RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 033926
(108 letters)
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 90.7 bits (224), Expect = 6e-24
Identities = 48/63 (76%), Positives = 55/63 (87%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I KDVTELIG+TP+VYLNNV +GCV +AAKLEMM+PCSSVKDRI +SMI DAE KGLI
Sbjct: 3 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 62
Query: 67 PGK 69
PG+
Sbjct: 63 PGE 65
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine
synthase) {Haemophilus influenzae [TaxId: 727]}
Length = 310
Score = 85.0 bits (209), Expect = 8e-22
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I D + IG+TP+V L + ++ K+E P SVK RI +M+ AE G +T
Sbjct: 2 IYADNSYSIGNTPLVRLKHFGHNG--NVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLT 59
Query: 67 PGKVFNGNS 75
GK +
Sbjct: 60 KGKEIVDAT 68
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 80.8 bits (198), Expect = 3e-20
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
I +D + IGHTP+V LN + + I AK+E P SVK RI +MI DAE +G++
Sbjct: 3 IYEDNSLTIGHTPLVRLNRIGN---GRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLK 59
Query: 67 PGKVF 71
PG
Sbjct: 60 PGVEL 64
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 79.2 bits (194), Expect = 1e-19
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK 69
V IG TP+V L VV+ +A + KLE + P S+KDR A+ MIKDAE++G++ PG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGS 61
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 77.7 bits (190), Expect = 4e-19
Identities = 26/62 (41%), Positives = 35/62 (56%)
Query: 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKV 70
+ + IG+TP+V L + + + KLE P SVKDR A SMI +AE +G I PG V
Sbjct: 3 LEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV 62
Query: 71 FN 72
Sbjct: 63 LI 64
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 76.9 bits (188), Expect = 1e-18
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 7 IKKDVTELIGHTPMVYLNNVVD--GCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
I D+ + IG TPMV +N + G + AK E SVKDRI+ MI+DAE G
Sbjct: 34 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 93
Query: 65 ITPGKVF 71
+ PG
Sbjct: 94 LKPGDTI 100
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 68.6 bits (167), Expect = 9e-16
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 9 KDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPG 68
+ LIG TP+V L+++ + I KLE P SVKDR A MI DAE +GL+ G
Sbjct: 2 HMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG 57
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 61.8 bits (149), Expect = 3e-13
Identities = 15/68 (22%), Positives = 25/68 (36%)
Query: 7 IKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
++ V E TP+ + + I K E QP S K R AY+M+ ++
Sbjct: 17 LRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAH 76
Query: 67 PGKVFNGN 74
+
Sbjct: 77 GVITASAG 84
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 57.3 bits (137), Expect = 1e-11
Identities = 12/62 (19%), Positives = 22/62 (35%)
Query: 1 MEDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAE 60
++D + + TP++ + + K E +Q S K R A S E
Sbjct: 3 LQDLYAAFRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALE 62
Query: 61 DK 62
+
Sbjct: 63 NP 64
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 55.3 bits (132), Expect = 6e-11
Identities = 12/59 (20%), Positives = 23/59 (38%)
Query: 2 EDKCEIKKDVTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAE 60
+D + + + TP++ + V VA + K E Q + K R A + +
Sbjct: 6 DDVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLN 64
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 55.2 bits (132), Expect = 7e-11
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 10 DVTELIGHTPMVYLNNVV-DGCVAHIAAKLEMMQPCS-SVKDRIAYSMIKDAEDKGLITP 67
D E TP+V + +G + KLE P S SVKDR A +I + +
Sbjct: 88 DFFERGKPTPLVRSRLQLPNGV--RVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEK 143
Query: 68 GKV 70
G +
Sbjct: 144 GSL 146
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus
[TaxId: 274]}
Length = 351
Score = 53.9 bits (128), Expect = 2e-10
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 5 CEIKKDVTELIGHTPMVYLNNVV--DGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDK 62
E ++ L G TP++ L + AK E + P S KDR + A +
Sbjct: 16 SEKTPVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEG 75
Query: 63 GLITPGKVFNGNSPI 77
G GN+
