Query 033929
Match_columns 108
No_of_seqs 219 out of 1025
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 07:54:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 100.0 3.7E-30 8E-35 169.0 10.1 96 7-108 97-192 (205)
2 KOG0544 FKBP-type peptidyl-pro 100.0 3.1E-29 6.6E-34 145.9 9.3 94 12-108 2-95 (108)
3 KOG0549 FKBP-type peptidyl-pro 100.0 1.3E-28 2.9E-33 158.9 10.8 98 9-108 66-163 (188)
4 PRK11570 peptidyl-prolyl cis-t 99.9 2.6E-26 5.6E-31 153.5 11.9 96 7-108 98-193 (206)
5 TIGR03516 ppisom_GldI peptidyl 99.9 1E-25 2.2E-30 147.6 12.4 99 7-108 65-163 (177)
6 PRK10902 FKBP-type peptidyl-pr 99.9 4.4E-23 9.5E-28 142.5 12.0 94 8-108 143-236 (269)
7 KOG0552 FKBP-type peptidyl-pro 99.9 2.6E-23 5.5E-28 139.4 10.0 97 7-108 116-213 (226)
8 PF00254 FKBP_C: FKBP-type pep 99.9 5.9E-22 1.3E-26 117.6 10.0 78 30-108 6-84 (94)
9 PRK15095 FKBP-type peptidyl-pr 99.8 2.2E-19 4.7E-24 115.7 8.8 70 30-100 6-75 (156)
10 KOG0543 FKBP-type peptidyl-pro 99.8 1.3E-17 2.9E-22 119.1 11.7 93 10-108 83-177 (397)
11 COG1047 SlpA FKBP-type peptidy 99.7 1.7E-17 3.7E-22 107.5 8.9 70 30-100 4-73 (174)
12 PRK10737 FKBP-type peptidyl-pr 99.7 1.3E-16 2.9E-21 105.7 8.9 68 31-100 5-72 (196)
13 KOG0543 FKBP-type peptidyl-pro 99.2 7.7E-11 1.7E-15 84.8 5.8 72 19-108 1-72 (397)
14 TIGR00115 tig trigger factor. 99.1 5E-10 1.1E-14 81.7 8.7 70 28-101 146-215 (408)
15 PRK01490 tig trigger factor; P 99.1 1.3E-09 2.7E-14 80.3 8.7 69 28-100 157-225 (435)
16 COG0544 Tig FKBP-type peptidyl 98.9 6.4E-09 1.4E-13 76.7 7.1 67 29-99 158-224 (441)
17 KOG0545 Aryl-hydrocarbon recep 98.6 1.2E-08 2.5E-13 70.1 1.5 85 7-92 6-91 (329)
18 KOG0549 FKBP-type peptidyl-pro 98.1 8.8E-07 1.9E-11 58.0 0.9 40 62-101 1-40 (188)
19 PHA02122 hypothetical protein 75.5 6.4 0.00014 21.0 3.2 20 31-52 40-59 (65)
20 COG0024 Map Methionine aminope 74.1 25 0.00054 24.7 6.8 52 27-86 85-146 (255)
21 PF09122 DUF1930: Domain of un 71.6 9 0.00019 21.0 3.3 23 71-93 35-57 (68)
22 PF01272 GreA_GreB: Transcript 71.3 5.9 0.00013 22.2 2.7 25 69-93 42-66 (77)
23 cd01090 Creatinase Creatine am 62.7 45 0.00098 22.5 6.7 53 27-87 75-136 (228)
24 KOG2738 Putative methionine am 59.9 42 0.00091 24.4 5.7 63 16-87 185-256 (369)
25 PRK08671 methionine aminopepti 59.0 47 0.001 23.4 5.9 50 28-85 71-126 (291)
26 TIGR00501 met_pdase_II methion 58.3 51 0.0011 23.4 6.0 51 28-86 74-130 (295)
27 cd01088 MetAP2 Methionine Amin 57.6 52 0.0011 23.2 6.0 51 28-86 70-126 (291)
28 TIGR00495 crvDNA_42K 42K curve 57.6 71 0.0015 23.7 6.8 53 27-87 99-165 (389)
29 PRK12897 methionine aminopepti 56.8 60 0.0013 22.1 6.8 53 27-87 83-144 (248)
30 PTZ00053 methionine aminopepti 54.7 37 0.00079 26.0 5.0 51 28-86 233-289 (470)
31 PLN03158 methionine aminopepti 54.3 85 0.0018 23.5 6.8 51 27-85 216-275 (396)
32 PRK00809 hypothetical protein; 49.1 30 0.00066 22.0 3.3 25 69-93 24-48 (144)
33 PRK00226 greA transcription el 46.2 27 0.00059 22.3 2.8 25 69-93 122-146 (157)
34 TIGR01462 greA transcription e 45.7 31 0.00067 21.9 3.0 25 69-93 117-141 (151)
35 PRK05753 nucleoside diphosphat 45.6 25 0.00055 22.1 2.6 25 69-93 91-115 (137)
36 COG0425 SirA Predicted redox p 45.2 35 0.00077 19.2 2.9 24 72-95 21-44 (78)
37 PRK12318 methionine aminopepti 43.9 1.1E+02 0.0025 21.6 6.6 51 27-85 124-183 (291)
38 PF00639 Rotamase: PPIC-type P 43.3 26 0.00057 20.1 2.3 25 65-89 58-82 (95)
39 cd01089 PA2G4-like Related to 42.0 1.1E+02 0.0023 20.6 6.9 52 27-86 81-146 (228)
40 TIGR01461 greB transcription e 41.6 37 0.00081 21.8 2.9 24 70-93 120-143 (156)
41 TIGR02925 cis_trans_EpsD pepti 39.9 31 0.00066 23.2 2.5 29 66-96 189-217 (232)
42 PRK12896 methionine aminopepti 39.3 1.2E+02 0.0026 20.5 6.6 51 27-85 89-148 (255)
43 cd01086 MetAP1 Methionine Amin 38.1 1.2E+02 0.0027 20.2 6.7 51 27-85 74-133 (238)
44 PRK05892 nucleoside diphosphat 36.9 46 0.001 21.5 2.8 24 70-93 122-145 (158)
45 cd03422 YedF YedF is a bacteri 36.5 56 0.0012 17.7 2.8 22 72-93 15-36 (69)
46 TIGR00500 met_pdase_I methioni 36.3 1.4E+02 0.0029 20.2 6.7 51 27-85 82-141 (247)
47 cd03420 SirA_RHOD_Pry_redox Si 36.1 61 0.0013 17.5 2.9 21 73-93 16-36 (69)
48 TIGR02993 ectoine_eutD ectoine 35.8 1.5E+02 0.0033 21.8 5.7 53 27-87 236-297 (391)
49 PRK01885 greB transcription el 34.3 54 0.0012 21.1 2.8 24 70-93 122-145 (157)
50 PRK12426 elongation factor P; 32.5 1.5E+02 0.0033 19.7 5.0 61 28-90 30-115 (185)
51 COG0782 Uncharacterized conser 32.2 1.2E+02 0.0027 19.3 4.2 23 69-91 115-137 (151)
52 PRK05716 methionine aminopepti 32.2 1.6E+02 0.0035 19.8 6.2 52 27-86 84-144 (252)
53 PF01206 TusA: Sulfurtransfera 31.2 75 0.0016 16.9 2.8 24 72-95 16-39 (70)
54 PF04014 Antitoxin-MazE: Antid 30.8 76 0.0017 15.7 4.0 24 69-93 11-34 (47)
55 TIGR03595 Obg_CgtA_exten Obg f 29.9 58 0.0013 17.9 2.1 18 71-88 43-62 (69)
56 PF07076 DUF1344: Protein of u 29.3 74 0.0016 17.3 2.4 15 77-91 35-49 (61)
57 PRK12450 foldase protein PrsA; 29.0 43 0.00094 23.9 1.9 29 61-89 194-222 (309)
58 COG2139 RPL21A Ribosomal prote 28.9 80 0.0017 18.8 2.6 25 73-97 26-50 (98)
59 PF04225 OapA: Opacity-associa 27.9 61 0.0013 18.5 2.1 19 75-93 38-56 (85)
60 PF11604 CusF_Ec: Copper bindi 27.8 52 0.0011 18.0 1.7 28 58-92 28-55 (70)
61 PRK11018 hypothetical protein; 27.2 97 0.0021 17.3 2.8 22 72-93 24-45 (78)
62 PRK07281 methionine aminopepti 27.2 2.3E+02 0.005 20.1 5.5 29 58-86 137-174 (286)
63 cd03423 SirA SirA (also known 26.5 1.2E+02 0.0025 16.3 3.0 21 73-93 16-36 (69)
64 PRK00299 sulfur transfer prote 26.4 1.1E+02 0.0024 17.2 2.9 22 72-93 25-46 (81)
65 PRK04405 prsA peptidylprolyl i 25.7 47 0.001 23.6 1.6 25 62-86 194-218 (298)
66 PF01878 EVE: EVE domain; Int 25.7 62 0.0013 20.1 2.0 17 76-92 36-52 (143)
67 PRK02268 hypothetical protein; 25.6 81 0.0018 20.1 2.5 25 70-94 26-50 (141)
68 COG2258 Uncharacterized protei 25.1 56 0.0012 22.3 1.8 28 9-42 137-164 (210)
69 PRK11536 6-N-hydroxylaminopuri 23.8 84 0.0018 21.6 2.5 27 8-40 139-165 (223)
70 PF09269 DUF1967: Domain of un 23.7 81 0.0017 17.3 2.0 18 71-88 43-62 (69)
71 KOG1452 Predicted Rho GTPase-a 23.3 2.4E+02 0.0052 20.9 4.7 40 4-43 43-82 (442)
72 cd00291 SirA_YedF_YeeD SirA, Y 23.2 1.3E+02 0.0028 15.8 3.0 21 73-93 16-36 (69)
73 PRK15173 peptidase; Provisiona 22.6 3E+02 0.0065 19.7 5.8 51 28-86 169-228 (323)
74 COG0006 PepP Xaa-Pro aminopept 22.4 3.2E+02 0.0068 19.9 5.8 50 28-85 229-287 (384)
75 TIGR02178 yeiP elongation fact 22.3 2.5E+02 0.0054 18.7 5.7 42 12-56 15-56 (186)
76 KOG3553 Tax interaction protei 21.9 1.1E+02 0.0024 18.6 2.4 16 9-24 57-72 (124)
77 cd00520 RRF Ribosome recycling 21.7 1.7E+02 0.0037 19.2 3.6 35 58-92 59-100 (179)
78 PF00819 Myotoxins: Myotoxin; 21.6 52 0.0011 16.0 0.8 15 87-101 16-30 (43)
79 PRK15441 peptidyl-prolyl cis-t 21.6 79 0.0017 18.1 1.8 22 66-87 55-76 (93)
80 cd01087 Prolidase Prolidase. E 21.0 2.7E+02 0.0059 18.7 5.6 51 27-85 68-128 (243)
81 PF03459 TOBE: TOBE domain; I 20.7 96 0.0021 16.0 1.9 22 72-93 39-60 (64)
82 TIGR00496 frr ribosome recycli 20.0 2.2E+02 0.0048 18.7 3.8 60 33-92 29-95 (176)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.7e-30 Score=169.02 Aligned_cols=96 Identities=40% Similarity=0.665 Sum_probs=89.1
Q ss_pred ccCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCchhHHHHHHhcCCCCCcEE
Q 033929 7 LTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVA 86 (108)
Q Consensus 7 ~~~~~gi~~~il~~G~g~~~~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~ 86 (108)
.++.||++|++++.|.|. .|.. +|.|++||++++. ||++|||++++++|+.|.++ ++|+||.++|.+|++|+++
T Consensus 97 ~~~~sgl~y~~~~~G~G~--~~~~-~~~V~vhY~G~l~-~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~ 170 (205)
T COG0545 97 KTLPSGLQYKVLKAGDGA--APKK-GDTVTVHYTGTLI-DGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKR 170 (205)
T ss_pred eECCCCcEEEEEeccCCC--CCCC-CCEEEEEEEEecC-CCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceE
Confidence 457899999999999996 3555 5999999999997 99999999999999999998 8999999999999999999
Q ss_pred EEEEcCCcccCCCCCCCCCCCC
Q 033929 87 KLTCKPEYAYGSAGSPPDVPPE 108 (108)
Q Consensus 87 ~~~ip~~~ayg~~g~~~~ipp~ 108 (108)
+++|||++|||+.|.+..||||
T Consensus 171 ~l~IP~~laYG~~g~~g~Ippn 192 (205)
T COG0545 171 KLTIPPELAYGERGVPGVIPPN 192 (205)
T ss_pred EEEeCchhccCcCCCCCCCCCC
Confidence 9999999999999987779998
No 2
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-29 Score=145.91 Aligned_cols=94 Identities=41% Similarity=0.815 Sum_probs=88.1
Q ss_pred CEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCchhHHHHHHhcCCCCCcEEEEEEc
Q 033929 12 GVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCK 91 (108)
Q Consensus 12 gi~~~il~~G~g~~~~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~~~ip 91 (108)
