-HH-HHcCCc-EEEEecC
Q 033926 70 VF-NGNSPILK-LI-NHKNYA-MNSVFLF 94 (108)
Q Consensus 70 ~v-sGN~g~al-~~-~~~G~~-~~ivvp~ 94 (108)
+| +|-+|++. +. ...|++ ++|+=+.
T Consensus 2 IIGaG~aGl~~a~~l~~~g~~~v~v~e~~ 30 (203)
T PF13738_consen 2 IIGAGPAGLAAAAHLLERGIDPVVVLERN 30 (203)
T ss_dssp EE--SHHHHHHHHHHHHTT---EEEEESS
T ss_pred EECcCHHHHHHHHHHHhCCCCcEEEEeCC
Confidence 45 89999999 77 888998 5555443
No 110
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=41.47 E-value=26 Score=24.28 Aligned_cols=26 Identities=0% Similarity=-0.262 Sum_probs=23.9
Q ss_pred chHHHHH-HH-HHcCCcEEEEecCC--CCH
Q 033926 73 GNSPILK-LI-NHKNYAMNSVFLFS--VNV 98 (108)
Q Consensus 73 GN~g~al-~~-~~~G~~~~ivvp~~--~~~ 98 (108)
+|.+.|+ .+ +.+|..++++.|+. .++
T Consensus 13 ~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~ 42 (158)
T PF00185_consen 13 NRVAHSLIELLAKFGMEVVLIAPEGLRYPP 42 (158)
T ss_dssp SHHHHHHHHHHHHTTSEEEEESSGGGGGSH
T ss_pred ChHHHHHHHHHHHcCCEEEEECCCcccCCC
Confidence 7999999 88 99999999999998 666
No 111
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=40.77 E-value=1.3e+02 Score=21.95 Aligned_cols=31 Identities=10% Similarity=-0.101 Sum_probs=20.4
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhhc
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQA 104 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~~ 104 (108)
.|..|+.. .. +.+|.+.++++ +.+++|.+.+
T Consensus 129 ~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a 161 (280)
T TIGR03366 129 AGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELA 161 (280)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHH
Confidence 77777777 55 88899755555 3456666544
No 112
>PRK07236 hypothetical protein; Provisional
Probab=40.24 E-value=38 Score=26.14 Aligned_cols=23 Identities=4% Similarity=0.096 Sum_probs=20.4
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|-.|.++ .+ +..|++++||=-.
T Consensus 14 aG~aGl~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 14 GSLGGLFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCHHHHHHHHHHHhCCCCEEEEecC
Confidence 99999999 88 9999999988644
No 113
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=39.71 E-value=42 Score=24.70 Aligned_cols=23 Identities=4% Similarity=-0.086 Sum_probs=21.2
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|-.|.++ +. ++.|+++++|=..
T Consensus 7 aGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 7 AGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred cCHHHHHHHHHHHHCCCeEEEEeec
Confidence 99999999 88 9999999999776
No 114
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=39.42 E-value=66 Score=26.36 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=40.9
Q ss_pred EEEeCCCCCCcchhhHHHHHHHHHHHHcCCCC-CCeEe-----cchHHHHH-HHHHcC--CcEEEEe
Q 033926 35 AAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT-PGKVF-----NGNSPILK-LINHKN--YAMNSVF 92 (108)
Q Consensus 35 ~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~-~g~~v-----sGN~g~al-~~~~~G--~~~~ivv 92 (108)
-+|.-.----|-.|.|=|...+.+..++|... .|+.+ +|-+++|+ .++.+| +|++-..
T Consensus 33 ~~k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~is 99 (450)
T COG1224 33 KAKFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAIS 99 (450)
T ss_pred CEeEcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeec
Confidence 33444344468899999999999999998664 23223 99999999 667777 5655443
No 115
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=39.31 E-value=1.4e+02 Score=22.57 Aligned_cols=54 Identities=11% Similarity=0.055 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHcCCCCCCeEe---cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 50 RIAYSMIKDAEDKGLITPGKVF---NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 50 R~a~~~l~~a~~~g~~~~g~~v---sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
+|.-..+..+.+.|.. |..+ .=...--+ -. +..|+..+.+++.++++++++.+-
T Consensus 106 ~G~e~F~~~~~~aGvd--gviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~ 164 (263)
T CHL00200 106 YGINKFIKKISQAGVK--GLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIA 164 (263)
T ss_pred hCHHHHHHHHHHcCCe--EEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHH
Confidence 4666778888888843 5555 44455555 55 999999999999999999987654
No 116
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=39.29 E-value=39 Score=26.27 Aligned_cols=21 Identities=5% Similarity=0.050 Sum_probs=19.0
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-.|.++ .+ ++.|++++|+=
T Consensus 12 aG~~Gl~~A~~L~~~G~~v~viE 34 (405)
T PRK08850 12 GGMVGLALAAALKESDLRIAVIE 34 (405)
T ss_pred ccHHHHHHHHHHHhCCCEEEEEc
Confidence 99999999 88 99999988874
No 117
>PRK06847 hypothetical protein; Provisional
Probab=38.97 E-value=42 Score=25.52 Aligned_cols=21 Identities=14% Similarity=0.146 Sum_probs=19.0
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-.|+++ .+ +..|++++|+=
T Consensus 12 aG~aGl~~A~~L~~~g~~v~v~E 34 (375)
T PRK06847 12 GGIGGLSAAIALRRAGIAVDLVE 34 (375)
T ss_pred CCHHHHHHHHHHHhCCCCEEEEe
Confidence 99999999 88 99999998883
No 118
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=38.85 E-value=38 Score=26.00 Aligned_cols=23 Identities=9% Similarity=0.033 Sum_probs=20.0
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|-.|.++ ++ ++.|++++|+=..
T Consensus 15 aG~~Gl~~A~~L~~~G~~v~liE~~ 39 (388)
T PRK07494 15 GGPAGLAAAIALARAGASVALVAPE 39 (388)
T ss_pred cCHHHHHHHHHHhcCCCeEEEEeCC
Confidence 99999999 88 9999998887543
No 119
>PRK05868 hypothetical protein; Validated
Probab=38.78 E-value=43 Score=25.96 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=19.0
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-.|.++ ++ ++.|++++|+=
T Consensus 9 gG~aGl~~A~~L~~~G~~v~viE 31 (372)
T PRK05868 9 ASVAGTAAAYWLGRHGYSVTMVE 31 (372)
T ss_pred CCHHHHHHHHHHHhCCCCEEEEc
Confidence 99999999 88 99999988874
No 120
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=38.44 E-value=44 Score=25.39 Aligned_cols=22 Identities=5% Similarity=-0.176 Sum_probs=19.0
Q ss_pred cchHHHHH-HH-HHcCCcEEEEec
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
+|-+|.++ +. +..|.+++++=.
T Consensus 8 aGi~G~s~A~~La~~g~~V~l~e~ 31 (380)
T TIGR01377 8 AGIMGCFAAYHLAKHGKKTLLLEQ 31 (380)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEec
Confidence 89999999 88 889999887644
No 121
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=38.44 E-value=1.6e+02 Score=21.54 Aligned_cols=46 Identities=15% Similarity=-0.112 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHc-CCCCCCeEe----cchHHHHH-HH-HHcCCcEEEEecCC
Q 033926 50 RIAYSMIKDAEDK-GLITPGKVF----NGNSPILK-LI-NHKNYAMNSVFLFS 95 (108)
Q Consensus 50 R~a~~~l~~a~~~-g~~~~g~~v----sGN~g~al-~~-~~~G~~~~ivvp~~ 95 (108)
||+...++.+.+. +..-.|..+ .||-|..+ -. ...|.+.+.+.+.+
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~ 56 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPD 56 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 6677777766543 211124443 99999999 77 88898888887654
No 122
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=38.40 E-value=39 Score=26.09 Aligned_cols=22 Identities=23% Similarity=0.105 Sum_probs=19.9
Q ss_pred cchHHHHH-HH-HHcCCcEEEEec
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
+|-.|.++ .+ ++.|++++|+=.
T Consensus 9 gG~~Gl~~A~~L~~~G~~v~l~E~ 32 (374)
T PRK06617 9 CGLSGMLTALSFAQKGIKTTIFES 32 (374)
T ss_pred CCHHHHHHHHHHHcCCCeEEEecC
Confidence 99999999 88 999999998853
No 123
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=38.34 E-value=48 Score=25.54 Aligned_cols=23 Identities=13% Similarity=-0.100 Sum_probs=19.8
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|-.|.++ ++ ++.|++++++=..
T Consensus 14 aG~aGl~~A~~La~~G~~v~liE~~ 38 (392)
T PRK08773 14 GGVVGAACALALADAGLSVALVEGR 38 (392)
T ss_pred cCHHHHHHHHHHhcCCCEEEEEeCC
Confidence 99999999 99 9999997777543
No 124
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=37.94 E-value=50 Score=26.63 Aligned_cols=29 Identities=7% Similarity=-0.141 Sum_probs=25.0
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecCCCCHHH
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLFSVNVNN 100 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k 100 (108)
+|..|.-+ .+ +.+|+++.++-|..-+|..
T Consensus 9 GGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~ 39 (375)
T COG0026 9 GGQLGRMMALAAARLGIKVIVLDPDADAPAA 39 (375)
T ss_pred CcHHHHHHHHHHHhcCCEEEEecCCCCCchh
Confidence 99999999 99 9999999999988654443
No 125
>PRK06184 hypothetical protein; Provisional
Probab=37.90 E-value=43 Score=27.03 Aligned_cols=22 Identities=5% Similarity=0.080 Sum_probs=19.7
Q ss_pred cchHHHHH-HH-HHcCCcEEEEec
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
+|-.|+++ +. ++.|++++|+=-
T Consensus 11 aGpaGl~~A~~La~~Gi~v~viE~ 34 (502)
T PRK06184 11 AGPTGLTLAIELARRGVSFRLIEK 34 (502)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEeC
Confidence 99999999 88 999999888843
No 126
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=37.40 E-value=1.2e+02 Score=24.19 Aligned_cols=68 Identities=21% Similarity=0.189 Sum_probs=44.4
Q ss_pred eEEEEeCCCCC-----CcchhhHHHHHHHHHHHHcCCCCCCeEe---cchHHHHH---HH-HHcCCcEEEEecCCCCHHH
Q 033926 33 HIAAKLEMMQP-----CSSVKDRIAYSMIKDAEDKGLITPGKVF---NGNSPILK---LI-NHKNYAMNSVFLFSVNVNN 100 (108)
Q Consensus 33 ~i~~KlE~~np-----tGS~K~R~a~~~l~~a~~~g~~~~g~~v---sGN~g~al---~~-~~~G~~~~ivvp~~~~~~k 100 (108)
+-++|.+.--| |-|.---.|+-|+.+..+- .+|..+ ++|.|.+- =. +.+||+.+=|+=+.-.-++
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L---~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~iee 200 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQL---NKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEE 200 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhc---CCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHH
Confidence 35566665222 2333444688899888763 445554 88887665 33 9999999999887766666
Q ss_pred Hhh
Q 033926 101 FNQ 103 (108)
Q Consensus 101 ~~~ 103 (108)
+..
