Query 033930
Match_columns 108
No_of_seqs 106 out of 1079
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 13:10:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b34_B Protein (small nuclear 100.0 1.2E-28 4.2E-33 168.9 9.1 98 11-108 17-114 (118)
2 4emg_A Probable U6 snRNA-assoc 99.9 2.5E-25 8.4E-30 147.0 9.4 87 17-106 5-91 (93)
3 4emk_A U6 snRNA-associated SM- 99.9 9.7E-25 3.3E-29 144.7 10.7 78 15-107 14-91 (94)
4 3bw1_A SMX4 protein, U6 snRNA- 99.9 3E-24 1E-28 142.4 10.5 81 18-107 7-87 (96)
5 1i4k_A Putative snRNP SM-like 99.9 3E-24 1E-28 136.5 9.7 72 20-107 3-74 (77)
6 1h64_1 SnRNP SM-like protein; 99.9 3.5E-24 1.2E-28 135.7 9.8 72 20-107 3-74 (75)
7 1mgq_A SM-like protein; LSM, R 99.9 3.8E-24 1.3E-28 138.3 9.7 73 17-105 11-83 (83)
8 1th7_A SnRNP-2, small nuclear 99.9 2.9E-24 9.9E-29 138.1 8.8 75 17-107 5-79 (81)
9 1ljo_A Archaeal SM-like protei 99.9 1.2E-23 4.1E-28 134.0 9.9 73 19-107 3-76 (77)
10 4emk_B U6 snRNA-associated SM- 99.9 3.8E-24 1.3E-28 135.8 7.5 73 19-107 2-74 (75)
11 1i8f_A Putative snRNP SM-like 99.9 1.3E-23 4.3E-28 135.2 9.8 74 17-107 7-80 (81)
12 3s6n_E Small nuclear ribonucle 99.9 4.5E-24 1.6E-28 140.9 7.8 76 17-107 12-91 (92)
13 2fwk_A U6 snRNA-associated SM- 99.9 5.8E-24 2E-28 146.2 6.9 88 16-107 23-113 (121)
14 3s6n_F Small nuclear ribonucle 99.9 3.3E-23 1.1E-27 135.0 10.1 73 19-107 4-76 (86)
15 1n9r_A SMF, small nuclear ribo 99.9 3.7E-23 1.3E-27 136.6 8.2 75 17-107 17-92 (93)
16 4emk_C U6 snRNA-associated SM- 99.9 5.2E-23 1.8E-27 140.3 9.2 94 4-107 7-100 (113)
17 1d3b_B Protein (small nuclear 99.9 4.3E-23 1.5E-27 135.0 7.1 81 20-106 3-83 (91)
18 1d3b_A Protein (small nuclear 99.9 2.8E-22 9.6E-27 127.5 9.8 71 19-105 3-73 (75)
19 3s6n_G Small nuclear ribonucle 99.9 1.3E-22 4.4E-27 129.1 8.1 71 21-107 4-74 (76)
20 4emh_A Probable U6 snRNA-assoc 99.9 7.3E-22 2.5E-26 133.1 8.3 72 20-106 15-86 (105)
21 3pgw_B SM B; protein-RNA compl 99.9 2.5E-21 8.5E-26 145.6 10.6 81 20-106 3-83 (231)
22 1b34_A Protein (small nuclear 99.9 2.4E-21 8.3E-26 132.8 9.0 71 21-107 2-72 (119)
23 2y9a_D Small nuclear ribonucle 99.8 5.4E-20 1.8E-24 127.5 9.0 72 19-106 3-74 (126)
24 1m5q_A SMAP3, small nuclear ri 99.8 3.2E-19 1.1E-23 124.2 8.4 64 24-107 3-66 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.3 3.1E-06 1.1E-10 54.8 7.7 63 19-104 6-69 (86)
26 1u1s_A HFQ protein; SM-like ba 97.5 0.00018 6.3E-09 46.1 4.9 37 25-61 11-47 (82)
27 2ylb_A Protein HFQ; RNA-bindin 97.4 0.00019 6.7E-09 45.1 4.2 38 24-61 12-49 (74)
28 3sb2_A Protein HFQ; SM-like, R 97.3 0.00032 1.1E-08 44.6 4.9 37 24-60 11-47 (79)
29 3ahu_A Protein HFQ; SM-like mo 97.3 0.0004 1.4E-08 44.1 4.7 39 25-63 15-53 (78)
30 2y90_A Protein HFQ; RNA-bindin 97.2 0.00052 1.8E-08 45.7 4.9 40 24-63 12-51 (104)
31 1kq1_A HFQ, HOST factor for Q 97.2 0.00078 2.7E-08 42.6 5.3 39 25-63 11-49 (77)
32 2qtx_A Uncharacterized protein 97.1 0.00059 2E-08 42.6 4.4 39 25-63 17-55 (71)
33 3hfo_A SSR3341 protein; HFQ, S 95.9 0.017 5.9E-07 35.8 5.0 41 21-61 8-49 (70)
34 3hfn_A ASL2047 protein; HFQ, S 95.5 0.036 1.2E-06 34.5 5.4 39 23-61 13-51 (72)
35 1y96_B Gemin7, SIP3, GEM-assoc 93.8 0.51 1.7E-05 30.1 7.8 65 22-107 20-85 (85)
36 1ycy_A Conserved hypothetical 93.1 0.22 7.6E-06 30.4 5.0 41 25-68 10-50 (71)
37 4a53_A EDC3; RNA binding prote 89.2 0.61 2.1E-05 31.7 4.6 39 27-68 8-48 (125)
38 1ib8_A Conserved protein SP14. 84.0 1.2 3.9E-05 31.2 3.9 36 19-56 89-131 (164)
39 2vxe_A CG10686-PA; EDC3, CAR-1 83.7 6.5 0.00022 25.1 9.0 68 32-104 12-80 (88)
40 2fb7_A SM-like protein, LSM-14 81.7 8.2 0.00028 24.9 7.0 72 27-105 15-87 (95)
41 2e12_A SM-like motif, hypothet 81.6 2.3 7.9E-05 27.5 4.3 27 24-50 19-45 (101)
42 3rux_A BIRA bifunctional prote 81.2 2.8 9.7E-05 31.2 5.4 34 31-64 222-255 (270)
43 2vc8_A Enhancer of mRNA-decapp 75.3 5.3 0.00018 25.3 4.5 36 28-65 6-43 (84)
44 2xk0_A Polycomb protein PCL; t 69.5 11 0.00039 22.9 4.9 41 30-70 16-57 (69)
45 2eay_A Biotin [acetyl-COA-carb 62.9 8.5 0.00029 27.8 4.0 31 31-63 186-216 (233)
46 2ej9_A Putative biotin ligase; 58.1 21 0.00072 25.7 5.5 32 31-63 190-221 (237)
47 2dxu_A Biotin--[acetyl-COA-car 55.9 12 0.0004 27.1 3.8 33 28-63 185-217 (235)
48 1bia_A BIRA bifunctional prote 53.4 27 0.00093 26.1 5.6 34 29-63 269-302 (321)
49 4a8c_A Periplasmic PH-dependen 50.7 25 0.00085 27.5 5.1 35 30-64 84-118 (436)
50 1ky9_A Protease DO, DEGP, HTRA 49.9 23 0.00077 27.9 4.8 33 32-64 109-141 (448)
51 4hcz_A PHD finger protein 1; p 49.3 27 0.00092 20.5 3.9 40 31-70 5-47 (58)
52 1x4r_A PARP14 protein; WWE dom 47.6 1.4 4.8E-05 28.7 -2.1 19 47-65 34-52 (99)
53 3bfm_A Biotin protein ligase-l 47.3 37 0.0013 24.2 5.3 29 30-63 191-219 (235)
54 3by7_A Uncharacterized protein 46.4 57 0.0019 21.0 7.6 64 37-105 7-74 (100)
55 3rkx_A Biotin-[acetyl-COA-carb 43.7 33 0.0011 25.9 4.7 32 31-63 277-308 (323)
56 1te0_A Protease DEGS; two doma 43.6 40 0.0014 24.9 5.1 35 30-64 62-96 (318)
57 1nvp_D Transcription initiatio 43.2 26 0.00088 22.9 3.5 27 41-67 52-81 (108)
58 3stj_A Protease DEGQ; serine p 42.6 33 0.0011 26.0 4.5 35 30-64 84-118 (345)
59 1lcy_A HTRA2 serine protease; 41.1 46 0.0016 24.7 5.1 35 30-64 67-101 (325)
60 3lgi_A Protease DEGS; stress-s 40.1 53 0.0018 23.0 5.1 35 30-64 73-107 (237)
61 1nh2_D Transcription initiatio 39.9 30 0.001 23.1 3.5 28 41-68 56-86 (121)
62 1sg5_A ORF, hypothetical prote 39.5 17 0.00059 22.7 2.1 26 24-49 16-41 (86)
63 3fb9_A Uncharacterized protein 37.5 40 0.0014 21.4 3.6 27 25-53 19-49 (90)
64 3pv2_A DEGQ; trypsin fold, PDZ 37.4 33 0.0011 27.0 4.0 35 30-64 98-132 (451)
65 3tjo_A Serine protease HTRA1; 35.9 50 0.0017 23.2 4.4 35 30-64 83-117 (231)
66 3sti_A Protease DEGQ; serine p 34.4 44 0.0015 24.0 4.0 33 32-64 86-118 (245)
67 3qo6_A Protease DO-like 1, chl 32.8 75 0.0026 23.8 5.1 35 30-64 73-107 (348)
68 1y8t_A Hypothetical protein RV 30.6 54 0.0018 24.1 3.9 31 34-64 64-94 (324)
69 3num_A Serine protease HTRA1; 28.1 85 0.0029 23.2 4.7 34 31-64 67-100 (332)
70 2m0o_A PHD finger protein 1; t 23.7 54 0.0018 20.3 2.3 41 29-69 26-69 (79)
71 2qqr_A JMJC domain-containing 23.0 83 0.0028 20.7 3.4 23 32-54 8-30 (118)
72 3mkv_A Putative amidohydrolase 22.7 8.9 0.00031 26.7 -1.6 24 33-56 398-421 (426)
73 2eqj_A Metal-response element- 21.7 1.4E+02 0.0046 17.8 3.8 39 31-69 15-56 (66)
74 3qx1_A FAS-associated factor 1 21.4 68 0.0023 19.0 2.5 23 33-55 7-29 (84)
75 4fln_A Protease DO-like 2, chl 21.4 82 0.0028 25.7 3.7 33 31-63 94-127 (539)
76 3tee_A Flagella basal BODY P-r 20.9 59 0.002 23.3 2.5 20 33-52 171-190 (219)
77 1l1j_A Heat shock protease HTR 20.5 42 0.0014 23.9 1.6 35 30-64 76-110 (239)
No 1
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.95 E-value=1.2e-28 Score=168.90 Aligned_cols=98 Identities=87% Similarity=1.318 Sum_probs=67.0
Q ss_pred hcccccccCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeee
Q 033930 11 VKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFI 90 (108)
