BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033929
(108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 102 bits (254), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 67/98 (68%), Gaps = 3/98 (3%)
Query: 10 DEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSV 69
DEGV+K I R+ + D V VHY G L + G FD++ + FSF+LGKG V
Sbjct: 34 DEGVLKVIKREGTGTEMPMIGDR--VFVHYTGWLLD-GTKFDSSLDRKDKFSFDLGKGEV 90
Query: 70 IRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPP 107
I+AWDIA+ +MKVGEV +TCKPEYAYGSAGSPP +PP
Sbjct: 91 IKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPP 128
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 102 bits (253), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 67/98 (68%), Gaps = 3/98 (3%)
Query: 10 DEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSV 69
DEGV+K I R+ + D V VHY G L + G FD++ + FSF+LGKG V
Sbjct: 30 DEGVLKVIKREGTGTEMPMIGDR--VFVHYTGWLLD-GTKFDSSLDRKDKFSFDLGKGEV 86
Query: 70 IRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPP 107
I+AWDIA+ +MKVGEV +TCKPEYAYGSAGSPP +PP
Sbjct: 87 IKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPP 124
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 102 bits (253), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 67/98 (68%), Gaps = 3/98 (3%)
Query: 10 DEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSV 69
DEGV+K I R+ + D V VHY G L + G FD++ + FSF+LGKG V
Sbjct: 50 DEGVLKVIKREGTGTEMPMIGDR--VFVHYTGWLLD-GTKFDSSLDRKDKFSFDLGKGEV 106
Query: 70 IRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPP 107
I+AWDIA+ +MKVGEV +TCKPEYAYGSAGSPP +PP
Sbjct: 107 IKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPP 144
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 15/108 (13%)
Query: 6 DLTGDE--GVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFE 63
DLT +E G+I++I Q + + + + +V+V EG + ++FD FE
Sbjct: 161 DLTEEEDGGIIRRI--QTRGEGYAKPNEGAIVEVALEGYYKD--KLFDQRE-----LRFE 211
Query: 64 LGKGSVI---RAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPP-DVPP 107
+G+G + + A++ M+ GE + + KP YA+GS G +PP
Sbjct: 212 IGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPP 259
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 67/98 (68%), Gaps = 3/98 (3%)
Query: 10 DEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSV 69
DEGV+K I R+ D V VHY G L + G FD++ + FSF+LGKG V
Sbjct: 29 DEGVLKVIKREGTGTETPMIGDR--VFVHYTGWLLD-GTKFDSSLDRKDKFSFDLGKGEV 85
Query: 70 IRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPP 107
I+AWDIA+ +MKVGE+ ++TCKPEYAYGSAGSPP +PP
Sbjct: 86 IKAWDIAVATMKVGELCRITCKPEYAYGSAGSPPKIPP 123
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 68/110 (61%), Gaps = 11/110 (10%)
Query: 1 MGDSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVD----VHYEGSLAETGEVFDTTHED 56
G+ I D GV+K + R + E+ P++ VHY+G L+ G+ FD++H+
Sbjct: 21 QGEDITSKKDRGVLKIVKR------VGNGEETPMIGDKVYVHYKGKLS-NGKKFDSSHDR 73
Query: 57 NTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVP 106
N F F LGKG VI+AWDI + +MK GE+ L CKPEYAYGSAGS P +P
Sbjct: 74 NEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPKIP 123
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 12/100 (12%)
Query: 6 DLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELG 65
DL D G+I++ R K + S + V++H EG G +FD +F +G
Sbjct: 141 DLFEDGGIIRRTKR--KGEGYSNPNEGATVEIHLEGRCG--GRMFDCRD-----VAFTVG 191
Query: 66 KGS---VIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSP 102
+G + D AL M+ E L P Y +G AG P
Sbjct: 192 EGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKP 231
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 68/109 (62%), Gaps = 11/109 (10%)
Query: 2 GDSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVD----VHYEGSLAETGEVFDTTHEDN 57
G+ I D GV+K + R + E+ P++ VHY+G L+ G+ FD++H+ N
Sbjct: 26 GEDITSKKDRGVLKIVKR------VGNGEETPMIGDKVYVHYKGKLS-NGKKFDSSHDRN 78