T Consensus 201 l~~ 203 (354)
T KOG0025|consen 201 LKK 203 (354)
T ss_pred HHH
Confidence 543
No 127
>PRK08163 salicylate hydroxylase; Provisional
Probab=36.93 E-value=46 Score=25.54 Aligned_cols=21 Identities=10% Similarity=0.108 Sum_probs=19.4
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-.|.++ .+ ++.|++++|+=
T Consensus 12 aGiaGl~~A~~L~~~g~~v~v~E 34 (396)
T PRK08163 12 GGIGGLAAALALARQGIKVKLLE 34 (396)
T ss_pred CcHHHHHHHHHHHhCCCcEEEEe
Confidence 99999999 88 99999999884
No 128
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=36.78 E-value=40 Score=26.14 Aligned_cols=21 Identities=10% Similarity=-0.105 Sum_probs=19.0
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-.|.++ ++ ++.|++++|+=
T Consensus 10 aG~aGl~~A~~L~~~G~~v~viE 32 (405)
T PRK05714 10 AGMVGSALALALQGSGLEVLLLD 32 (405)
T ss_pred ccHHHHHHHHHHhcCCCEEEEEc
Confidence 99999999 88 99999998874
No 129
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=36.64 E-value=44 Score=25.83 Aligned_cols=21 Identities=5% Similarity=-0.007 Sum_probs=19.2
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-.|.++ .+ ++.|++++|+=
T Consensus 26 aG~aGl~~A~~L~~~G~~v~v~E 48 (415)
T PRK07364 26 GGIVGLTLAAALKDSGLRIALIE 48 (415)
T ss_pred cCHHHHHHHHHHhcCCCEEEEEe
Confidence 99999999 88 99999988884
No 130
>PRK06753 hypothetical protein; Provisional
Probab=36.34 E-value=49 Score=25.18 Aligned_cols=21 Identities=5% Similarity=0.056 Sum_probs=18.8
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-.|.++ .+ ++.|++++|+=
T Consensus 8 gG~aGl~~A~~L~~~g~~v~v~E 30 (373)
T PRK06753 8 AGIGGLTAAALLQEQGHEVKVFE 30 (373)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEe
Confidence 99999999 88 99999988874
No 131
>PRK14031 glutamate dehydrogenase; Provisional
Probab=36.32 E-value=1.4e+02 Score=24.55 Aligned_cols=44 Identities=14% Similarity=-0.024 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHc-CCCCCCeEe----cchHHHHH-HH-HHcCCcEEEEec
Q 033926 50 RIAYSMIKDAEDK-GLITPGKVF----NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 50 R~a~~~l~~a~~~-g~~~~g~~v----sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
||+...+..+.+. |..-.|.++ .||-|... .. ...|.++++|-+
T Consensus 209 ~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 209 YGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred HHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 6777777766543 332234443 99999999 77 999999998877
No 132
>PRK06475 salicylate hydroxylase; Provisional
Probab=36.17 E-value=55 Score=25.44 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=19.7
Q ss_pred cchHHHHH-HH-HHcCCcEEEEec
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
+|-.|+++ .+ ++.|++++|+=.
T Consensus 10 gGiaGl~~A~~L~~~G~~V~i~E~ 33 (400)
T PRK06475 10 AGVAGLSAALELAARGWAVTIIEK 33 (400)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEec
Confidence 99999999 88 999999888753
No 133
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=36.03 E-value=54 Score=23.56 Aligned_cols=24 Identities=13% Similarity=-0.088 Sum_probs=19.9
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecCC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLFS 95 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~~ 95 (108)
+|-.|.++ +. +..|++++|+=...
T Consensus 8 aG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 8 AGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 89999999 88 99999988775443
No 134
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=35.79 E-value=50 Score=25.76 Aligned_cols=23 Identities=13% Similarity=-0.003 Sum_probs=20.3
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|-.|.++ ++ ++.|++++|+=-.
T Consensus 10 aG~aGl~~A~~L~~~G~~v~viE~~ 34 (390)
T TIGR02360 10 AGPSGLLLGQLLHKAGIDNVILERQ 34 (390)
T ss_pred ccHHHHHHHHHHHHCCCCEEEEECC
Confidence 99999999 88 9999999888644
No 135
>COG3150 Predicted esterase [General function prediction only]
Probab=35.77 E-value=1e+02 Score=22.51 Aligned_cols=53 Identities=6% Similarity=-0.147 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHcCC-CCCCeEe-cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHh
Q 033926 49 DRIAYSMIKDAEDKGL-ITPGKVF-NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFN 102 (108)
Q Consensus 49 ~R~a~~~l~~a~~~g~-~~~g~~v-sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~ 102 (108)
.|-|...+.+++++.. ..++ .+ ||=-|--. |. .+.|++.++|=|...|.+..+
T Consensus 42 p~~a~~ele~~i~~~~~~~p~-ivGssLGGY~At~l~~~~Girav~~NPav~P~e~l~ 98 (191)
T COG3150 42 PQQALKELEKAVQELGDESPL-IVGSSLGGYYATWLGFLCGIRAVVFNPAVRPYELLT 98 (191)
T ss_pred HHHHHHHHHHHHHHcCCCCce-EEeecchHHHHHHHHHHhCChhhhcCCCcCchhhhh
Confidence 4567788888876543 2233 33 55555555 88 999999999999988877553
No 136
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=35.76 E-value=1.1e+02 Score=23.49 Aligned_cols=45 Identities=9% Similarity=0.013 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCCCCCeEe----cchHHHHH-HH-HHcCCcEEEEecCC
Q 033926 50 RIAYSMIKDAEDKGLITPGKVF----NGNSPILK-LI-NHKNYAMNSVFLFS 95 (108)
Q Consensus 50 R~a~~~l~~a~~~g~~~~g~~v----sGN~g~al-~~-~~~G~~~~ivvp~~ 95 (108)
+.+...|..|.++|..- .+.+ -.+-|..+ +. +..|++++++.+..
T Consensus 120 ~tv~~~l~~A~~~gk~~-~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~Dsa 170 (275)
T PRK08335 120 SAVLEILKTAKRKGKRF-KVILTESAPDYEGLALANELEFLGIEFEVITDAQ 170 (275)
T ss_pred HHHHHHHHHHHHcCCce-EEEEecCCCchhHHHHHHHHHHCCCCEEEEeccH
Confidence 56777777777666421 1222 45666667 66 77788877776554
No 137
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=35.34 E-value=74 Score=23.75 Aligned_cols=23 Identities=9% Similarity=-0.076 Sum_probs=19.9
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
.|+.|.++ .. +..|++++++-++
T Consensus 9 ~G~mG~~iA~~la~~G~~V~~~d~~ 33 (288)
T PRK09260 9 AGVMGRGIAYVFAVSGFQTTLVDIK 33 (288)
T ss_pred ccHHHHHHHHHHHhCCCcEEEEeCC
Confidence 99999999 88 8999999988543
No 138
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=34.25 E-value=60 Score=25.21 Aligned_cols=23 Identities=9% Similarity=-0.127 Sum_probs=18.3
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|.+|++. +. +..|.+++++=-.
T Consensus 7 ~G~AGl~AA~~Aae~G~~V~lvek~ 31 (417)
T PF00890_consen 7 GGLAGLAAAIEAAEAGAKVLLVEKG 31 (417)
T ss_dssp SSHHHHHHHHHHHHTTT-EEEEESS
T ss_pred CCHHHHHHHHHHhhhcCeEEEEEee
Confidence 99999999 77 9999988877543
No 139
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=34.20 E-value=48 Score=25.47 Aligned_cols=23 Identities=9% Similarity=-0.002 Sum_probs=20.0
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|-.|.++ .+ +..|++++++=..
T Consensus 13 gG~aGl~~A~~La~~G~~V~liE~~ 37 (391)
T PRK08020 13 GGMVGAALALGLAQHGFSVAVLEHA 37 (391)
T ss_pred cCHHHHHHHHHHhcCCCEEEEEcCC
Confidence 99999999 88 9999998887543
No 140
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=33.97 E-value=49 Score=22.78 Aligned_cols=20 Identities=10% Similarity=-0.154 Sum_probs=15.1
Q ss_pred cchHHHHH-HH-HHcCCcEEEE
Q 033926 72 NGNSPILK-LI-NHKNYAMNSV 91 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~iv 91 (108)
+||.|.+. .+ ..+|.+++++
T Consensus 28 ~G~vg~gA~~~~~~lGa~v~~~ 49 (168)
T PF01262_consen 28 AGRVGQGAAEIAKGLGAEVVVP 49 (168)
T ss_dssp TSHHHHHHHHHHHHTT-EEEEE
T ss_pred CCHHHHHHHHHHhHCCCEEEec
Confidence 99999998 77 8888875554
No 141
>PRK08244 hypothetical protein; Provisional
Probab=33.84 E-value=57 Score=26.24 Aligned_cols=22 Identities=5% Similarity=-0.117 Sum_probs=19.8
Q ss_pred cchHHHHH-HH-HHcCCcEEEEec
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
+|-.|.++ +. ++.|++++|+=-
T Consensus 10 aGpaGl~lA~~L~~~G~~v~viEr 33 (493)
T PRK08244 10 GGPVGLMLASELALAGVKTCVIER 33 (493)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEec
Confidence 99999999 88 999999988853
No 142
>PRK07588 hypothetical protein; Provisional
Probab=33.75 E-value=56 Score=25.17 Aligned_cols=22 Identities=5% Similarity=-0.221 Sum_probs=19.3
Q ss_pred cchHHHHH-HH-HHcCCcEEEEec
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
+|-.|.++ .+ ++.|++++|+=.
T Consensus 8 gG~aGl~~A~~L~~~G~~v~v~E~ 31 (391)
T PRK07588 8 AGIAGPTLAYWLRRYGHEPTLIER 31 (391)
T ss_pred ccHHHHHHHHHHHHCCCceEEEeC
Confidence 99999999 88 999999888743
No 143
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=33.48 E-value=70 Score=19.35 Aligned_cols=30 Identities=13% Similarity=-0.136 Sum_probs=20.3
Q ss_pred cchHHHHH-HH-HHcC---CcEEEEecCCCCHHHHhh
Q 033926 72 NGNSPILK-LI-NHKN---YAMNSVFLFSVNVNNFNQ 103 (108)
Q Consensus 72 sGN~g~al-~~-~~~G---~~~~ivvp~~~~~~k~~~ 103 (108)
+||.|.++ .- ...| .++.++. +-+++|.+.
T Consensus 7 ~G~mg~al~~~l~~~g~~~~~v~~~~--~r~~~~~~~ 41 (96)
T PF03807_consen 7 AGNMGSALARGLLASGIKPHEVIIVS--SRSPEKAAE 41 (96)
T ss_dssp TSHHHHHHHHHHHHTTS-GGEEEEEE--ESSHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCceeEEeec--cCcHHHHHH
Confidence 89999999 77 8888 5666543 234555543
No 144
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=33.16 E-value=2.2e+02 Score=21.67 Aligned_cols=24 Identities=8% Similarity=-0.031 Sum_probs=19.5
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecCC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLFS 95 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~~ 95 (108)
+|-+|.|+ ++ +..|++-+.++..+
T Consensus 132 aGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 132 AGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred CcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 88889999 88 89999766666555
No 145
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=33.04 E-value=64 Score=23.35 Aligned_cols=22 Identities=9% Similarity=0.015 Sum_probs=19.2
Q ss_pred cchHHHHH-HH-HHcCCcEEEEec
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
+|-.|++. .. +..|+++++|=.
T Consensus 8 ~G~aGl~aA~~l~~~g~~v~lie~ 31 (300)
T TIGR01292 8 AGPAGLTAAIYAARANLKTLIIEG 31 (300)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEec
Confidence 99999999 87 889999888764
No 146
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=32.86 E-value=45 Score=26.87 Aligned_cols=50 Identities=22% Similarity=0.257 Sum_probs=37.8
Q ss_pred CCcchhhHHHHHHHHHHHHcCCCCCCeEe-------cchHHHHH-HHHHcC--CcEEEEec
Q 033926 43 PCSSVKDRIAYSMIKDAEDKGLITPGKVF-------NGNSPILK-LINHKN--YAMNSVFL 93 (108)
Q Consensus 43 ptGS~K~R~a~~~l~~a~~~g~~~~g~~v-------sGN~g~al-~~~~~G--~~~~ivvp 93 (108)
--|-.|.|-|...+.+..++|.+. |..+ +|-+++|+ +++.+| .+++...-
T Consensus 42 mVGQ~~AR~Aagvi~kmi~egkia-GraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~g 101 (454)
T KOG2680|consen 42 MVGQVKARKAAGVILKMIREGKIA-GRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISG 101 (454)
T ss_pred chhhHHHHHHhHHHHHHHHcCccc-ceEEEEecCCCCCceeeeeehhhhhCCCCceeeeec
Confidence 468899999999999999999875 3333 99999999 885555 46555443
No 147
>PRK07538 hypothetical protein; Provisional
Probab=32.77 E-value=58 Score=25.41 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=18.9
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-.|.++ .+ ++.|++++||=
T Consensus 8 aG~aGl~~A~~L~~~G~~v~v~E 30 (413)
T PRK07538 8 GGIGGLTLALTLHQRGIEVVVFE 30 (413)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEE
Confidence 99999999 88 99999988874
No 148
>PRK06185 hypothetical protein; Provisional
Probab=32.43 E-value=64 Score=24.92 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=20.2
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|-.|.++ +. +..|++++|+=..