Q Consensus 11 ~~~~~~~~~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~l 90 (108)
++.|+..+..+|+++|++++..+++|+|+|++|+.|.|+|+|||+||||+|+||+|++...++.+++.+..+....+|++
T Consensus 17 ~~~e~~~~~~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~l 96 (118)
T 1b34_B 17 QKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYI 96 (118)
T ss_dssp ---------CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEE
T ss_pred hhhhhhhcccChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCc
Confidence 55677889999999999999667999999999999999999999999999999999986543333221111122345789
Q ss_pred ceEEEeCCcEEEEEeCCC
Q 033930 91 SKMFLRGDSVIIVLRNPK 108 (108)
Q Consensus 91 g~i~IRGd~Iv~I~~~~~ 108 (108)
|.+||||+||++|++.|+
T Consensus 97 g~v~IRG~nVv~I~~~~~ 114 (118)
T 1b34_B 97 SKMFLRGDSVIVVLRNPL 114 (118)
T ss_dssp EEEEECGGGEEEEEECCC
T ss_pred CeEEEcCCEEEEEEeCch
Confidence 999999999999999874
No 2
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.92 E-value=2.5e-25 Score=147.00 Aligned_cols=87 Identities=29% Similarity=0.482 Sum_probs=65.4
Q ss_pred ccCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEe
Q 033930 17 EFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 96 (108)
Q Consensus 17 ~~~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IR 96 (108)
.....|+++|+.++ +++|+|+|++|+.|+|+|+|||+||||+|+||+|++..++++++..+ ......++.+|+++||
T Consensus 5 ~~~~~Pl~lL~~~~--~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~-~~~~~~~r~lG~v~iR 81 (93)
T 4emg_A 5 QAVAEPLDLVRLSL--DEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKD-KALKTIRKHYEMLFVR 81 (93)
T ss_dssp ----CTTHHHHTTT--TSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC---------------CEEEEEEEEEEC
T ss_pred cccCCCHHHHHHhC--CCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCcccc-ccccccEeEeceEEEC
Confidence 34579999999999 99999999999999999999999999999999999876444332100 0001245889999999
Q ss_pred CCcEEEEEeC
Q 033930 97 GDSVIIVLRN 106 (108)
Q Consensus 97 Gd~Iv~I~~~ 106 (108)
|+||++|+|.
T Consensus 82 G~nVv~I~p~ 91 (93)
T 4emg_A 82 GDSVILIAPP 91 (93)
T ss_dssp GGGEEEEECC
T ss_pred CCeEEEEEec
Confidence 9999999984
No 3
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.92 E-value=9.7e-25 Score=144.67 Aligned_cols=78 Identities=19% Similarity=0.330 Sum_probs=65.1
Q ss_pred ccccCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEE
Q 033930 15 EEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 94 (108)
Q Consensus 15 ~~~~~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~ 94 (108)
-......|+++|++++ +++|+|.|++|+.|+|+|+|||+||||+|+||+|++.. ++ .++.+|.++
T Consensus 14 ~~~~~~~Pl~lL~~~l--~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~----~~---------~~~~lg~v~ 78 (94)
T 4emk_A 14 PMSMTILPLELIDKCI--GSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTV----TG---------VTEKHSEML 78 (94)
T ss_dssp ------CHHHHHHHTT--TSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETT----TC---------CEEEEEEEE
T ss_pred CccccccCHHHHHHHc--CCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecC----CC---------cEeEcCEEE
Confidence 3467789999999999 99999999999999999999999999999999999721 11 236799999
Q ss_pred EeCCcEEEEEeCC
Q 033930 95 LRGDSVIIVLRNP 107 (108)
Q Consensus 95 IRGd~Iv~I~~~~ 107 (108)
|||+||++|+|..
T Consensus 79 IRG~nI~~i~p~~ 91 (94)
T 4emk_A 79 LNGNGMCMLIPGG 91 (94)
T ss_dssp ECSTTEEEEEECC
T ss_pred EcCCEEEEEEeCC
Confidence 9999999999874
No 4
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3e-24 Score=142.35 Aligned_cols=81 Identities=30% Similarity=0.561 Sum_probs=69.7
Q ss_pred cCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeC
Q 033930 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 97 (108)
Q Consensus 18 ~~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRG 97 (108)
....|+.+|.+++ +++|+|.|+|||.|.|+|+|||+||||+|+||+|++...++.+. ....+.+|.++|||
T Consensus 7 ~~~~p~~~L~~~i--~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~-------~~~~r~lG~v~IRG 77 (96)
T 3bw1_A 7 HMETPLDLLKLNL--DERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEEL-------SESERRCEMVFIRG 77 (96)
T ss_dssp CCCCHHHHHGGGT--TSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCC-------CEEEEEEEEEEECG
T ss_pred hhhhHHHHHHHHC--CCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEecccccccc-------CcceeEcCEEEECC
Confidence 4578999999999 99999999999999999999999999999999999875332110 02357899999999
Q ss_pred CcEEEEEeCC
Q 033930 98 DSVIIVLRNP 107 (108)
Q Consensus 98 d~Iv~I~~~~ 107 (108)
+||++|++.+
T Consensus 78 ~nVv~I~~~d 87 (96)
T 3bw1_A 78 DTVTLISTPS 87 (96)
T ss_dssp GGEEEEECCC
T ss_pred CEEEEEEecC
Confidence 9999999875
No 5
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.91 E-value=3e-24 Score=136.50 Aligned_cols=72 Identities=28% Similarity=0.522 Sum_probs=65.5
Q ss_pred CCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCCc
Q 033930 20 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 99 (108)
Q Consensus 20 ~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd~ 99 (108)
..|+++|.+++ +++|+|+|+||+.|+|+|+|||+|||++|+||+|++.. ...+++|.++|||++
T Consensus 3 ~~P~~~L~~~~--~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~--------------~~~~~lg~v~iRG~~ 66 (77)
T 1i4k_A 3 PRPLDVLNRSL--KSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNG--------------EVVRKVGSVVIRGDT 66 (77)
T ss_dssp CCHHHHHHTTT--TSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETT--------------EEEEEEEEEEECGGG
T ss_pred ccHHHHHHHhC--CCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecC--------------CcEeECCEEEECCCE
Confidence 58999999999 99999999999999999999999999999999998742 134779999999999
Q ss_pred EEEEEeCC
Q 033930 100 VIIVLRNP 107 (108)
Q Consensus 100 Iv~I~~~~ 107 (108)
|++|++.+
T Consensus 67 I~~i~~~d 74 (77)
T 1i4k_A 67 VVFVSPAP 74 (77)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99999864
No 6
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.91 E-value=3.5e-24 Score=135.73 Aligned_cols=72 Identities=25% Similarity=0.424 Sum_probs=64.9
Q ss_pred CCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCCc
Q 033930 20 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 99 (108)
Q Consensus 20 ~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd~ 99 (108)
..|+++|.+++ +++|+|+|+||+.|+|+|+|||+|||++|+||+|++.. ...+.+|.++|||++
T Consensus 3 ~~P~~~L~~~~--~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~--------------~~~~~lg~v~iRG~~ 66 (75)
T 1h64_1 3 ERPLDVIHRSL--DKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG--------------EVVKRYGKIVIRGDN 66 (75)
T ss_dssp CCHHHHHHTTT--TSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETT--------------EEEEEEEEEEECGGG
T ss_pred chHHHHHHHHC--CCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeC--------------CceeECCEEEECCCE
Confidence 58999999999 99999999999999999999999999999999998642 134789999999999
Q ss_pred EEEEEeCC
Q 033930 100 VIIVLRNP 107 (108)
Q Consensus 100 Iv~I~~~~ 107 (108)
|++|++..