Query: 58 TVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVP 106
F F LGKG VI+AWDI + +MK GE+ L CKPEYAYGSAGS P +P
Sbjct: 79 EPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIP 127
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 68/109 (62%), Gaps = 11/109 (10%)
Query: 2 GDSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVD----VHYEGSLAETGEVFDTTHEDN 57
G+ I D GV+K + R + E+ P++ VHY+G L+ G+ FD++H+ N
Sbjct: 26 GEDITSKKDRGVLKIVKR------VGNGEETPMIGDKVYVHYKGKLS-NGKKFDSSHDRN 78
Query: 58 TVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVP 106
F F LGKG VI+AWDI + +MK GE+ L CKPEYAYGSAGS P +P
Sbjct: 79 EPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIP 127
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 68/110 (61%), Gaps = 11/110 (10%)
Query: 1 MGDSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVD----VHYEGSLAETGEVFDTTHED 56
G+ I D GV+K + R + E+ P++ VHY+G L+ G+ FD++H+
Sbjct: 25 QGEDITSKKDRGVLKIVKR------VGNGEETPMIGDKVYVHYKGKLS-NGKKFDSSHDR 77
Query: 57 NTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVP 106
N F F LGKG VI+AWDI + +MK GE+ L CKPEYAYGSAGS P +P
Sbjct: 78 NEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIP 127
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 12/100 (12%)
Query: 6 DLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELG 65
DL D G+I++ R K + S + V++H EG G +FD +F +G
Sbjct: 145 DLFEDGGIIRRTKR--KGEGYSNPNEGATVEIHLEGRCG--GRMFDCRD-----VAFTVG 195
Query: 66 KGS---VIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSP 102
+G + D AL M+ E L P Y +G AG P
Sbjct: 196 EGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKP 235
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 68/110 (61%), Gaps = 11/110 (10%)
Query: 1 MGDSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVD----VHYEGSLAETGEVFDTTHED 56
G+ I D GV+K + R + E+ P++ VHY+G L+ G+ FD++H+
Sbjct: 9 QGEDITSKKDRGVLKIVKR------VGNGEETPMIGDKVYVHYKGKLS-NGKKFDSSHDR 61
Query: 57 NTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVP 106
N F F LGKG VI+AWDI + +MK GE+ L CKPEYAYGSAGS P +P
Sbjct: 62 NEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIP 111
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 95.9 bits (237), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 68/110 (61%), Gaps = 11/110 (10%)
Query: 1 MGDSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVD----VHYEGSLAETGEVFDTTHED 56
G+ I D GV+K + R + E+ P++ VHY+G L+ G+ FD++H+
Sbjct: 9 QGEDITSKKDRGVLKIVKR------VGNGEETPMIGDKVYVHYKGKLS-NGKKFDSSHDR 61
Query: 57 NTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVP 106
N F F LGKG VI+AWDI + +MK GE+ L CKPEYAYGSAGS P +P
Sbjct: 62 NEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIP 111
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 90.9 bits (224), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/109 (43%), Positives = 66/109 (60%), Gaps = 11/109 (10%)
Query: 2 GDSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVD----VHYEGSLAETGEVFDTTHEDN 57
G+ + D GV+K + R + E+ P++ VHY G LA G+ FD++H+ N
Sbjct: 22 GEDVTSKKDRGVLKIVKR------VGHGEETPMIGDRVYVHYNGKLA-NGKKFDSSHDRN 74
Query: 58 TVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVP 106
F F +GKG VI+AWDI + +MK GE+ L CKPEYAYG+ GS P +P
Sbjct: 75 EPFVFSIGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGATGSLPKIP 123
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 12/100 (12%)
Query: 6 DLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELG 65
DL D G+I++ R+ + S + V +H EG G VFD +F +G
Sbjct: 141 DLLEDGGIIRRTKRRG--EGYSNPNEGARVQIHLEGRCG--GRVFDCRD-----VAFTVG 191
Query: 66 KGS---VIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSP 102
+G + D AL M+ E L P Y +G AG P
Sbjct: 192 EGEDHDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKP 231
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 3/106 (2%)