|+.+++|++|+|.. .|.. ||.|++||++.+. ||+.|||+.+++.|+.|.+|.+++|.||++++..|.+||+++++|+
T Consensus 2 Gv~~~~i~~Gdg~t-fpK~-Gqtvt~hYtg~L~-dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~ 78 (108)
T KOG0544|consen 2 GVEKQVISPGDGRT-FPKK-GQTVTVHYTGTLQ-DGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTIS 78 (108)
T ss_pred CceeEEeeCCCCcc-cCCC-CCEEEEEEEeEec-CCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeec
Confidence 68899999999853 5654 6999999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCCCC
Q 033929 92 PEYAYGSAGSPPDVPPE 108 (108)
Q Consensus 92 ~~~ayg~~g~~~~ipp~ 108 (108)
|++|||..|.+..||||
T Consensus 79 pd~aYG~~G~p~~IppN 95 (108)
T KOG0544|consen 79 PDYAYGPRGHPGGIPPN 95 (108)
T ss_pred cccccCCCCCCCccCCC
Confidence 99999999988899998
No 3
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-28 Score=158.87 Aligned_cols=98 Identities=35% Similarity=0.658 Sum_probs=89.1
Q ss_pred CCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCchhHHHHHHhcCCCCCcEEEE
Q 033929 9 GDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKL 88 (108)
Q Consensus 9 ~~~gi~~~il~~G~g~~~~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~~ 88 (108)
+.+.++..++++-.. +...++.||++.+||++.+. ||++|||||.+++|++|+||.+++|+||+++|.+|++||++.+
T Consensus 66 ~~~~l~I~v~~~p~~-C~~kak~GD~l~~HY~g~le-DGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl 143 (188)
T KOG0549|consen 66 PDEELQIGVLKKPEE-CPEKAKKGDTLHVHYTGSLE-DGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKL 143 (188)
T ss_pred CCCceeEEEEECCcc-ccccccCCCEEEEEEEEEec-CCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEE
Confidence 457889999988443 54566778999999999886 9999999999999999999999999999999999999999999
Q ss_pred EEcCCcccCCCCCCCCCCCC
Q 033929 89 TCKPEYAYGSAGSPPDVPPE 108 (108)
Q Consensus 89 ~ip~~~ayg~~g~~~~ipp~ 108 (108)
.|||+++||++|.++.||++
T Consensus 144 ~IPp~LgYG~~G~~~~IP~~ 163 (188)
T KOG0549|consen 144 IIPPHLGYGERGAPPKIPGD 163 (188)
T ss_pred ecCccccCccCCCCCCCCCC
Confidence 99999999999998889986
No 4
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.94 E-value=2.6e-26 Score=153.51 Aligned_cols=96 Identities=32% Similarity=0.513 Sum_probs=88.2
Q ss_pred ccCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCchhHHHHHHhcCCCCCcEE
Q 033929 7 LTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVA 86 (108)
Q Consensus 7 ~~~~~gi~~~il~~G~g~~~~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~ 86 (108)
.++++|++|+++++|+|. .|.. +|.|.+||++++. ||++|++++.++.|+.|.++ ++++||+++|.+|++|+++
T Consensus 98 ~~t~sGl~y~vi~~G~G~--~p~~-~d~V~v~Y~g~l~-dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~ 171 (206)
T PRK11570 98 NSTESGLQFRVLTQGEGA--IPAR-TDRVRVHYTGKLI-DGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKW 171 (206)
T ss_pred EECCCCcEEEEEeCCCCC--CCCC-CCEEEEEEEEEEC-CCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEE
Confidence 347899999999999996 4654 5999999999997 99999999988899999996 6999999999999999999
Q ss_pred EEEEcCCcccCCCCCCCCCCCC
Q 033929 87 KLTCKPEYAYGSAGSPPDVPPE 108 (108)
Q Consensus 87 ~~~ip~~~ayg~~g~~~~ipp~ 108 (108)
.|+|||++|||+.|.++.||||
T Consensus 172 ~~~IP~~lAYG~~g~~~~Ipp~ 193 (206)
T PRK11570 172 ELTIPHELAYGERGAGASIPPF 193 (206)
T ss_pred EEEECHHHcCCCCCCCCCcCCC
Confidence 9999999999999988789997
No 5
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.94 E-value=1e-25 Score=147.58 Aligned_cols=99 Identities=20% Similarity=0.273 Sum_probs=88.9
Q ss_pred ccCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCchhHHHHHHhcCCCCCcEE
Q 033929 7 LTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVA 86 (108)
Q Consensus 7 ~~~~~gi~~~il~~G~g~~~~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~ 86 (108)
..+++|++|.+++.+.|+...|.. ||.|++||++++. ||++|++++.. .|+.|.+|.+++++||+++|.+|++||++
T Consensus 65 ~~t~sGl~Y~v~~~~~g~g~~p~~-gd~V~v~Y~~~~~-dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~ 141 (177)
T TIGR03516 65 ETSQNGFWYYYNQKDTGEGTTPEF-GDLVTFEYDIRAL-DGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGETA 141 (177)
T ss_pred eECCCccEEEEEEecCCCCCcCCC-CCEEEEEEEEEeC-CCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCEE
Confidence 457899999999886665455665 5999999999997 99999999864 59999999999999999999999999999
Q ss_pred EEEEcCCcccCCCCCCCCCCCC
Q 033929 87 KLTCKPEYAYGSAGSPPDVPPE 108 (108)
Q Consensus 87 ~~~ip~~~ayg~~g~~~~ipp~ 108 (108)
+|+|||++|||..|.++.||||
T Consensus 142 ~~~iP~~~AYG~~g~~~~Ippn 163 (177)
T TIGR03516 142 TFLFPSHKAYGYYGDQNKIGPN 163 (177)
T ss_pred EEEECHHHcCCCCCCCCCcCcC
Confidence 9999999999999987789997
No 6
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.90 E-value=4.4e-23 Score=142.54 Aligned_cols=94 Identities=34% Similarity=0.642 Sum_probs=85.5
Q ss_pred cCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCchhHHHHHHhcCCCCCcEEE
Q 033929 8 TGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAK 87 (108)
Q Consensus 8 ~~~~gi~~~il~~G~g~~~~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~ 87 (108)
++++|++|+|+++|+|. .|.. ||.|.|||++++. ||++|++++.++.|+.|.++ ++++||+++|.+|++|+++.
T Consensus 143 ~t~sGl~y~Vi~~G~G~--~p~~-gD~V~V~Y~g~l~-dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~ 216 (269)
T PRK10902 143 TTSTGLLYKVEKEGTGE--APKD-SDTVVVNYKGTLI-DGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIK 216 (269)
T ss_pred ECCCccEEEEEeCCCCC--CCCC-CCEEEEEEEEEeC-CCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEE
Confidence 47899999999999996 4654 5999999999987 99999999988889999986 69999999999999999999
Q ss_pred EEEcCCcccCCCCCCCCCCCC
Q 033929 88 LTCKPEYAYGSAGSPPDVPPE 108 (108)
Q Consensus 88 ~~ip~~~ayg~~g~~~~ipp~ 108 (108)
|+||++++||..+.+ .||||
T Consensus 217 l~IP~~laYG~~g~~-gIppn 236 (269)
T PRK10902 217 LVIPPELAYGKAGVP-GIPAN 236 (269)
T ss_pred EEECchhhCCCCCCC-CCCCC
Confidence 999999999999875 58886
No 7
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.6e-23 Score=139.39 Aligned_cols=97 Identities=35% Similarity=0.640 Sum_probs=88.5
Q ss_pred ccCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEE-EEcCCCchhHHHHHHhcCCCCCcE
Q 033929 7 LTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFS-FELGKGSVIRAWDIALRSMKVGEV 85 (108)
Q Consensus 7 ~~~~~gi~~~il~~G~g~~~~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~-~~~g~~~~~~g~~~al~~m~~Ge~ 85 (108)
.+..+||+|+.++.|+|. .|.. |++|.+||.+++..+|++|++++.. .|+. |.+|.+.+|+||+.++.+|++|.+
T Consensus 116 ~tl~~Gl~y~D~~vG~G~--~a~~-G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGk 191 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGP--SAKK-GKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGK 191 (226)
T ss_pred eecCCCcEEEEEEecCCC--CCCC-CCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCe
Confidence 567899999999999995 3544 6999999999997799999999864 7888 999999999999999999999999
Q ss_pred EEEEEcCCcccCCCCCCCCCCCC
Q 033929 86 AKLTCKPEYAYGSAGSPPDVPPE 108 (108)
Q Consensus 86 ~~~~ip~~~ayg~~g~~~~ipp~ 108 (108)
++|+|||++|||..+.+ .||||
T Consensus 192 RrviIPp~lgYg~~g~~-~Ippn 213 (226)
T KOG0552|consen 192 RRVIIPPELGYGKKGVP-EIPPN 213 (226)
T ss_pred eEEEeCccccccccCcC-cCCCC
Confidence 99999999999999987 69997
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.88 E-value=5.9e-22 Score=117.60 Aligned_cols=78 Identities=42% Similarity=0.787 Sum_probs=72.1
Q ss_pred CCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCchhHHHHHHhcCCCCCcEEEEEEcCCcccCCCCC-CCCCCCC
Q 033929 30 EDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGS-PPDVPPE 108 (108)
Q Consensus 30 ~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~~~ip~~~ayg~~g~-~~~ipp~ 108 (108)
+.||.|++||++++. +|+.|++++....|+.|.+|.+++++||+++|.+|++||+++|.||++++||+.+. ...||||
T Consensus 6 ~~gd~V~i~y~~~~~-~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ip~~ 84 (94)
T PF00254_consen 6 KEGDTVTIHYTGRLE-DGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPKIPPN 84 (94)
T ss_dssp STTSEEEEEEEEEET-TSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTTBTTT
T ss_pred CCCCEEEEEEEEEEC-CCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCCcCCC
Confidence 346999999999997 99999999888899999999999999999999999999999999999999999987 3368886
No 9
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.81 E-value=2.2e-19 Score=115.66 Aligned_cols=70 Identities=27% Similarity=0.448 Sum_probs=65.8
Q ss_pred CCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCchhHHHHHHhcCCCCCcEEEEEEcCCcccCCCC
Q 033929 30 EDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAG 100 (108)
Q Consensus 30 ~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~~~ip~~~ayg~~g 100 (108)
..|+.|++||++++. ||++|++|+.+++|+.|.+|.+++++||+++|.+|++|+++.|.|||++|||++.