T Consensus 67 I~~i~~~~ 74 (75)
T 1h64_1 67 VLAISPTE 74 (75)
T ss_dssp EEEEEEC-
T ss_pred EEEEEeCC
Confidence 99999864
No 7
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.91 E-value=3.8e-24 Score=138.30 Aligned_cols=73 Identities=26% Similarity=0.487 Sum_probs=65.8
Q ss_pred ccCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEe
Q 033930 17 EFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 96 (108)
Q Consensus 17 ~~~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IR 96 (108)
.....|+++|.+++ +++|+|+|+||+.++|+|+|||+|||++|+||+|++.. ...+.+|.++||
T Consensus 11 ~~~~~P~~~L~~~~--~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~--------------~~~~~lg~v~IR 74 (83)
T 1mgq_A 11 VNVQRPLDALGNSL--NSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDG--------------EVTRRLGTVLIR 74 (83)
T ss_dssp CCTTCTTHHHHHTT--TSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETT--------------EEEEEEEEEEEC
T ss_pred ccCcChHHHHHHhC--CCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecC--------------CcccCCCEEEEC
Confidence 34679999999999 99999999999999999999999999999999998642 134789999999
Q ss_pred CCcEEEEEe
Q 033930 97 GDSVIIVLR 105 (108)
Q Consensus 97 Gd~Iv~I~~ 105 (108)
|++|++|+|
T Consensus 75 G~~I~~i~p 83 (83)
T 1mgq_A 75 GDNIVYISP 83 (83)
T ss_dssp GGGEEEEEC
T ss_pred CCEEEEEEC
Confidence 999999986
No 8
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.91 E-value=2.9e-24 Score=138.09 Aligned_cols=75 Identities=28% Similarity=0.493 Sum_probs=66.4
Q ss_pred ccCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEe
Q 033930 17 EFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 96 (108)
Q Consensus 17 ~~~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IR 96 (108)
.....|+++|.+++ +++|+|+|+||+.+.|+|+|||+||||+|+||+|++.. + ..+.+|.++||
T Consensus 5 ~~~~~P~~~L~~~~--~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-----~---------~~~~lg~v~iR 68 (81)
T 1th7_A 5 FLAETAHKVLAESL--NNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD-----G---------SGKKLGTIVIR 68 (81)
T ss_dssp TTCHHHHHHHHHHT--TSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSS-----S---------CEEEEEEEEEC
T ss_pred ccccchHHHHHHhC--CCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecC-----C---------ceeECCEEEEC
Confidence 34568999999999 99999999999999999999999999999999998642 1 23779999999
Q ss_pred CCcEEEEEeCC
Q 033930 97 GDSVIIVLRNP 107 (108)
Q Consensus 97 Gd~Iv~I~~~~ 107 (108)
|++|++|.+..
T Consensus 69 G~~I~~i~~~~ 79 (81)
T 1th7_A 69 GDNVILISPLQ 79 (81)
T ss_dssp GGGEEEEEEC-
T ss_pred CCEEEEEEecC
Confidence 99999999864
No 9
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.90 E-value=1.2e-23 Score=133.96 Aligned_cols=73 Identities=22% Similarity=0.372 Sum_probs=65.1
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCC-eEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeC
Q 033930 19 NTGPLSVLMMSVKNNTQVLINCRNN-KKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 97 (108)
Q Consensus 19 ~~~Pl~~L~~~~~~~krV~V~l~~g-r~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRG 97 (108)
...|+++|.+++ +++|+|.|++| +.++|+|+|||+||||+|+||+|++.. + ..+.+|.++|||
T Consensus 3 m~~P~~~L~~~~--~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~-----~---------~~~~lg~v~iRG 66 (77)
T 1ljo_A 3 MVLPNQMVKSMV--GKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGE-----E---------KVRSLGEIVLRG 66 (77)
T ss_dssp CCCHHHHHHHTT--TSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETT-----E---------EEEEEEEEEECG
T ss_pred ccchHHHHHHHC--CCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecC-----C---------cEeECCeEEEeC
Confidence 358999999999 99999999999 999999999999999999999998632 1 347899999999
Q ss_pred CcEEEEEeCC
Q 033930 98 DSVIIVLRNP 107 (108)
Q Consensus 98 d~Iv~I~~~~ 107 (108)
+||++|++..
T Consensus 67 ~nI~~i~~~d 76 (77)
T 1ljo_A 67 NNVVLIQPQE 76 (77)
T ss_dssp GGEEEEEEC-
T ss_pred CeEEEEEeCC
Confidence 9999999753
No 10
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.90 E-value=3.8e-24 Score=135.84 Aligned_cols=73 Identities=25% Similarity=0.362 Sum_probs=64.8
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCC
Q 033930 19 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 98 (108)
Q Consensus 19 ~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd 98 (108)
+..|+++|++++ +++|+|+|+||+.|+|+|.|||+||||+|+||+|++.. + ..+.+|.++|||+
T Consensus 2 ~~~P~~~L~~~~--~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-----~---------~~~~lg~v~iRG~ 65 (75)
T 4emk_B 2 DSSPNEFLNKVI--GKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNG-----K---------KTNVYGDAFIRGN 65 (75)
T ss_dssp CSHHHHHHHHTT--TSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETT-----E---------EEEEEEEEEEEGG
T ss_pred CCchHHHHHHhC--CCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecC-----C---------cccEecEEEEcCC
Confidence 357999999999 99999999999999999999999999999999998531 1 2367999999999
Q ss_pred cEEEEEeCC
Q 033930 99 SVIIVLRNP 107 (108)
Q Consensus 99 ~Iv~I~~~~ 107 (108)
+|++|++..
T Consensus 66 ~I~~i~~~~ 74 (75)
T 4emk_B 66 NVLYVSALD 74 (75)
T ss_dssp GSSEEEEC-
T ss_pred eEEEEEecC
Confidence 999999864
No 11
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.90 E-value=1.3e-23 Score=135.20 Aligned_cols=74 Identities=27% Similarity=0.457 Sum_probs=64.9
Q ss_pred ccCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEe
Q 033930 17 EFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 96 (108)
Q Consensus 17 ~~~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IR 96 (108)
.....|+++|.+++ +++|+|+|+||+.|.|+|+|||+||||+|+||+|+ .. + ..+.+|.++||
T Consensus 7 ~~~~~P~~~L~~~~--~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~~-----~---------~~~~lg~v~iR 69 (81)
T 1i8f_A 7 KCFATLGATLQDSI--GKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-ID-----G---------NVYKRGTMVVR 69 (81)
T ss_dssp ---CCHHHHHHTTT--TSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-ET-----T---------EEEEEEEEEEC
T ss_pred ccccchHHHHHHHC--CCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-cC-----C---------cccCCCEEEEC
Confidence 34679999999999 99999999999999999999999999999999998 21 1 33789999999
Q ss_pred CCcEEEEEeCC
Q 033930 97 GDSVIIVLRNP 107 (108)
Q Consensus 97 Gd~Iv~I~~~~ 107 (108)
|++|++|++..
T Consensus 70 G~~I~~i~~~d 80 (81)
T 1i8f_A 70 GENVLFISPVP 80 (81)
T ss_dssp GGGEEEEEECC
T ss_pred CCEEEEEEeCC
Confidence 99999999864
No 12
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.90 E-value=4.5e-24 Score=140.87 Aligned_cols=76 Identities=18% Similarity=0.434 Sum_probs=64.5
Q ss_pred ccCCCcHHHHHhhhhCCcEEEEEe----cCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeece
Q 033930 17 EFNTGPLSVLMMSVKNNTQVLINC----RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92 (108)
Q Consensus 17 ~~~~~Pl~~L~~~~~~~krV~V~l----~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~ 92 (108)
.....|+++|++++ +++|+|.+ ++|++|+|+|+|||+||||+|+||+|++.. ++ .++.+|.