Query: 2 GDSIDLT-GDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVF 60
G+ ID+T +G + K++++ + PT V VHY G+L E G FD++ + F
Sbjct: 3 GEKIDITPKKDGGVLKLIKKEGQGVVKPTTGTT-VKVHYVGTL-ENGTKFDSSRDRGDQF 60
Query: 61 SFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVP 106
SF LG+G+VI+ WD+ + +M GEVA+ T + +Y YG AGSPP +P
Sbjct: 61 SFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIP 106
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 96
VHY G+LA+ G+VFD++ F F +G+G VIR WD + M VG+ AKL C P+YAY
Sbjct: 25 VHYTGTLAD-GKVFDSSRTRGKPFRFTVGRGEVIRGWDEGVAQMSVGQRAKLVCSPDYAY 83
Query: 97 GSAGSPPDVPPE 108
GS G P +PP
Sbjct: 84 GSRGHPGVIPPN 95
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 56/104 (53%)
Query: 3 DSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSF 62
+ + LT D GV+K I+R+ + + + V VHY G L +G+VFD++ E N F F
Sbjct: 7 EQVHLTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKF 66
Query: 63 ELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVP 106
LG+G VI+ WDI + SM E + +Y YG G +P
Sbjct: 67 HLGQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIP 110
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEY 94
V+VHY G+L + G+ FD++ + + F F+LG+G VI+ WD +++MK GE A T PE
Sbjct: 33 VEVHYTGTLLD-GKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIPPEL 91
Query: 95 AYGSAGSPPDVP 106
AYG +GSPP +P
Sbjct: 92 AYGESGSPPTIP 103
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 10 DEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSV 69
D+ ++KK++++ + + +V V G L + H++ F F+ + +V
Sbjct: 243 DKKILKKVLKEX--EGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAV 300
Query: 70 IRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPD--VPP 107
I D A+ +MK GEVA +T PEYAYGS S D VPP
Sbjct: 301 IEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPP 340
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 19/103 (18%)
Query: 6 DLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFS---- 61
D+ D G+ KKI+++ D +D V V YE L ED TV S
Sbjct: 122 DIAKDGGIFKKILKEG--DKWENPKDPDEVFVKYEARL-----------EDGTVVSKSEG 168
Query: 62 --FELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSP 102
F + G + A A+++MK GE L KP+Y +G G P
Sbjct: 169 VEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRP 211
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEY 94
V+VHY G+L + G+ FD++ + + F F+LG+G VI+ WD +++MK GE A T PE
Sbjct: 49 VEVHYTGTLLD-GKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIPPEL 107
Query: 95 AYGSAGSPPDVP 106
AYG +GSPP +P
Sbjct: 108 AYGESGSPPTIP 119
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 10 DEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSV 69
D+ ++KK++++ + + +V V G L + H++ F F+ + +V
Sbjct: 259 DKKILKKVLKEX--EGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAV 316
Query: 70 IRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPD--VPP 107
I D A+ +MK GEVA +T PEYAYGS S D VPP
Sbjct: 317 IEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPP 356
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 19/103 (18%)
Query: 6 DLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFS---- 61
D+ D G+ KKI+++ D +D V V YE L ED TV S
Sbjct: 138 DIAKDGGIFKKILKEG--DKWENPKDPDEVFVKYEARL-----------EDGTVVSKSEG 184
Query: 62 --FELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSP 102
F + G + A A+++MK GE L KP+Y +G G P
Sbjct: 185 VEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRP 227
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%)
Query: 3 DSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSF 62
+ ++LT D GVIK I+++ + + V VHY G L TG+VFD++ + N F F
Sbjct: 8 EKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKF 67
Query: 63 ELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVP 106
L +G VI+ WDI + SM+ E + + Y YG G +P
Sbjct: 68 HLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIP 111
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%)
