RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 033926
(108 letters)
>gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase.
Length = 323
Score = 142 bits (360), Expect = 3e-43
Identities = 62/69 (89%), Positives = 66/69 (95%)
Query: 1 MEDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAE 60
MED+C IK DVTELIG+TPMVYLNN+VDGCVA IAAKLEMM+PCSSVKDRIAYSMIKDAE
Sbjct: 1 MEDRCLIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAE 60
Query: 61 DKGLITPGK 69
DKGLITPGK
Sbjct: 61 DKGLITPGK 69
>gnl|CDD|166206 PLN02565, PLN02565, cysteine synthase.
Length = 322
Score = 131 bits (332), Expect = 6e-39
Identities = 54/67 (80%), Positives = 59/67 (88%)
Query: 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDK 62
+K I KDVTELIG TP+VYLNNVVDGCVA IAAKLEMM+PCSSVKDRI YSMI DAE+K
Sbjct: 1 EKSSIAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEK 60
Query: 63 GLITPGK 69
GLI PG+
Sbjct: 61 GLIKPGE 67
>gnl|CDD|178171 PLN02556, PLN02556, cysteine synthase/L-3-cyanoalanine synthase.
Length = 368
Score = 100 bits (251), Expect = 8e-27
Identities = 42/64 (65%), Positives = 51/64 (79%)
Query: 6 EIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLI 65
+IK D ++LIG TP+VYLN V +GC A+IAAK EM QP SS+KDR A +MI+DAE K LI
Sbjct: 48 KIKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLI 107
Query: 66 TPGK 69
TPGK
Sbjct: 108 TPGK 111
>gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase. This model discriminates
cysteine synthases (EC 2.5.1.47) (both CysK and CysM)
from cystathionine beta-synthase, a protein found
primarily in eukaryotes and carrying a C-terminal CBS
domain lacking from this protein. Bacterial proteins
lacking the CBS domain but otherwise showing
resemblamnce to cystathionine beta-synthases and
considerable phylogenetic distance from known cysteine
synthases were excluded from the seed and score below
the trusted cutoff [Amino acid biosynthesis, Serine
family].
Length = 299
Score = 98.9 bits (247), Expect = 2e-26
Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKV 70
+ ELIG+TP+V LN + GC A + AKLE P SVKDRIA SMI+DAE +GL+ PG
Sbjct: 1 IEELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDT 60
Query: 71 F----NGNSPI 77
+GN+ I
Sbjct: 61 IIEATSGNTGI 71
>gnl|CDD|178587 PLN03013, PLN03013, cysteine synthase.
Length = 429
Score = 99.9 bits (248), Expect = 4e-26
Identities = 44/67 (65%), Positives = 54/67 (80%)
Query: 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDK 62
D I +V++LIG TPMVYLN++ GCVA+IAAKLE+M+PC SVKDRI YSM+ DAE K
Sbjct: 109 DGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQK 168
Query: 63 GLITPGK 69
G I+PGK
Sbjct: 169 GFISPGK 175
>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and
metabolism].
Length = 300
Score = 93.8 bits (234), Expect = 1e-24
Identities = 32/64 (50%), Positives = 41/64 (64%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I + + +LIG+TP+V LN + G I AKLE P SVKDRIA MI+DAE +GL+
Sbjct: 1 IYESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLK 60
Query: 67 PGKV 70
PG
Sbjct: 61 PGGT 64
>gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A. This model distinguishes
cysteine synthase A (CysK) from cysteine synthase B
(CysM). CysM differs in having a broader specificity
that also allows the use of thiosulfate to produce
cysteine thiosulfonate [Amino acid biosynthesis, Serine
family].
Length = 298
Score = 92.8 bits (231), Expect = 3e-24
Identities = 36/71 (50%), Positives = 49/71 (69%), Gaps = 5/71 (7%)
Query: 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKV 70
++ELIG+TP+V LN + +GC A++ KLE P SVKDRIA +MI DAE +GL+ PGK
Sbjct: 1 ISELIGNTPLVRLNRI-EGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKT 59
Query: 71 F----NGNSPI 77
+GN+ I
Sbjct: 60 IVEPTSGNTGI 70
>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a
unique heme-containing enzyme that catalyzes a
pyridoxal 5'-phosphate (PLP)-dependent condensation of
serine and homocysteine to give cystathionine.
