RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 033926
(108 letters)
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A*
3rr2_A
Length = 313
Score = 131 bits (332), Expect = 3e-39
Identities = 34/67 (50%), Positives = 43/67 (64%)
Query: 4 KCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
I +D+T+LIG TP+V L V DG VA I AKLE P +SVKDRI +M++ AE G
Sbjct: 3 HMSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAG 62
Query: 64 LITPGKV 70
LI P +
Sbjct: 63 LIKPDTI 69
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 133 bits (337), Expect = 6e-39
Identities = 44/68 (64%), Positives = 54/68 (79%)
Query: 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAED 61
D I +V++LIG TPMVYLN++ GCVA+IAAKLE+M+PC SVKDRI YSM+ DAE
Sbjct: 108 PDGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQ 167
Query: 62 KGLITPGK 69
KG I+PGK
Sbjct: 168 KGFISPGK 175
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 130 bits (330), Expect = 9e-39
Identities = 48/63 (76%), Positives = 55/63 (87%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I KDVTELIG+TP+VYLNNV +GCV +AAKLEMM+PCSSVKDRI +SMI DAE KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 67 PGK 69
PG+
Sbjct: 65 PGE 67
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A*
4air_A*
Length = 334
Score = 125 bits (317), Expect = 1e-36
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAED 61
+ + + + +LIG TP +YLN + + A + K+E P +SVKDR+ +++ AE
Sbjct: 6 DKSKNVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEK 64
Query: 62 KGLITPGK 69
+G + PGK
Sbjct: 65 EGKLIPGK 72
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 122 bits (309), Expect = 1e-35
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I D + IG+TP+V L + G ++ K+E P SVK RI +M+ AE G +T
Sbjct: 3 IYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLT 60
Query: 67 PGKV 70
GK
Sbjct: 61 KGKE 64
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 121 bits (307), Expect = 1e-35
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK 69
V IG TP+V L VV+ +A + KLE + P S+KDR A+ MIKDAE++G++ PG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGS 61
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural
genomics, NPPSFA, NAT project on protein structural and
functional analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 121 bits (306), Expect = 2e-35
Identities = 33/64 (51%), Positives = 39/64 (60%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
+TELIG TP V LN +VD A + KLE M P SSVKDRIA +MI+ AE G +
Sbjct: 4 TVNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLK 63
Query: 67 PGKV 70
PG
Sbjct: 64 PGDT 67
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 118 bits (299), Expect = 5e-34
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCV----AHIAAKLEMMQPCSSVKDRIAYSMIK 57
+ I ++ E IG TP+V L+ V + I KLE P SSVKDR+ ++++
Sbjct: 8 SPRKRIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVY 67
Query: 58 DAEDKGLITPGKV 70
A G + PG
Sbjct: 68 QAIKDGRLKPGME 80
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 111 bits (281), Expect = 1e-31
Identities = 26/61 (42%), Positives = 35/61 (57%)
Query: 10 DVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK 69
+ + IG+TP+V L + + + KLE P SVKDR A SMI +AE +G I PG
Sbjct: 3 TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD 62
Query: 70 V 70
V
Sbjct: 63 V 63
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 108 bits (273), Expect = 2e-30
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
+ LIG TP+V L+++ + I KLE P SVKDR A MI DAE +GL+
Sbjct: 10 HHHMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLK 65
Query: 67 PG 68
G
Sbjct: 66 NG 67
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 104 bits (262), Expect = 9e-29
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 7 IKKDVTELIGHTPMVYLNNVV-------DGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDA 59
+ + +G+TP+V L + DG + AKLE P S+KDR A MI+ A
Sbjct: 5 RYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQA 64
Query: 60 EDKGLITPGKV 70
E GL+ PG
Sbjct: 65 EADGLLRPGAT 75
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 97.8 bits (244), Expect = 2e-25
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 1 MEDKCEIKKDVTELIGHTPMVYLNNVV--DGCVAHIAAKLEMMQPCSSVKDRIAYSMIKD 58
+ + +I ++ E+IG TP+V LNN+ DG + AK E + P SVKDRI Y M++D
Sbjct: 44 IAHRQQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQD 103
Query: 59 AEDKGLITPGKV 70
AE++GL+ PG
Sbjct: 104 AEEQGLLKPGYT 115
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 95.1 bits (237), Expect = 1e-24
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 7 IKKDVTELIGHTPMVYLNNVV--DGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
I D+ + IG TPMV +N + G + AK E SVKDRI+ MI+DAE G
Sbjct: 98 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 157
Query: 65 ITPGKV 70
+ PG
Sbjct: 158 LKPGDT 163
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 84.7 bits (210), Expect = 6e-21
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 10 DVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCS-SVKDRIAYSMIKDAEDKGLITPG 68
D E TP+V + + KLE P S SVKDR A +I + + G
Sbjct: 89 DFFERGKPTPLVRSRLQLPNG-VRVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG 145
Query: 69 KV 70
+
Sbjct: 146 SL 147
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.010