T Consensus 12 ~~m~~Pl~lL~~~l--~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~----~~---------~~~~lg~ 76 (92)
T 3s6n_E 12 KVMVQPINLIFRYL--QNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSK----TK---------SRKQLGR 76 (92)
T ss_dssp --CCCHHHHHHHHH--HHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSS----SC---------CEEEEEE
T ss_pred eeccCCHHHHHHHh--CCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecC----CC---------ceeEcCe
Confidence 46789999999999 77777776 999999999999999999999999998642 11 2467999
Q ss_pred EEEeCCcEEEEEeCC
Q 033930 93 MFLRGDSVIIVLRNP 107 (108)
Q Consensus 93 i~IRGd~Iv~I~~~~ 107 (108)
++|||+||++|++.+
T Consensus 77 v~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 77 IMLKGDNITLLQSVS 91 (92)
T ss_dssp EEECGGGEEEEEEC-
T ss_pred EEEeCCEEEEEEeCC
Confidence 999999999999976
No 13
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.90 E-value=5.8e-24 Score=146.22 Aligned_cols=88 Identities=20% Similarity=0.315 Sum_probs=68.2
Q ss_pred cccCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCC---CCccccccCcceeeece
Q 033930 16 EEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTG---KGKKKALPVNKDRFISK 92 (108)
Q Consensus 16 ~~~~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~---k~~~~~~~~~~~r~lg~ 92 (108)
+....+|+++|.+++ +++|+|.|++||.|.|+|+|||+||||+|+||+|++....... ++.... ....+.+|+
T Consensus 23 ~~~~~~Pl~lL~~~l--~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~--~~~~r~lG~ 98 (121)
T 2fwk_A 23 GGNIILPLALIDKCI--GNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLK--RVMVNRLET 98 (121)
T ss_dssp -CCCCCHHHHHHHTB--TSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC-----------------CEECCCCSE
T ss_pred cccccCcHHHHHHHc--CCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccc--cccceEcce
Confidence 346689999999999 9999999999999999999999999999999999985421100 010000 012578999
Q ss_pred EEEeCCcEEEEEeCC
Q 033930 93 MFLRGDSVIIVLRNP 107 (108)
Q Consensus 93 i~IRGd~Iv~I~~~~ 107 (108)
++|||++|++|++.+
T Consensus 99 v~IRG~nVv~I~~~~ 113 (121)
T 2fwk_A 99 ILLSGNNVAMLVPGG 113 (121)
T ss_dssp EEECGGGEEEEESSS
T ss_pred EEECCCEEEEEEecC
Confidence 999999999999875
No 14
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.90 E-value=3.3e-23 Score=134.99 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=65.2
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCC
Q 033930 19 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 98 (108)
Q Consensus 19 ~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd 98 (108)
...|+++|++++ +++|+|+|++|+.|+|+|.|||+||||+|+||+|+.. ++ ..+.+|.++|||+
T Consensus 4 ~~~P~~~L~~~~--~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~-----g~---------~~~~lg~v~IRG~ 67 (86)
T 3s6n_F 4 PLNPKPFLNGLT--GKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYID-----GA---------LSGHLGEVLIRCN 67 (86)
T ss_dssp CCCHHHHHHHHT--TSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEET-----TE---------EEEEESSEEECGG
T ss_pred CcCcHHHHHHhC--CCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcC-----Cc---------eeeEccEEEEeCC
Confidence 468999999999 9999999999999999999999999999999999752 11 2367999999999
Q ss_pred cEEEEEeCC
Q 033930 99 SVIIVLRNP 107 (108)
Q Consensus 99 ~Iv~I~~~~ 107 (108)
||++|++.+
T Consensus 68 nI~~i~~~d 76 (86)
T 3s6n_F 68 NVLYIRGVE 76 (86)
T ss_dssp GEEEEEECC
T ss_pred eEEEEEeCC
Confidence 999999864
No 15
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.89 E-value=3.7e-23 Score=136.62 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=59.8
Q ss_pred ccCCCcHHHHHhhhhCCcEEEEEecCC-eEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEE
Q 033930 17 EFNTGPLSVLMMSVKNNTQVLINCRNN-KKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95 (108)
Q Consensus 17 ~~~~~Pl~~L~~~~~~~krV~V~l~~g-r~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~I 95 (108)
.....|+++|.+++ +++|+|+|++| +.|+|+|+|||+||||+|+||+|++.. + ..+.+|.++|
T Consensus 17 ~~~~~P~~~L~~~i--~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~-----~---------~~~~lg~v~I 80 (93)
T 1n9r_A 17 MQPVNPKPFLKGLV--NHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAG-----V---------SHGTLGEIFI 80 (93)
T ss_dssp ---------CGGGT--TSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETT-----E---------EEEECCSEEE
T ss_pred cccCChHHHHHHhC--CCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCC-----C---------eEeEcCEEEE
Confidence 34578999999999 99999999999 999999999999999999999998621 1 2367999999
Q ss_pred eCCcEEEEEeCC
Q 033930 96 RGDSVIIVLRNP 107 (108)
Q Consensus 96 RGd~Iv~I~~~~ 107 (108)
||++|++|.+.+
T Consensus 81 RG~nI~~I~~~~ 92 (93)
T 1n9r_A 81 RCNNVLYIRELP 92 (93)
T ss_dssp CGGGEEEEEECC
T ss_pred cCCeEEEEEeCC
Confidence 999999999865
No 16
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.89 E-value=5.2e-23 Score=140.26 Aligned_cols=94 Identities=16% Similarity=0.262 Sum_probs=56.1
Q ss_pred CCChhhhhcccccccCCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCcccccc
Q 033930 4 RPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALP 83 (108)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~ 83 (108)
||-.+...+..+ .....|+..|.+++ +++|+|.|+|||.|.|+|+|||+||||+|+||+|++.... +. ..
T Consensus 7 ~~~~~~~~~~~~-~~kke~i~~L~~~l--~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~--~~-----~~ 76 (113)
T 4emk_C 7 RPGPGNSSQPTE-RPRKESILDLSRYQ--DQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPE--DG-----KL 76 (113)
T ss_dssp --------------------------C--CSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------------
T ss_pred CCCCCCCCCCcc-CCccchHHHHHHHc--CCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCC--Cc-----cc
Confidence 566666655443 55567888899999 9999999999999999999999999999999999975411 10 00
Q ss_pred CcceeeeceEEEeCCcEEEEEeCC
Q 033930 84 VNKDRFISKMFLRGDSVIIVLRNP 107 (108)
Q Consensus 84 ~~~~r~lg~i~IRGd~Iv~I~~~~ 107 (108)
....+.+|.++|||+||++|++..
T Consensus 77 ~~~~r~lG~v~IRG~nIv~I~~~d 100 (113)
T 4emk_C 77 TGAIRKLGLVVVRGTTLVLIAPMD 100 (113)
T ss_dssp -CCEEEEEEEEECTTTEEEEEECC
T ss_pred ccceeEccEEEECCCeEEEEEecC
Confidence 124588999999999999999853
No 17
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.88 E-value=4.3e-23 Score=134.98 Aligned_cols=81 Identities=21% Similarity=0.429 Sum_probs=63.1
Q ss_pred CCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCCc
Q 033930 20 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 99 (108)
Q Consensus 20 ~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd~ 99 (108)
.+|-+.|.+++ +++|+|.|+|||.|.|+|+|||+||||+|+||+|++...+.+++. + .....+.+|.++|||++
T Consensus 3 ~~~~~~L~~~~--~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~-~---~~~~~~~lg~v~iRG~~ 76 (91)
T 1d3b_B 3 VGKSSKMLQHI--DYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ-A---EREEKRVLGLVLLRGEN 76 (91)
T ss_dssp ----CCCGGGT--TSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTS-C---CEEEEEEEEEEEECGGG
T ss_pred CChhHHHHHHc--CCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeecccccccc-c---cCccEeECCEEEECCCe
Confidence 35777899999 999999999999999999999999999999999987442221110 0 01245889999999999
Q ss_pred EEEEEeC
Q 033930 100 VIIVLRN 106 (108)
Q Consensus 100 Iv~I~~~ 106 (108)
|++|++.