T Consensus 14 gG~~Gl~~A~~La~~G~~v~liE~~ 38 (407)
T PRK06185 14 GGPAGMMLGLLLARAGVDVTVLEKH 38 (407)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEecC
Confidence 99999999 88 9999999887644
No 149
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=32.14 E-value=1.3e+02 Score=23.22 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=25.9
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
.|.-|+.. .+ +.+|...+|++ +.+++|+++.+
T Consensus 177 aGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~ 210 (350)
T COG1063 177 AGPIGLLAIALAKLLGASVVIVV--DRSPERLELAK 210 (350)
T ss_pred CCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHH
Confidence 99999987 66 99999999888 45677777654
No 150
>PRK09414 glutamate dehydrogenase; Provisional
Probab=31.96 E-value=1.8e+02 Score=23.90 Aligned_cols=44 Identities=11% Similarity=-0.090 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCCC-CCCeEe----cchHHHHH-HH-HHcCCcEEEEec
Q 033926 50 RIAYSMIKDAEDKGLI-TPGKVF----NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 50 R~a~~~l~~a~~~g~~-~~g~~v----sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
||+...+..+.+.... -.|.++ .||-|..+ .. ..+|.+++.+.+
T Consensus 213 ~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 213 YGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred HHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 6777777776554322 234444 99999999 77 889988887754
No 151
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=31.71 E-value=1.4e+02 Score=23.38 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHcCCCCCCeEe----cchHHHHH-HH-HHcCCcEEEEecCC--CCHHHHhh
Q 033926 50 RIAYSMIKDAEDKGLITPGKVF----NGNSPILK-LI-NHKNYAMNSVFLFS--VNVNNFNQ 103 (108)
Q Consensus 50 R~a~~~l~~a~~~g~~~~g~~v----sGN~g~al-~~-~~~G~~~~ivvp~~--~~~~k~~~ 103 (108)
|+.+..+..|..++.. -.+.+ .++.|.-+ -. ..+|++++++++.. ...+|++.
T Consensus 141 RvVl~~L~~Aa~~~~~-F~V~vTEsrPd~sG~lm~~~L~~~~IPvtlvlDSaVgyvMe~vD~ 201 (313)
T KOG1466|consen 141 RVVLEVLLTAAQNKKR-FRVYVTESRPDGSGKLMAKELKKLGIPVTLVLDSAVGYVMERVDL 201 (313)
T ss_pred HHHHHHHHHHHhcCce-EEEEEecCCCCCchhHHHHHHHhcCCCeEEEehhhHHHHHhhccE
Confidence 7777778777766532 11222 45555555 55 88999999999874 33444443
No 152
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=31.64 E-value=1.3e+02 Score=22.36 Aligned_cols=42 Identities=19% Similarity=0.006 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHc-CCC-CCCeEe----cchHHHHH-HH-HHcCCcEEEE
Q 033926 50 RIAYSMIKDAEDK-GLI-TPGKVF----NGNSPILK-LI-NHKNYAMNSV 91 (108)
Q Consensus 50 R~a~~~l~~a~~~-g~~-~~g~~v----sGN~g~al-~~-~~~G~~~~iv 91 (108)
+|+...++.+.+. +.. -.|.++ .||-|..+ .. ...|.+++.+
T Consensus 12 ~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~v 61 (244)
T PF00208_consen 12 YGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAV 61 (244)
T ss_dssp HHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence 5667777776665 322 123433 99999999 77 8889888777
No 153
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=31.47 E-value=65 Score=24.61 Aligned_cols=23 Identities=9% Similarity=-0.090 Sum_probs=19.5
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|-.|.++ +. ++.|++++|+=..
T Consensus 13 gG~aGl~~A~~L~~~G~~v~v~E~~ 37 (388)
T PRK07608 13 GGLVGASLALALAQSGLRVALLAPR 37 (388)
T ss_pred cCHHHHHHHHHHHhCCCeEEEEecC
Confidence 99999999 88 9999998877543
No 154
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=31.44 E-value=57 Score=24.85 Aligned_cols=23 Identities=9% Similarity=-0.042 Sum_probs=19.9
Q ss_pred cchHHHHH-HH-HHcC-CcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKN-YAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G-~~~~ivvp~ 94 (108)
+|-.|.++ .+ ++.| ++++|+=-.
T Consensus 7 aG~aGl~~A~~L~~~G~~~v~v~E~~ 32 (382)
T TIGR01984 7 GGLVGLSLALALSRLGKIKIALIEAN 32 (382)
T ss_pred ccHHHHHHHHHHhcCCCceEEEEeCC
Confidence 99999999 88 9999 999887543
No 155
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=31.19 E-value=70 Score=25.67 Aligned_cols=21 Identities=10% Similarity=0.227 Sum_probs=18.8
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|..|++. .. ++.|++++|+=
T Consensus 9 aG~~GL~aa~~La~~G~~v~vlE 31 (492)
T TIGR02733 9 AGIAGLTAAALLAKRGYRVTLLE 31 (492)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEe
Confidence 99999999 77 99999998884
No 156
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.91 E-value=67 Score=24.01 Aligned_cols=23 Identities=4% Similarity=-0.068 Sum_probs=20.5
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|..|.++ .. +..|++++++-++
T Consensus 11 aG~mG~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 11 AGVLGSQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred CCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 99999999 88 9999999988755
No 157
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=30.62 E-value=1.8e+02 Score=22.55 Aligned_cols=27 Identities=11% Similarity=-0.095 Sum_probs=24.0
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecCCCCH
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLFSVNV 98 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~~~~~ 98 (108)
.+|.+.|+ .+ +.+|+.++++.|...++
T Consensus 162 ~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~ 190 (311)
T PRK14804 162 HNNVVNSLIGITAALGIHLTLVTPIAAKE 190 (311)
T ss_pred CCcHHHHHHHHHHHcCCEEEEECCCCccH
Confidence 78999999 88 99999999999998653
No 158
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=30.23 E-value=66 Score=24.57 Aligned_cols=22 Identities=9% Similarity=0.012 Sum_probs=19.3
Q ss_pred cchHHHHH-HH-HHc---CCcEEEEec
Q 033926 72 NGNSPILK-LI-NHK---NYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~---G~~~~ivvp 93 (108)
+|-.|.++ ++ ++. |++++|+=.
T Consensus 11 aG~aGl~~A~~L~~~~~~G~~v~v~E~ 37 (395)
T PRK05732 11 GGMAGATLALALSRLSHGGLPVALIEA 37 (395)
T ss_pred cCHHHHHHHHHhhhcccCCCEEEEEeC
Confidence 99999999 88 888 999888764
No 159
>PRK06126 hypothetical protein; Provisional
Probab=30.19 E-value=77 Score=25.83 Aligned_cols=21 Identities=14% Similarity=-0.012 Sum_probs=19.4
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-.|.++ ++ ++.|++++||=
T Consensus 15 aGpaGL~~Al~La~~G~~v~viE 37 (545)
T PRK06126 15 GGPVGLALALDLGRRGVDSILVE 37 (545)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEe
Confidence 99999999 88 99999998885
No 160
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=30.16 E-value=66 Score=25.83 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=19.1
Q ss_pred Ee-cchHHHHH-HH-HHcCCcEEEE
Q 033926 70 VF-NGNSPILK-LI-NHKNYAMNSV 91 (108)
Q Consensus 70 ~v-sGN~g~al-~~-~~~G~~~~iv 91 (108)
+| +|-.|++. .. ++.|++++|+
T Consensus 3 VIGaG~~GL~aA~~La~~G~~V~Vl 27 (502)
T TIGR02734 3 VIGAGFGGLALAIRLAAAGIPVTVV 27 (502)
T ss_pred EECcCHHHHHHHHHHHhCCCcEEEE
Confidence 45 99999999 77 9999999887
No 161
>PLN02591 tryptophan synthase
Probab=29.86 E-value=2.4e+02 Score=21.17 Aligned_cols=54 Identities=7% Similarity=-0.001 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCCCCCeEe---cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 50 RIAYSMIKDAEDKGLITPGKVF---NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 50 R~a~~~l~~a~~~g~~~~g~~v---sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
+|.-..+..+.+.|.. |..+ .=....-+ -. +.+|+..+.+++.+++++++..+-
T Consensus 93 ~G~~~F~~~~~~aGv~--GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia 151 (250)
T PLN02591 93 RGIDKFMATIKEAGVH--GLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIA 151 (250)
T ss_pred hHHHHHHHHHHHcCCC--EEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH
Confidence 5667778888888843 5554 22333344 45 899999999998888998877653
No 162
>PRK07045 putative monooxygenase; Reviewed
Probab=29.30 E-value=73 Score=24.50 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=19.0
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-.|.++ .+ ++.|++++||=
T Consensus 13 gGpaGl~~A~~L~~~G~~v~v~E 35 (388)
T PRK07045 13 SGIAGVALAHLLGARGHSVTVVE 35 (388)
T ss_pred CcHHHHHHHHHHHhcCCcEEEEe
Confidence 99999999 88 99999988874
No 163
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=29.22 E-value=2.2e+02 Score=21.47 Aligned_cols=39 Identities=8% Similarity=0.096 Sum_probs=22.6
Q ss_pred CCCCCCeEe----cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhhc
Q 033926 63 GLITPGKVF----NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQA 104 (108)
Q Consensus 63 g~~~~g~~v----sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~~ 104 (108)
..+.+|.++ .|..|.++ .+ +.+|.++++ + ..+++|++.+
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~-~--~~~~~~~~~~ 206 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVA-I--DIDPEKLEMM 206 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEE-E--cCCHHHHHHH
Confidence 335555543 77777777 56 888986433 3 2245555443
No 164
>PRK07233 hypothetical protein; Provisional
Probab=29.02 E-value=76 Score=24.43 Aligned_cols=23 Identities=4% Similarity=-0.065 Sum_probs=19.6
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|-.|++. +. ++.|++++|+=-.
T Consensus 7 aGiaGL~aA~~L~~~G~~v~vlE~~ 31 (434)
T PRK07233 7 GGIAGLAAAYRLAKRGHEVTVFEAD 31 (434)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEEeC
Confidence 99999999 88 8899998887443
No 165
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=28.99 E-value=84 Score=25.71 Aligned_cols=22 Identities=5% Similarity=-0.090 Sum_probs=19.7
Q ss_pred cchHHHHH-HH-HHcCCcEEEEec
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
+|-.|+++ +. ++.|++++|+=.