T Consensus 6 ~~~~~V~v~Y~~~~~-dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 6 QSNSAVLVHFTLKLD-DGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred CCCCEEEEEEEEEeC-CCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 446999999999996 9999999998779999999999999999999999999999999999999999875
No 10
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.3e-17 Score=119.11 Aligned_cols=93 Identities=48% Similarity=0.836 Sum_probs=81.0
Q ss_pred CCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCC-CchhHHHHHHhcCCCCCcEEEE
Q 033929 10 DEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGK-GSVIRAWDIALRSMKVGEVAKL 88 (108)
Q Consensus 10 ~~gi~~~il~~G~g~~~~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~-~~~~~g~~~al~~m~~Ge~~~~ 88 (108)
|++|.++|+++|.|+..+|.++ .+|.+||.+++. ++ +|++.. ..|.|.+|+ ..++.||+.||..|++||.+.|
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g-~~V~v~~~G~~~-~~-~f~~~~---~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v 156 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKG-AVVKVHLEGELE-DG-VFDQRE---LRFEFGEGEDIDVIEGLEIALRMMKVGEVALV 156 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCC-cEEEEEEEEEEC-Cc-ceeccc---cceEEecCCccchhHHHHHHHHhcCccceEEE
Confidence 8999999999999976688875 999999999994 44 787643 457888887 5799999999999999999999
Q ss_pred EEcCCcccC-CCCCCCCCCCC
Q 033929 89 TCKPEYAYG-SAGSPPDVPPE 108 (108)
Q Consensus 89 ~ip~~~ayg-~~g~~~~ipp~ 108 (108)
+|+|.+||| ..++++.||||
T Consensus 157 ~i~~~YayG~~~~~~p~IPPn 177 (397)
T KOG0543|consen 157 TIDPKYAYGEEGGEPPLIPPN 177 (397)
T ss_pred EeCcccccCCCCCCCCCCCCC
Confidence 999999999 55677799997
No 11
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.7e-17 Score=107.48 Aligned_cols=70 Identities=34% Similarity=0.500 Sum_probs=65.6
Q ss_pred CCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCchhHHHHHHhcCCCCCcEEEEEEcCCcccCCCC
Q 033929 30 EDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAG 100 (108)
Q Consensus 30 ~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~~~ip~~~ayg~~g 100 (108)
..||.|++||++++. ||++|++|.....|+.|.+|.+++++||++||.+|.+|++..+.|||+.|||.+.
T Consensus 4 ~k~~~V~i~Y~~~~~-dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 4 EKGDVVSLHYTLKVE-DGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred cCCCEEEEEEEEEec-CCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence 346999999999996 7999999987678999999999999999999999999999999999999999975
No 12
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.70 E-value=1.3e-16 Score=105.68 Aligned_cols=68 Identities=22% Similarity=0.356 Sum_probs=63.8
Q ss_pred CCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCchhHHHHHHhcCCCCCcEEEEEEcCCcccCCCC
Q 033929 31 DLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAG 100 (108)
Q Consensus 31 ~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~~~ip~~~ayg~~g 100 (108)
.+++|+++|++++. +|++|++|+. ..|+.|.+|.++++|+|++||.+|++|++..|.|||+.|||++.
T Consensus 5 ~~~vV~l~Y~l~~~-dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d 72 (196)
T PRK10737 5 KDLVVSLAYQVRTE-DGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (196)
T ss_pred CCCEEEEEEEEEeC-CCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 35899999999996 8999999976 48999999999999999999999999999999999999999975
No 13
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=7.7e-11 Score=84.77 Aligned_cols=72 Identities=42% Similarity=0.863 Sum_probs=62.5
Q ss_pred EcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCchhHHHHHHhcCCCCCcEEEEEEcCCcccCC
Q 033929 19 RQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGS 98 (108)
Q Consensus 19 ~~G~g~~~~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~~~ip~~~ayg~ 98 (108)
++|+|.. .|.. ||.|.+||++++. ||+.||||.+ +.|+.|.+|.++++.+|..++..|+. |+
T Consensus 1 ~eg~g~~-~p~~-g~~v~~hytg~l~-dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~ 62 (397)
T KOG0543|consen 1 KEGTGTE-TPMT-GDKVEVHYTGTLL-DGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK--------------GE 62 (397)
T ss_pred CCCCCcc-CCCC-CceeEEEEeEEec-CCeecccccC-CCceeeecCCCccccccccccccccc--------------cc
Confidence 3677754 5666 5999999999997 9999999998 78999999999999999999999998 66
Q ss_pred CCCCCCCCCC
Q 033929 99 AGSPPDVPPE 108 (108)
Q Consensus 99 ~g~~~~ipp~ 108 (108)
.+.+|.||++
T Consensus 63 ~~~pp~ip~~ 72 (397)
T KOG0543|consen 63 AGSPPKIPSN 72 (397)
T ss_pred cCCCCCCCCC
Confidence 7777777775
No 14
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.11 E-value=5e-10 Score=81.75 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=61.7
Q ss_pred CCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCchhHHHHHHhcCCCCCcEEEEEEcCCcccCCCCC
Q 033929 28 PTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGS 101 (108)
Q Consensus 28 p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~~~ip~~~ayg~~g~ 101 (108)
|+..||.|+++|+++. +|+.|+++.. .++.|.+|.+.++++|+++|.||++|+++.|.+++...|+....
T Consensus 146 ~~~~gD~V~v~~~~~~--dg~~~~~~~~--~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~ 215 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI--DGEAFEGGKA--ENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL 215 (408)
T ss_pred ccCCCCEEEEEEEEEE--CCEECcCCCC--CCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC
Confidence 5566899999999987 8999988643 68999999999999999999999999999999998888887654
No 15
>PRK01490 tig trigger factor; Provisional
Probab=99.05 E-value=1.3e-09 Score=80.29 Aligned_cols=69 Identities=30% Similarity=0.494 Sum_probs=60.6
Q ss_pred CCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCchhHHHHHHhcCCCCCcEEEEEEcCCcccCCCC
Q 033929 28 PTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAG 100 (108)
Q Consensus 28 p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~~~ip~~~ayg~~g 100 (108)
|+..||.|+++|+++. +|+.|+++.. .++.|.+|.+++++||+++|.||++|+++.|.+++...|+...
T Consensus 157 ~~~~gD~V~vd~~~~~--~g~~~~~~~~--~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~ 225 (435)
T PRK01490 157 PAENGDRVTIDFVGSI--DGEEFEGGKA--EDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAED 225 (435)
T ss_pred cCCCCCEEEEEEEEEE--CCEECcCCCC--CceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcccccccc
Confidence 5566899999999998 8999887643 6899999999999999999999999999999999888886644
No 16
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6.4e-09 Score=76.71 Aligned_cols=67 Identities=31% Similarity=0.493 Sum_probs=57.3
Q ss_pred CCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCchhHHHHHHhcCCCCCcEEEEEEcCCcccCCC
Q 033929 29 TEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSA 99 (108)
Q Consensus 29 ~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~~~ip~~~ayg~~ 99 (108)
++.||+|+|+|.++. ||..|..... +.+.+.+|.+++||||+++|.||+.|++..|.+.....|...
T Consensus 158 a~~gD~v~IDf~g~i--Dg~~fegg~a--e~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~ 224 (441)
T COG0544 158 AENGDRVTIDFEGSV--DGEEFEGGKA--ENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAE 224 (441)
T ss_pred cccCCEEEEEEEEEE--cCeeccCccc--cCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchh
Confidence 455799999999987 8999988543 679999999999999999999999999999877766666543
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.2e-08 Score=70.12 Aligned_cols=85 Identities=26% Similarity=0.390 Sum_probs=72.2
Q ss_pred ccCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcC-CCcEEeccCCCCeeEEEEcCCCchhHHHHHHhcCCCCCcE
Q 033929 7 LTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAE-TGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEV 85 (108)
Q Consensus 7 ~~~~~gi~~~il~~G~g~~~~p~~~gd~V~v~y~~~~~~-~g~~~~st~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~ 85 (108)
.+.-.||+++||..|+|.- ..-..|..|.+||...... .++++|+|+..++|+.+.+|...-++-||..|..|+++|.
T Consensus 6 ~l~~~gv~Kril~~G~g~l-~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Ev 84 (329)
T KOG0545|consen 6 LLNVEGVKKRILHGGTGEL-PEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEV 84 (329)
T ss_pred hccchhhhHhhccCCCccC-ccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhH
Confidence 3455689999999999964 3344579999999988753 3569999999999999999998889999999999999999
Q ss_pred EEEEEcC
Q 033929 86 AKLTCKP 92 (108)
Q Consensus 86 ~~~~ip~ 92 (108)
+.|++.-
T Consensus 85 aqF~~d~ 91 (329)
T KOG0545|consen 85 AQFWCDT 91 (329)
T ss_pred HHhhhhh
Confidence 9988864
No 18
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=8.8e-07 Score=57.97 Aligned_cols=40 Identities=40% Similarity=0.639 Sum_probs=36.1
Q ss_pred EEcCCCchhHHHHHHhcCCCCCcEEEEEEcCCcccCCCCC
Q 033929 62 FELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGS 101 (108)
Q Consensus 62 ~~~g~~~~~~g~~~al~~m~~Ge~~~~~ip~~~ayg~~g~ 101 (108)
|.+|.+.++++++++|.+|+.|+++++++||+++||..+.
