Query 033928
Match_columns 108
No_of_seqs 54 out of 56
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 13:08:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033928.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033928hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dlja3 c.26.3.1 (A:295-402) U 40.3 1.6 0.00011 27.3 -1.3 41 55-96 22-62 (108)
2 d2doaa1 a.4.5.81 (A:8-98) RNA 18.4 22 0.0016 21.6 1.3 25 72-96 55-79 (91)
3 d2hqsa1 b.68.4.1 (A:163-431) T 17.4 11 0.00078 23.3 -0.4 9 96-104 45-53 (269)
4 d1d5ra1 b.7.1.1 (A:188-351) Pt 12.4 1E+02 0.0076 19.5 3.6 40 13-52 2-45 (141)
5 d1uala_ c.116.1.4 (A:) tRNA(m1 12.3 30 0.0022 25.3 0.8 18 43-60 49-66 (252)
6 d1oy5a_ c.116.1.4 (A:) tRNA(m1 11.7 33 0.0024 24.8 0.9 18 43-60 47-64 (232)
7 d1soua_ c.124.1.6 (A:) Hypothe 11.3 29 0.0021 22.9 0.4 16 61-76 121-137 (194)
8 d1w1oa1 d.58.32.4 (A:246-534) 9.4 10 0.00075 28.3 -2.8 26 73-98 231-257 (289)
9 d1mv8a3 c.26.3.1 (A:301-436) G 8.9 10 0.00076 23.4 -2.5 38 55-93 20-57 (136)
10 d2vzsa1 b.1.4.1 (A:226-335) Ex 8.8 51 0.0037 19.2 0.9 12 90-101 69-80 (110)
No 1
>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}
Probab=40.29 E-value=1.6 Score=27.26 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=34.7
Q ss_pred CcccCcCcCCCCCCccCCeeEEeccccccCCCCccccccCCC
Q 033928 55 GMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNEND 96 (108)
Q Consensus 55 gm~~k~gvDasGRk~KgkgVYqf~~KyGANVDgYSPIY~p~e 96 (108)
|+.+|.++|- -|.-..--+++.-.++|++|.-|=|..+..+
T Consensus 22 Gl~fK~n~dD-~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~ 62 (108)
T d1dlja3 22 RLIMKSNSDN-FRESAIKDVIDILKSKDIKIIIYEPMLNKLE 62 (108)
T ss_dssp CCCSSTTCSC-CTTCHHHHHHHHHHTSSCEEEEECTTCSCCC
T ss_pred EEEECCCCcc-hhhhhHHHHHHHHhccccceeeecCCcChhH
Confidence 6789999985 5777888899999999999999999886543
No 2
>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.40 E-value=22 Score=21.62 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.0
Q ss_pred CeeEEeccccccCCCCccccccCCC
Q 033928 72 KGVYQFVDKYGANVDGYSPIYNEND 96 (108)
Q Consensus 72 kgVYqf~~KyGANVDgYSPIY~p~e 96 (108)
.|+|.+=+.|=..||-|-|-||.+|
T Consensus 55 ~g~Y~LK~~~~~Evdp~~~~Ys~~d 79 (91)
T d2doaa1 55 DGTCTLQDCMYKDVQKDWPGYSEGD 79 (91)
T ss_dssp SCEEECCSSGGGGCCSCCTTCCSHH
T ss_pred CceEeeHHHHHhHcCccCCCCCHHH
Confidence 4789999999999999999998764
No 3
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=17.43 E-value=11 Score=23.28 Aligned_cols=9 Identities=44% Similarity=1.095 Sum_probs=6.5
Q ss_pred CCCCCCCee
Q 033928 96 DWSPSGDVY 104 (108)
Q Consensus 96 eWs~~GD~Y 104 (108)
.|||+|..-
T Consensus 45 ~wSPDGk~I 53 (269)
T d2hqsa1 45 AWSPDGSKL 53 (269)
T ss_dssp EECTTSSEE
T ss_pred EECCCCCEE
Confidence 588888753
No 4
>d1d5ra1 b.7.1.1 (A:188-351) Pten tumor suppressor (Phoshphoinositide phosphatase), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.42 E-value=1e+02 Score=19.46 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=28.1
Q ss_pred cCCccccccccccCCCCCc----cceeEEeecCceeeecccccc
Q 033928 13 KPAPFTVEKSAARGLPSLA----KTSFKIVAKGGKIKTDKPYGV 52 (108)
Q Consensus 13 kps~~~~~~~~~~glp~l~----R~s~~v~asggKikt~kp~G~ 52 (108)
+|.+..|..-.++++|... |.-|+|.....|+-+++++..