Deficiency of CBS leads to homocystinuria, an inherited
disease of sulfur metabolism characterized by increased
levels of the toxic metabolite homocysteine. Cysteine
synthase on the other hand catalyzes the last step of
cysteine biosynthesis. This subgroup also includes an
O-Phosphoserine sulfhydrylase found in
hyperthermophilic archaea which produces L-cysteine
from sulfide and the more thermostable
O-phospho-L-serine.
Length = 291
Score = 85.6 bits (213), Expect = 2e-21
Identities = 30/55 (54%), Positives = 36/55 (65%)
Query: 16 GHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKV 70
G+TP+V LN + G A I AKLE P SVKDRIA MI+DAE +GL+ PG
Sbjct: 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTT 55
>gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional.
Length = 330
Score = 74.5 bits (184), Expect = 3e-17
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 7 IKKDVTELIGHTPMVYLNNVVD--GCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
I +DV++ IG+TP++ LN + GC I K E + P SVKDR A ++I DAE +GL
Sbjct: 3 IFEDVSDTIGNTPLIRLNRASEATGC--EILGKAEFLNPGGSVKDRAALNIIWDAEKRGL 60
Query: 65 ITPG 68
+ PG
Sbjct: 61 LKPG 64
>gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis
protein SbnA. Members of this family include SbnA, a
protein of the staphyloferrin B biosynthesis operon of
Staphylococcus aureus. SbnA and SbnB together appear to
synthesize 2,3-diaminopropionate, a precursor of
certain siderophores and other secondary metabolites.
SbnA is a pyridoxal phosphate-dependent enzyme
[Cellular processes, Biosynthesis of natural products].
Length = 304
Score = 71.5 bits (176), Expect = 3e-16
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKV 70
+ LIG+TP+V L + + AKLE P S+KDR A +++ A +G ITPG
Sbjct: 1 ILSLIGNTPLVKLERLFPDAPFRLFAKLEGFNPGGSIKDRPALYILEAAIKRGRITPGTT 60
Query: 71 F 71
Sbjct: 61 I 61
>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase. Members of
this family closely resemble cysteine synthase but
contain an additional C-terminal CBS domain. The
function of any bacterial member included in this
family is proposed but not proven [Amino acid
biosynthesis, Serine family].
Length = 454
Score = 71.4 bits (175), Expect = 5e-16
Identities = 30/62 (48%), Positives = 39/62 (62%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I+ ++ +LIG+TP+V LN V G + AK E P SVKDRIA MI+DAE G +
Sbjct: 1 IRDNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLK 60
Query: 67 PG 68
PG
Sbjct: 61 PG 62
>gnl|CDD|236972 PRK11761, cysM, cysteine synthase B; Provisional.
Length = 296
Score = 67.6 bits (166), Expect = 8e-15
Identities = 27/56 (48%), Positives = 32/56 (57%)
Query: 13 ELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPG 68
+ IG+TP+V L + I AKLE P SVKDR A SMI AE +G I PG
Sbjct: 8 DTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPG 63
>gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B. CysM differs from CysK in
that it can also use thiosulfate instead of sulfide, to
produce cysteine thiosulfonate instead of cysteine.
Alternate name: O-acetylserine (thiol)-lyase [Amino
acid biosynthesis, Serine family].
Length = 290
Score = 58.4 bits (141), Expect = 2e-11
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKV 70
+ + +G+TP+V L + + + KLE P SVKDR A SMI +AE +G I PG V
Sbjct: 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDV 61
Query: 71 F----NGNSPI 77
+GN+ I
Sbjct: 62 LIEATSGNTGI 72
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily
(fold type II); this family of pyridoxal phosphate
(PLP)-dependent enzymes catalyzes beta-replacement and
beta-elimination reactions. This CD corresponds to
aminocyclopropane-1-carboxylate deaminase (ACCD),
tryptophan synthase beta chain (Trp-synth_B),
cystathionine beta-synthase (CBS), O-acetylserine
sulfhydrylase (CS), serine dehydratase (Ser-dehyd),
threonine dehydratase (Thr-dehyd), diaminopropionate
ammonia lyase (DAL), and threonine synthase
(Thr-synth). ACCD catalyzes the conversion of
1-aminocyclopropane-1-carboxylate to
alpha-ketobutyrate and ammonia. Tryptophan synthase
folds into a tetramer, where the beta chain is the
catalytic PLP-binding subunit and catalyzes the
formation of L-tryptophan from indole and L-serine. CBS
is a tetrameric hemeprotein that catalyzes condensation
of serine and homocysteine to cystathionine. CS is a
homodimer that catalyzes the formation of L-cysteine
from O-acetyl-L-serine. Ser-dehyd catalyzes the
conversion of L- or D-serine to pyruvate and ammonia.