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~ 40 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR 40 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCccccccccc
Confidence 3578889999999999999999999999999999996554
No 19
>PHA02122 hypothetical protein
Probab=75.54 E-value=6.4 Score=21.04 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=16.5
Q ss_pred CCCEEEEEEEEEEcCCCcEEec
Q 033929 31 DLPLVDVHYEGSLAETGEVFDT 52 (108)
Q Consensus 31 ~gd~V~v~y~~~~~~~g~~~~s 52 (108)
.||.|.++|.... +|+.|-.
T Consensus 40 ~gd~v~vn~e~~~--ng~l~i~ 59 (65)
T PHA02122 40 DGDEVIVNFELVV--NGKLIIN 59 (65)
T ss_pred CCCEEEEEEEEEE--CCEEEEe
Confidence 3699999999988 8887753
No 20
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=74.06 E-value=25 Score=24.68 Aligned_cols=52 Identities=19% Similarity=0.301 Sum_probs=38.3
Q ss_pred CCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCc------hh----HHHHHHhcCCCCCcEE
Q 033929 27 SPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS------VI----RAWDIALRSMKVGEVA 86 (108)
Q Consensus 27 ~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~------~~----~g~~~al~~m~~Ge~~ 86 (108)
+..+.||.|.|+..... ||-.-|+ .++|.+|... |+ .+|+.++..+++|-+.
T Consensus 85 ~vlk~GDiv~IDvg~~~--dG~~~Ds------a~T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~~l 146 (255)
T COG0024 85 KVLKEGDIVKIDVGAHI--DGYIGDT------AITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGARL 146 (255)
T ss_pred cccCCCCEEEEEEEEEE--CCeeeeE------EEEEECCCCChHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 56677899999999887 8877774 5677888421 33 4677888888888664
No 21
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=71.56 E-value=9 Score=20.99 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=17.6
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCC
Q 033929 71 RAWDIALRSMKVGEVAKLTCKPE 93 (108)
Q Consensus 71 ~g~~~al~~m~~Ge~~~~~ip~~ 93 (108)
+.+..|+..|+.||++.++..+.
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETTS
T ss_pred HHHHHHHHHhhcCceeEEEEecC
Confidence 57889999999999999887653
No 22
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=71.28 E-value=5.9 Score=22.15 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=19.4
Q ss_pred hhHHHHHHhcCCCCCcEEEEEEcCC
Q 033929 69 VIRAWDIALRSMKVGEVAKLTCKPE 93 (108)
Q Consensus 69 ~~~g~~~al~~m~~Ge~~~~~ip~~ 93 (108)
...-|-.||.+.++|+.+.+.+|..
T Consensus 42 ~~SPLG~ALlG~~~Gd~v~~~~~~g 66 (77)
T PF01272_consen 42 IDSPLGKALLGKKVGDEVEVELPGG 66 (77)
T ss_dssp TTSHHHHHHTT-BTT-EEEEEETTB
T ss_pred ecCHHHHHhcCCCCCCEEEEEeCCc
Confidence 3456889999999999999999864
No 23
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=62.68 E-value=45 Score=22.54 Aligned_cols=53 Identities=13% Similarity=0.079 Sum_probs=35.3
Q ss_pred CCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCc---------hhHHHHHHhcCCCCCcEEE
Q 033929 27 SPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS---------VIRAWDIALRSMKVGEVAK 87 (108)
Q Consensus 27 ~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~---------~~~g~~~al~~m~~Ge~~~ 87 (108)
++.+.||.|.+++-..+ +|-..| ...+|.+|.-. +..+++.++..+++|-++.
T Consensus 75 r~l~~GD~v~~d~g~~~--~GY~ad------~~RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~rpG~~~~ 136 (228)
T cd01090 75 RKVQRGDILSLNCFPMI--AGYYTA------LERTLFLDEVSDAHLKIWEANVAVHERGLELIKPGARCK 136 (228)
T ss_pred cccCCCCEEEEEEeEEE--CCEeee------eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence 45566899999988766 665443 34556676322 4567777888888886643
No 24
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=59.93 E-value=42 Score=24.44 Aligned_cols=63 Identities=22% Similarity=0.270 Sum_probs=43.1
Q ss_pred EEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCc---------hhHHHHHHhcCCCCCcEE
Q 033929 16 KIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS---------VIRAWDIALRSMKVGEVA 86 (108)
Q Consensus 16 ~il~~G~g~~~~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~---------~~~g~~~al~~m~~Ge~~ 86 (108)
+++--|-.+. +|.+.||.|-|+.+.|+ +|--=| -.-+|.+|+-+ ....|+.|+.-.|+|.+.
T Consensus 185 EviCHGIPD~-RpLedGDIvNiDVtvY~--~GyHGD------lneTffvG~Vde~~k~LVkvT~EcL~kaI~~~kpGv~f 255 (369)
T KOG2738|consen 185 EVICHGIPDS-RPLEDGDIVNIDVTVYL--NGYHGD------LNETFFVGNVDEKAKKLVKVTRECLEKAIAIVKPGVSF 255 (369)
T ss_pred heeecCCCCc-CcCCCCCEEeEEEEEEe--ccccCc------cccceEeeccCHHHHHHHHHHHHHHHHHHHHhCCchhH
Confidence 4566677665 78888999999999998 554222 23345566421 236788999999998765
Q ss_pred E
Q 033929 87 K 87 (108)
Q Consensus 87 ~ 87 (108)
+
T Consensus 256 r 256 (369)
T KOG2738|consen 256 R 256 (369)
T ss_pred H
Confidence 4
No 25
>PRK08671 methionine aminopeptidase; Provisional
Probab=59.01 E-value=47 Score=23.42 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=34.5
Q ss_pred CCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCc------hhHHHHHHhcCCCCCcE
Q 033929 28 PTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS------VIRAWDIALRSMKVGEV 85 (108)
Q Consensus 28 p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~------~~~g~~~al~~m~~Ge~ 85 (108)
..+.||.|.++.-+.. +|-..|. ..++.+|... ...+++.++..+++|-+
T Consensus 71 ~l~~GDvV~iD~G~~~--dGY~aD~------arT~~vG~~~~~l~~a~~~a~~aai~~ikpG~~ 126 (291)
T PRK08671 71 VFPEGDVVKLDLGAHV--DGYIADT------AVTVDLGGKYEDLVEASEEALEAAIEVVRPGVS 126 (291)
T ss_pred ccCCCCEEEEEEeEEE--CCEEEEE------EEEEEeChhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4556899999987776 7766554 4456676422 34667778888888854
No 26
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=58.33 E-value=51 Score=23.35 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=35.0
Q ss_pred CCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCC--c----hhHHHHHHhcCCCCCcEE
Q 033929 28 PTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKG--S----VIRAWDIALRSMKVGEVA 86 (108)
Q Consensus 28 p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~--~----~~~g~~~al~~m~~Ge~~ 86 (108)
..+.||.|.++.-+.. ||-..|. ..+|.+|.. . ...+++.|+..+++|-+.
T Consensus 74 ~l~~GDvV~iD~G~~~--dGY~aD~------arT~~vG~~~~~l~~a~~~A~~aai~~~kPGv~~ 130 (295)
T TIGR00501 74 VFKDGDVVKLDLGAHV--DGYIADT------AITVDLGDQYDNLVKAAKDALYTAIKEIRAGVRV 130 (295)
T ss_pred cCCCCCEEEEEEeEEE--CCEEEEE------EEEEEeCcHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4556899999987776 7865553 456667753 2 345677788888887653
No 27
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=57.60 E-value=52 Score=23.20 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=35.3
Q ss_pred CCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCc------hhHHHHHHhcCCCCCcEE
Q 033929 28 PTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS------VIRAWDIALRSMKVGEVA 86 (108)
Q Consensus 28 p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~------~~~g~~~al~~m~~Ge~~ 86 (108)
..+.||.|.++.-+.. +|-.-|. ..+|.+|... ...+++.++..|++|-+.
T Consensus 70 ~l~~GDvV~iD~G~~~--dGY~sD~------arT~~vg~~~~~l~ea~~~A~~~ai~~ikPG~~~ 126 (291)
T cd01088 70 VLKEGDVVKLDFGAHV--DGYIADS------AFTVDFDPKYDDLLEAAKEALNAAIKEAGPDVRL 126 (291)
T ss_pred ccCCCCEEEEEEEEEE--CCEEEEE------EEEEecChhHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 4556899999987766 7765553 4456666432 346788888888988754
No 28
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=57.55 E-value=71 Score=23.74 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=36.5
Q ss_pred CCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCC----------ch----hHHHHHHhcCCCCCcEEE
Q 033929 27 SPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKG----------SV----IRAWDIALRSMKVGEVAK 87 (108)
Q Consensus 27 ~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~----------~~----~~g~~~al~~m~~Ge~~~ 87 (108)
+..+.||.|.|++-+.. ||-..+. ..+|.+|.. .+ ..+++.++..|++|-+..
T Consensus 99 ~~Lk~GDvVkIDlG~~i--dGY~aD~------arTv~vG~~~~~~~t~~~~~l~~aa~~A~~aai~~vkPG~~~~ 165 (389)
T TIGR00495 99 YILKEGDVVKIDLGCHI--DGFIALV------AHTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLVKPGNTNT 165 (389)
T ss_pred cCcCCCCEEEEEEEEEE--CCEEEEE------EEEEEECCcccccCCHHHHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 34567899999998887 7876664 455667631 12 356778888999986543
No 29
>PRK12897 methionine aminopeptidase; Reviewed
Probab=56.75 E-value=60 Score=22.11 Aligned_cols=53 Identities=19% Similarity=0.301 Sum_probs=35.8
Q ss_pred CCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCc---------hhHHHHHHhcCCCCCcEEE
Q 033929 27 SPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS---------VIRAWDIALRSMKVGEVAK 87 (108)
Q Consensus 27 ~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~---------~~~g~~~al~~m~~Ge~~~ 87 (108)
++.+.||.|.+++-+.. +|-.-|. ..+|.+|.-. +..+++.++..+++|-+..
T Consensus 83 ~~l~~Gd~V~iD~g~~~--~GY~sD~------tRT~~vG~~s~~~~~~~~~~~~a~~~~i~~~kpG~~~~ 144 (248)
T PRK12897 83 VPLTEGDIVTIDMVVNL--NGGLSDS------AWTYRVGKVSDEAEKLLLVAENALYKGIDQAVIGNRVG 144 (248)
T ss_pred cccCCCCEEEEEeeEEE--CCEEEEE------EEEEEcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 45667899999988766 5655543 3556667422 3457777888889986543
No 30
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=54.74 E-value=37 Score=26.05 Aligned_cols=51 Identities=8% Similarity=0.167 Sum_probs=35.6
Q ss_pred CCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCC--c----hhHHHHHHhcCCCCCcEE
Q 033929 28 PTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKG--S----VIRAWDIALRSMKVGEVA 86 (108)
Q Consensus 28 p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~--~----~~~g~~~al~~m~~Ge~~ 86 (108)
..+.||.|.|++-+.. +|-..|.+ ++|.+|.. . +..+++.||..+++|-+.