T Consensus 31 aGpaGl~lA~~L~~~G~~v~viE~ 54 (547)
T PRK08132 31 AGPVGLALAIDLAQQGVPVVLLDD 54 (547)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEeC
Confidence 99999999 88 999999988743
No 166
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=28.75 E-value=90 Score=23.85 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=33.9
Q ss_pred CCeEe---cchHHHHH-HHHHcCCcEEEEecCCCCHHHHhhcccC
Q 033926 67 PGKVF---NGNSPILK-LINHKNYAMNSVFLFSVNVNNFNQAHPA 107 (108)
Q Consensus 67 ~g~~v---sGN~g~al-~~~~~G~~~~ivvp~~~~~~k~~~~~~~ 107 (108)
|+..+ ...--+|+ -|+.+|+|++.+++.+++|+-++..=|+
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dpd~VD~~IP~ 201 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDPDGVDYVIPG 201 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCCccCceeecC
Confidence 66543 77778888 7799999999999999999988776664
No 167
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=28.52 E-value=74 Score=28.52 Aligned_cols=21 Identities=10% Similarity=0.294 Sum_probs=19.6
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-+|++. +. ++.|+++|||=
T Consensus 314 sGPAGLsaA~~Lar~G~~VtVfE 336 (944)
T PRK12779 314 SGPSGLINAYLLAVEGFPVTVFE 336 (944)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEe
Confidence 99999999 88 99999999984
No 168
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=28.08 E-value=83 Score=24.71 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=19.7
Q ss_pred cchHHHHH-HH-HHcC--------CcEEEEec
Q 033926 72 NGNSPILK-LI-NHKN--------YAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G--------~~~~ivvp 93 (108)
+||+|.|+ .. +..| .+++++.-
T Consensus 7 aG~wGtALA~~la~ng~~~~~~~~~~V~lw~~ 38 (342)
T TIGR03376 7 SGNWGTAIAKIVAENARALPELFEESVRMWVF 38 (342)
T ss_pred cCHHHHHHHHHHHHcCCcccccCCceEEEEEe
Confidence 99999999 87 8878 89999975
No 169
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=28.07 E-value=82 Score=23.86 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=20.0
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|-.|.++ +. ++.|.+++|+=..
T Consensus 11 gGi~G~s~A~~L~~~g~~V~lie~~ 35 (376)
T PRK11259 11 LGSMGSAAGYYLARRGLRVLGLDRF 35 (376)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEecc
Confidence 99999999 88 8899998887644
No 170
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=28.04 E-value=72 Score=26.91 Aligned_cols=22 Identities=9% Similarity=0.061 Sum_probs=19.5
Q ss_pred cchHHHHH-HH-HHcCCcEEEEec
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
+|-+|.++ +. +..|.+++|+=.
T Consensus 268 aGIaG~s~A~~La~~G~~V~VlE~ 291 (662)
T PRK01747 268 GGIAGAALALALARRGWQVTLYEA 291 (662)
T ss_pred ccHHHHHHHHHHHHCCCeEEEEec
Confidence 99999999 99 999999887753
No 171
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=27.52 E-value=87 Score=24.26 Aligned_cols=21 Identities=10% Similarity=0.041 Sum_probs=18.9
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-.|.++ .. ++.|++++|+=
T Consensus 10 aGpaGl~~A~~L~~~G~~v~v~E 32 (392)
T PRK08243 10 AGPAGLLLGQLLHLAGIDSVVLE 32 (392)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999 88 99999988774
No 172
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=27.22 E-value=85 Score=25.10 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=19.2
Q ss_pred cchHHHHHHHHHcCCcEEEEecCC
Q 033926 72 NGNSPILKLINHKNYAMNSVFLFS 95 (108)
Q Consensus 72 sGN~g~al~~~~~G~~~~ivvp~~ 95 (108)
.|.+.+|+.|+.+|+|+.|+.|.+
T Consensus 259 iGTy~lA~~Ak~~~vPfyV~Ap~~ 282 (356)
T PRK08334 259 IGTYTLAVLAKEHGIPFFTVAPLS 282 (356)
T ss_pred hhHHHHHHHHHHhCCCEEEEcccC
Confidence 677777766689999999999843
No 173
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=27.21 E-value=80 Score=24.01 Aligned_cols=23 Identities=9% Similarity=-0.090 Sum_probs=20.4
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
.|+.|.++ .. ...|++++++-..
T Consensus 12 ~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 12 AGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 99999999 77 8899999988764
No 174
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=27.20 E-value=1.2e+02 Score=22.61 Aligned_cols=29 Identities=7% Similarity=0.037 Sum_probs=21.4
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhh
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQ 103 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~ 103 (108)
.|+.|.++ .. +..|++++++- .++++.+.
T Consensus 7 ~G~mG~~iA~~l~~~G~~V~~~d---r~~~~~~~ 37 (291)
T TIGR01505 7 LGIMGSPMSINLAKAGYQLHVTT---IGPEVADE 37 (291)
T ss_pred ecHHHHHHHHHHHHCCCeEEEEc---CCHHHHHH
Confidence 89999999 77 88899888773 23455443
No 175
>PF07997 DUF1694: Protein of unknown function (DUF1694); InterPro: IPR012543 This family contains many hypothetical proteins.; PDB: 2OHW_A.
Probab=27.13 E-value=1.9e+02 Score=19.37 Aligned_cols=83 Identities=17% Similarity=0.091 Sum_probs=38.7
Q ss_pred hHHHHhcccCCCceeEccCccCCCC---ceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe--cchHHHHH--
Q 033926 7 IKKDVTELIGHTPMVYLNNVVDGCV---AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK-- 79 (108)
Q Consensus 7 ~~~~i~~~v~~TPLv~~~~l~~~~~---~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v--sGN~g~al-- 79 (108)
+-+.+...+.-||-+.-+.-...+| -+|++-+-. .-......+..+..++.. .++..+ +|+...+.
T Consensus 6 l~~~l~~g~~G~p~lkPDEqr~yLGtfrERV~lalt~----~q~~~~~~~~~~~~~l~~---~~~~~l~ing~l~~~~~~ 78 (120)
T PF07997_consen 6 LEKRLQQGAYGTPELKPDEQRRYLGTFRERVILALTK----EQVEEPDIYPEFEQALKD---YPNYKLKINGNLDYSFQS 78 (120)
T ss_dssp HHHHHHTT--S--SSHHHHHHHTTT--GGGEEEEEEH----HHHTSSS--HHHHHHHHC----SSEEEEEETTS-HHHHH
T ss_pred HHHHHHHhccCCCCCCHHHHHHhcchHHhHhhheecH----HHHhChhHHHHHHHHHhh---CCCeEEEEcCCCCHHHHH
Confidence 4455666665577765432111223 355555521 123334556677777765 234444 99988765
Q ss_pred -HH---HHcCCcEEEEecCCC
Q 033926 80 -LI---NHKNYAMNSVFLFSV 96 (108)
Q Consensus 80 -~~---~~~G~~~~ivvp~~~ 96 (108)
|. ...|+++|||-....
T Consensus 79 ~YiklA~~~~~~fTiv~~~~~ 99 (120)
T PF07997_consen 79 KYIKLANKHGIPFTIVNDPEY 99 (120)
T ss_dssp HHHHHHHHTT--EEEE---SS
T ss_pred HHHHHHHHcCCCEEEeCCCCc
Confidence 33 778999999987654
No 176
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=26.88 E-value=89 Score=24.67 Aligned_cols=24 Identities=13% Similarity=-0.117 Sum_probs=18.6
Q ss_pred cchHHHHHHHHHcCCcEEEEecCC
Q 033926 72 NGNSPILKLINHKNYAMNSVFLFS 95 (108)
Q Consensus 72 sGN~g~al~~~~~G~~~~ivvp~~ 95 (108)
.|.+.+|+.|+.+|+|+.++.|.+
T Consensus 236 iGT~~lAl~Ak~~~VPfyV~a~~~ 259 (329)
T PRK06371 236 IGTYEKAVLAKVNGIPFYVAAPGS 259 (329)
T ss_pred hhHHHHHHHHHHcCCCEEEecccc
Confidence 566666655589999999999853
No 177
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=26.83 E-value=2.5e+02 Score=20.91 Aligned_cols=30 Identities=13% Similarity=0.027 Sum_probs=19.8
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhh
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQ 103 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~ 103 (108)
.|.-|+.. .+ +.+|.+.++++.. .++|++.
T Consensus 153 ~G~vG~~a~q~ak~~G~~~v~~~~~--~~~rl~~ 184 (308)
T TIGR01202 153 HGTLGRLLARLTKAAGGSPPAVWET--NPRRRDG 184 (308)
T ss_pred CCHHHHHHHHHHHHcCCceEEEeCC--CHHHHHh
Confidence 77777766 55 8889987776643 4455543
No 178
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=26.73 E-value=73 Score=24.60 Aligned_cols=24 Identities=4% Similarity=-0.165 Sum_probs=22.4
Q ss_pred chHHHHH-HH-HHcCCcEEEEecCCC
Q 033926 73 GNSPILK-LI-NHKNYAMNSVFLFSV 96 (108)
Q Consensus 73 GN~g~al-~~-~~~G~~~~ivvp~~~ 96 (108)
+|.+.|+ .+ +.+|++++++.|+..
T Consensus 162 ~~v~~Sl~~~~a~~g~~v~~~~P~~~ 187 (301)
T TIGR00670 162 GRTVHSLAEALTRFGVEVYLISPEEL 187 (301)
T ss_pred CcHHHHHHHHHHHcCCEEEEECCccc
Confidence 7999999 88 999999999999985
No 179
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=26.68 E-value=1.7e+02 Score=22.44 Aligned_cols=20 Identities=0% Similarity=-0.062 Sum_probs=9.2
Q ss_pred chHHHHH-HH-HHcCCcEEEEe
Q 033926 73 GNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 73 GN~g~al-~~-~~~G~~~~ivv 92 (108)
.+-|..+ .. ...|++++++.
T Consensus 152 ~~~G~~~a~~L~~~gI~vtlI~ 173 (301)
T TIGR00511 152 RKQGHITAKELRDYGIPVTLIV 173 (301)
T ss_pred cchHHHHHHHHHHCCCCEEEEe
Confidence 3344333 44 55555555443
No 180
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=26.67 E-value=73 Score=25.23 Aligned_cols=22 Identities=9% Similarity=0.006 Sum_probs=18.9
Q ss_pred cchHHHHH-HH-HH----cCCcEEEEec
Q 033926 72 NGNSPILK-LI-NH----KNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~----~G~~~~ivvp 93 (108)
+|-.|.++ ++ ++ .|++++|+=.
T Consensus 8 aGp~Gl~~A~~La~~~~~~G~~v~viE~ 35 (437)
T TIGR01989 8 GGPVGLALAAALGNNPLTKDLKVLLLDA 35 (437)
T ss_pred CcHHHHHHHHHHhcCcccCCCeEEEEeC
Confidence 99999999 88 77 7999888854
No 181
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=26.59 E-value=89 Score=23.35 Aligned_cols=23 Identities=13% Similarity=0.030 Sum_probs=19.5
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|+.|.++ .. +..|++++++-.+
T Consensus 11 aG~mG~~iA~~la~~G~~V~l~d~~ 35 (291)
T PRK06035 11 SGVMGQGIAQVFARTGYDVTIVDVS 35 (291)
T ss_pred ccHHHHHHHHHHHhcCCeEEEEeCC
Confidence 99999999 88 9999998877543
No 182
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=26.46 E-value=1.3e+02 Score=24.06 Aligned_cols=47 Identities=2% Similarity=-0.195 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHcCCCCCCeEe----cchHHHHH--HH-HHcCCcEEEEecCC
Q 033926 48 KDRIAYSMIKDAEDKGLITPGKVF----NGNSPILK--LI-NHKNYAMNSVFLFS 95 (108)
Q Consensus 48 K~R~a~~~l~~a~~~g~~~~g~~v----sGN~g~al--~~-~~~G~~~~ivvp~~ 95 (108)
-.+.|...|..|.++|... -+.+ -.+-|..+ +. ...|++++++.+..