Thr-dehyd is active as a homodimer and catalyzes the
conversion of L-threonine to 2-oxobutanoate and
ammonia. DAL is also a homodimer and catalyzes the
alpha, beta-elimination reaction of both L- and
D-alpha, beta-diaminopropionate to form pyruvate and
ammonia. Thr-synth catalyzes the formation of threonine
and inorganic phosphate from O-phosphohomoserine.
Length = 244
Score = 57.5 bits (140), Expect = 2e-11
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 18 TPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKV 70
TP+V L + A+I KLE + P S KDR A ++I AE++G + G +
Sbjct: 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVI 53
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme. Members
of this family are all pyridoxal-phosphate dependent
enzymes. This family includes: serine dehydratase
EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16,
tryptophan synthase beta chain EC:4.2.1.20, threonine
synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8
P11096, cystathionine beta-synthase EC:4.2.1.22,
1-aminocyclopropane-1-carboxylate deaminase
EC:4.1.99.4.
Length = 295
Score = 53.9 bits (130), Expect = 7e-10
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
++ IG TP+V L + A + KLE + P S KDR A ++ A ++G
Sbjct: 1 ISLGIGPTPLVRLPS--PLLGARVYLKLESLNPTGSFKDRGAAYLLLRALERG 51
>gnl|CDD|215204 PLN02356, PLN02356, phosphateglycerate kinase.
Length = 423
Score = 48.4 bits (115), Expect = 6e-08
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
K + + + + IG+TP++ +N++ + I K E + P SVKDR+A +I++A + G
Sbjct: 40 KKKPRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESG 99
Query: 64 LITPGKVFNGNS 75
+ PG V S
Sbjct: 100 QLFPGGVVTEGS 111
>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and
metabolism].
Length = 347
Score = 32.2 bits (74), Expect = 0.027
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 17 HTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIK-----DAEDKGLIT 66
TP+ ++ + A I K E +QP S K R AY+ + + G+I
Sbjct: 25 PTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAAGVIA 79
>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in
amino acid degradation is the removal of nitrogen.
Although the nitrogen atoms of most amino acids are
transferred to alpha-ketoglutarate before removal, the
alpha-amino group of threonine can be directly
converted into NH4+. The direct deamination is
catalyzed by threonine dehydratase, in which pyridoxal
phosphate (PLP) is the prosthetic group. Threonine
dehydratase is widely distributed in all three major
phylogenetic divisions.
Length = 304
Score = 31.7 bits (73), Expect = 0.046
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 17 HTPMVY---LNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMI----KDAEDKGLIT 66
TP++ L+ ++ A + K E +Q S K R AY+ + ++ KG++
Sbjct: 17 RTPLLTSPTLSELLG---AEVYLKCENLQKTGSFKIRGAYNKLLSLSEEERAKGVVA 70
>gnl|CDD|236317 PRK08638, PRK08638, threonine dehydratase; Validated.
Length = 333
Score = 29.7 bits (67), Expect = 0.24
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 1 MEDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAY---SMIK 57
++D E K+ + I TP+ N + + C I KLE MQ S K R A+ S +
Sbjct: 11 IDDIIEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLT 70
Query: 58 DAE-DKGLIT 66
DAE KG++
Sbjct: 71 DAEKRKGVVA 80
>gnl|CDD|200222 TIGR02965, xanthine_xdhB, xanthine dehydrogenase, molybdopterin
binding subunit. Members of the protein family are the
molybdopterin-containing large subunit (or, in,
eukaryotes, the molybdopterin-binding domain) of
xanthine dehydrogenase, and enzyme that reduces the
purine pool by catabolizing xanthine to urate. This
model is based primarily on bacterial sequences; it does
not manage to include all eukaryotic xanthine
dehydrogenases and thereby discriminate them from the
closely related enzyme aldehyde dehydrogenase [Purines,
pyrimidines, nucleosides, and nucleotides, Other].