Query: 3 DSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSF 62
+ ++LT D GVIK I+++ + + V VHY G L TG+VFD++ + N F F
Sbjct: 8 EKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKF 67
Query: 63 ELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVP 106
L +G VI+ WDI + SM+ E + + Y YG G +P
Sbjct: 68 HLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIP 111
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 5 IDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFEL 64
+D++GD GV+K ++R+ D ++P V V Y G L FD+ + T +L
Sbjct: 20 LDISGDRGVLKDVIREGAGDLVAPDAS---VLVKYSGYLEHMDRPFDSNYFRKTPRLMKL 76
Query: 65 GKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPE 108
G+ + ++ L SM+ GE+A+ KP YAYG+ G PP +PP
Sbjct: 77 GEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPN 120
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 96
VHY G L E G+ FD++ + N F F LGK VIR W+ + M VG+ AKLT P+YAY
Sbjct: 26 VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAY 84
Query: 97 GSAGSPPDVPPE 108
G+ G P +PP
Sbjct: 85 GATGHPGIIPPH 96
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 96
VHY G L E G+ FD++ + N F F LGK VIR W+ + M VG+ AKLT P+YAY
Sbjct: 24 VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAY 82
Query: 97 GSAGSPPDVPPE 108
G+ G P +PP
Sbjct: 83 GATGHPGIIPPH 94
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 96
VHY G L E G+ FD++ + N F F LGK VIR W+ + M VG+ AKLT P+YAY
Sbjct: 24 VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAY 82
Query: 97 GSAGSPPDVPPE 108
G+ G P +PP
Sbjct: 83 GATGHPGIIPPH 94
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 96
VHY G L E G+ FD++ + N F F LGK VIR W+ + M VG+ AKLT P+YAY
Sbjct: 24 VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAY 82
Query: 97 GSAGSPPDVPPE 108
G+ G P +PP
Sbjct: 83 GATGHPGIIPPH 94
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 96
VHY G L E G+ FD++ + N F F LGK VIR W+ + M VG+ AKLT P+YAY
Sbjct: 24 VHYTGML-EDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAY 82
Query: 97 GSAGSPPDVPPE 108
G+ G P +PP
Sbjct: 83 GATGVPGIIPPH 94
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 96
VHY G L E G+ FD++ + N F F LGK VIR W+ + M VG+ AKLT P+YAY
Sbjct: 24 VHYTGML-EDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAY 82
Query: 97 GSAGSPPDVPPE 108
G+ G P +PP
Sbjct: 83 GATGHPGIIPPN 94
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 96
VHY G L E G+ FD++ + N F F LGK VIR W + M VG+ AKLT P+YAY
Sbjct: 24 VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWQEGVAQMSVGQRAKLTISPDYAY 82
Query: 97 GSAGSPPDVPPE 108
G+ G P +PP
Sbjct: 83 GATGHPGIIPPH 94
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 96
VHY G L E G+ FD++ + N F F LGK VIR W + M VG+ AKLT P+YAY
Sbjct: 24 VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWAEGVAQMSVGQRAKLTISPDYAY 82
Query: 97 GSAGSPPDVPPE 108
G+ G P +PP
Sbjct: 83 GATGHPGIIPPH 94
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 96
VHY G L E G+ D++ + N F F LGK VIR W+ + M VG+ AKLT P+YAY
Sbjct: 24 VHYTGML-EDGKKMDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAY 82
Query: 97 GSAGSPPDVPPE 108
G+ G P +PP
Sbjct: 83 GATGHPGIIPPH 94
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 96
VHY G L E G+ D++ + N F F LGK VIR W+ + M VG+ AKLT P+YAY
Sbjct: 24 VHYTGML-EDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAY 82
Query: 97 GSAGSPPDVPPE 108
G+ G P +PP
Sbjct: 83 GATGHPGIIPPH 94
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 96
VHY G L E G+ FD++ + N F F LGK VIR ++ + M VG+ AKLT P+YAY
Sbjct: 24 VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGFEEGVAQMSVGQRAKLTISPDYAY 82
Query: 97 GSAGSPPDVPPE 108
G+ G P +PP
Sbjct: 83 GATGHPGIIPPH 94
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 96
VHY G L E G+ FD++ + N F F LGK VIR + + M VG+ AKLT P+YAY
Sbjct: 24 VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGLEEGVAQMSVGQRAKLTISPDYAY 82