Sbjct: 76 GAQAVACASTGNTAA 90
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 325
Score = 52.0 bits (123), Expect = 8e-10
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 2/81 (2%)
Query: 11 VTELIGHTPMVYLNNVVDGCVAHIAAKLEMMQ--PCSSVKDRIAYSMIKDAEDKGLITPG 68
V + TP+ YL N+ A + K + + K R ++ DA KG
Sbjct: 15 VELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVI 74
Query: 69 KVFNGNSPILKLINHKNYAMN 89
V +S + +
Sbjct: 75 TVGAVHSNHAFVTGLAAKKLG 95
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 51.6 bits (122), Expect = 1e-09
Identities = 7/62 (11%), Positives = 18/62 (29%), Gaps = 2/62 (3%)
Query: 11 VTELIGHTPMVYLNNVVD--GCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPG 68
V+ G++ + + + + K + S KD ++ +
Sbjct: 115 VSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRP 174
Query: 69 KV 70
V
Sbjct: 175 VV 176
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 319
Score = 49.0 bits (115), Expect = 1e-08
Identities = 11/53 (20%), Positives = 17/53 (32%)
Query: 14 LIGHTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLIT 66
L TP+ + + K++ QP S K R K +G
Sbjct: 4 LHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAH 56
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 47.4 bits (111), Expect = 3e-08
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 11 VTELIGHTPMVYLNNVVD--GCVAHIAAKLEMMQPCSSV---KDRIAYSMIKDAEDKG 63
G +P+ LN + G ++ AK E + K R ++ D +
Sbjct: 9 YPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGD 66
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Pseudomonas sp., strain ACP [TaxId: 306]}
Length = 338
Score = 46.6 bits (109), Expect = 8e-08
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 11 VTELIGHTPMVYLNNVVD--GCVAHIAAKLEMMQPCSSV---KDRIAYSMIKDAEDKGLI 65
G TP+ L + G H+ AK E + K R +I +A +G
Sbjct: 9 YPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCD 68
Query: 66 TPGKVFNGNS 75
T + S
Sbjct: 69 TLVSIGGIQS 78
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 39.8 bits (92), Expect = 1e-05
Identities = 9/71 (12%), Positives = 17/71 (23%), Gaps = 1/71 (1%)
Query: 6 EIKKDVTELIG-HTPMVYLNNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGL 64
+ + G T + N+ G + K E + + K A+ G
Sbjct: 43 QFADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGK 102
Query: 65 ITPGKVFNGNS 75
Sbjct: 103 SEIIAETGAGQ 113
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 36.0 bits (82), Expect = 3e-04
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 6 EIKKDVTELIGH-TPMVYLNNVVDGC-VAHIAAKLEMMQPCSSVKDRIAYSMIKDAEDKG 63
++ + G TP+ Y + + A I K E + + K A A+ G
Sbjct: 38 QLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMG 97
>d2pofa1 d.13.1.4 (A:31-250) CDP-diacylglycerol pyrophosphatase
CDH {Escherichia coli [TaxId: 562]}
Length = 220
Score = 25.6 bits (56), Expect = 1.4
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 24 NNVVDGCVAHIAAKLEMMQPCSSVKDRIAYSMIKDA 59
V++ C+ + + PC+ VK Y ++KD
Sbjct: 6 KIVLEECLPNQQQN-QNPSPCAEVKPNAGYVVLKDL 40
>d1iata_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 556
Score = 24.1 bits (51), Expect = 4.4
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 52 AYSMIKDAEDKGLITPGKVFNGNSP----ILKLINHKN------YAMNSVFLFSV--NVN 99
+ K ED + P KVF GN P + + + +F+ + ++N
Sbjct: 448 LQAAGKSPEDLERLLPHKVFEGNRPTNSIVFTKLTPFMLGALVAMYEHKIFVQGIIWDIN 507
Query: 100 NFNQ 103
+F+Q
Sbjct: 508 SFDQ 511
>d3clsd2 c.31.1.2 (D:196-318) C-terminal domain of the electron
transfer flavoprotein alpha subunit {Methylophilus
methylotrophus [TaxId: 17]}
Length = 123
Score = 23.2 bits (50), Expect = 7.1
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 15 IGHTPMVYLNNVVDGCVAHIAA 36
+ + +Y+ + G + H+A
Sbjct: 61 VVGSCKLYVAMGISGSIQHMAG 82
>d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex
aeolicus [TaxId: 63363]}
Length = 397
Score = 23.4 bits (50), Expect = 8.4
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 26 VVDGCVAHIAAKLEMMQPCSSVKDRIAYSMI---KDAEDKGLITPGKVFNGN---SPILK 79
+++G A++ E + + + Y K +D I G V G SPI
Sbjct: 21 ILEGIPANLPLSEEEINHELR-RRQRGYGRGGRMKIEKDTAEILSG-VRFGKTLGSPIAL 78
Query: 80 LINHKNY 86
I ++++
Sbjct: 79 FIRNRDW 85
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.390
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 384,001
Number of extensions: 15127
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 28
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)