Query 033928
Match_columns 108
No_of_seqs 54 out of 56
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 13:08:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pvc_A TRNA 5-methylaminomethy 44.9 6.3 0.00022 32.3 0.8 15 85-99 177-191 (689)
2 1h80_A IOTA-carrageenase; hydr 29.5 20 0.00068 29.6 1.4 15 92-106 387-401 (464)
3 3vyw_A MNMC2; tRNA wobble urid 23.6 16 0.00056 28.8 -0.0 14 86-99 193-206 (308)
4 2htj_A P fimbrial regulatory p 22.4 73 0.0025 18.8 2.8 15 83-97 62-76 (81)
5 3tr3_A BOLA; cellular processe 18.0 8.5 0.00029 25.2 -2.4 8 92-99 74-81 (82)
6 1v60_A BOLA1, riken cDNA 18100 15.9 53 0.0018 23.0 1.2 12 91-102 103-114 (123)
7 2yuy_A RHO GTPase activating p 15.8 94 0.0032 19.8 2.3 18 81-98 21-38 (126)
8 1nrp_R Receptor based peptide 14.4 55 0.0019 18.1 0.7 13 85-97 12-24 (26)
9 1nro_R Receptor based peptide 13.7 64 0.0022 17.9 0.9 14 85-98 12-25 (27)
10 2wsc_K Photosystem I reaction 11.5 50 0.0017 24.0 0.0 36 1-39 1-42 (131)
No 1
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=44.93 E-value=6.3 Score=32.29 Aligned_cols=15 Identities=33% Similarity=0.913 Sum_probs=11.8
Q ss_pred CCCccccccCCCCCC
Q 033928 85 VDGYSPIYNENDWSP 99 (108)
Q Consensus 85 VDgYSPIY~p~eWs~ 99 (108)
.||+||-+|||-|++
T Consensus 177 lD~f~p~~np~~w~~ 191 (689)
T 3pvc_A 177 LDGFAPAKNPDMWNE 191 (689)
T ss_dssp ECSSCC--CCTTCSH
T ss_pred ECCCCCCCChhhhhH
Confidence 599999999999975
No 2
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A
Probab=29.48 E-value=20 Score=29.58 Aligned_cols=15 Identities=33% Similarity=0.906 Sum_probs=13.6
Q ss_pred ccCCCCCCCCCeecc
Q 033928 92 YNENDWSPSGDVYTG 106 (108)
Q Consensus 92 Y~p~eWs~~GD~Y~G 106 (108)
++||||+.+|..|.|
T Consensus 387 ~~~~~~~~~~~~~~~ 401 (464)
T 1h80_A 387 PTKEQWSKQGQIYIG 401 (464)
T ss_dssp CCTTTCSSTTSCEEE
T ss_pred cCCccccCCCcEEeC
Confidence 579999999999987
No 3
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=23.64 E-value=16 Score=28.84 Aligned_cols=14 Identities=36% Similarity=0.736 Sum_probs=13.3
Q ss_pred CCccccccCCCCCC
Q 033928 86 DGYSPIYNENDWSP 99 (108)
Q Consensus 86 DgYSPIY~p~eWs~ 99 (108)
||+||-=+||-|++
T Consensus 193 DgFsP~kNPeLWs~ 206 (308)
T 3vyw_A 193 DAFSPYKNPELWTL 206 (308)
T ss_dssp CCSCTTTSGGGGSH
T ss_pred CCCCcccCcccCCH
Confidence 99999999999986
No 4
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=22.44 E-value=73 Score=18.84 Aligned_cols=15 Identities=13% Similarity=-0.028 Sum_probs=12.3
Q ss_pred cCCCCccccccCCCC
Q 033928 83 ANVDGYSPIYNENDW 97 (108)
Q Consensus 83 ANVDgYSPIY~p~eW 97 (108)
..+.+.+++||.-|-
T Consensus 62 ~~~~~~~~~~~~~~~ 76 (81)
T 2htj_A 62 EKQAGQSCSSTTLEH 76 (81)
T ss_dssp CSSSSCGGGGCSSSC
T ss_pred hhhccHHHHHhHHhh
Confidence 488999999998653
No 5
>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}
Probab=17.97 E-value=8.5 Score=25.21 Aligned_cols=8 Identities=13% Similarity=0.671 Sum_probs=4.7
Q ss_pred ccCCCCCC
Q 033928 92 YNENDWSP 99 (108)
Q Consensus 92 Y~p~eWs~ 99 (108)
|||+||..