T Consensus 176 ~~gTal~vi~~A~~~gk~~-~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa 229 (356)
T PRK08334 176 HLGTVGAVLRVMHKDGTLK-LLWVDETRPVLQGARLSAWEYHYDGIPLKLISDNM 229 (356)
T ss_pred ccchHHHHHHHHHHcCCeE-EEEECCCCchhhHHHHHHHHHHHCCCCEEEEehhH
Confidence 3477888999998887532 1122 46677666 45 88899999887664
No 183
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=26.31 E-value=2.9e+02 Score=21.37 Aligned_cols=34 Identities=9% Similarity=-0.055 Sum_probs=25.5
Q ss_pred CCCCCeEe--cchHHHHH-HH-HHcCCcEEEEecCCCC
Q 033926 64 LITPGKVF--NGNSPILK-LI-NHKNYAMNSVFLFSVN 97 (108)
Q Consensus 64 ~~~~g~~v--sGN~g~al-~~-~~~G~~~~ivvp~~~~ 97 (108)
..+|+.++ +|..+.-. ++ +.+|+++.+.-+...+
T Consensus 89 ~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~ 126 (352)
T PRK12446 89 KLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTP 126 (352)
T ss_pred hcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCc
Confidence 35687777 66666666 77 9999999888776544
No 184
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=26.21 E-value=89 Score=25.54 Aligned_cols=22 Identities=5% Similarity=-0.244 Sum_probs=19.1
Q ss_pred cchHHHHH-HH-HHcCCcEEEEec
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
+|-+|.++ +- +..|++++++=-
T Consensus 14 GGi~G~~~A~~la~rGl~V~LvEk 37 (508)
T PRK12266 14 GGINGAGIARDAAGRGLSVLLCEQ 37 (508)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEec
Confidence 99999999 88 999999877743
No 185
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.90 E-value=2.7e+02 Score=20.95 Aligned_cols=53 Identities=8% Similarity=0.029 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCCCCCeEe---cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 51 IAYSMIKDAEDKGLITPGKVF---NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 51 ~a~~~l~~a~~~g~~~~g~~v---sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
|.-..+..+.+.|.. |..+ .=.....+ -+ +.+|+..+.+++.+++++++..+.
T Consensus 105 G~e~f~~~~~~aGvd--GviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~ 162 (258)
T PRK13111 105 GVERFAADAAEAGVD--GLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIA 162 (258)
T ss_pred CHHHHHHHHHHcCCc--EEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH
Confidence 555677888888743 5555 22344445 55 889999999999999998887653
No 186
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=25.65 E-value=94 Score=23.81 Aligned_cols=23 Identities=9% Similarity=0.044 Sum_probs=19.9
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|-.|.++ +. +..|++++|+=+.
T Consensus 7 aG~AGl~~A~~la~~g~~v~liE~~ 31 (388)
T TIGR01790 7 GGPAGLAIALELARPGLRVQLIEPH 31 (388)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEccC
Confidence 89999999 88 8889999888755
No 187
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=25.58 E-value=95 Score=25.36 Aligned_cols=23 Identities=4% Similarity=-0.039 Sum_probs=20.1
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|-.|.++ .. ++.|++++|+=-.
T Consensus 18 aGp~Gl~lA~~L~~~G~~v~v~Er~ 42 (538)
T PRK06183 18 AGPVGLTLANLLGQYGVRVLVLERW 42 (538)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEecC
Confidence 99999999 88 9999999987543
No 188
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=25.51 E-value=1.2e+02 Score=22.24 Aligned_cols=23 Identities=13% Similarity=-0.129 Sum_probs=19.9
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|+.|..+ .. +..|.+++++...
T Consensus 8 ~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 8 AGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEECC
Confidence 89999999 87 8889999988863
No 189
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=25.49 E-value=92 Score=25.76 Aligned_cols=22 Identities=9% Similarity=-0.223 Sum_probs=19.1
Q ss_pred cchHHHHH-HH-HHcCCcEEEEec
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
+|-+|.++ +- +..|++++++=-
T Consensus 14 GGi~G~~iA~~La~rG~~V~LlEk 37 (546)
T PRK11101 14 GGATGAGIARDCALRGLRCILVER 37 (546)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEEC
Confidence 99999999 88 999999887753
No 190
>PRK06834 hypothetical protein; Provisional
Probab=25.42 E-value=93 Score=25.34 Aligned_cols=24 Identities=8% Similarity=-0.097 Sum_probs=20.8
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecCC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLFS 95 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~~ 95 (108)
+|-.|.++ +. ++.|++++|+=...
T Consensus 11 aGp~Gl~lA~~La~~G~~v~vlEr~~ 36 (488)
T PRK06834 11 GGPTGLMLAGELALAGVDVAIVERRP 36 (488)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 99999999 88 99999998886443
No 191
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=25.42 E-value=74 Score=23.38 Aligned_cols=23 Identities=4% Similarity=-0.110 Sum_probs=16.9
Q ss_pred chHHHHH-HH-HHcCCcEEEEecCC
Q 033926 73 GNSPILK-LI-NHKNYAMNSVFLFS 95 (108)
Q Consensus 73 GN~g~al-~~-~~~G~~~~ivvp~~ 95 (108)
|....+| -+ +..|++++|++|.-
T Consensus 19 gdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 19 GDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred hHHHHHHHHHHHhcCCeEEEEEccc
Confidence 4555667 77 99999999999975
No 192
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=25.38 E-value=1.1e+02 Score=24.50 Aligned_cols=21 Identities=5% Similarity=0.156 Sum_probs=16.8
Q ss_pred cchHHHHH-HH-HHc--CCcEEEEe
Q 033926 72 NGNSPILK-LI-NHK--NYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~--G~~~~ivv 92 (108)
+|-+|++. +. +.. |.+++|+=
T Consensus 32 gGi~Gls~A~~La~~~~G~~V~vlE 56 (460)
T TIGR03329 32 GGFTGLWTAIMIKQQRPALDVLVLE 56 (460)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 89999999 77 776 88886653
No 193
>PRK10358 putative rRNA methylase; Provisional
Probab=25.28 E-value=96 Score=21.50 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=19.9
Q ss_pred cchHHHHH-HHHHcCCcEEEEecC
Q 033926 72 NGNSPILK-LINHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~~~~G~~~~ivvp~ 94 (108)
-||.|.-+ .+..+|++.+++-|.
T Consensus 12 PgNlGti~Rta~a~G~~~viv~~~ 35 (157)
T PRK10358 12 PPNTGNIIRLCANTGFRLHIIEPM 35 (157)
T ss_pred cChHHHHHHHHHHhCCEEEEECCC
Confidence 79999988 778899998888774
No 194
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=25.25 E-value=1.7e+02 Score=22.57 Aligned_cols=26 Identities=0% Similarity=-0.201 Sum_probs=23.1
Q ss_pred chHHHHH-HH-HHcCCcEEEEecCCCCH
Q 033926 73 GNSPILK-LI-NHKNYAMNSVFLFSVNV 98 (108)
Q Consensus 73 GN~g~al-~~-~~~G~~~~ivvp~~~~~ 98 (108)
+|.+.|+ .+ +.+|+.++++.|+...+
T Consensus 168 ~~v~~Sl~~~~~~~g~~~~~~~P~~~~~ 195 (305)
T PRK00856 168 SRVARSNIQALTRLGAEVRLIAPPTLLP 195 (305)
T ss_pred CcHHHHHHHHHHHcCCEEEEECCcccCc
Confidence 7999999 88 99999999999998643
No 195
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=25.13 E-value=98 Score=28.22 Aligned_cols=23 Identities=4% Similarity=-0.045 Sum_probs=20.5
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|..|++. +. ++.|++++||=..
T Consensus 547 gGPAGLsAA~~Lar~G~~VtV~Ek~ 571 (1019)
T PRK09853 547 AGPAGLAAAYFLARAGHPVTVFERE 571 (1019)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEecc
Confidence 99999999 88 9999999998644
No 196
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=24.86 E-value=1.1e+02 Score=23.29 Aligned_cols=22 Identities=5% Similarity=0.060 Sum_probs=18.4
Q ss_pred cchHHHHH-HH-HHcCCcEEEEec
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
+|-.|.+. +. +..|.+++|+=.
T Consensus 8 ~Gi~G~s~A~~L~~~G~~V~vle~ 31 (365)
T TIGR03364 8 AGILGLAHAYAAARRGLSVTVIER 31 (365)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeC
Confidence 89999999 88 888999777643
No 197
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=24.78 E-value=1.3e+02 Score=23.31 Aligned_cols=12 Identities=0% Similarity=-0.114 Sum_probs=6.3
Q ss_pred HHcCCcEEEEec
Q 033926 82 NHKNYAMNSVFL 93 (108)
Q Consensus 82 ~~~G~~~~ivvp 93 (108)
+..|++++++.+
T Consensus 175 ~~~gI~vtlI~D 186 (303)
T TIGR00524 175 MQDGIDVTLITD 186 (303)
T ss_pred HHCCCCEEEECh
Confidence 555555555543
No 198
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=24.63 E-value=1e+02 Score=24.38 Aligned_cols=22 Identities=5% Similarity=0.004 Sum_probs=18.7
Q ss_pred cchHHHHH-HH-HHcCCcEEEEec
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
+|..|.+. +. +.+|.+++++=.
T Consensus 11 gGpaGl~aA~~la~~g~~V~lie~ 34 (441)
T PRK08010 11 FGKAGKTLAVTLAKAGWRVALIEQ 34 (441)
T ss_pred CCHhHHHHHHHHHHCCCeEEEEcC
Confidence 99999999 77 899999777653
No 199
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=24.54 E-value=1e+02 Score=23.89 Aligned_cols=21 Identities=10% Similarity=-0.111 Sum_probs=18.3
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-.|.++ +. +..|++++++=
T Consensus 8 aGpAG~~aA~~La~~G~~V~l~E 30 (388)
T TIGR02023 8 GGPSGATAAETLARAGIETILLE 30 (388)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEE
Confidence 99999999 88 99999987664
No 200
>PLN02885 nicotinate phosphoribosyltransferase
Probab=24.21 E-value=3.2e+02 Score=23.18 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=33.6
Q ss_pred HHcCCCCCCeEe-cchHHHHH-HH-HHc----------CC-cEEEEecCCCCHHHHhhcc
Q 033926 60 EDKGLITPGKVF-NGNSPILK-LI-NHK----------NY-AMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 60 ~~~g~~~~g~~v-sGN~g~al-~~-~~~----------G~-~~~ivvp~~~~~~k~~~~~ 105 (108)
.+.|..-.|+.+ ||+.+.-- -+ +.+ |. ++.||+..+.+.+++..++
T Consensus 307 ~~~g~~~~GVRlDSGDl~~ls~~~r~~~~~~~~~l~~~g~~~~kIv~Sn~Lde~~i~~L~ 366 (545)
T PLN02885 307 NDLGYKAVGIRLDSGDLAYLSLEARKFFRTIEEELGVPGFGKMSITASNDINEETLDALN 366 (545)
T ss_pred HhcCcccCeeEECCCChHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCHHHHHHHH
Confidence 335655567788 99997643 44 444 65 6669999999999998775
No 201
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=24.21 E-value=1e+02 Score=25.19 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=20.1
Q ss_pred cchHHHHH-HH-HHcCCcEEEEec
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
+|..|++. .. +..|++++++-+
T Consensus 219 gGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 219 GGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEec
Confidence 99999999 77 999999999964
No 202
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=24.05 E-value=3.4e+02 Score=21.29 Aligned_cols=40 Identities=20% Similarity=0.112 Sum_probs=24.2
Q ss_pred CCCCCCeEe----cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhhc
Q 033926 63 GLITPGKVF----NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQA 104 (108)
Q Consensus 63 g~~~~g~~v----sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~~ 104 (108)
..+.+|..+ +|-.|+.+ .+ +.+|.+.+++.. .+++|.+..
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d--~~~~r~~~a 226 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGD--LNPARLAQA 226 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHH
Confidence 345555543 77777777 55 888998766442 235555543
No 203
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=23.99 E-value=1e+02 Score=24.37 Aligned_cols=23 Identities=4% Similarity=-0.136 Sum_probs=19.2
Q ss_pred cchHHHHHHHHHcCCcEEEEecC
Q 033926 72 NGNSPILKLINHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al~~~~~G~~~~ivvp~ 94 (108)
.|.+.+|+.|+.+|+|+.|+.|.