T Consensus 233 vLk~GDvVkID~G~~v--dGYiaD~A------rTv~vg~~~~~L~eAv~eA~~aaI~~~kpGv~~ 289 (470)
T PTZ00053 233 VLTYDDVCKLDFGTHV--NGRIIDCA------FTVAFNPKYDPLLQATKDATNTGIKEAGIDVRL 289 (470)
T ss_pred EecCCCeEEEEEeEEE--CCEEEeEE------EEEEeCHHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 4566899999999887 88888753 44555632 1 345677788888887653
No 31
>PLN03158 methionine aminopeptidase; Provisional
Probab=54.34 E-value=85 Score=23.47 Aligned_cols=51 Identities=22% Similarity=0.135 Sum_probs=36.3
Q ss_pred CCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCc---------hhHHHHHHhcCCCCCcE
Q 033929 27 SPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS---------VIRAWDIALRSMKVGEV 85 (108)
Q Consensus 27 ~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~---------~~~g~~~al~~m~~Ge~ 85 (108)
++.+.||.|.++..+++ +|-.-| -..+|.+|.-. ...+++.++..+++|-+
T Consensus 216 r~L~~GDiV~iDvg~~~--~GY~aD------~tRT~~VG~~~~e~~~l~e~~~eal~~aI~~vkPGv~ 275 (396)
T PLN03158 216 RKLEDGDIVNVDVTVYY--KGCHGD------LNETFFVGNVDEASRQLVKCTYECLEKAIAIVKPGVR 275 (396)
T ss_pred ccCCCCCEEEEEEeEEE--CCEEEe------EEeEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 56677899999999887 675444 34556667421 45678888888899854
No 32
>PRK00809 hypothetical protein; Provisional
Probab=49.05 E-value=30 Score=21.97 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=20.3
Q ss_pred hhHHHHHHhcCCCCCcEEEEEEcCC
Q 033929 69 VIRAWDIALRSMKVGEVAKLTCKPE 93 (108)
Q Consensus 69 ~~~g~~~al~~m~~Ge~~~~~ip~~ 93 (108)
+..+=...|..|++||++.+..+..
T Consensus 24 ~~~~~rn~lr~Mk~GD~v~fYhs~~ 48 (144)
T PRK00809 24 VPERYKNTIEKVKPGDKLIIYVSQE 48 (144)
T ss_pred cchhhhhHHhhCCCCCEEEEEECCc
Confidence 4455667788899999999999876
No 33
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=46.19 E-value=27 Score=22.30 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.2
Q ss_pred hhHHHHHHhcCCCCCcEEEEEEcCC
Q 033929 69 VIRAWDIALRSMKVGEVAKLTCKPE 93 (108)
Q Consensus 69 ~~~g~~~al~~m~~Ge~~~~~ip~~ 93 (108)
+..-+-.||.|.++|+.+.+.+|..
T Consensus 122 ~~SPlG~aLlGk~~Gd~v~~~~p~g 146 (157)
T PRK00226 122 IESPIARALIGKKVGDTVEVTTPGG 146 (157)
T ss_pred cCChHHHHHhCCCCCCEEEEEcCCC
Confidence 3456889999999999999999865
No 34
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=45.74 E-value=31 Score=21.92 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.4
Q ss_pred hhHHHHHHhcCCCCCcEEEEEEcCC
Q 033929 69 VIRAWDIALRSMKVGEVAKLTCKPE 93 (108)
Q Consensus 69 ~~~g~~~al~~m~~Ge~~~~~ip~~ 93 (108)
+..-+-.||.|.++|+.+.+.+|..
T Consensus 117 ~~SPlG~ALlG~~~Gd~v~v~~p~g 141 (151)
T TIGR01462 117 IDSPLGKALIGKKVGDVVEVQTPKG 141 (151)
T ss_pred CCCHHHHHHcCCCCCCEEEEEeCCC
Confidence 4456889999999999999998865
No 35
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=45.56 E-value=25 Score=22.06 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.2
Q ss_pred hhHHHHHHhcCCCCCcEEEEEEcCC
Q 033929 69 VIRAWDIALRSMKVGEVAKLTCKPE 93 (108)
Q Consensus 69 ~~~g~~~al~~m~~Ge~~~~~ip~~ 93 (108)
+..-+-.||.|.++|+.+.+..|..
T Consensus 91 i~SPlG~ALlG~~~Gd~v~v~~p~G 115 (137)
T PRK05753 91 VLAPVGAALLGLSVGQSIDWPLPGG 115 (137)
T ss_pred ccCHHHHHHcCCCCCCEEEEECCCC
Confidence 3556889999999999999988864
No 36
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=45.21 E-value=35 Score=19.25 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=20.1
Q ss_pred HHHHHhcCCCCCcEEEEEEcCCcc
Q 033929 72 AWDIALRSMKVGEVAKLTCKPEYA 95 (108)
Q Consensus 72 g~~~al~~m~~Ge~~~~~ip~~~a 95 (108)
-...+|..|++|+...+......+
T Consensus 21 ~~kk~l~~m~~Ge~LeV~~ddp~~ 44 (78)
T COG0425 21 ETKKALAKLKPGEILEVIADDPAA 44 (78)
T ss_pred HHHHHHHcCCCCCEEEEEecCcch
Confidence 467999999999999999876544
No 37
>PRK12318 methionine aminopeptidase; Provisional
Probab=43.92 E-value=1.1e+02 Score=21.56 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=34.1
Q ss_pred CCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCc---------hhHHHHHHhcCCCCCcE
Q 033929 27 SPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS---------VIRAWDIALRSMKVGEV 85 (108)
Q Consensus 27 ~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~---------~~~g~~~al~~m~~Ge~ 85 (108)
++.+.||.|.+++-+.. +|-.-| -..+|.+|.-. +..+++.++..+++|-+
T Consensus 124 ~~l~~GD~V~vD~g~~~--~GY~aD------itRT~~vG~~~~~~~~~~~~~~~a~~~~i~~~rpG~~ 183 (291)
T PRK12318 124 IPLKNGDIMNIDVSCIV--DGYYGD------CSRMVMIGEVSEIKKKVCQASLECLNAAIAILKPGIP 183 (291)
T ss_pred CccCCCCEEEEEEeEEE--CcEEEE------EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46667899999998776 665444 34566677421 34566777788888854
No 38
>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5.2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....
Probab=43.33 E-value=26 Score=20.07 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=20.8
Q ss_pred CCCchhHHHHHHhcCCCCCcEEEEE
Q 033929 65 GKGSVIRAWDIALRSMKVGEVAKLT 89 (108)
Q Consensus 65 g~~~~~~g~~~al~~m~~Ge~~~~~ 89 (108)
..+++.+.|+++|..|++|+....+
T Consensus 58 ~~~~l~~~~~~~~~~l~~Gevs~pi 82 (95)
T PF00639_consen 58 SRGQLPPEFEKALFALKPGEVSKPI 82 (95)
T ss_dssp ETTSSBHHHHHHHHTSTTTSBEEEE
T ss_pred cCCcccHHHHHHHHhCCCCCcCCCE
Confidence 3447999999999999999987544
No 39
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=41.98 E-value=1.1e+02 Score=20.61 Aligned_cols=52 Identities=17% Similarity=0.223 Sum_probs=34.4
Q ss_pred CCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCC-------c-------hhHHHHHHhcCCCCCcEE
Q 033929 27 SPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKG-------S-------VIRAWDIALRSMKVGEVA 86 (108)
Q Consensus 27 ~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~-------~-------~~~g~~~al~~m~~Ge~~ 86 (108)
+..+.||.|.+++-+.. +|-.-| ...+|.+|.. . ...+.+.++..+++|-+.
T Consensus 81 ~~l~~Gd~v~iD~g~~~--~GY~sD------~tRT~~vG~~~~~~~~~~~~~~~~~~~ea~~~~~~~~kpG~~~ 146 (228)
T cd01089 81 YTLKDGDVVKIDLGCHI--DGYIAV------VAHTIVVGAEAETPVTGKKADVIAAAHYALEAALRLLRPGNQN 146 (228)
T ss_pred cccCCCCEEEEEEEEEE--CCEEEE------EEEEEEeCCcCccccchHHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 34566899999998777 675444 3455666642 1 135567788888988653
No 40
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=41.61 E-value=37 Score=21.83 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=20.8
Q ss_pred hHHHHHHhcCCCCCcEEEEEEcCC
Q 033929 70 IRAWDIALRSMKVGEVAKLTCKPE 93 (108)
Q Consensus 70 ~~g~~~al~~m~~Ge~~~~~ip~~ 93 (108)
..-+-.||.|.++||.+.+.+|..
T Consensus 120 ~SPlG~ALlGk~~GD~v~v~~p~g 143 (156)
T TIGR01461 120 DSPLARALLKKEVGDEVVVNTPAG 143 (156)
T ss_pred CCHHHHHHcCCCCCCEEEEEcCCC
Confidence 345889999999999999998875
No 41
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=39.87 E-value=31 Score=23.19 Aligned_cols=29 Identities=10% Similarity=0.012 Sum_probs=22.5
Q ss_pred CCchhHHHHHHhcCCCCCcEEEEEEcCCccc
Q 033929 66 KGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 96 (108)
Q Consensus 66 ~~~~~~g~~~al~~m~~Ge~~~~~ip~~~ay 96 (108)
.+++.+.|.+++..|++|+.. . |....+|
T Consensus 189 ~~~l~~~~~~a~~~l~~G~is-~-v~s~~G~ 217 (232)
T TIGR02925 189 AEQLPAEILAVLAKLKPGAPL-V-VQGPNNV 217 (232)
T ss_pred hhhCCHHHHHHHHhCCCCCeE-E-eecCCce
Confidence 457899999999999999975 3 5555444
No 42
>PRK12896 methionine aminopeptidase; Reviewed
Probab=39.30 E-value=1.2e+02 Score=20.51 Aligned_cols=51 Identities=25% Similarity=0.261 Sum_probs=33.4
Q ss_pred CCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCc---------hhHHHHHHhcCCCCCcE
Q 033929 27 SPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS---------VIRAWDIALRSMKVGEV 85 (108)
Q Consensus 27 ~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~---------~~~g~~~al~~m~~Ge~ 85 (108)
++.+.||.|.+++-+.. +|-.-| -..+|.+|.-. +..+++.++..|++|-+
T Consensus 89 ~~l~~Gd~v~iD~g~~~--~gY~aD------~~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~ 148 (255)
T PRK12896 89 RVIKDGDLVNIDVSAYL--DGYHGD------TGITFAVGPVSEEAEKLCRVAEEALWAGIKQVKAGRP 148 (255)
T ss_pred ccCCCCCEEEEEEeEEE--CcEEEe------eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566899999988776 564333 34556677421 34677778888888744
No 43
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=38.06 E-value=1.2e+02 Score=20.23 Aligned_cols=51 Identities=22% Similarity=0.200 Sum_probs=33.8
Q ss_pred CCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCc---------hhHHHHHHhcCCCCCcE
Q 033929 27 SPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS---------VIRAWDIALRSMKVGEV 85 (108)
Q Consensus 27 ~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~---------~~~g~~~al~~m~~Ge~ 85 (108)
++.+.||.|.+.+-+.. +|-.-+ -..+|.+|... +..+.+.++..|++|-+
T Consensus 74 ~~l~~Gd~v~id~g~~~--~GY~ad------~~RT~~~G~~~~~~~~~~~~~~~~~~~~~~~~~pG~~ 133 (238)
T cd01086 74 RVLKDGDIVNIDVGVEL--DGYHGD------SARTFIVGEVSEEAKKLVEVTEEALYKGIEAVKPGNR 133 (238)
T ss_pred cccCCCCEEEEEEEEEE--CCEEEE------EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566899999988776 665443 34566677531 34567777778888754
No 44
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=36.88 E-value=46 Score=21.47 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=20.6
Q ss_pred hHHHHHHhcCCCCCcEEEEEEcCC
Q 033929 70 IRAWDIALRSMKVGEVAKLTCKPE 93 (108)
Q Consensus 70 ~~g~~~al~~m~~Ge~~~~~ip~~ 93 (108)
..-|-.||.+.++||.+.+..|..