Query: 97 GSAGSPPDVPPE 108
G+ G P +PP
Sbjct: 83 GATGHPGIIPPH 94
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEY 94
V VHY G L + G+ FD++ + N F+F LG G VI+ WD ++ MKVG V +LT P+
Sbjct: 49 VSVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQL 107
Query: 95 AYGSAGSPPDVPPE 108
YG+ G+ +PP
Sbjct: 108 GYGARGAGGVIPPN 121
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEY 94
V VHY G L + G+ FD++ + N F+F LG G VI+ WD ++ MKVG V +LT P+
Sbjct: 33 VSVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQL 91
Query: 95 AYGSAGSPPDVPPE 108
YG+ G+ +PP
Sbjct: 92 GYGARGAGGVIPPN 105
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEY 94
V VHY G L + G+ FD++ + N F+F LG G VI+ WD ++ MKVG V +LT P+
Sbjct: 125 VSVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQL 183
Query: 95 AYGSAGSPPDVPP 107
YG+ G+ +PP
Sbjct: 184 GYGARGAAGVIPP 196
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEY 94
V VHY G L + G+ FD++ + N F+F LG G VI+ WD ++ MKVG V +LT P+
Sbjct: 29 VSVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGHVIKGWDEGVQGMKVGGVRRLTIPPQL 87
Query: 95 AYGSAGSPPDVPPE 108
YG+ G+ +PP
Sbjct: 88 GYGARGAGGVIPPN 101
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEY 94
V VHY G L + G+ FD++ + N F+F LG G VI+ WD ++ MKVG V +LT P+
Sbjct: 125 VSVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQL 183
Query: 95 AYGSAGSPPDVPP 107
YG+ G+ +PP
Sbjct: 184 GYGARGAGGVIPP 196
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEY 94
V VHY G L + G+ FD++ + N F+F LG G VI+ WD ++ MKVG V +LT P+
Sbjct: 125 VSVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQL 183
Query: 95 AYGSAGSPPDVPP 107
YG+ G+ +PP
Sbjct: 184 GYGARGAGGVIPP 196
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 37 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 96
VHY G L + G+ FD++ + N F F +GK VI+ ++ M +G+ AKLTC P+ AY
Sbjct: 24 VHYTGML-QNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAY 82
Query: 97 GSAGSPPDVPPE 108
G+ G P +PP
Sbjct: 83 GATGHPGVIPPN 94
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEY 94
V VHY G L + G+ FD++ + N F F LG G VI+ WD ++ MKVG V +LT P+
Sbjct: 125 VSVHYTGWLTD-GQKFDSSKDRNDPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQL 183
Query: 95 AYGSAGSPPDVPP 107
YG+ G+ +PP
Sbjct: 184 GYGARGAGGVIPP 196
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 34 LVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPE 93
LV +HY G+L E G+ FD++ + + F +G G VI+ WD+ + + VGE A+LT
Sbjct: 27 LVTIHYTGTL-ENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPGP 85
Query: 94 YAYGSAGSPPDVPPE 108
YAYG G P +PP
Sbjct: 86 YAYGPRGFPGLIPPN 100
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEY 94
V VHY G L + G+ F ++ + N F+F LG G VI+ WD ++ MKVG V +LT P+
Sbjct: 125 VSVHYTGWLTD-GQKFGSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQL 183
Query: 95 AYGSAGSPPDVPP 107
YG+ G+ +PP
Sbjct: 184 GYGARGAGGVIPP 196
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEY 94
V VHY+G + G+ FD++ F F LG G VI+ WD + +M +GE A T +
Sbjct: 46 VTVHYDGRFPD-GKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQL 104
Query: 95 AYGSAGSPPDVPPE 108
AYG G PP +PP+
Sbjct: 105 AYGERGYPPVIPPK 118
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 34 LVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPE 93
++ +HY G L E G FD++ N F F LG G VI+ WD L M GE KL E
Sbjct: 11 VLHMHYTGKL-EDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSE 69
Query: 94 YAYGSAGSPPDVP 106
YG G+PP +P
Sbjct: 70 LGYGERGAPPKIP 82
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 34 LVDVHYEGSLAETGEVFDTT-------HEDNTVFSFELGKGSVIRAWDIALRSMKVGEVA 86
+V Y G+L + G VFDT ++ SF++G G VIR WD AL +M GE A
Sbjct: 22 VVHCWYTGTLQD-GTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKA 80
Query: 87 KLTCKPEYAYGSAGSP-PDVPPE 108
+L +PE+AYG G P +PP
Sbjct: 81 RLEIEPEWAYGKKGQPDAKIPPN 103