T Consensus 246 iGT~~lAl~Ak~~~vPfyV~a~~ 268 (344)
T PRK05720 246 IGTYQLAIAAKYHGVPFYVAAPS 268 (344)
T ss_pred hhHHHHHHHHHHhCCCEEEeccc
Confidence 67777776669999999999986
No 204
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=23.90 E-value=2.9e+02 Score=20.13 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=16.0
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|..|.++ .. +.+|+++++..
T Consensus 156 ~g~vg~~~~~~a~~~g~~v~~~~ 178 (326)
T cd08289 156 TGGVGSLAVSILAKLGYEVVAST 178 (326)
T ss_pred CchHHHHHHHHHHHCCCeEEEEe
Confidence 58889888 66 99999865543
No 205
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=23.89 E-value=1.1e+02 Score=22.99 Aligned_cols=25 Identities=4% Similarity=0.058 Sum_probs=18.9
Q ss_pred CeEe--cchHHHHH-HH-HHcCCcEEEEe
Q 033926 68 GKVF--NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 68 g~~v--sGN~g~al-~~-~~~G~~~~ivv 92 (108)
++.| +|-.|++. +. +..|+++.++=
T Consensus 19 DV~IVGaGpaGl~aA~~La~~g~kV~v~E 47 (230)
T PF01946_consen 19 DVAIVGAGPAGLTAAYYLAKAGLKVAVIE 47 (230)
T ss_dssp SEEEE--SHHHHHHHHHHHHHTS-EEEEE
T ss_pred CEEEECCChhHHHHHHHHHHCCCeEEEEe
Confidence 3444 99999999 88 88899998874
No 206
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=23.59 E-value=1.1e+02 Score=25.09 Aligned_cols=22 Identities=5% Similarity=-0.058 Sum_probs=20.2
Q ss_pred cchHHHHH-HH-HHcCCcEEEEec
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
+|=.|..+ ++ ++.|+++++|-.
T Consensus 10 GGlAGleAAlaLAr~Gl~V~LiE~ 33 (436)
T PRK05335 10 AGLAGSEAAWQLAKRGVPVELYEM 33 (436)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEEc
Confidence 99999999 99 999999999973
No 207
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=23.56 E-value=1.1e+02 Score=24.18 Aligned_cols=22 Identities=5% Similarity=-0.171 Sum_probs=20.0
Q ss_pred cchHHHHH-HH-HHcCCcEEEEec
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
+|++|.|| .. +..|.+++++.=
T Consensus 9 aGswGTALA~~la~ng~~V~lw~r 32 (329)
T COG0240 9 AGSWGTALAKVLARNGHEVRLWGR 32 (329)
T ss_pred CChHHHHHHHHHHhcCCeeEEEec
Confidence 99999999 88 999999998873
No 208
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=23.56 E-value=98 Score=26.76 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=19.6
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-.|+++ .+ ++.|++++||=
T Consensus 89 gGIaGLalAlaL~r~Gi~V~V~E 111 (668)
T PLN02927 89 GGIGGLVFALAAKKKGFDVLVFE 111 (668)
T ss_pred CCHHHHHHHHHHHhcCCeEEEEe
Confidence 99999999 88 99999999985
No 209
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=23.48 E-value=1.1e+02 Score=23.93 Aligned_cols=21 Identities=10% Similarity=0.020 Sum_probs=17.7
Q ss_pred cchHHHHH-HH-HHcC-CcEEEEe
Q 033926 72 NGNSPILK-LI-NHKN-YAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G-~~~~ivv 92 (108)
+|-.|.++ .+ ++.| ++++||=
T Consensus 8 gGiaGla~A~~L~~~g~~~v~v~E 31 (414)
T TIGR03219 8 GGIAGVALALNLCKHSHLNVQLFE 31 (414)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEe
Confidence 89999999 88 8887 6888863
No 210
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=23.24 E-value=2.1e+02 Score=22.07 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=13.1
Q ss_pred cchHHHHH-HH---HHcCCcEEEEecCCCC
Q 033926 72 NGNSPILK-LI---NHKNYAMNSVFLFSVN 97 (108)
Q Consensus 72 sGN~g~al-~~---~~~G~~~~ivvp~~~~ 97 (108)
-||++..+ +. ...|.++.|++.++-|
T Consensus 127 ~~~S~tv~~~l~~A~~~~k~~~V~v~EsrP 156 (310)
T PRK08535 127 HCNSSAALSVIKTAHEQGKDIEVIATETRP 156 (310)
T ss_pred eCCcHHHHHHHHHHHHCCCeEEEEEecCCc
Confidence 44555444 32 2345556666665544
No 211
>PTZ00367 squalene epoxidase; Provisional
Probab=23.23 E-value=2.1e+02 Score=24.13 Aligned_cols=23 Identities=0% Similarity=-0.268 Sum_probs=20.5
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|-.|.++ .+ ++.|++++|+=..
T Consensus 41 aGiaGlalA~aLar~G~~V~VlEr~ 65 (567)
T PTZ00367 41 GSIAGPVLAKALSKQGRKVLMLERD 65 (567)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEccc
Confidence 99999999 88 9999999888754
No 212
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=23.00 E-value=1.1e+02 Score=27.81 Aligned_cols=23 Identities=4% Similarity=-0.048 Sum_probs=20.4
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|-.|++. +. ++.|++++||=+.
T Consensus 545 GGPAGLSAA~~LAr~G~~VTV~Ek~ 569 (1012)
T TIGR03315 545 AGPAGLSAGYFLARAGHPVTVFEKK 569 (1012)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEecc
Confidence 99999999 88 9999999998543
No 213
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=22.95 E-value=1.1e+02 Score=24.23 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=17.9
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-.|++. +. +..|.+++++=
T Consensus 12 ~G~aGl~AA~~aa~~G~~V~vlE 34 (466)
T PRK08274 12 GGNAALCAALAAREAGASVLLLE 34 (466)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEe
Confidence 99999998 77 88999887764
No 214
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=22.83 E-value=1.2e+02 Score=22.84 Aligned_cols=23 Identities=9% Similarity=0.004 Sum_probs=19.6
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
.|+.|.++ .. +..|++++++-+.
T Consensus 12 aG~mG~~iA~~l~~~g~~V~~~d~~ 36 (311)
T PRK06130 12 AGTMGSGIAALFARKGLQVVLIDVM 36 (311)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEECC
Confidence 99999999 77 8899998887543
No 215
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=22.75 E-value=3.2e+02 Score=20.19 Aligned_cols=32 Identities=9% Similarity=0.165 Sum_probs=22.0
Q ss_pred HcCCCCCCeEe-----cchHHHHH-HH-HHcCCcEEEEe
Q 033926 61 DKGLITPGKVF-----NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 61 ~~g~~~~g~~v-----sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+.+.+.+|..+ +|..|+++ .. +.+|.+++++.
T Consensus 171 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~ 209 (350)
T cd08274 171 ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVA 209 (350)
T ss_pred hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEe
Confidence 34445555543 58899888 66 99999965554
No 216
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=22.69 E-value=2.1e+02 Score=22.35 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCCCCCCeEe----cchHHHHH-HH-HHcCCcEEEEecCC
Q 033926 50 RIAYSMIKDAEDKGLITPGKVF----NGNSPILK-LI-NHKNYAMNSVFLFS 95 (108)
Q Consensus 50 R~a~~~l~~a~~~g~~~~g~~v----sGN~g~al-~~-~~~G~~~~ivvp~~ 95 (108)
+.+...|..|.+.|.. -.+.+ -++-|..+ -. +..|++++++++..
T Consensus 130 ~~v~~~l~~A~~~~k~-~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa 180 (301)
T COG1184 130 KTVLEVLKTAADRGKR-FKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSA 180 (301)
T ss_pred HHHHHHHHHhhhcCCc-eEEEEEcCCCcchHHHHHHHHHHcCCceEEEechH
Confidence 7788888888887642 11223 56667777 66 89999999888654
No 217
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=22.69 E-value=1.2e+02 Score=24.73 Aligned_cols=23 Identities=4% Similarity=-0.327 Sum_probs=19.3
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|-+|.++ +- +..|+++.++=-.
T Consensus 14 GGi~G~~~A~~la~rG~~V~LlEk~ 38 (502)
T PRK13369 14 GGINGAGIARDAAGRGLKVLLCEKD 38 (502)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEECC
Confidence 99999999 88 9999997776533
No 218
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=22.67 E-value=3e+02 Score=21.31 Aligned_cols=30 Identities=7% Similarity=-0.067 Sum_probs=19.9
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhhc
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQA 104 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~~ 104 (108)
+|..|.++ .. +.+|.+.+++. .+++|.+.+
T Consensus 199 ~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~ 230 (398)
T TIGR01751 199 AGGLGSYATQLARAGGGNPVAVV---SSPEKAEYC 230 (398)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHH
Confidence 48888888 66 99999865543 244555443
No 219
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=22.45 E-value=1.2e+02 Score=23.00 Aligned_cols=23 Identities=4% Similarity=-0.245 Sum_probs=20.5
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|+.|.++ .. ...|++++++-.+
T Consensus 12 ~G~~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 12 AGAWGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred ccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 99999999 88 9999999988754
No 220
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=22.42 E-value=1.2e+02 Score=23.90 Aligned_cols=21 Identities=5% Similarity=-0.004 Sum_probs=19.4
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-.|.+. ++ +..|+.++||=
T Consensus 9 aGiAGl~aA~~L~~aG~~vtV~e 31 (331)
T COG3380 9 AGIAGLAAAYALREAGREVTVFE 31 (331)
T ss_pred cchHHHHHHHHHHhcCcEEEEEE
Confidence 99999999 99 99999999984
No 221
>PRK07190 hypothetical protein; Provisional
Probab=22.35 E-value=1.1e+02 Score=24.89 Aligned_cols=21 Identities=10% Similarity=-0.016 Sum_probs=18.6
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-.|+.+ +. ++.|++++|+=
T Consensus 13 AGPaGL~lA~~Lar~Gi~V~llE 35 (487)
T PRK07190 13 AGPVGLMCAYLGQLCGLNTVIVD 35 (487)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999 88 99999987763
No 222
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=22.29 E-value=3.1e+02 Score=21.02 Aligned_cols=30 Identities=7% Similarity=0.004 Sum_probs=20.6
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhhc
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQA 104 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~~ 104 (108)
+|..|.++ .+ +.+|.+.+++. .+++|.+.+
T Consensus 203 ~g~iG~a~~~lak~~G~~vv~~~---~s~~~~~~~ 234 (393)
T cd08246 203 SGGLGSMAIQLARAAGANPVAVV---SSEEKAEYC 234 (393)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEe---CCHHHHHHH
Confidence 48888888 67 99999866554 245555544
No 223
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=22.26 E-value=1.1e+02 Score=25.86 Aligned_cols=21 Identities=10% Similarity=0.020 Sum_probs=19.2
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-.|++. +. ++.|++++||=
T Consensus 335 aGpAGLsaA~~L~~~G~~V~V~E 357 (654)
T PRK12769 335 AGPAGLACADVLARNGVAVTVYD 357 (654)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEe
Confidence 99999999 88 99999998884
No 224
>PLN02985 squalene monooxygenase
Probab=22.22 E-value=1.2e+02 Score=24.93 Aligned_cols=23 Identities=4% Similarity=-0.140 Sum_probs=20.1
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|-.|.++ ++ ++.|++++|+=..
T Consensus 51 AG~aGlalA~aLa~~G~~V~vlEr~ 75 (514)
T PLN02985 51 AGVGGSALAYALAKDGRRVHVIERD 75 (514)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEECc
Confidence 99999999 88 9999999887543
No 225
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=22.22 E-value=1.3e+02 Score=22.67 Aligned_cols=23 Identities=4% Similarity=-0.231 Sum_probs=20.4
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
.|..|.++ .. +..|++++++-+.