T Consensus 122 ~SPlG~ALlGk~vGD~v~v~~p~g 145 (158)
T PRK05892 122 DSPLGQALAGHQAGDTVTYSTPQG 145 (158)
T ss_pred CCHHHHHHhCCCCCCEEEEEcCCC
Confidence 345889999999999999998875
No 45
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=36.50 E-value=56 Score=17.70 Aligned_cols=22 Identities=32% Similarity=0.238 Sum_probs=18.2
Q ss_pred HHHHHhcCCCCCcEEEEEEcCC
Q 033929 72 AWDIALRSMKVGEVAKLTCKPE 93 (108)
Q Consensus 72 g~~~al~~m~~Ge~~~~~ip~~ 93 (108)
-..++|..|..|+...+.+.-.
T Consensus 15 ~~kkal~~l~~G~~l~V~~d~~ 36 (69)
T cd03422 15 ATLEALPSLKPGEILEVISDCP 36 (69)
T ss_pred HHHHHHHcCCCCCEEEEEecCc
Confidence 3678999999999999888644
No 46
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=36.29 E-value=1.4e+02 Score=20.21 Aligned_cols=51 Identities=24% Similarity=0.156 Sum_probs=34.2
Q ss_pred CCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCc---------hhHHHHHHhcCCCCCcE
Q 033929 27 SPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS---------VIRAWDIALRSMKVGEV 85 (108)
Q Consensus 27 ~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~---------~~~g~~~al~~m~~Ge~ 85 (108)
+....||.|.+++-+.. +|-.-| -..+|.+|.-. +..+++.++..+++|-+
T Consensus 82 ~~l~~Gd~v~iD~g~~~--~gY~aD------~~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~ 141 (247)
T TIGR00500 82 KVLKDGDIVNIDVGVIY--DGYHGD------TAKTFLVGKISPEAEKLLECTEESLYKAIEEAKPGNR 141 (247)
T ss_pred cccCCCCEEEEEEEEEE--CCEEEE------EEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45556899999988876 565444 34566666411 34667788888888855
No 47
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=36.07 E-value=61 Score=17.51 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=18.1
Q ss_pred HHHHhcCCCCCcEEEEEEcCC
Q 033929 73 WDIALRSMKVGEVAKLTCKPE 93 (108)
Q Consensus 73 ~~~al~~m~~Ge~~~~~ip~~ 93 (108)
...+|..|+.|+...+.+.-.
T Consensus 16 ~kkal~~l~~G~~l~V~~d~~ 36 (69)
T cd03420 16 LKKEIDKLQDGEQLEVKASDP 36 (69)
T ss_pred HHHHHHcCCCCCEEEEEECCc
Confidence 678999999999999888644
No 48
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=35.84 E-value=1.5e+02 Score=21.81 Aligned_cols=53 Identities=19% Similarity=0.146 Sum_probs=34.9
Q ss_pred CCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCc---------hhHHHHHHhcCCCCCcEEE
Q 033929 27 SPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS---------VIRAWDIALRSMKVGEVAK 87 (108)
Q Consensus 27 ~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~---------~~~g~~~al~~m~~Ge~~~ 87 (108)
++.+.||.|.+++-+.. +|-.-| -..+|.+|.-. +..+.+.++..+++|-++.
T Consensus 236 ~~l~~gd~v~iD~g~~~--~GY~sD------~tRT~~vG~p~~~~~~~~~~~~~a~~~~i~~ikpG~~~~ 297 (391)
T TIGR02993 236 SPMKVGEGTFFEIAGCY--KRYHCP------LSRTVFLGKPTQAFLDAEKAVLEGMEAGLEAAKPGNTCE 297 (391)
T ss_pred CcccCCCEEEEEeeeec--ccCccc------eeEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence 45566899999887665 443322 45667777422 4567778888888887643
No 49
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=34.32 E-value=54 Score=21.09 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=20.8
Q ss_pred hHHHHHHhcCCCCCcEEEEEEcCC
Q 033929 70 IRAWDIALRSMKVGEVAKLTCKPE 93 (108)
Q Consensus 70 ~~g~~~al~~m~~Ge~~~~~ip~~ 93 (108)
..-+-.||.+.++|+.+.+.+|..
T Consensus 122 ~SPlG~ALlGk~vGd~v~v~~p~g 145 (157)
T PRK01885 122 DSPMARALLKKEVGDEVTVNTPAG 145 (157)
T ss_pred cCHHHHHHhCCCCCCEEEEEcCCC
Confidence 345889999999999999998875
No 50
>PRK12426 elongation factor P; Provisional
Probab=32.50 E-value=1.5e+02 Score=19.73 Aligned_cols=61 Identities=11% Similarity=0.158 Sum_probs=34.0
Q ss_pred CCCCCCEEEEEEEEEEcCCCcEEeccCCCCe----------eEEEEcCCCc-------------hh--HHHHHHhcCCCC
Q 033929 28 PTEDLPLVDVHYEGSLAETGEVFDTTHEDNT----------VFSFELGKGS-------------VI--RAWDIALRSMKV 82 (108)
Q Consensus 28 p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~----------~~~~~~g~~~-------------~~--~g~~~al~~m~~ 82 (108)
|-+++.+|++..+ ...+|.+++.++..+. +++|..-++. .+ .-+..++.-|+.
T Consensus 30 PGkg~A~vr~klk--nl~tG~~~e~tf~s~ek~e~a~ve~~~~qylY~dg~~~~FMd~etyeQi~i~~~~lgd~~~fL~e 107 (185)
T PRK12426 30 GPKGETFIKVSLQ--AADSDVVVERNFKAGQEVKEAQFEPRNLEYLYLEGDEYLFLDLGNYDKIYIPKEIMKDNFLFLKA 107 (185)
T ss_pred CCCCceEEEEEEE--EcCCCCeEEEEECCCCeEEEeEEEeeEeEEEEECCCeEEEecCCCceEEEeCHHHhhhHHhhccC
Confidence 4444445555544 4448888888875432 3333332221 12 246677788888
Q ss_pred CcEEEEEE
Q 033929 83 GEVAKLTC 90 (108)
Q Consensus 83 Ge~~~~~i 90 (108)
|..+.+..
T Consensus 108 ~~~v~v~~ 115 (185)
T PRK12426 108 GVTVSALV 115 (185)
T ss_pred CCEEEEEE
Confidence 88776543
No 51
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=32.23 E-value=1.2e+02 Score=19.32 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=19.8
Q ss_pred hhHHHHHHhcCCCCCcEEEEEEc
Q 033929 69 VIRAWDIALRSMKVGEVAKLTCK 91 (108)
Q Consensus 69 ~~~g~~~al~~m~~Ge~~~~~ip 91 (108)
...-+-.||.+.++|+.+.+..|
T Consensus 115 ~~SPig~aLlGk~vGd~v~v~~p 137 (151)
T COG0782 115 VDSPLGRALLGKKVGDTVEVNTP 137 (151)
T ss_pred ccCHHHHHHhCCCCCCEEEEecC
Confidence 34557799999999999999988
No 52
>PRK05716 methionine aminopeptidase; Validated
Probab=32.16 E-value=1.6e+02 Score=19.84 Aligned_cols=52 Identities=19% Similarity=0.157 Sum_probs=33.8
Q ss_pred CCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCc---------hhHHHHHHhcCCCCCcEE
Q 033929 27 SPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS---------VIRAWDIALRSMKVGEVA 86 (108)
Q Consensus 27 ~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~---------~~~g~~~al~~m~~Ge~~ 86 (108)
+..+.||.|.+.+-+.. +|-.-+ -..+|.+|.-. +..+++.++..|++|-+.
T Consensus 84 ~~l~~Gd~v~id~g~~~--~gY~~d------~~RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~ 144 (252)
T PRK05716 84 KVLKEGDIVNIDVTVIK--DGYHGD------TSRTFGVGEISPEDKRLCEVTKEALYLGIAAVKPGARL 144 (252)
T ss_pred cccCCCCEEEEEEEEEE--CCEEEE------eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 45566799999988776 565444 34556667532 345677777888887553
No 53
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=31.21 E-value=75 Score=16.91 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=18.7
Q ss_pred HHHHHhcCCCCCcEEEEEEcCCcc
Q 033929 72 AWDIALRSMKVGEVAKLTCKPEYA 95 (108)
Q Consensus 72 g~~~al~~m~~Ge~~~~~ip~~~a 95 (108)
-+..+|..|..|+...+.+.-..+
T Consensus 16 ~~~~~l~~l~~G~~l~v~~d~~~~ 39 (70)
T PF01206_consen 16 KAKKALKELPPGEVLEVLVDDPAA 39 (70)
T ss_dssp HHHHHHHTSGTT-EEEEEESSTTH
T ss_pred HHHHHHHhcCCCCEEEEEECCccH
Confidence 467899999999999999876543
No 54
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=30.77 E-value=76 Score=15.68 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=18.0
Q ss_pred hhHHHHHHhcCCCCCcEEEEEEcCC
Q 033929 69 VIRAWDIALRSMKVGEVAKLTCKPE 93 (108)
Q Consensus 69 ~~~g~~~al~~m~~Ge~~~~~ip~~ 93 (108)
++..|.+.+ ++++|+.+.+.+...
T Consensus 11 iPk~~~~~l-~l~~Gd~v~i~~~~~ 34 (47)
T PF04014_consen 11 IPKEIREKL-GLKPGDEVEIEVEGD 34 (47)
T ss_dssp E-HHHHHHT-TSSTTTEEEEEEETT
T ss_pred CCHHHHHHc-CCCCCCEEEEEEeCC
Confidence 456677776 899999999887653
No 55
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=29.88 E-value=58 Score=17.87 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=13.7
Q ss_pred HHHHHHhc--CCCCCcEEEE
Q 033929 71 RAWDIALR--SMKVGEVAKL 88 (108)
Q Consensus 71 ~g~~~al~--~m~~Ge~~~~ 88 (108)
.|++++|. |.+.|+.+.|
T Consensus 43 ~Gv~~~L~~~G~~~GD~V~I 62 (69)
T TIGR03595 43 LGVEDALRKAGAKDGDTVRI 62 (69)
T ss_pred CCHHHHHHHcCCCCCCEEEE
Confidence 46888885 6688988876
No 56
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=29.30 E-value=74 Score=17.30 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=12.0
Q ss_pred hcCCCCCcEEEEEEc
Q 033929 77 LRSMKVGEVAKLTCK 91 (108)
Q Consensus 77 l~~m~~Ge~~~~~ip 91 (108)
+.++++|.++.+...