Length = 758
Score = 29.3 bits (66), Expect = 0.39
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 71 FNGNSPILKLINHKNYAMNSV-FLFSVNVNNFNQA 104
FN SP+LK K A+ V F S V + NQA
Sbjct: 418 FNATSPVLK----KGIALTPVKFGISFTVTHLNQA 448
>gnl|CDD|235789 PRK06381, PRK06381, threonine synthase; Validated.
Length = 319
Score = 28.9 bits (65), Expect = 0.46
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 37 KLEMMQPCSSVKDRIAYSMIKDAEDKG 63
K E P + KDRIA + ++ A G
Sbjct: 36 KFEGANPTGTQKDRIAEAHVRRAMRLG 62
>gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed.
Length = 352
Score = 28.9 bits (64), Expect = 0.54
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 10 DVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
DV+ + G+TP++ L N+ + K E P S KDR + A+++G
Sbjct: 21 DVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEG 74
>gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase. This model represents
threonine dehydratase, the first step in the pathway
converting threonine into isoleucine. At least two
other clades of biosynthetic threonine dehydratases
have been charcterized (TIGR01124 and TIGR01127). Those
sequences described by this model are exclusively found
in species containg the rest of the isoleucine pathway
and which are generally lacking in members of the those
other two clades of threonine dehydratases. Members of
this clade are also often gene clustered with other
elements of the isoleucine pathway [Amino acid
biosynthesis, Pyruvate family].
Length = 409
Score = 28.2 bits (63), Expect = 0.78
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAED 61
+D +K + E++ HTP+ + + A+I K E +QP S K R AY+ +K D
Sbjct: 1 QDIEAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSD 60
Query: 62 KGL 64
L
Sbjct: 61 AQL 63
>gnl|CDD|180565 PRK06450, PRK06450, threonine synthase; Validated.
Length = 338
Score = 27.0 bits (60), Expect = 1.9
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
IK ++ G TP++ N+ KL+ + P S KDR + ++I +KG+
Sbjct: 48 IKHFISLGEGRTPLIKKGNI--------WFKLDFLNPTGSYKDRGSVTLISYLAEKGI 97
>gnl|CDD|235757 PRK06260, PRK06260, threonine synthase; Validated.
Length = 397
Score = 26.8 bits (60), Expect = 2.0
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 8 KKDVTELIGHTPMVYLNNVVDGC-VAHIAAKLEMMQPCSSVKDR 50
KK V+ G TP+ N+ V + K E P S KDR
Sbjct: 58 KKIVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDR 101
>gnl|CDD|233332 TIGR01256, modA, molybdenum ABC transporter, periplasmic
molybdate-binding protein. The model describes the
molybdate ABC transporter periplasmic binding protein
in bacteria and archae. Several of the periplasmic
receptors constitute a diverse class of binding
proteins that differ widely in size, sequence and
ligand specificity. It has been shown experimentally by
radioactive labeling that ModA represent hydrophylioc
periplasmic-binding protein in gram-negative organisms
and its counterpart in gram-positive organisms is a
lipoprotein. The other components of the system include
the ModB, an integral membrane protein and ModC the
ATP-binding subunit. Invariably almost all of them
display a common beta/alpha folding motif and have
similar tertiary structures consisting of two globular
domains [Transport and binding proteins, Anions].
Length = 216
Score = 27.0 bits (60), Expect = 2.1
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 57 KDAEDKGLITPG--KVFNGNSPILKLINHKNYAMNSVFLFSVNVN 99
K DKGL+ G + GN L LI+ KN ++ + + V
Sbjct: 55 KKLVDKGLVVAGSRFTYAGNK--LVLISPKNRVVDDLDILKKWVA 97
>gnl|CDD|227413 COG5081, COG5081, Predicted membrane protein [Function unknown].