T Consensus 77 I~~i~~~ 83 (91)
T 1d3b_B 77 LVSMTVE 83 (91)
T ss_dssp EEEEEEE
T ss_pred EEEEEcC
Confidence 9999874
No 18
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.88 E-value=2.8e-22 Score=127.45 Aligned_cols=71 Identities=14% Similarity=0.276 Sum_probs=63.1
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCC
Q 033930 19 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 98 (108)
Q Consensus 19 ~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd 98 (108)
...|+++|++++ +++|.|.|++|++|+|+|.|||.|||++|+||+|+... + ..+.+|.++|||+
T Consensus 3 ~~~P~~~L~~~~--g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~----~----------~~~~lg~v~IRG~ 66 (75)
T 1d3b_A 3 IGVPIKVLHEAE--GHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRD----G----------RVAQLEQVYIRGC 66 (75)
T ss_dssp -CCHHHHHHHTT--TSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTT----S----------CEEEEEEEEECGG
T ss_pred ccCHHHHHHHhC--CCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCC----C----------cEEEcCeEEEeCC
Confidence 457999999999 99999999999999999999999999999999998421 1 1367999999999
Q ss_pred cEEEEEe
Q 033930 99 SVIIVLR 105 (108)
Q Consensus 99 ~Iv~I~~ 105 (108)
+|.+|+.
T Consensus 67 nI~~i~l 73 (75)
T 1d3b_A 67 KIRFLIL 73 (75)
T ss_dssp GEEEEEE
T ss_pred EEEEEEc
Confidence 9999986
No 19
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.88 E-value=1.3e-22 Score=129.14 Aligned_cols=71 Identities=23% Similarity=0.387 Sum_probs=52.3
Q ss_pred CcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCCcE
Q 033930 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 100 (108)
Q Consensus 21 ~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd~I 100 (108)
.|-++|.+++ +++|+|.|+||+.|+|+|.|||+||||+|+||+|++.. + ..+.+|.++|||++|
T Consensus 4 ~~~~~L~~~~--~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~----~----------~~~~lg~v~iRG~~I 67 (76)
T 3s6n_G 4 AHPPELKKFM--DKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATS----G----------QQNNIGMVVIRGNSI 67 (76)
T ss_dssp ------------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC------------------CBSSEEECSSSE
T ss_pred cchHHHHHhC--CCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccC----C----------cEeEcCEEEECCCeE
Confidence 3567899999 99999999999999999999999999999999998642 1 236799999999999
Q ss_pred EEEEeCC
Q 033930 101 IIVLRNP 107 (108)
Q Consensus 101 v~I~~~~ 107 (108)
++|++..
T Consensus 68 ~~i~~~d 74 (76)
T 3s6n_G 68 IMLEALE 74 (76)
T ss_dssp EEEEC--
T ss_pred EEEEecc
Confidence 9999863
No 20
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.86 E-value=7.3e-22 Score=133.10 Aligned_cols=72 Identities=19% Similarity=0.353 Sum_probs=53.5
Q ss_pred CCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCCc
Q 033930 20 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 99 (108)
Q Consensus 20 ~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd~ 99 (108)
-.|+.+|.+++ +++|+|+|++|+.|+|+|.|||+||||+|+||+|++.. ++ ..+.+|.++|||++
T Consensus 15 ~~p~~lL~~~i--gk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~d----g~---------~~~~lg~v~IRG~n 79 (105)
T 4emh_A 15 MLPLTLLNATQ--GRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPD----GD---------KFFRLPECYIRGNN 79 (105)
T ss_dssp -------------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTT----SC---------EEEEEEEEEECGGG
T ss_pred CcHHHHHHHhC--CCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccC----Cc---------eeeEcCeEEEeCCe
Confidence 47899999999 99999999999999999999999999999999998532 21 23679999999999
Q ss_pred EEEEEeC
Q 033930 100 VIIVLRN 106 (108)
Q Consensus 100 Iv~I~~~ 106 (108)
|++|++.
T Consensus 80 I~~I~~p 86 (105)
T 4emh_A 80 IKYLRIQ 86 (105)
T ss_dssp EEEEEC-
T ss_pred EEEEecC
Confidence 9999874
No 21
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.86 E-value=2.5e-21 Score=145.57 Aligned_cols=81 Identities=21% Similarity=0.429 Sum_probs=66.5
Q ss_pred CCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCCc
Q 033930 20 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 99 (108)
Q Consensus 20 ~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd~ 99 (108)
.++-..|.+++ +++|+|+|+|||+|+|+|+|||+||||||+||+|++....++++.. ....+|++|++||||+|
T Consensus 3 v~k~~kL~klI--dKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~----~~~~~R~LGlV~IRGdn 76 (231)
T 3pgw_B 3 VGKSSKMLQHI--DYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA----EREEKRVLGLVLLRGEN 76 (231)
T ss_pred cCchHHHHHhc--CCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccc----cccceeEeceEEECCCc
Confidence 46777899999 9999999999999999999999999999999999975333322210 11256899999999999
Q ss_pred EEEEEeC
Q 033930 100 VIIVLRN 106 (108)
Q Consensus 100 Iv~I~~~ 106 (108)
|++|+..
T Consensus 77 IV~Isve 83 (231)
T 3pgw_B 77 LVSMTVE 83 (231)
T ss_pred EEEEEec
Confidence 9999853
No 22
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.85 E-value=2.4e-21 Score=132.84 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=63.2
Q ss_pred CcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCCcE
Q 033930 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 100 (108)
Q Consensus 21 ~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd~I 100 (108)
.|+++|.+++ +++|.|+|++|++|.|+|.+||+||||+|+||+|+... + ..+++|.+||||+||
T Consensus 2 ~p~~~L~~~~--gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~----~----------~~~~lg~v~IRG~nI 65 (119)
T 1b34_A 2 KLVRFLMKLS--HETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKN----R----------EPVQLETLSIRGNNI 65 (119)
T ss_dssp CHHHHHHTCT--TCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTT----S----------CCEEEEEEEECGGGE
T ss_pred ChHHHHHHhC--CCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCC----C----------ceeEcceEEEcCCeE
Confidence 6999999999 99999999999999999999999999999999998421 1 126799999999999
Q ss_pred EEEEeCC
Q 033930 101 IIVLRNP 107 (108)
Q Consensus 101 v~I~~~~ 107 (108)
++|++..
T Consensus 66 ~~I~~pd 72 (119)
T 1b34_A 66 RYFILPD 72 (119)
T ss_dssp EEEECCT
T ss_pred EEEEecc
Confidence 9998753
No 23
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.82 E-value=5.4e-20 Score=127.50 Aligned_cols=72 Identities=14% Similarity=0.285 Sum_probs=63.2
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCC
Q 033930 19 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 98 (108)
Q Consensus 19 ~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd 98 (108)
...|+++|++++ +++|+|.|++|++|+|+|.+||.||||+|+||+|+... ++ ...++.+||||+
T Consensus 3 ~~~P~~~L~~~~--gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~----g~----------~~~l~~v~IRGn 66 (126)
T 2y9a_D 3 IGVPIKVLHEAE--GHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRD----GR----------VAQLEQVYIRGS 66 (126)
T ss_dssp -CCSHHHHHSCS--SCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTT----SC----------CEEEEEEEECGG
T ss_pred cccHHHHHHHhC--CCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCC----Cc----------EeecccEEEeCC
Confidence 468999999999 99999999999999999999999999999999997421 11 257999999999
Q ss_pred cEEEEEeC
Q 033930 99 SVIIVLRN 106 (108)
Q Consensus 99 ~Iv~I~~~ 106 (108)
+|++|+..
T Consensus 67 nI~~I~lp 74 (126)
T 2y9a_D 67 KIRFLILP 74 (126)
T ss_dssp GEEEEECC
T ss_pred EEEEEEcc
Confidence 99999853
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.79 E-value=3.2e-19 Score=124.15 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=57.9
Q ss_pred HHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCCcEEEE
Q 033930 24 SVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103 (108)
Q Consensus 24 ~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd~Iv~I 103 (108)
++|.+++ +++|.|+|++|+.|+|+|.|||+||||+|+||+|+. + +.+|.++|||+||++|
T Consensus 3 ~~L~~~i--gk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~------~------------~~lg~v~IRG~nI~~I 62 (130)
T 1m5q_A 3 AELNNLL--GREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA------G------------EKFNRVFIMYRYIVHI 62 (130)
T ss_dssp HHHHHTT--TSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT------C------------CEEEEEEECGGGEEEE
T ss_pred hHHHHhC--CCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc------C------------CEeceEEEeCCeEEEE
Confidence 5789999 999999999999999999999999999999999861 0 3589999999999999
Q ss_pred EeCC
Q 033930 104 LRNP 107 (108)
Q Consensus 104 ~~~~ 107 (108)
++..