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 34 LVDVHYEGSLAETGEVFDTTHEDNTV-------FSFELGKGSVIRAWDIALRSMKVGEVA 86
+V Y G+L + G VFDT + ++ SF++G G VIR WD AL +M GE A
Sbjct: 25 VVHCWYTGTLPD-GTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKA 83
Query: 87 KLTCKPEYAYGSAGSP-PDVPPE 108
+L +PE+AYG G P +PP
Sbjct: 84 RLEIEPEWAYGKKGQPDAKIPPN 106
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEY 94
V VHY G L + G+ FD++ + N F+F LG G VI+ WD ++ MKVG V +LT P+
Sbjct: 29 VSVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQL 87
Query: 95 AYGSAGSPPDVPPE 108
YG+ G+ +PP
Sbjct: 88 GYGAGGAGGVIPPN 101
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 34 LVDVHYEGSLAETGEVFDTTHEDNT--VFSFELGKGSVIRAWDIALRSMKVGEVAKLTCK 91
L+ VHYEG L + G +F +TH+ N F LG ++ WD L+ M VGE KL
Sbjct: 34 LMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIP 93
Query: 92 PEYAYGSAGSPPDVPPE 108
P YG G +PPE
Sbjct: 94 PALGYGKEGK-GKIPPE 109
>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human
Fkbp38
pdb|3EY6|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Human
Fkbp38
Length = 121
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 1 MGDSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVF 60
M + +D+ G+ + KK + P + P + +V VH + SL E G T ++
Sbjct: 1 MREWLDILGNGLLRKKTLVPGPPGSSRPVKG-QVVTVHLQTSL-ENG----TRVQEEPEL 54
Query: 61 SFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPE 108
F LG VI+A D+++ M VGE A +T +Y YG G P +PP
Sbjct: 55 VFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPH 102
>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding
Protein 8
Length = 118
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 5 IDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFEL 64
+D+ G+ + KK + P + P + +V VH + SL E G T ++ F L
Sbjct: 7 LDILGNGLLRKKTLVPGPPGSSRPVKG-QVVTVHLQTSL-ENG----TRVQEEPELVFTL 60
Query: 65 GKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPE 108
G VI+A D+++ M VGE A +T +Y YG G P +PP
Sbjct: 61 GDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPH 104
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 34 LVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRS------MKVGEVAK 87
L+ HY G L E G+VFD+++ +F +G G VI+ WD + M G
Sbjct: 32 LIKAHYVGKL-ENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRT 90
Query: 88 LTCKPEYAYGSAGS 101
L PE AYG G+
Sbjct: 91 LRIPPELAYGDRGA 104
>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Fkbp38 (Fkbp38ntd)
Length = 157
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 5 IDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFEL 64
+D+ G+ + KK + P + P + +V VH + SL E G T ++ F L
Sbjct: 37 LDILGNGLLRKKTLVPGPPGSSRPVKG-QVVTVHLQTSL-ENG----TRVQEEPELVFTL 90
Query: 65 GKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGS-PPDVPP 107
G VI+A D+++ M VGE A +T +Y YG GS P +PP
Sbjct: 91 GDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPP 134
>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human
Cdna
Length = 135
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 5 IDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFEL 64
+D+ G+ + KK + P + P + +V VH + SL E G T ++ F L
Sbjct: 11 LDILGNGLLRKKTLVPGPPGSSRPVKGQ-VVTVHLQTSL-ENG----TRVQEEPELVFTL 64
Query: 65 GKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGS-PPDVPPE 108
G VI+A D+++ M VGE A +T +Y YG GS P +PP
Sbjct: 65 GDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPH 109
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEY 94
+VHY G L + G VFD++ E +F VI+ W AL+ M+ G+ +L +
Sbjct: 59 CEVHYTGRLRD-GTVFDSSRERGKPTTFR--PNEVIKGWTEALQLMREGDRWRLFIPYDL 115
Query: 95 AYGSAGSPPDVPP 107
AYG G +PP
Sbjct: 116 AYGVTGGGGMIPP 128
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 8 TGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKG 67
T G++ ++V K +A +D V V+Y+G+L + G+ FD ++ SF L
Sbjct: 118 TSSTGLVYQVVEAGKGEA---PKDSDTVVVNYKGTLID-GKEFDNSYTRGEPLSFRLD-- 171