T Consensus 2 ~P~~L~L~~I~l~~vP~f~~ggCrP~~~I~~~~~~v~ts~~~~~ 45 (141)
T d1d5ra1 2 RPVALLFHKMMFETIPMFSGGTCNPQFVVCQLKVKIYSSNSGPT 45 (141)
T ss_dssp CCCEEEEEEEEESSCCCSBTTBCCEEEEEEETTEEEEECCSSCS
T ss_pred CCEeEEEEEEEEECCCccCCCeeEEEEEEEcCCeEEEecCcEeE
Confidence 5666666666677777774 567888776668888876544
No 5
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]}
Probab=12.31 E-value=30 Score=25.35 Aligned_cols=18 Identities=39% Similarity=0.591 Sum_probs=14.2
Q ss_pred eeeeccccccCCCcccCc
Q 033928 43 KIKTDKPYGVNGGMDLRE 60 (108)
Q Consensus 43 Kikt~kp~G~~ggm~~k~ 60 (108)
+.-=|+|||.+.||-+|-
T Consensus 49 r~VDD~PyGGGpGMVmk~ 66 (252)
T d1uala_ 49 KTVDDRPYGGGPGMLMMV 66 (252)
T ss_dssp CCCEECCTTCCSCCEECH
T ss_pred cCcCCCcCCCCCcceeec
Confidence 444578999999998864
No 6
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex aeolicus [TaxId: 63363]}
Probab=11.70 E-value=33 Score=24.81 Aligned_cols=18 Identities=39% Similarity=0.493 Sum_probs=13.9
Q ss_pred eeeeccccccCCCcccCc
Q 033928 43 KIKTDKPYGVNGGMDLRE 60 (108)
Q Consensus 43 Kikt~kp~G~~ggm~~k~ 60 (108)
|---|+|||.+.||-++-
T Consensus 47 k~VDD~PyGGGpGMVm~~ 64 (232)
T d1oy5a_ 47 GQVDDVPYGGLPGMVLKP 64 (232)
T ss_dssp SCCEECBSSCCSSCEECH
T ss_pred CCcCccccCCCCceEEeh
Confidence 334478999999998764
No 7
>d1soua_ c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquifex aeolicus [TaxId: 63363]}
Probab=11.29 E-value=29 Score=22.89 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=12.1
Q ss_pred CcCCC-CCCccCCeeEE
Q 033928 61 GLDAS-GRKAKGKGVYQ 76 (108)
Q Consensus 61 gvDas-GRk~KgkgVYq 76 (108)
+.|.+ .|-|.|+|-|.
T Consensus 121 afD~~G~RlG~G~GyYD 137 (194)
T d1soua_ 121 AFDLEGYRLGFGKGYYD 137 (194)
T ss_dssp CBCSSSCBCCSCCSSHH
T ss_pred HHhhcCCccccCCEeHH
Confidence 55555 48999999884
No 8
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]}
Probab=9.37 E-value=10 Score=28.35 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=21.9
Q ss_pred eeEEeccccccCCCCccccccC-CCCC
Q 033928 73 GVYQFVDKYGANVDGYSPIYNE-NDWS 98 (108)
Q Consensus 73 gVYqf~~KyGANVDgYSPIY~p-~eWs 98 (108)
-+++|+++.|.++--|=|.|+. +||.
T Consensus 231 ~il~~c~~aG~~~k~yl~~~~t~~dW~ 257 (289)
T d1w1oa1 231 RILRFCDLAGIQYKTYLARHTDRSDWV 257 (289)
T ss_dssp HHHHHHHHTTCCCEESSCCCSSHHHHH
T ss_pred HHHHHHHHcCCcceEeCCCCCCHHHHH
Confidence 3789999999999999999976 6673
No 9
>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.93 E-value=10 Score=23.43 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=30.0
Q ss_pred CcccCcCcCCCCCCccCCeeEEeccccccCCCCcccccc
Q 033928 55 GMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYN 93 (108)
Q Consensus 55 gm~~k~gvDasGRk~KgkgVYqf~~KyGANVDgYSPIY~ 93 (108)
|++||.++|- -|--..--+.+.-.+.|++|.-|=|.-+
T Consensus 20 GlafK~~t~D-~R~Sps~~li~~L~~~g~~V~~~DP~v~ 57 (136)
T d1mv8a3 20 GLSFKAGTDD-LRESPLVELAEMLIGKGYELRIFDRNVE 57 (136)
T ss_dssp CCSSSTTCCC-CTTCHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred EEEECCCCcc-hhcCHHHHHHHHHhhhhccccccCCCCC
Confidence 7889988874 5777777788888889999999888543
No 10
>d2vzsa1 b.1.4.1 (A:226-335) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]}
Probab=8.75 E-value=51 Score=19.24 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=10.2
Q ss_pred ccccCCCCCCCC
Q 033928 90 PIYNENDWSPSG 101 (108)
Q Consensus 90 PIY~p~eWs~~G 101 (108)
+|=+|+-|+|.|
T Consensus 69 ~i~~p~LW~P~~ 80 (110)
T d2vzsa1 69 GLDRPNVWWPAG 80 (110)
T ss_dssp EEESCCCCCCTT
T ss_pred EeCCCceeCCCC
Confidence 688999999875
Done!