Length = 180
Score = 26.7 bits (59), Expect = 2.1
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 53 YSMIKDAEDKGLITPGKVFNGNSPILKLINHKNYAMNSVFLFSVNV 98
+M + +++ L TP + F PI+ + +Y ++FLF +N+
Sbjct: 103 LTMWEQLDEETLYTPDRKFLLLVPIILFLASNHYVHYNIFLFLINI 148
>gnl|CDD|180539 PRK06352, PRK06352, threonine synthase; Validated.
Length = 351
Score = 26.6 bits (58), Expect = 2.9
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 16 GHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
G+TP++ L N+ + K E + P S KDR + A+++G
Sbjct: 27 GNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEG 74
>gnl|CDD|236417 PRK09224, PRK09224, threonine dehydratase; Reviewed.
Length = 504
Score = 26.3 bits (59), Expect = 3.2
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 33 HIAAKLEMMQPCSSVKDRIAYSMI----KDAEDKGLIT 66
+ K E +QP S K R AY+ + ++ +G+IT
Sbjct: 36 QVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLARGVIT 73
>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase.
Length = 591
Score = 26.0 bits (57), Expect = 5.1
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 37 KLEMMQPCSSVKDRIAYSMI----KDAEDKGLI 65
K E +QP S K R AY+M+ K+ DKG+I
Sbjct: 129 KREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVI 161
>gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form. A
form of threonine dehydratase with two copies of the
C-terminal domain pfam00585 is described by TIGR01124.
This model describes a phylogenetically distinct form
with a single copy of pfam00585. This form branches
with the catabolic threonine dehydratase of E. coli;
many members are designated as catabolic for this
reason. However, the catabolic form lacks any pfam00585
domain. Many members of this model are found in species
with other Ile biosynthetic enzymes [Amino acid
biosynthesis, Pyruvate family].
Length = 380
Score = 25.9 bits (57), Expect = 5.3
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 18 TPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMI----KDAEDKGLIT 66
TP++Y + D + + KLE +Q S K R A + I +D +G++
Sbjct: 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQRGVVA 53
>gnl|CDD|117912 pfam09370, TIM-br_sig_trns, TIM-barrel signal transduction protein.
This domain is likely to have a TIM barrel fold related
to IGPS. Although this family of proteins are
functionally uncharacterized this domain is found as an
N-terminal domain of sigma 54 -dependent transcriptional
activators (enhancer-binding proteins) suggesting a
potential role in signal recognition/receiving and
signal transduction.
Length = 268
Score = 25.7 bits (57), Expect = 5.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 55 MIKDAEDKGLITPGKVFN 72
MI+ A +KGL+T VFN
Sbjct: 142 MIRLAHEKGLLTTPYVFN 159
>gnl|CDD|236244 PRK08329, PRK08329, threonine synthase; Validated.
Length = 347
Score = 25.6 bits (56), Expect = 6.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 37 KLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
KL+ +QP S KDR Y + +++G+
Sbjct: 77 KLDYLQPTGSFKDRGTYVTVAKLKEEGI 104
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 25.8 bits (56), Expect = 7.3
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 46 SVKDRIAYSMIKDAEDKGLITPGKVF--NGNSPILK----LINHKNYAMNSVFLFSV 96
+++ R+ + KD E K + PG VF N + I K LI Y MN+V ++ +
Sbjct: 986 AIRARLTAN--KDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGL 1040
>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing
CBS domains [Transcription].
Length = 432
Score = 25.4 bits (56), Expect = 7.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 46 SVKDRIAYSMIKDAEDKGLIT 66
V + AY IK+AE+ GL++
Sbjct: 30 KVSEGTAYRAIKEAENLGLVS 50
>gnl|CDD|181584 PRK08931, PRK08931, 5'-methylthioadenosine phosphorylase;
Provisional.
Length = 289
Score = 25.0 bits (55), Expect = 9.0
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
Query: 28 DGCVAHIAAKLEMMQP-CSSVKDRIA 52
GCVAH++ M P C + DR+A
Sbjct: 121 TGCVAHVS----MAHPVCPRLGDRLA 142
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.390
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,236,656
Number of extensions: 425565
Number of successful extensions: 365
Number of sequences better than 10.0: 1
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 41
Length of query: 108
Length of database: 10,937,602
Length adjustment: 73
Effective length of query: 35
Effective length of database: 7,699,760
Effective search space: 269491600
Effective search space used: 269491600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)