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 42 QPCSSVKDRIAYSMIKDAEDKGLITPGKVFNGNS 75
QP ++ + + +D + KGLI F G+S
Sbjct: 1733 QPALTL---MEKAAFEDLKSKGLIPADATFAGHS 1763
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 32.6 bits (75), Expect = 0.014
Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 3/69 (4%)
Query: 1 MEDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIK--- 57
M E L TP+ + + K++ QP S K R K
Sbjct: 30 MGRGSEFMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWA 89
Query: 58 DAEDKGLIT 66
+
Sbjct: 90 KQGCAHFVC 98
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 30.6 bits (70), Expect = 0.058
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMI----KDAEDKGLIT 66
V ++ +P+ + D + K E Q S K R AY+M+ ++ DKG+IT
Sbjct: 54 VYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREELDKGVIT 113
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 30.7 bits (70), Expect = 0.059
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 16 GHTPMVYLNNVVD--GCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
G+TP++ +N+ G I K E + P S KDR I A + G
Sbjct: 29 GNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAG 78
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative,
tetramer, regulation, pyridoxal PHOS isoleucine
biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP:
c.79.1.1 d.58.18.2 d.58.18.2
Length = 514
Score = 29.9 bits (68), Expect = 0.11
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMI----KDAEDKGLIT 66
V E TP+ + + I K E QP S K R AY+M+ ++ + G+IT
Sbjct: 25 VYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVIT 84
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A
{Homo sapiens}
Length = 318
Score = 29.8 bits (68), Expect = 0.13
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 14 LIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIK---DAEDKGLIT 66
TP++ + + K E +QP S K R + + L+
Sbjct: 4 FHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKGCRHLVC 59
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium
tuberculosis}
Length = 360
Score = 29.6 bits (67), Expect = 0.14
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 16 GHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
G TP++ N+ I K+E + P S KDR + DA G
Sbjct: 37 GGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHG 84
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 29.4 bits (67), Expect = 0.15
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMI----KDAEDKGLIT 66
+ I T M N + C I K E MQ S K R A++ + + + KG++
Sbjct: 34 LAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTEAEKRKGVVA 93
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 28.2 bits (63), Expect = 0.46
Identities = 6/47 (12%), Positives = 15/47 (31%), Gaps = 5/47 (10%)
Query: 16 GHTPMVYLNNVVD--GCVAHIAAKLEMMQPCSSVKDR---IAYSMIK 57
G++ + + + + K + S KD + S +
Sbjct: 129 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVN 175
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A
{Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A*
1v7c_A
Length = 351
Score = 27.6 bits (62), Expect = 0.82
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 16 GHTPMVYLNNVVDGCV--AHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
G TP++ L + + AK E + P S KDR + A + G
Sbjct: 27 GSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGG 76
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 25.5 bits (57), Expect = 3.4
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 17 HTPMVY---LNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAED-KGLIT 66
TP++ L+ ++ + K E +Q S K R A S E+ KGL+
Sbjct: 20 RTPLLTSRLLDGLLG---KRLLLKAEHLQKTGSFKARGALSKALALENPKGLLA 70
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 25.2 bits (56), Expect = 4.8
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 10/59 (16%)
Query: 15 IGHTPMVY---LNNVVDGCVAHIAAKLEMMQPCSSVKDRIAY----SMIKDAEDKGLIT 66
TP++ +N A + K E Q + K R A + + G++T
Sbjct: 24 ANKTPVLTSSTVNKEFV---AEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLT 79
>1qjw_A CEL6A (Y169F), cellobiohydrolase CEL6A (formerly called CBH II);
glycosidase, glycoprotein; HET: NAG MAN MGL SGC GLC;
1.90A {Trichoderma reesei} SCOP: c.6.1.1 PDB: 1cb2_A*
3cbh_A 1hgy_A* 1hgw_A* 1qk2_A* 1qk0_A*
Length = 365
Score = 25.2 bits (54), Expect = 5.7
Identities = 8/51 (15%), Positives = 19/51 (37%)
Query: 58 DAEDKGLITPGKVFNGNSPILKLINHKNYAMNSVFLFSVNVNNFNQAHPAS 108
DA G + + + + + + ++ + NV N+N + S
Sbjct: 181 DAGHAGWLGWPANQDPAAQLFANVYKNASSPRALRGLATNVANYNGWNITS 231
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.5 bits (52), Expect = 7.0
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 9/38 (23%)
Query: 3 DKCEIKKDVTELIGHTPMVYLNNVVDGCVA-HIAAKLE 39
+K +KK L + D A I A +E
Sbjct: 18 EKQALKKLQASLKLYAD--------DSAPALAIKATME 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.390
Gapped
Lambda K H
0.267 0.0484 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,576,984
Number of extensions: 80875
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 31
Length of query: 108
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 36
Effective length of database: 4,691,481
Effective search space: 168893316
Effective search space used: 168893316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)