T Consensus 63 ~~~d 66 (130)
T 1m5q_A 63 DSTE 66 (130)
T ss_dssp EECC
T ss_pred EcCC
Confidence 8764
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.31 E-value=3.1e-06 Score=54.80 Aligned_cols=63 Identities=25% Similarity=0.276 Sum_probs=50.9
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEec-CccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeC
Q 033930 19 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFD-RHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 97 (108)
Q Consensus 19 ~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD-~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRG 97 (108)
...|+. |..++ +|.|.|.|.||+.|+|.|.+|| ...|++|.||- . + .....++|-|
T Consensus 6 ~~~p~e-l~~li--~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~~----~----~------------~~~~~~iI~G 62 (86)
T 1y96_A 6 KKGPLE-WQDYI--YKEVRVTASEKNEYKGWVLTTDPVSANIVLVNFL----E----D------------GSMSVTGIMG 62 (86)
T ss_dssp HSCHHH-HHHTT--TCEEEEEETTTEEEEEEEEEECTTTCCEEEEEEC----T----T------------SCEEEEEECG
T ss_pred hCCHHH-HHhhc--CCEEEEEEcCCCEEEEEEEEECCCceEEEEeecc----c----C------------CeEEEEEEec
Confidence 346774 47888 9999999999999999999999 99999999981 1 1 1256788889
Q ss_pred CcEEEEE
Q 033930 98 DSVIIVL 104 (108)
Q Consensus 98 d~Iv~I~ 104 (108)
..|.-|-
T Consensus 63 ~aI~eI~ 69 (86)
T 1y96_A 63 HAVQTVE 69 (86)
T ss_dssp GGEEEEE
T ss_pred ceEEEEE
Confidence 8887664
No 26
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=97.47 E-value=0.00018 Score=46.05 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=33.2
Q ss_pred HHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEe
Q 033930 25 VLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 61 (108)
Q Consensus 25 ~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL 61 (108)
+|..+.+++.+|+|.|.+|-.++|.+.+||+|+=|+-
T Consensus 11 fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~ 47 (82)
T 1u1s_A 11 YLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLK 47 (82)
T ss_dssp HHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEEEEe
Confidence 6777888899999999999999999999999986654
No 27
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=97.38 E-value=0.00019 Score=45.06 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=33.8
Q ss_pred HHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEe
Q 033930 24 SVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 61 (108)
Q Consensus 24 ~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL 61 (108)
.+|..+.+++.+|.|.|.+|-.++|.+.+||+|+=++-
T Consensus 12 ~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL~ 49 (74)
T 2ylb_A 12 PFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK 49 (74)
T ss_dssp HHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE
Confidence 37888888899999999999999999999999986554
No 28
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=97.34 E-value=0.00032 Score=44.60 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=33.3
Q ss_pred HHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceE
Q 033930 24 SVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60 (108)
Q Consensus 24 ~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlv 60 (108)
.+|..+.+++.+|.|.|.+|-.++|.+.+||+|+=++
T Consensus 11 ~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL 47 (79)
T 3sb2_A 11 PFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL 47 (79)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE
Confidence 3678888889999999999999999999999998655
No 29
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=97.28 E-value=0.0004 Score=44.09 Aligned_cols=39 Identities=28% Similarity=0.302 Sum_probs=33.9
Q ss_pred HHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeec
Q 033930 25 VLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 63 (108)
Q Consensus 25 ~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d 63 (108)
+|..+.+++.+|+|.|.+|-.++|.+.+||+|+=|+-.+
T Consensus 15 fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~~~ 53 (78)
T 3ahu_A 15 FLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLESE 53 (78)
T ss_dssp HHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEESS
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEEEC
Confidence 677777789999999999999999999999998666433
No 30
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=97.20 E-value=0.00052 Score=45.73 Aligned_cols=40 Identities=23% Similarity=0.303 Sum_probs=35.0
Q ss_pred HHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeec
Q 033930 24 SVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 63 (108)
Q Consensus 24 ~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d 63 (108)
.+|..+.+++.+|.|.|.+|-.++|.+.+||+|+=|+-++
T Consensus 12 ~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~~~ 51 (104)
T 2y90_A 12 PFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNT 51 (104)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEESS
T ss_pred HHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEECC
Confidence 3788888889999999999999999999999998666543
No 31
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=97.18 E-value=0.00078 Score=42.60 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=34.4
Q ss_pred HHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeec
Q 033930 25 VLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 63 (108)
Q Consensus 25 ~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d 63 (108)
+|..+.+++.+|.|.|.+|-.++|.+.+||+|+=++-++
T Consensus 11 fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~~ 49 (77)
T 1kq1_A 11 ALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQ 49 (77)
T ss_dssp HHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEET
T ss_pred HHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEEEC
Confidence 677788889999999999999999999999998766544
No 32
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=97.14 E-value=0.00059 Score=42.58 Aligned_cols=39 Identities=23% Similarity=0.076 Sum_probs=33.2
Q ss_pred HHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeec
Q 033930 25 VLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 63 (108)
Q Consensus 25 ~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d 63 (108)
+|....+++.+|+|.|.+|-.++|.+.|||+|+=++-.+
T Consensus 17 fLn~~r~~~~~Vtv~L~NG~~l~G~I~~fD~ftVll~~~ 55 (71)
T 2qtx_A 17 FEYARRLNGKKVKIFLRNGEVLDAEVTGVSNYEIMVKVG 55 (71)
T ss_dssp CCGGGGGTTCEEEEEETTSCEEEEEEEEECSSEEEEEET
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEEeC
Confidence 455667789999999999999999999999999766444
No 33
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=95.85 E-value=0.017 Score=35.75 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=36.7
Q ss_pred Cc-HHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEe
Q 033930 21 GP-LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 61 (108)
Q Consensus 21 ~P-l~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL 61 (108)
.| ...|..++++...|.|.|-+|..++|.+.-||.|+=++-
T Consensus 8 lPsvR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L~ 49 (70)
T 3hfo_A 8 LPSVRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGLV 49 (70)
T ss_dssp CHHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred CCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEEE
Confidence 45 778999999999999999999999999999999875554
No 34
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=95.49 E-value=0.036 Score=34.50 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=35.5
Q ss_pred HHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEe
Q 033930 23 LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 61 (108)
Q Consensus 23 l~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL 61 (108)
...|..++++...|.|.|.+|..++|.+.-+|.|+=++.
T Consensus 13 vR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L~ 51 (72)
T 3hfn_A 13 IRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCIA 51 (72)
T ss_dssp HHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEEE
Confidence 678999999999999999999999999999999875554
No 35
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=93.76 E-value=0.51 Score=30.13 Aligned_cols=65 Identities=20% Similarity=0.287 Sum_probs=47.0
Q ss_pred cHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCcc-ceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCCcE
Q 033930 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC-NMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 100 (108)
Q Consensus 22 Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hm-NlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd~I 100 (108)
=|.+|.... +++|.+.|.++-.+.|.+.|+|... |+..++ . .. +. -.++..++|+..|
T Consensus 20 fLr~l~~m~--~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~---L-~T------------Pi---Gv~~eAlLR~~Di 78 (85)
T 1y96_B 20 YLRSLLAMV--GHQVSFTLHEGVRVAAHFGATDLDVANFYVSQ---L-QT------------PI---GVQAEALLRCSDI 78 (85)
T ss_dssp HHHHHHHHT--TSEEEEEEGGGCEEEEEEEEECTTCCEEEEEE---E-CC------------TT---CCEEEEEEEGGGE
T ss_pred HHHHHHHhC--CCceEEEEeCCeEEEEEEEecCcccceeEhhh---c-CC------------Cc---ccchhhhhhcCCE
Confidence 344555555 9999999999999999999999754 444333 1 11 00 1267899999999
Q ss_pred EEEEeCC
Q 033930 101 IIVLRNP 107 (108)
Q Consensus 101 v~I~~~~ 107 (108)
++++..+
T Consensus 79 i~~sF~~ 85 (85)
T 1y96_B 79 ISYTFKP 85 (85)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9998753
No 36
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=93.12 E-value=0.22 Score=30.37 Aligned_cols=41 Identities=20% Similarity=0.377 Sum_probs=32.0
Q ss_pred HHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEe
Q 033930 25 VLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 68 (108)
Q Consensus 25 ~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~ 68 (108)
.|.++. ++||-+..-+...|+|+|.-||+-. +.|+|++.+.