Query: 68 SVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPP 107
VI W L+++K G KL PE AYG AG P +PP
Sbjct: 172 GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV-PGIPP 210
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 8 TGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKG 67
T G++ ++V K +A +D V V+Y+G+L + G+ FD ++ SF L
Sbjct: 118 TSSTGLVYQVVEAGKGEA---PKDSDTVVVNYKGTLID-GKEFDNSYTRGEPLSFRLD-- 171
Query: 68 SVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPP 107
VI W L+++K G KL PE AYG AG P +PP
Sbjct: 172 GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV-PGIPP 210
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 10 DEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSV 69
D G+I++I Q + + + + +V+V EG + ++FD FE+G+G
Sbjct: 24 DGGIIRRI--QTRGEGYAKPNEGAIVEVALEGYYKD--KLFDQRE-----LRFEIGEGEN 74
Query: 70 IR---AWDIALRSMKVGEVAKLTCKPEYAYGSAGSPP-DVPP 107
+ + A++ M+ GE + + KP YA+GS G +PP
Sbjct: 75 LDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPP 116
>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
pdb|2F4E|B Chain B, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
Length = 180
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 12/104 (11%)
Query: 10 DEGVIKKIVRQ---AKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGK 66
DE V K+I+++ +KP S +HY + F+ T + LGK
Sbjct: 48 DEKVSKQIIKEGHGSKPSKYS------TCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGK 101
Query: 67 -GSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAG--SPPDVPP 107
+ I + SMK GE A + E AYG G S P+VPP
Sbjct: 102 EKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPP 145
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 12/104 (11%)
Query: 10 DEGVIKKIVRQ---AKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGK 66
DE V K+I+++ +KP S +HY + F+ T + LGK
Sbjct: 48 DEKVSKQIIKEGHGSKPSKYST------CFLHYRAWTKNSQHKFEDTWHEQQPIELVLGK 101
Query: 67 -GSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAG--SPPDVPP 107
+ I + SMK GE A + E AYG G S P+VPP
Sbjct: 102 EKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPP 145
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEY 94
V+V Y G L + G++FD + + F L SVI W AL++M G +L +
Sbjct: 138 VEVRYVGRLPD-GKIFDQSTQPQW---FRLD--SVISGWTSALQNMPTGAKWRLVIPSDQ 191
Query: 95 AYGSAGS 101
AYG+ G+
Sbjct: 192 AYGAEGA 198
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTV-------------FSFELGKGSVIRAWDIALRSMK 81
+ V Y G L E+G+VFDT+ E+ F +G+G +I+ ++ A+ M+
Sbjct: 8 IKVDYIGKL-ESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDME 66
Query: 82 VGEVAKLTCKPEYAYGS 98
VG+ + E AYG+
Sbjct: 67 VGDEKTVKIPAEKAYGN 83
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 32.7 bits (73), Expect = 0.049, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 10 DEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSV 69
D G+I++I Q + + + + +V+V EG + ++FD FE+G+G
Sbjct: 24 DGGIIRRI--QTRGEGYAKPNEGAIVEVALEGYYKD--KLFDQRE-----LRFEIGEGEN 74
Query: 70 IR---AWDIALRSMKVGEVAKLTCKPEYAYGSAGSPP-DVPP 107
+ + A++ + GE + + KP YA+GS G +PP
Sbjct: 75 LDLPYGLERAIQRXEKGEHSIVYLKPSYAFGSVGKEKFQIPP 116
>pdb|3PRB|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRB|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRD|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 231
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 21/81 (25%)
Query: 34 LVDVHYEGSLAETGEVFDTTHED----------------NTVFSFELGKGSVIRAWDIAL 77
+V + Y+G + G++FDTT+E+ +F+ G+G V+ D A+
Sbjct: 7 MVKISYDGYV--DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFA---GEGQVLPGLDEAI 61
Query: 78 RSMKVGEVAKLTCKPEYAYGS 98
M VGE ++ PE A+G
Sbjct: 62 LEMDVGEEREVVLPPEKAFGK 82
>pdb|3PR9|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 157
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 21/81 (25%)
Query: 34 LVDVHYEGSLAETGEVFDTTHED----------------NTVFSFELGKGSVIRAWDIAL 77