T Consensus 74 ~Tp~Ew~~ 81 (82)
T 3tr3_A 74 YTPDEYER 81 (82)
T ss_dssp ECHHHHHC
T ss_pred CCHHHHhc
Confidence 56666643
No 6
>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=15.90 E-value=53 Score=23.04 Aligned_cols=12 Identities=8% Similarity=0.318 Sum_probs=9.0
Q ss_pred cccCCCCCCCCC
Q 033928 91 IYNENDWSPSGD 102 (108)
Q Consensus 91 IY~p~eWs~~GD 102 (108)
.|||+||.....
T Consensus 103 t~TP~Ew~~~~~ 114 (123)
T 1v60_A 103 AKTPAQWRENPQ 114 (123)
T ss_dssp EECTTTTTTCCC
T ss_pred ecCHHHHHhccC
Confidence 489999987543
No 7
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=15.77 E-value=94 Score=19.84 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=15.7
Q ss_pred cccCCCCccccccCCCCC
Q 033928 81 YGANVDGYSPIYNENDWS 98 (108)
Q Consensus 81 yGANVDgYSPIY~p~eWs 98 (108)
||.++|+|+--++|+++.
T Consensus 21 ~Gf~l~~~t~y~~~~~~~ 38 (126)
T 2yuy_A 21 FGFTLRHFIVYPPESAIQ 38 (126)
T ss_dssp CSCCBCCCCCCCCSSCCC
T ss_pred cceeecCccccCCHHHHH
Confidence 688999999988888886
No 8
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=14.40 E-value=55 Score=18.07 Aligned_cols=13 Identities=23% Similarity=0.695 Sum_probs=10.3
Q ss_pred CCCccccccCCCC
Q 033928 85 VDGYSPIYNENDW 97 (108)
Q Consensus 85 VDgYSPIY~p~eW 97 (108)
-|-|.|.|..||.
T Consensus 12 ndkyepfwedee~ 24 (26)
T 1nrp_R 12 NDKYEPFWEDEEX 24 (26)
T ss_pred CcccCcccccccc
Confidence 3789999988774
No 9
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=13.67 E-value=64 Score=17.93 Aligned_cols=14 Identities=21% Similarity=0.636 Sum_probs=10.4
Q ss_pred CCCccccccCCCCC
Q 033928 85 VDGYSPIYNENDWS 98 (108)
Q Consensus 85 VDgYSPIY~p~eWs 98 (108)
-|-|.|.|..+|=.
T Consensus 12 ndkyepfwedeekn 25 (27)
T 1nro_R 12 NDKYEPFWEDEEKN 25 (27)
T ss_pred CcccCccccchhhc
Confidence 37889999877643
No 10
>2wsc_K Photosystem I reaction center subunit PSAK, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Hordeum vulgare} PDB: 2wse_K* 2wsf_K* 3lw5_K*
Probab=11.45 E-value=50 Score=24.01 Aligned_cols=36 Identities=31% Similarity=0.302 Sum_probs=0.0
Q ss_pred Cchhhcc--c---cccccCCccccccccccCCCCC-ccceeEEee
Q 033928 1 MAASVMA--S---SLSLKPAPFTVEKSAARGLPSL-AKTSFKIVA 39 (108)
Q Consensus 1 MAasvm~--s---s~~lkps~~~~~~~~~~glp~l-~R~s~~v~a 39 (108)
||+|+++ | .-.|+|+. ...+++.+|+. .|+++.+.|
T Consensus 1 ma~~~~~~~~~p~f~glr~~~---~~~~~~~~~~~~~r~~~~~r~ 42 (131)
T 2wsc_K 1 MASQLSAMTSVPQFHGLRTYS---SPRSMATLPSLRRRRSQGIRC 42 (131)
T ss_dssp ---------------------------------------------
T ss_pred CcchhhccccCcccccccccC---CccccccccccccccceeeEe
Confidence 7888743 1 11344433 11144455554 445555544
Done!