T Consensus 10 tL~~WK--g~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~ 50 (71)
T 1ycy_A 10 VLKEWK--GHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVI 50 (71)
T ss_dssp HHHHHT--TSEEEEEEC----CEEEEEEECSSE-EEEEEEEETT
T ss_pred HHHHhC--CcEEEEEecCcceeeeehhhcCcce-eehhhHHHHh
Confidence 577777 9999999999999999999999976 6788988763
No 37
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=89.17 E-value=0.61 Score=31.73 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=32.0
Q ss_pred HhhhhCCcEEEEEecCCeEEEEEEEEecCccceEe--eceEEEe
Q 033930 27 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL--ENVREMW 68 (108)
Q Consensus 27 ~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL--~d~~E~~ 68 (108)
..++ |+.|.|.|+||..++|++..+|. =+|+| .+|...+
T Consensus 8 sqFl--Gy~V~v~LkDgs~~qG~I~~vd~-k~LtL~~~~a~~s~ 48 (125)
T 4a53_A 8 ADFY--GSNVEVLLNNDSKARGVITNFDS-SNSILQLRLANDST 48 (125)
T ss_dssp HHHT--TCEEEEEETTSCEEEEEEEEEET-TTTEEEEEETTTEE
T ss_pred HHhc--CceEEEEECCCCEeeEEEEeecC-CeeEEecccccccc
Confidence 4567 99999999999999999999984 46777 8875443
No 38
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=84.05 E-value=1.2 Score=31.16 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=27.5
Q ss_pred CCCcHHH---HHhhhhCCcEEEEEec----CCeEEEEEEEEecCc
Q 033930 19 NTGPLSV---LMMSVKNNTQVLINCR----NNKKLLGRVRAFDRH 56 (108)
Q Consensus 19 ~~~Pl~~---L~~~~~~~krV~V~l~----~gr~i~G~L~~fD~h 56 (108)
..-||.- +.++. |+.|.|.++ +.+.++|+|.++|.-
T Consensus 89 ldRpL~~~~df~r~~--G~~V~V~l~~~~~g~k~~~G~L~~~~~~ 131 (164)
T 1ib8_A 89 LERPLKTKDAVAGAV--GKYIHVGLYQAIDKQKVFEGTLLAFEED 131 (164)
T ss_dssp SSSCCSSHHHHHHHC--SEEEEEECSSCSSSCSEEEEEEEEEETT
T ss_pred CCCCCCCHHHHHHhC--CcEEEEEEecccCCceEEEEEEEEEeCC
Confidence 3456554 34666 999999994 458999999999875
No 39
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=83.73 E-value=6.5 Score=25.06 Aligned_cols=68 Identities=19% Similarity=0.357 Sum_probs=48.5
Q ss_pred CCcEEEEEecCCeEEEEEEEEecCc-cceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCCcEEEEE
Q 033930 32 NNTQVLINCRNNKKLLGRVRAFDRH-CNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104 (108)
Q Consensus 32 ~~krV~V~l~~gr~i~G~L~~fD~h-mNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd~Iv~I~ 104 (108)
.|++|.+..+.+-.|+|+|...|.. --+.|.+|..+-++-+... ....+ ...-...++.||+.|--+.
T Consensus 12 IGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~---~~ipp--~~~vy~yIvFrgsDIKdL~ 80 (88)
T 2vxe_A 12 LGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQ---FQIAP--QSQIYDYILFRGSDIKDIR 80 (88)
T ss_dssp TTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCS---SCCCC--CCSCEEEEEEETTTEEEEE
T ss_pred cCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCC---cccCC--CCceeeEEEEccCCccEEE
Confidence 3999999999999999999999865 4577999887754422111 01111 2234689999999997654
No 40
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=81.71 E-value=8.2 Score=24.92 Aligned_cols=72 Identities=17% Similarity=0.247 Sum_probs=48.6
Q ss_pred HhhhhCCcEEEEEecCCeEEEEEEEEecCc-cceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCCcEEEEEe
Q 033930 27 MMSVKNNTQVLINCRNNKKLLGRVRAFDRH-CNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 105 (108)
Q Consensus 27 ~~~~~~~krV~V~l~~gr~i~G~L~~fD~h-mNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd~Iv~I~~ 105 (108)
..++ |++|.+..+.+-.|+|+|...|.. --+.|.+|..+-++-+... . . ..+ ...-...++.||+.|--+.-
T Consensus 15 ~~~I--Gs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~-~-~-ipp--~~~vyeyIvFrGsDIKDL~V 87 (95)
T 2fb7_A 15 TPYI--GSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTD-R-P-IAP--RDETFEYIIFRGSDIKDLTV 87 (95)
T ss_dssp -CCS--SEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCS-S-C-CCS--CCCCSSCEEECSTTEEEEEE
T ss_pred Cccc--CCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCC-C-c-cCC--CCcceeEEEEcCCCcceEEE
Confidence 3455 999999999999999999998853 4577888776644322110 0 0 111 22346899999999976543
No 41
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=81.65 E-value=2.3 Score=27.47 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=22.2
Q ss_pred HHHHhhhhCCcEEEEEecCCeEEEEEE
Q 033930 24 SVLMMSVKNNTQVLINCRNNKKLLGRV 50 (108)
Q Consensus 24 ~~L~~~~~~~krV~V~l~~gr~i~G~L 50 (108)
.-+...+.-..+|++.|.||+.+.|++
T Consensus 19 e~~~~~LdGq~~v~i~l~DGs~l~GTv 45 (101)
T 2e12_A 19 EHWVKLLDGQERVRIELDDGSMIAGTV 45 (101)
T ss_dssp HHHHHTSCTTCEEEEEETTSCEEEEEE
T ss_pred HHHHHhhCCeeEEEEEEcCCCeEeeee
Confidence 344555667899999999999999985
No 42
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=81.19 E-value=2.8 Score=31.15 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=30.3
Q ss_pred hCCcEEEEEecCCeEEEEEEEEecCccceEeece
Q 033930 31 KNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64 (108)
Q Consensus 31 ~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~ 64 (108)
..|++|+|.+.++..++|+..|.|..-.|+|++.
T Consensus 222 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 222 TIGSRVRVELPGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp STTSEEEEECTTSCEEEEEEEEECTTSCEEEEET
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEEEEEC
Confidence 3589999998888999999999999999999754
No 43
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=75.25 E-value=5.3 Score=25.26 Aligned_cols=36 Identities=28% Similarity=0.305 Sum_probs=32.2
Q ss_pred hhhhCCcEEEEEecCCe-EEEEEEEEecCc-cceEeeceE
Q 033930 28 MSVKNNTQVLINCRNNK-KLLGRVRAFDRH-CNMVLENVR 65 (108)
Q Consensus 28 ~~~~~~krV~V~l~~gr-~i~G~L~~fD~h-mNlvL~d~~ 65 (108)
.|+ |+.|.|..+++- .|+|.|...|.+ -||.|.+|.
T Consensus 6 ~~i--Gs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f 43 (84)
T 2vc8_A 6 DWL--GSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF 43 (84)
T ss_dssp TTT--TCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred ccc--CCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh
Confidence 577 999999999998 999999999987 479999984
No 44
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=69.51 E-value=11 Score=22.89 Aligned_cols=41 Identities=20% Similarity=0.427 Sum_probs=33.2
Q ss_pred hhCCcEEEEEecCCeEEEEEEEEecCccceEe-eceEEEeec
Q 033930 30 VKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL-ENVREMWTE 70 (108)
Q Consensus 30 ~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL-~d~~E~~~~ 70 (108)
..++..|.+.-.||+.|-|+++...+.-=||. +|-.|.|..