T Consensus 10 ~G~mG~~iA~~la~~G~~V~v~d~~ 34 (308)
T PRK06129 10 AGLIGRAWAIVFARAGHEVRLWDAD 34 (308)
T ss_pred ccHHHHHHHHHHHHCCCeeEEEeCC
Confidence 99999999 88 9999999988655
No 226
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=22.12 E-value=1.2e+02 Score=24.30 Aligned_cols=25 Identities=8% Similarity=-0.060 Sum_probs=19.2
Q ss_pred cchHHHHHHHHHcCCcEEEEecCCC
Q 033926 72 NGNSPILKLINHKNYAMNSVFLFSV 96 (108)
Q Consensus 72 sGN~g~al~~~~~G~~~~ivvp~~~ 96 (108)
.|.+.+|+.|+.+|+|+.++.|...
T Consensus 267 iGTy~lA~~Ak~~~vPfyV~ap~~k 291 (363)
T PRK05772 267 IGTFKEAVIAHELGIPFYALAPTST 291 (363)
T ss_pred hhhHHHHHHHHHhCCCEEEEccccc
Confidence 5666666555999999999998753
No 227
>KOG0815 consensus 60S acidic ribosomal protein P0 [Translation, ribosomal structure and biogenesis]
Probab=22.12 E-value=68 Score=24.25 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=50.9
Q ss_pred CcchhhhHHHHhcccCCCceeEc-cCccCCCCceEEEEeCCCCCCcchhhHHHHHHHHHHHHcCCCCCCe-Ee-cchHHH
Q 033926 1 MEDKCEIKKDVTELIGHTPMVYL-NNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK-VF-NGNSPI 77 (108)
Q Consensus 1 ~~~~~~~~~~i~~~v~~TPLv~~-~~l~~~~~~~i~~KlE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~-~v-sGN~g~ 77 (108)
|-++.++...+..+..+.|-++- ..+..+.-.-+|.|- +-+-++.-...+.+..+-+.|.+.|-. +| .+|+|.
T Consensus 55 mgkntm~rrair~~~~~~~~~~~llp~~~g~vgfvftk~----~L~ei~~~i~~n~~~apar~GaiAp~dV~V~~~nTg~ 130 (245)
T KOG0815|consen 55 MGKNTMMRRAIRGHLENNPALEKLLPVVKGNVGFVFTKG----DLKEIRKEIIENKVGAPARVGAIAPIDVTVPAQNTGL 130 (245)
T ss_pred echhHHHHHHHHhccCCcHHHHhhccceeeceeEEEEec----cHHHHHHHHHhcccccccccCCcCCceEEeccccCCC
Confidence 55677777888877777664442 222211112344442 334455556666666555667776643 34 999998
Q ss_pred HH---HH-HHcCCcEEE
Q 033926 78 LK---LI-NHKNYAMNS 90 (108)
Q Consensus 78 al---~~-~~~G~~~~i 90 (108)
+- .. +.+||+..|
T Consensus 131 ~P~ktsfFQaLgIpTKI 147 (245)
T KOG0815|consen 131 GPEKTSFFQALGIPTKI 147 (245)
T ss_pred CcchhhhhhhcCCceee
Confidence 86 44 999987654
No 228
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=22.03 E-value=1.2e+02 Score=24.83 Aligned_cols=22 Identities=14% Similarity=0.072 Sum_probs=19.6
Q ss_pred cchHHHHH-HH-HHcCCcEEEEec
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
+|-.|++. .. ++.|++++++-+
T Consensus 220 gGpAGl~AA~~la~~G~~v~li~~ 243 (515)
T TIGR03140 220 GGPAGAAAAIYAARKGLRTAMVAE 243 (515)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEec
Confidence 99999999 88 999999999853
No 229
>PLN02477 glutamate dehydrogenase
Probab=22.02 E-value=3.8e+02 Score=21.78 Aligned_cols=45 Identities=18% Similarity=0.100 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHc-CCCCCCeEe----cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 50 RIAYSMIKDAEDK-GLITPGKVF----NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 50 R~a~~~l~~a~~~-g~~~~g~~v----sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
||+...+..+.+. |..-.|.++ .||-|..+ -. ...|.+++.|.+.
T Consensus 187 ~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 187 RGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred HHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 6777777776543 332234443 99999999 77 8899888865443
No 230
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=21.86 E-value=61 Score=18.60 Aligned_cols=29 Identities=10% Similarity=-0.121 Sum_probs=22.6
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecCCCCHHH
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLFSVNVNN 100 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k 100 (108)
.|-.|+++ .. +.+|++|++-=++.-+.++
T Consensus 13 ~~lLg~~I~~~~K~ygYkht~d~~e~~~~~~ 43 (50)
T PF12606_consen 13 MGLLGLSICTTLKAYGYKHTVDPLEDEPEEK 43 (50)
T ss_pred HHHHHHHHHHHhhccccccccCCCCCCchhh
Confidence 78889999 77 9999999998744444444
No 231
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=21.72 E-value=1.2e+02 Score=22.47 Aligned_cols=23 Identities=9% Similarity=-0.083 Sum_probs=16.4
Q ss_pred cchHHHHHHHHHcCCcEEEEecC
Q 033926 72 NGNSPILKLINHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al~~~~~G~~~~ivvp~ 94 (108)
.|.+.+|+.|+.+++|+.++.+.
T Consensus 197 ~Gt~~~a~~Ak~~~vPv~v~~~~ 219 (282)
T PF01008_consen 197 VGTLQLALAAKEFNVPVYVLAES 219 (282)
T ss_dssp TTHHHHHHHHHHTT-EEEEE--G
T ss_pred hhHHHHHHHHHhhCCCEEEEccc
Confidence 78888887667799999999654
No 232
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=21.71 E-value=1.3e+02 Score=16.72 Aligned_cols=22 Identities=14% Similarity=-0.035 Sum_probs=16.9
Q ss_pred cchHHHHH-HH-HHcCCcEEEEec
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
....+..+ .+ +..|+++.++.-
T Consensus 9 C~~~a~l~~~llr~~GIpar~v~g 32 (68)
T smart00460 9 CGEFAALFVALLRSLGIPARVVSG 32 (68)
T ss_pred eHHHHHHHHHHHHHCCCCeEEEee
Confidence 45566666 77 999999999864
No 233
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=21.70 E-value=2.4e+02 Score=22.59 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=27.0
Q ss_pred HHHHHHHcCCCCCCeEe----cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 55 MIKDAEDKGLITPGKVF----NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 55 ~l~~a~~~g~~~~g~~v----sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
++..+...|..-.|.++ .||-|..+ -. +.+|+++.++=|.
T Consensus 103 lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~ 148 (381)
T PRK00257 103 LLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPP 148 (381)
T ss_pred HHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCc
Confidence 33334444433234444 99999999 77 9999999988654
No 234
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=21.53 E-value=1.7e+02 Score=24.25 Aligned_cols=28 Identities=4% Similarity=-0.104 Sum_probs=22.2
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHh
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFN 102 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~ 102 (108)
.|.+|.++ .. +..|++++++= .++++++
T Consensus 13 aG~MG~gIA~~la~aG~~V~l~d---~~~e~l~ 42 (503)
T TIGR02279 13 AGAMGAGIAQVAASAGHQVLLYD---IRAEALA 42 (503)
T ss_pred cCHHHHHHHHHHHhCCCeEEEEe---CCHHHHH
Confidence 99999999 88 99999999884 3444443
No 235
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=21.48 E-value=1.6e+02 Score=22.93 Aligned_cols=24 Identities=13% Similarity=-0.018 Sum_probs=21.2
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecCC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLFS 95 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~~ 95 (108)
+|..|..+ .+ +.+|++++++-|..
T Consensus 10 ~Gql~~ml~~aa~~lG~~v~~~d~~~ 35 (372)
T PRK06019 10 GGQLGRMLALAAAPLGYKVIVLDPDP 35 (372)
T ss_pred CCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 88999988 88 99999999998874
No 236
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=21.44 E-value=1.6e+02 Score=20.00 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHcCCCCCCeEe-cchHHHHH-HH-HHcCCcEEEEecCC--CCHHH--Hhhc
Q 033926 51 IAYSMIKDAEDKGLITPGKVF-NGNSPILK-LI-NHKNYAMNSVFLFS--VNVNN--FNQA 104 (108)
Q Consensus 51 ~a~~~l~~a~~~g~~~~g~~v-sGN~g~al-~~-~~~G~~~~ivvp~~--~~~~k--~~~~ 104 (108)
++...|..+.+.|.. ..+ ||.+-... .. ..+|+.-.+|.... .|..| .+.+
T Consensus 131 ~~~~~l~~L~~~Gi~---~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i 188 (215)
T PF00702_consen 131 GAKEALQELKEAGIK---VAILTGDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRII 188 (215)
T ss_dssp THHHHHHHHHHTTEE---EEEEESSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHH
T ss_pred hhhhhhhhhhccCcc---eeeeeccccccccccccccccccccccccccccccchhHHHHH
Confidence 377778888777631 233 77666666 66 99999766666666 78888 5544
No 237
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=21.42 E-value=3.5e+02 Score=20.16 Aligned_cols=54 Identities=6% Similarity=-0.071 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCCCCCeEe---cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhhcc
Q 033926 50 RIAYSMIKDAEDKGLITPGKVF---NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQAH 105 (108)
Q Consensus 50 R~a~~~l~~a~~~g~~~~g~~v---sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~~~ 105 (108)
.|.-..+..+.+.|.. |..+ .-....-+ -. +.+|++...++..+++.+++..+.
T Consensus 102 ~G~e~f~~~~~~aGvd--gviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~ 160 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVD--GVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIA 160 (256)
T ss_pred hhHHHHHHHHHHcCCC--EEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHH
Confidence 4666778888888743 4444 43455555 55 899999998888888988876543
No 238
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=21.40 E-value=1.9e+02 Score=21.82 Aligned_cols=22 Identities=5% Similarity=-0.180 Sum_probs=18.6
Q ss_pred cchHHHHH-HH-HHcCCcEEEEec
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
.|+.|.++ .. ...|+++++|-+
T Consensus 9 lG~mG~~mA~~l~~~G~~V~v~d~ 32 (296)
T PRK15461 9 LGQMGSPMASNLLKQGHQLQVFDV 32 (296)
T ss_pred eCHHHHHHHHHHHHCCCeEEEEcC
Confidence 89999999 77 889998887743
No 239
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=21.25 E-value=1.3e+02 Score=23.28 Aligned_cols=21 Identities=5% Similarity=0.015 Sum_probs=17.4
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-.|.+. +. +..|.+++|+=
T Consensus 8 ~Gi~Gls~A~~l~~~g~~V~vle 30 (416)
T PRK00711 8 SGVIGVTSAWYLAQAGHEVTVID 30 (416)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEe
Confidence 89999999 88 88898866654
No 240
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.24 E-value=1.3e+02 Score=22.39 Aligned_cols=23 Identities=9% Similarity=-0.142 Sum_probs=20.0
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
.|+.|.++ .. +..|++++++-..