T Consensus 35 ~~~L~~G~kV~V~yd 49 (61)
T PF07076_consen 35 FDGLKPGMKVVVFYD 49 (61)
T ss_pred ccccCCCCEEEEEEE
Confidence 678899999888754
No 57
>PRK12450 foldase protein PrsA; Reviewed
Probab=28.95 E-value=43 Score=23.90 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=22.6
Q ss_pred EEEcCCCchhHHHHHHhcCCCCCcEEEEE
Q 033929 61 SFELGKGSVIRAWDIALRSMKVGEVAKLT 89 (108)
Q Consensus 61 ~~~~g~~~~~~g~~~al~~m~~Ge~~~~~ 89 (108)
.|.-+..++.+.|++|+..|++|+...++
T Consensus 194 ~f~~~~~~l~~ef~~aa~~Lk~GevS~~i 222 (309)
T PRK12450 194 TFDSGETTLPAEVVRAASGLKEGNRSEII 222 (309)
T ss_pred cccCCCCCCCHHHHHHHHcCCCCCccccc
Confidence 34444567999999999999999986544
No 58
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=28.90 E-value=80 Score=18.85 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.7
Q ss_pred HHHHhcCCCCCcEEEEEEcCCcccC
Q 033929 73 WDIALRSMKVGEVAKLTCKPEYAYG 97 (108)
Q Consensus 73 ~~~al~~m~~Ge~~~~~ip~~~ayg 97 (108)
+..+|+..++||++.|.|.|+.--|
T Consensus 26 lsr~l~ey~~Gd~V~I~IdpSv~kG 50 (98)
T COG2139 26 LSRYLQEYKVGDKVHIDIDPSVHKG 50 (98)
T ss_pred hhhHHhhccCCCEEEEEeCcccccC
Confidence 7889999999999999999876443
No 59
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=27.92 E-value=61 Score=18.55 Aligned_cols=19 Identities=16% Similarity=0.308 Sum_probs=11.6
Q ss_pred HHhcCCCCCcEEEEEEcCC
Q 033929 75 IALRSMKVGEVAKLTCKPE 93 (108)
Q Consensus 75 ~al~~m~~Ge~~~~~ip~~ 93 (108)
..|..+++|++..|.+..+
T Consensus 38 k~L~~L~pGq~l~f~~d~~ 56 (85)
T PF04225_consen 38 KPLTRLKPGQTLEFQLDED 56 (85)
T ss_dssp --GGG--TT-EEEEEE-TT
T ss_pred chHhhCCCCCEEEEEECCC
Confidence 6789999999999999764
No 60
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=27.80 E-value=52 Score=18.03 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=16.2
Q ss_pred eeEEEEcCCCchhHHHHHHhcCCCCCcEEEEEEcC
Q 033929 58 TVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKP 92 (108)
Q Consensus 58 ~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~~~ip~ 92 (108)
-...|.+-+.. .|.++++|+++.|.+--
T Consensus 28 MTM~F~v~~~~-------~l~~l~~Gd~V~F~~~~ 55 (70)
T PF11604_consen 28 MTMDFPVADPV-------DLAGLKPGDKVRFTFER 55 (70)
T ss_dssp EEEEEE--TTS-------EESS-STT-EEEEEEEE
T ss_pred eEEEEEcCChh-------hhhcCCCCCEEEEEEEE
Confidence 35566665433 35789999999988753
No 61
>PRK11018 hypothetical protein; Provisional
Probab=27.21 E-value=97 Score=17.25 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=18.2
Q ss_pred HHHHHhcCCCCCcEEEEEEcCC
Q 033929 72 AWDIALRSMKVGEVAKLTCKPE 93 (108)
Q Consensus 72 g~~~al~~m~~Ge~~~~~ip~~ 93 (108)
-...+|..|+.|+...+.+.-.
T Consensus 24 ~~kk~l~~l~~G~~L~V~~d~~ 45 (78)
T PRK11018 24 ATLEALPQLKKGEILEVVSDCP 45 (78)
T ss_pred HHHHHHHhCCCCCEEEEEeCCc
Confidence 4678999999999999888643
No 62
>PRK07281 methionine aminopeptidase; Reviewed
Probab=27.16 E-value=2.3e+02 Score=20.05 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=19.0
Q ss_pred eeEEEEcCCCc---------hhHHHHHHhcCCCCCcEE
Q 033929 58 TVFSFELGKGS---------VIRAWDIALRSMKVGEVA 86 (108)
Q Consensus 58 ~~~~~~~g~~~---------~~~g~~~al~~m~~Ge~~ 86 (108)
...+|.+|.-. +..+++.++..+++|-++
T Consensus 137 ~~rT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kpG~~~ 174 (286)
T PRK07281 137 SCWAYAVGTPSDEVKNLMDVTKEAMYRGIEQAVVGNRI 174 (286)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 34667777422 346677888888888654
No 63
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=26.47 E-value=1.2e+02 Score=16.35 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=17.8
Q ss_pred HHHHhcCCCCCcEEEEEEcCC
Q 033929 73 WDIALRSMKVGEVAKLTCKPE 93 (108)
Q Consensus 73 ~~~al~~m~~Ge~~~~~ip~~ 93 (108)
...+|..|..|+...+.+.-.
T Consensus 16 ~k~~l~~l~~G~~l~V~~dd~ 36 (69)
T cd03423 16 LHKKVRKMKPGDTLLVLATDP 36 (69)
T ss_pred HHHHHHcCCCCCEEEEEeCCC
Confidence 678999999999999888643
No 64
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=26.41 E-value=1.1e+02 Score=17.19 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=18.6
Q ss_pred HHHHHhcCCCCCcEEEEEEcCC
Q 033929 72 AWDIALRSMKVGEVAKLTCKPE 93 (108)
Q Consensus 72 g~~~al~~m~~Ge~~~~~ip~~ 93 (108)
-..++|..|+.|+...+...-.
T Consensus 25 ~~kk~l~~l~~G~~l~V~~dd~ 46 (81)
T PRK00299 25 MVRKTVRNMQPGETLLIIADDP 46 (81)
T ss_pred HHHHHHHcCCCCCEEEEEeCCc
Confidence 3889999999999999887643
No 65
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=25.74 E-value=47 Score=23.61 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=20.2
Q ss_pred EEcCCCchhHHHHHHhcCCCCCcEE
Q 033929 62 FELGKGSVIRAWDIALRSMKVGEVA 86 (108)
Q Consensus 62 ~~~g~~~~~~g~~~al~~m~~Ge~~ 86 (108)
|..+.+++.+.|++++..|++|+..
T Consensus 194 ~~~~~~~l~~~f~~a~~~L~~Geis 218 (298)
T PRK04405 194 FDSTDTTLDSTFKTAAFKLKNGEYT 218 (298)
T ss_pred cccCCCCCCHHHHHHHHcCCCCCcc
Confidence 3334567899999999999999964
No 66
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=25.73 E-value=62 Score=20.05 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=12.8
Q ss_pred HhcCCCCCcEEEEEEcC
Q 033929 76 ALRSMKVGEVAKLTCKP 92 (108)
Q Consensus 76 al~~m~~Ge~~~~~ip~ 92 (108)
.|..|++||++.|..+.
T Consensus 36 ~l~~mk~GD~vifY~s~ 52 (143)
T PF01878_consen 36 NLKRMKPGDKVIFYHSG 52 (143)
T ss_dssp HHHC--TT-EEEEEETS
T ss_pred hhhcCCCCCEEEEEEcC
Confidence 78899999999999987
No 67
>PRK02268 hypothetical protein; Provisional
Probab=25.57 E-value=81 Score=20.10 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=19.5
Q ss_pred hHHHHHHhcCCCCCcEEEEEEcCCc
Q 033929 70 IRAWDIALRSMKVGEVAKLTCKPEY 94 (108)
Q Consensus 70 ~~g~~~al~~m~~Ge~~~~~ip~~~ 94 (108)
.-|=...|..|++||.+.+..|-..
T Consensus 26 ~hgK~apl~RmkpGD~ivyYsp~~~ 50 (141)
T PRK02268 26 CHGKAAPLRRMKPGDWIIYYSPKTT 50 (141)
T ss_pred CCCccchhhcCCCCCEEEEEeceEe
Confidence 3344567899999999999988655
No 68
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.11 E-value=56 Score=22.31 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=20.8
Q ss_pred CCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEE
Q 033929 9 GDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGS 42 (108)
Q Consensus 9 ~~~gi~~~il~~G~g~~~~p~~~gd~V~v~y~~~ 42 (108)
.-+|++++||++|.- ++ ||.+++-+...
T Consensus 137 G~~G~y~RVL~~G~v---~~---gD~l~l~~r~~ 164 (210)
T COG2258 137 GRTGWYARVLEEGKV---RA---GDPLKLIPRPS 164 (210)
T ss_pred CcccEEEEEccccee---cC---CCceEEecCCC
Confidence 445899999998774 33 58888887764
No 69
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=23.84 E-value=84 Score=21.59 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=19.5
Q ss_pred cCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEE
Q 033929 8 TGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYE 40 (108)
Q Consensus 8 ~~~~gi~~~il~~G~g~~~~p~~~gd~V~v~y~ 40 (108)
+...|.|++||++|.- .+ ||.|++.-.
T Consensus 139 ~g~~G~Y~RVL~~G~V---~~---GD~v~l~~r 165 (223)
T PRK11536 139 SGKCGWLYRVIAPGKV---SA---DAPLELVSR 165 (223)
T ss_pred hCCcEEEEEEECCcEE---cC---CCEEEEEeC
Confidence 3567999999999874 22 688877544
No 70
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=23.67 E-value=81 Score=17.27 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=10.9
Q ss_pred HHHHHHhc--CCCCCcEEEE
Q 033929 71 RAWDIALR--SMKVGEVAKL 88 (108)
Q Consensus 71 ~g~~~al~--~m~~Ge~~~~ 88 (108)
.|++++|. |.+.|+++.|
T Consensus 43 ~Gv~~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 43 MGVEKALRKAGAKEGDTVRI 62 (69)
T ss_dssp TTHHHHHHTTT--TT-EEEE
T ss_pred CCHHHHHHHcCCCCCCEEEE
Confidence 47888885 5578888765
No 71
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=23.28 E-value=2.4e+02 Score=20.94 Aligned_cols=40 Identities=10% Similarity=0.030 Sum_probs=31.6
Q ss_pred ceeccCCCCEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEE
Q 033929 4 SIDLTGDEGVIKKIVRQAKPDALSPTEDLPLVDVHYEGSL 43 (108)
Q Consensus 4 ~~d~~~~~gi~~~il~~G~g~~~~p~~~gd~V~v~y~~~~ 43 (108)
..++.+.+|+.|--+-+|.|-...|...|..+.+.++..-
T Consensus 43 ~l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~ 82 (442)
T KOG1452|consen 43 HLRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEP 82 (442)
T ss_pred eeeeecccceEEEEEecccccccChhccCceeeeeeeeee
Confidence 4578889999999999999987777777777777766543
No 72
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=23.16 E-value=1.3e+02 Score=15.76 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=17.9
Q ss_pred HHHHhcCCCCCcEEEEEEcCC
Q 033929 73 WDIALRSMKVGEVAKLTCKPE 93 (108)
Q Consensus 73 ~~~al~~m~~Ge~~~~~ip~~ 93 (108)
..++|..|..|+...+.....