+V + Y+G + G++FDTT+E+ +F+ G+G V+ D A+
Sbjct: 7 MVKISYDGYV--DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFA---GEGQVLPGLDEAI 61
Query: 78 RSMKVGEVAKLTCKPEYAYGS 98
M VGE ++ PE A+G
Sbjct: 62 LEMDVGEEREVVLPPEKAFGK 82
>pdb|1KXV|C Chain C, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|D Chain D, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
Length = 121
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 52 TTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSP 102
TT+ D+ F + +G+ + + S+K + A CKP YG G P
Sbjct: 57 TTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDTAMYYCKPSLRYGLPGCP 107
>pdb|2LKN|A Chain A, Solution Structure Of The Ppiase Domain Of Human
Aryl-Hydrocarbon Receptor-Interacting Protein (Aip)
Length = 165
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 2 GDSIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAE-TGEVFDTTHEDNTVF 60
D I ++G+ K+++++ + + L +D HY ++ G V D +
Sbjct: 1 ADIIARLREDGIQKRVIQEGRGE-LPDFQDGTKATFHYRTLHSDDEGTVLDDSRARGKPM 59
Query: 61 SFELGKGSVIRAWDIALRSMKVGEVAKLTC 90
+GK + W+ + +M+ GE+A+ C
Sbjct: 60 ELIIGKKFKLPVWETIVCTMREGEIAQFLC 89
>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The
Chaperone Binding Site Occupied By The Linker Of The
Purification Tag
Length = 169
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 35 VDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEY 94
V VH+ L + G ++T + F LG S+ + L +KVG+ + +P+
Sbjct: 31 VLVHFTLKL-DDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDA 89
Query: 95 AYG 97
A+G
Sbjct: 90 AFG 92
>pdb|1CG2|A Chain A, Carboxypeptidase G2
pdb|1CG2|B Chain B, Carboxypeptidase G2
pdb|1CG2|C Chain C, Carboxypeptidase G2
pdb|1CG2|D Chain D, Carboxypeptidase G2
Length = 393
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 63 ELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPP 107
ELG +++ A D+ LR+M + + AK + + AG+ ++ P
Sbjct: 213 ELGVNALVEASDLVLRTMNIDDKAK-NLRFNWTIAKAGNVSNIIP 256
>pdb|1J8R|A Chain A, Binary Complex Of The Papg Receptor-Binding Domain Bound
To Gbo4 Receptor
pdb|1J8S|A Chain A, Papg Adhesin Receptor Binding Domain-Unbound Form
Length = 196
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 23 PDALSPTEDLPL-VDVHYEGSLAE--TGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRS 79
P + PL ++VH +GS +E TG DN + F G RA+D
Sbjct: 67 PKKVXTQNGYPLFIEVHNKGSWSEENTG--------DNDSYFFLKGYKWDERAFDAGNLC 118
Query: 80 MKVGEVAKLTCKPEYAYGSAGSPPDVP 106
K GE+ +LT K + P D+P
Sbjct: 119 QKPGEITRLTEKFDDIIFKVALPADLP 145
>pdb|1V73|A Chain A, Crystal Structure Of Cold-Active Protein-Tyrosine
Phosphatase Of A Psychrophile Shewanella Sp
Length = 342
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 40 EGSLAETGEVFDTTHEDNTVFSF 62
EG + TG++FD H+ N V F
Sbjct: 106 EGHMVMTGDIFDRGHQVNEVLWF 128
>pdb|2Z72|A Chain A, New Structure Of Cold-Active Protein Tyrosine Phosphatase
At 1.1 Angstrom
Length = 342
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 40 EGSLAETGEVFDTTHEDNTVFSF 62
EG + TG++FD H+ N V F
Sbjct: 106 EGHMVMTGDIFDRGHQVNEVLWF 128
>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|F Chain F, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|C Chain C, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|D Chain D, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 419
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 23 PDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKV 82
P LSP E LV + T E+ D+ + +LG + AW + SM V
Sbjct: 120 PKGLSPQELERLVRRY-------TAELVGLIGPDSDILGPDLGADQQVMAWIMDTYSMTV 172
Query: 83 GEV--AKLTCKPEYAYGSAG 100
G +T KP GS G
Sbjct: 173 GSTVPGVVTGKPHALGGSEG 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,676,232
Number of Sequences: 62578
Number of extensions: 142418
Number of successful extensions: 301
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 81
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)