T Consensus 12 aG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 12 AGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 99999999 88 9999999988643
No 241
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.24 E-value=1.1e+02 Score=24.82 Aligned_cols=21 Identities=5% Similarity=0.071 Sum_probs=19.0
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|=.|++. .. ++.|++++|+=
T Consensus 11 aG~~GL~aAa~LA~~G~~V~VlE 33 (487)
T COG1233 11 AGLNGLAAAALLARAGLKVTVLE 33 (487)
T ss_pred CChhHHHHHHHHHhCCCEEEEEE
Confidence 99999999 77 99999999973
No 242
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=21.23 E-value=1.4e+02 Score=22.14 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=18.2
Q ss_pred cchHHHHH-HH-HHcCCcEEEE
Q 033926 72 NGNSPILK-LI-NHKNYAMNSV 91 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~iv 91 (108)
+|-.|.+. +. +..|++++++
T Consensus 29 gGpAGL~aA~~la~~G~~V~vl 50 (254)
T TIGR00292 29 AGPSGLTAAYYLAKNGLKVCVL 50 (254)
T ss_pred CCHHHHHHHHHHHHCCCcEEEE
Confidence 99999999 88 9999998887
No 243
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=21.18 E-value=1.3e+02 Score=23.92 Aligned_cols=22 Identities=9% Similarity=0.057 Sum_probs=19.2
Q ss_pred cchHHHHH-HH-HHcCCcEEEEec
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
+|-.|.++ +. +..|++++++=-
T Consensus 13 aGpAG~~aA~~La~~G~~V~llEr 36 (428)
T PRK10157 13 AGLAGSVAALVLAREGAQVLVIER 36 (428)
T ss_pred cCHHHHHHHHHHHhCCCeEEEEEc
Confidence 99999999 88 999999888743
No 244
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=21.17 E-value=1.2e+02 Score=25.69 Aligned_cols=56 Identities=14% Similarity=0.046 Sum_probs=33.0
Q ss_pred EEEEeCCCCCCcchhhHHHHHHHHHHHHc-CCCCCCeEe--cchHHHHH-HH-HHcCCcEEEE
Q 033926 34 IAAKLEMMQPCSSVKDRIAYSMIKDAEDK-GLITPGKVF--NGNSPILK-LI-NHKNYAMNSV 91 (108)
Q Consensus 34 i~~KlE~~nptGS~K~R~a~~~l~~a~~~-g~~~~g~~v--sGN~g~al-~~-~~~G~~~~iv 91 (108)
-..|...-++++.-..|-. .+...... ....-.++| +|-+|.++ +- +..|++++++
T Consensus 40 ~~~~~~~~~~~~~~~~r~~--~~~~~~~~~~~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~Lv 100 (627)
T PLN02464 40 DSLRDRIADPNASVPSRSA--QESALIGATAAEPLDVLVVGGGATGAGVALDAATRGLRVGLV 100 (627)
T ss_pred ccchhhhhccCCCCcChHH--HHHHhhccccCCccCEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 4455555566666666643 23322200 001123444 99999999 88 9999997766
No 245
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=21.17 E-value=3e+02 Score=22.64 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=20.4
Q ss_pred cchHHHHH--HH-HHcCCcE-EEEecCCCCHH
Q 033926 72 NGNSPILK--LI-NHKNYAM-NSVFLFSVNVN 99 (108)
Q Consensus 72 sGN~g~al--~~-~~~G~~~-~ivvp~~~~~~ 99 (108)
+||.|.-+ |. +.+|++. .+++..+.++.
T Consensus 255 tGnfgni~a~~~Ak~mGlpi~kli~a~n~n~i 286 (460)
T cd01560 255 TGNFGNILAGYYAKKMGLPIKKLIVATNENDV 286 (460)
T ss_pred CCcHHHHHHHHHHHHcCCCCccEEEEeCCChH
Confidence 99999888 55 8999985 45555655553
No 246
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=21.06 E-value=1.3e+02 Score=24.31 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=18.3
Q ss_pred cchHHHHH-HH-HHcCCcEEEE
Q 033926 72 NGNSPILK-LI-NHKNYAMNSV 91 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~iv 91 (108)
+|-.|++. .. +..|.+++|+
T Consensus 8 aG~~Gl~aA~~La~~G~~V~vl 29 (493)
T TIGR02730 8 SGIGGLVTATQLAVKGAKVLVL 29 (493)
T ss_pred CcHHHHHHHHHHHHCCCcEEEE
Confidence 99999999 77 9999999887
No 247
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=21.04 E-value=3.4e+02 Score=21.11 Aligned_cols=24 Identities=8% Similarity=0.074 Sum_probs=20.6
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecCC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLFS 95 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~~ 95 (108)
+|..|+-+ .. +.+|.+++++.+..
T Consensus 152 gG~ig~E~A~~l~~~g~~Vtlv~~~~ 177 (396)
T PRK09754 152 AGTIGLELAASATQRRCKVTVIELAA 177 (396)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 99999988 77 88999999997654
No 248
>PRK12831 putative oxidoreductase; Provisional
Probab=21.01 E-value=1.2e+02 Score=24.43 Aligned_cols=21 Identities=10% Similarity=0.001 Sum_probs=18.8
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-.|++. +. +.+|++++||=
T Consensus 148 ~GpAGl~aA~~l~~~G~~V~v~e 170 (464)
T PRK12831 148 SGPAGLTCAGDLAKMGYDVTIFE 170 (464)
T ss_pred cCHHHHHHHHHHHhCCCeEEEEe
Confidence 89999999 88 99999998883
No 249
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=20.99 E-value=3.7e+02 Score=20.69 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=17.1
Q ss_pred cCCCCCCeEe-----cchHHHHH--HHHHcCCcEEEEe
Q 033926 62 KGLITPGKVF-----NGNSPILK--LINHKNYAMNSVF 92 (108)
Q Consensus 62 ~g~~~~g~~v-----sGN~g~al--~~~~~G~~~~ivv 92 (108)
.+.+++|..+ +|.-|..+ +++.+|...++++
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~ 174 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVV 174 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEe
Confidence 4456666654 55555544 3388888444433
No 250
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=20.84 E-value=3.4e+02 Score=20.96 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCCCCCeEe-----cchHHHH--H-HH-HHcCCcEEEEecCCCCHHHHhhc
Q 033926 53 YSMIKDAEDKGLITPGKVF-----NGNSPIL--K-LI-NHKNYAMNSVFLFSVNVNNFNQA 104 (108)
Q Consensus 53 ~~~l~~a~~~g~~~~g~~v-----sGN~g~a--l-~~-~~~G~~~~ivvp~~~~~~k~~~~ 104 (108)
+..|.+|.+... -|.++ .|+-.+. + -. +..|.++.+++-...+++|++-+
T Consensus 203 ~~~I~ka~~A~~--vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf 261 (308)
T TIGR03682 203 YARISKALDAKK--FGILVSTKKGQRRPELAEELKKLLEELGKEALLILLDNISPDQLRNL 261 (308)
T ss_pred HHHHHHHhhCCe--EEEEEEccCcCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHhcC
Confidence 456677776532 35544 5555444 4 34 88899999999999999999754
No 251
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=20.51 E-value=1.3e+02 Score=24.18 Aligned_cols=23 Identities=4% Similarity=-0.115 Sum_probs=20.0
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|-.|++. +. +..|+++++|=..
T Consensus 151 aGpAGl~aA~~l~~~G~~V~vie~~ 175 (471)
T PRK12810 151 SGPAGLAAADQLARAGHKVTVFERA 175 (471)
T ss_pred cCHHHHHHHHHHHhCCCcEEEEecC
Confidence 99999999 88 9999999998644
No 252
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.50 E-value=3.4e+02 Score=20.51 Aligned_cols=64 Identities=9% Similarity=0.012 Sum_probs=47.8
Q ss_pred eCCCCCCcchhhHHHHHHHHHHHHcCCCCCCeEe---cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhhccc
Q 033926 38 LEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF---NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQAHP 106 (108)
Q Consensus 38 lE~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~v---sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~~~~ 106 (108)
+-++||--+ ||..+.+..|.+.|.. |..+ -=--+..+ -. +..|+.++..+-.+++.+|.+++-.
T Consensus 101 mgYYNPIl~---yG~e~~iq~ak~aGan--GfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~ 169 (268)
T KOG4175|consen 101 MGYYNPILR---YGVENYIQVAKNAGAN--GFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVE 169 (268)
T ss_pred eecccHHHh---hhHHHHHHHHHhcCCC--ceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHH
Confidence 456777654 7888888888888743 4444 44455667 55 8999999999999999999887643
No 253
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=20.37 E-value=1.5e+02 Score=24.40 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=20.8
Q ss_pred CeEe--cchHHHHH-HH-HHcCCcEEEEe
Q 033926 68 GKVF--NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 68 g~~v--sGN~g~al-~~-~~~G~~~~ivv 92 (108)
.++| +|-.|.+- ++ .++|++++|+=
T Consensus 4 ~VvIvGgGI~Gla~A~~l~r~G~~v~VlE 32 (420)
T KOG2614|consen 4 KVVIVGGGIVGLATALALHRKGIDVVVLE 32 (420)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCeEEEEe
Confidence 3444 89999999 88 99999999874
No 254
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.27 E-value=1.4e+02 Score=23.30 Aligned_cols=23 Identities=4% Similarity=-0.369 Sum_probs=20.9
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLF 94 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~ 94 (108)
+|..|.++ .. +..|++++++=+.
T Consensus 15 aG~MG~giA~~~a~aG~~V~l~D~~ 39 (321)
T PRK07066 15 SGVIGSGWVARALAHGLDVVAWDPA 39 (321)
T ss_pred cCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 99999999 77 9999999998765
No 255
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=20.12 E-value=3e+02 Score=21.79 Aligned_cols=24 Identities=4% Similarity=-0.108 Sum_probs=20.7
Q ss_pred cchHHHHH-HH-HHcCCcEEEEecCC
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFLFS 95 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp~~ 95 (108)
+|..|+-+ .. +.+|.+++++....
T Consensus 156 gG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 156 AGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 99999888 77 99999999998653
No 256
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=20.05 E-value=3.5e+02 Score=20.50 Aligned_cols=41 Identities=7% Similarity=-0.054 Sum_probs=23.7
Q ss_pred HcCCCCCCeEe----cchHHHHH-HH-HHcCCcEEEEecCCCCHHHHhh
Q 033926 61 DKGLITPGKVF----NGNSPILK-LI-NHKNYAMNSVFLFSVNVNNFNQ 103 (108)
Q Consensus 61 ~~g~~~~g~~v----sGN~g~al-~~-~~~G~~~~ivvp~~~~~~k~~~ 103 (108)
+.+.+.+|..+ +|-.|+++ .. +.+|.+.++++.. +++|.+.
T Consensus 170 ~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~--~~~~~~~ 216 (358)
T TIGR03451 170 NTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI--DDRKLEW 216 (358)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHH
Confidence 34445666554 67677776 55 8889874444422 3445444
No 257
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=20.03 E-value=1.5e+02 Score=21.11 Aligned_cols=21 Identities=10% Similarity=-0.137 Sum_probs=17.3
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+||.|.++ .. ...|.+++++-
T Consensus 9 ~G~mG~ala~~L~~~G~~V~v~~ 31 (219)
T TIGR01915 9 TGDQGKGLALRLAKAGNKIIIGS 31 (219)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEE
Confidence 49999999 77 88898887764
No 258
>PRK10015 oxidoreductase; Provisional
Probab=20.02 E-value=1.4e+02 Score=23.78 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=18.4
Q ss_pred cchHHHHH-HH-HHcCCcEEEEe
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVF 92 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivv 92 (108)
+|-.|.+. +. +..|+++.++=
T Consensus 13 gGpAG~~aA~~LA~~G~~VlliE 35 (429)
T PRK10015 13 AGVAGSVAALVMARAGLDVLVIE 35 (429)
T ss_pred cCHHHHHHHHHHHhCCCeEEEEe
Confidence 99999999 88 99999977763
No 259
>PRK06116 glutathione reductase; Validated
Probab=20.01 E-value=1.4e+02 Score=23.71 Aligned_cols=22 Identities=9% Similarity=-0.065 Sum_probs=19.0
Q ss_pred cchHHHHH-HH-HHcCCcEEEEec
Q 033926 72 NGNSPILK-LI-NHKNYAMNSVFL 93 (108)
Q Consensus 72 sGN~g~al-~~-~~~G~~~~ivvp 93 (108)
+|-.|.+. .. +++|.++++|=.
T Consensus 12 ~GpaG~~aA~~~a~~G~~V~liE~ 35 (450)
T PRK06116 12 GGSGGIASANRAAMYGAKVALIEA 35 (450)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEec
Confidence 99999999 77 999999888854
Done!