T Consensus 16 ~~~~l~~l~~g~~l~v~~d~~ 36 (69)
T cd00291 16 TKKALEKLKSGEVLEVLLDDP 36 (69)
T ss_pred HHHHHhcCCCCCEEEEEecCC
Confidence 667899999999999988754
No 73
>PRK15173 peptidase; Provisional
Probab=22.55 E-value=3e+02 Score=19.73 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=32.9
Q ss_pred CCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCc---------hhHHHHHHhcCCCCCcEE
Q 033929 28 PTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS---------VIRAWDIALRSMKVGEVA 86 (108)
Q Consensus 28 p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~---------~~~g~~~al~~m~~Ge~~ 86 (108)
+...||.|.+++-+.. +|-.-| -..+|.+|.-. +..+.+.++..+++|-++
T Consensus 169 ~l~~Gd~V~iD~g~~~--~GY~aD------itRT~~vG~p~~~~~~~y~~v~ea~~~~~~~irPG~~~ 228 (323)
T PRK15173 169 KACSGDLIKFDCGVDV--DGYGAD------IARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKM 228 (323)
T ss_pred ccCCCCEEEEEeCccC--CCEeee------eEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 3456799999876644 554333 34566667422 456777888888988653
No 74
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=22.41 E-value=3.2e+02 Score=19.95 Aligned_cols=50 Identities=26% Similarity=0.357 Sum_probs=35.5
Q ss_pred CCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCc---------hhHHHHHHhcCCCCCcE
Q 033929 28 PTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGS---------VIRAWDIALRSMKVGEV 85 (108)
Q Consensus 28 p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~---------~~~g~~~al~~m~~Ge~ 85 (108)
..+.||.|.+++-+.. +|- ..+-..+|.+|.-. +..+.+.++..+++|-+
T Consensus 229 ~~~~gd~vliD~G~~~--~gY------~sDiTRT~~~G~~~~~~~~iy~~V~~aq~aa~~~~rpG~~ 287 (384)
T COG0006 229 KLRDGDLVLIDLGGVY--NGY------CSDITRTFPIGKPSDEQREIYEAVLEAQEAAIAAIRPGVT 287 (384)
T ss_pred cccCCCEEEEEeeeEE--CCc------cccceeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 3456799999998887 442 12256778888432 56888889999999874
No 75
>TIGR02178 yeiP elongation factor P-like protein YeiP. This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae.
Probab=22.28 E-value=2.5e+02 Score=18.75 Aligned_cols=42 Identities=17% Similarity=0.078 Sum_probs=23.3
Q ss_pred CEEEEEEEcCCCCCCCCCCCCCEEEEEEEEEEcCCCcEEeccCCC
Q 033929 12 GVIKKIVRQAKPDALSPTEDLPLVDVHYEGSLAETGEVFDTTHED 56 (108)
Q Consensus 12 gi~~~il~~G~g~~~~p~~~gd~V~v~y~~~~~~~g~~~~st~~~ 56 (108)
|-.|+|++.-. .+|...|..+.+..+.+...+|.+++.++..
T Consensus 15 g~~~~V~~~~~---~kpg~~ga~~~vk~klknl~tG~~~e~tf~s 56 (186)
T TIGR02178 15 GKTLLIKDIQR---SSPQGRGGNVRYKFRMYDVPTGSKVEERFKA 56 (186)
T ss_pred CEEEEEEEEEE---ECCCCCCCcEEEEEEEeEcCCCCeEEEEECC
Confidence 34455554322 1343334545555565655588888887754
No 76
>KOG3553 consensus Tax interaction protein TIP1 [Cell wall/membrane/envelope biogenesis]
Probab=21.92 E-value=1.1e+02 Score=18.57 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=13.1
Q ss_pred CCCCEEEEEEEcCCCC
Q 033929 9 GDEGVIKKIVRQAKPD 24 (108)
Q Consensus 9 ~~~gi~~~il~~G~g~ 24 (108)
+|+|||..-+.+|+..
T Consensus 57 tD~GiYvT~V~eGsPA 72 (124)
T KOG3553|consen 57 TDKGIYVTRVSEGSPA 72 (124)
T ss_pred CCccEEEEEeccCChh
Confidence 6889999988888753
No 77
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=21.74 E-value=1.7e+02 Score=19.20 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=25.1
Q ss_pred eeEEEEcCCCchhHHHHHHhcCC-------CCCcEEEEEEcC
Q 033929 58 TVFSFELGKGSVIRAWDIALRSM-------KVGEVAKLTCKP 92 (108)
Q Consensus 58 ~~~~~~~g~~~~~~g~~~al~~m-------~~Ge~~~~~ip~ 92 (108)
+.+.+..-+..++..++.|+... ..|...++.+|+
T Consensus 59 ~~l~I~p~D~~~i~~I~kAI~~s~l~l~P~~dg~~iri~iP~ 100 (179)
T cd00520 59 RTIVINPFDKSAIKAIEKAILNSDLGLNPNNDGAVIRVNLPP 100 (179)
T ss_pred CEEEEeecchhhHHHHHHHHHHCCCCCCcCcCCCEEEecCCC
Confidence 45667777778889999998754 346667777765
No 78
>PF00819 Myotoxins: Myotoxin; InterPro: IPR000881 Myotoxins [, , ] are small basic peptides (42 to 45 residues) found in rattlesnake venom that cause severe muscle necrosis by a non-enzymatic mechanism. Myotoxins act extremely rapidly and serve two primary biological functions: limiting the flight of prey by causing instantaneous paralysis of the hind limbs and promoting rapid death by paralysis of the diaphragm. Myotoxins have a well-conserved structure containing six cysteines involved in three disulphide bridges.; GO: 0019871 sodium channel inhibitor activity, 0005576 extracellular region; PDB: 1H5O_A 1Z99_A.
Probab=21.59 E-value=52 Score=16.04 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=10.5
Q ss_pred EEEEcCCcccCCCCC
Q 033929 87 KLTCKPEYAYGSAGS 101 (108)
Q Consensus 87 ~~~ip~~~ayg~~g~ 101 (108)
.|.|||+..||...+
T Consensus 16 ~ic~ppssdfgkmdc 30 (43)
T PF00819_consen 16 KICIPPSSDFGKMDC 30 (43)
T ss_dssp C--SSSSTCBBSSSS
T ss_pred ceECCCccccccccC
Confidence 378899999998665
No 79
>PRK15441 peptidyl-prolyl cis-trans isomerase C; Provisional
Probab=21.56 E-value=79 Score=18.08 Aligned_cols=22 Identities=27% Similarity=0.310 Sum_probs=18.2
Q ss_pred CCchhHHHHHHhcCCCCCcEEE
Q 033929 66 KGSVIRAWDIALRSMKVGEVAK 87 (108)
Q Consensus 66 ~~~~~~g~~~al~~m~~Ge~~~ 87 (108)
.+++.+.|++++..+++|+...
T Consensus 55 ~~~l~~~f~~a~~~l~~G~vs~ 76 (93)
T PRK15441 55 QGQMVPAFDKVVFSCPVLEPTG 76 (93)
T ss_pred ccccCHHHHHHHHhCCCCCcCC
Confidence 4568889999999999999543
No 80
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=21.01 E-value=2.7e+02 Score=18.67 Aligned_cols=51 Identities=27% Similarity=0.285 Sum_probs=32.1
Q ss_pred CCCCCCCEEEEEEEEEEcCCCcEEeccCCCCeeEEEEc-CCC---------chhHHHHHHhcCCCCCcE
Q 033929 27 SPTEDLPLVDVHYEGSLAETGEVFDTTHEDNTVFSFEL-GKG---------SVIRAWDIALRSMKVGEV 85 (108)
Q Consensus 27 ~p~~~gd~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~-g~~---------~~~~g~~~al~~m~~Ge~ 85 (108)
++...||.|.+++-+.. +|-.-|. ..+|.+ |.- .+..+++.++..+++|-+
T Consensus 68 ~~l~~Gd~v~vD~g~~~--~GY~ad~------~Rt~~vgg~~~~~~~~~~~~~~~a~~~~i~~~rpG~~ 128 (243)
T cd01087 68 QPLKDGDLVLIDAGAEY--GGYASDI------TRTFPVNGKFTDEQRELYEAVLAAQKAAIAACKPGVS 128 (243)
T ss_pred CcCCCCCEEEEEeCceE--CCEeeee------eEEEEeCCcCCHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 45666899999988776 5543332 344555 321 145667778888888843
No 81
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=20.71 E-value=96 Score=16.02 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=13.7
Q ss_pred HHHHHhcCCCCCcEEEEEEcCC
Q 033929 72 AWDIALRSMKVGEVAKLTCKPE 93 (108)
Q Consensus 72 g~~~al~~m~~Ge~~~~~ip~~ 93 (108)
.-...=.++++|+++.+.+.+.
T Consensus 39 ~~~~~~L~L~~G~~V~~~ik~~ 60 (64)
T PF03459_consen 39 PESAEELGLKPGDEVYASIKAS 60 (64)
T ss_dssp HHHHHHCT-STT-EEEEEE-GG
T ss_pred HHHHHHcCCCCCCEEEEEEehh
Confidence 3334446799999999999775
No 82
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=20.00 E-value=2.2e+02 Score=18.69 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=34.2
Q ss_pred CEEEEEEEEEEcCCCcEEeccCCCCeeEEEEcCCCchhHHHHHHhcCC-------CCCcEEEEEEcC
Q 033929 33 PLVDVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSM-------KVGEVAKLTCKP 92 (108)
Q Consensus 33 d~V~v~y~~~~~~~g~~~~st~~~~~~~~~~~g~~~~~~g~~~al~~m-------~~Ge~~~~~ip~ 92 (108)
|.|.|+|-+....=.++..=+....+.+.+..-+...+..++.||... .-|..+++.+|+
T Consensus 29 d~I~V~~yg~~~pL~~lA~vsv~~~~~l~I~p~D~~~~~~I~kAI~~s~lglnP~~dg~~Iri~iP~ 95 (176)
T TIGR00496 29 DRILVEYYGAPTPLRQLASVTVPDARTLVIQPFDKSNINAIEKAIQRSDLGLNPNNDGSVIRVNFPP 95 (176)
T ss_pred CCeEEEeCCCcccHHHceeeecCCCCEEEEecCChhhHHHHHHHHHHCCCCCCcccCCCEEEecCCC
Confidence 678888754321001111112122356677777777888888888643 346667777765
Done!