T Consensus 16 ~~~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~ 57 (69)
T 2xk0_A 16 YALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCE 57 (69)
T ss_dssp CCTTCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCEEEEC
T ss_pred cccCCeEEEEecCCCEEEEEEEecCCceEEEEecCCcceeee
Confidence 34599999999999999999988887766665 677777754
No 45
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=62.86 E-value=8.5 Score=27.76 Aligned_cols=31 Identities=6% Similarity=0.133 Sum_probs=26.5
Q ss_pred hCCcEEEEEecCCeEEEEEEEEecCccceEeec
Q 033930 31 KNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 63 (108)
Q Consensus 31 ~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d 63 (108)
..+++|+|...++ +.|+..|.|..-.|+|++
T Consensus 186 ~~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 216 (233)
T 2eay_A 186 YLGEEVKLLGEGK--ITGKLVGLSEKGGALILT 216 (233)
T ss_dssp TTTSEEEETTEEE--EEEEEEEECTTSCEEEEE
T ss_pred ccCCEEEEEECCe--EEEEEEEECCCCeEEEEE
Confidence 3699999976544 999999999999999975
No 46
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=58.13 E-value=21 Score=25.67 Aligned_cols=32 Identities=25% Similarity=0.222 Sum_probs=27.9
Q ss_pred hCCcEEEEEecCCeEEEEEEEEecCccceEeec
Q 033930 31 KNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 63 (108)
Q Consensus 31 ~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d 63 (108)
..+++|+|...++..+.|+..|.|..-.|+ ++
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 369999999877766999999999999999 64
No 47
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=55.95 E-value=12 Score=27.11 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=25.3
Q ss_pred hhhhCCcEEEEEecCCeEEEEEEEEecCccceEeec
Q 033930 28 MSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 63 (108)
Q Consensus 28 ~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d 63 (108)
.+. .+++|+|...++ +.|+..|.|..-.|++++
T Consensus 185 ~~~-~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 185 NMI-LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp HBC-CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred hcc-cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 344 699999987765 999999999999999975
No 48
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=53.42 E-value=27 Score=26.09 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=28.7
Q ss_pred hhhCCcEEEEEecCCeEEEEEEEEecCccceEeec
Q 033930 29 SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 63 (108)
Q Consensus 29 ~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d 63 (108)
+...|++|+|... +..+.|+..|.|..-.|+|.+
T Consensus 269 ~~~~g~~V~v~~~-~~~~~G~~~gid~~G~L~v~~ 302 (321)
T 1bia_A 269 DNFINRPVKLIIG-DKEIFGISRGIDKQGALLLEQ 302 (321)
T ss_dssp BTTTTSEEEEEET-TEEEEEEEEEECTTSCEEEEE
T ss_pred hhhcCCEEEEEEC-CcEEEEEEEEECCCCeEEEEE
Confidence 3446999999874 568999999999999999975
No 49
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=50.71 E-value=25 Score=27.46 Aligned_cols=35 Identities=9% Similarity=0.293 Sum_probs=29.8
Q ss_pred hhCCcEEEEEecCCeEEEEEEEEecCccceEeece
Q 033930 30 VKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64 (108)
Q Consensus 30 ~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~ 64 (108)
+.....|.|.+.+|+.+.++++++|...+|.|=.+
T Consensus 84 v~~a~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 84 INQAQKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred hCCCCEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 34457899999999999999999999999887654
No 50
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=49.93 E-value=23 Score=27.92 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=28.6
Q ss_pred CCcEEEEEecCCeEEEEEEEEecCccceEeece
Q 033930 32 NNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64 (108)
Q Consensus 32 ~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~ 64 (108)
....|.|.+.+|+.+.++++++|....|.|=.+
T Consensus 109 ~a~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 109 NATVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp TEEEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 346899999999999999999999999887554
No 51
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=49.29 E-value=27 Score=20.49 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=30.1
Q ss_pred hCCcEEEEEecCCeEEEEEEEEecCc---cceEeeceEEEeec
Q 033930 31 KNNTQVLINCRNNKKLLGRVRAFDRH---CNMVLENVREMWTE 70 (108)
Q Consensus 31 ~~~krV~V~l~~gr~i~G~L~~fD~h---mNlvL~d~~E~~~~ 70 (108)
..|.-|.+.-.||+.|-|+++.+|+. +=+...|-.+.|..
T Consensus 5 ~~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~ 47 (58)
T 4hcz_A 5 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVL 47 (58)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ccCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEEE
Confidence 35889999999999999999998776 23344566666643
No 52
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=47.64 E-value=1.4 Score=28.74 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=17.0
Q ss_pred EEEEEEecCccceEeeceE
Q 033930 47 LGRVRAFDRHCNMVLENVR 65 (108)
Q Consensus 47 ~G~L~~fD~hmNlvL~d~~ 65 (108)
.|+++.||+-.||.|++|.
T Consensus 34 ~~~~~~FDk~TNl~LEeA~ 52 (99)
T 1x4r_A 34 KNITQCFDKMTNMKLEVAW 52 (99)
T ss_dssp SSCEEECCTTHHHHHHHHH
T ss_pred CCeEeechHHHHHHHHHHH
Confidence 4678999999999999976
No 53
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=47.28 E-value=37 Score=24.19 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=24.9
Q ss_pred hhCCcEEEEEecCCeEEEEEEEEecCccceEeec
Q 033930 30 VKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 63 (108)
Q Consensus 30 ~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d 63 (108)
...|++|+| ++ +.|+..|.|..-.|+|++
T Consensus 191 ~~~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 191 HGMGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTTTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred hhcCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 336899999 45 999999999999999975
No 54
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=46.36 E-value=57 Score=21.02 Aligned_cols=64 Identities=9% Similarity=0.184 Sum_probs=42.3
Q ss_pred EEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCC----ccccccCcceeeeceEEEeCCcEEEEEe
Q 033930 37 LINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG----KKKALPVNKDRFISKMFLRGDSVIIVLR 105 (108)
Q Consensus 37 ~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~----~~~~~~~~~~r~lg~i~IRGd~Iv~I~~ 105 (108)
.|+|++|.++-|.+.--|.. +.+.|..+.+......|++ -..+-+... -..++||.+.|++++.
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~plsd---e~~~ii~~~~ViT~~e 74 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYTD---DKEIVIDDSKVITITS 74 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTBC---CSEEEEEGGGEEEEEC
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccCc---CceEEEchhhEEEEEe
Confidence 46799999999998866664 8889999988543222221 111112221 4689999999999875
No 55
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=43.71 E-value=33 Score=25.90 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=26.8
Q ss_pred hCCcEEEEEecCCeEEEEEEEEecCccceEeec
Q 033930 31 KNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 63 (108)
Q Consensus 31 ~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d 63 (108)
..|++|+|.. ++..+.|+..|.|..-.|+|++
T Consensus 277 ~~g~~V~v~~-~~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 277 IWNRTLLFTE-NDKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CSSSCEEEEC-C-CEEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEE-CCeEEEEEEEEECCCCEEEEEE
Confidence 3589999976 4668999999999999999964
No 56
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=43.58 E-value=40 Score=24.85 Aligned_cols=35 Identities=6% Similarity=0.214 Sum_probs=28.7
Q ss_pred hhCCcEEEEEecCCeEEEEEEEEecCccceEeece
Q 033930 30 VKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64 (108)
Q Consensus 30 ~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~ 64 (108)
+.....+.|.+.+|+.+.+.+++||...+|.|=.+
T Consensus 62 v~~~~~i~V~~~~g~~~~a~v~~~d~~~DlAllk~ 96 (318)
T 1te0_A 62 INDADQIIVALQDGRVFEALLVGSDSLTDLAVLII 96 (318)
T ss_dssp HTTCSEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred cCCCCEEEEEeCCCCEEEEEEEEeCCCceEEEEEE
Confidence 33445789999999999999999999999877544
No 57
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=43.16 E-value=26 Score=22.91 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=20.6
Q ss_pred cCCeEEEEEE---EEecCccceEeeceEEE
Q 033930 41 RNNKKLLGRV---RAFDRHCNMVLENVREM 67 (108)
Q Consensus 41 ~~gr~i~G~L---~~fD~hmNlvL~d~~E~ 67 (108)
++...+.|.| .-.|+.|.++|.|++-.
T Consensus 52 ksk~sfKG~L~tYrfcDnVWTf~lkd~~fk 81 (108)
T 1nvp_D 52 RNRVNFRGSLNTYRFCDNVWTFVLNDVEFR 81 (108)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ccCCeEeeccCCccccCcEEEEEEeceEEE
Confidence 3446777877 45699999999998854
No 58
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=42.62 E-value=33 Score=25.97 Aligned_cols=35 Identities=9% Similarity=0.293 Sum_probs=29.0
Q ss_pred hhCCcEEEEEecCCeEEEEEEEEecCccceEeece
Q 033930 30 VKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64 (108)
Q Consensus 30 ~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~ 64 (108)
+.....+.|.+.+|+.+.+.++++|....|-|=.+
T Consensus 84 v~~~~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 84 INQAQKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp HTTEEEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred hCCCCEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 33446899999999999999999999998876543
No 59
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=41.10 E-value=46 Score=24.70 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=28.8
Q ss_pred hhCCcEEEEEecCCeEEEEEEEEecCccceEeece
Q 033930 30 VKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64 (108)
Q Consensus 30 ~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~ 64 (108)
+.....+.|.+.+|+.+.+.++++|....|-|=..
T Consensus 67 v~~~~~i~V~~~~g~~~~a~v~~~d~~~DlAllkl 101 (325)
T 1lcy_A 67 VADRRRVRVRLLSGDTYEAVVTAVDPVADIATLRI 101 (325)
T ss_dssp HTTCSEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred cCCCCEEEEEeCCCCEEEEEEEEECCCCCEEEEEE
Confidence 44456899999999999999999999988876544
No 60
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=40.11 E-value=53 Score=23.04 Aligned_cols=35 Identities=6% Similarity=0.248 Sum_probs=29.0
Q ss_pred hhCCcEEEEEecCCeEEEEEEEEecCccceEeece
Q 033930 30 VKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64 (108)
Q Consensus 30 ~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~ 64 (108)
+.....+.|.+.+|+.+.+.++++|....|-|=..
T Consensus 73 v~~~~~~~V~~~~g~~~~a~vv~~d~~~DlAll~l 107 (237)
T 3lgi_A 73 INDADQIIVALQDGRVFEALLVGSDSLTDLAVLKI 107 (237)
T ss_dssp HTTCSEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred cCCCCEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 34457899999999999999999999988876543
No 61
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=39.89 E-value=30 Score=23.08 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=21.2
Q ss_pred cCCeEEEEEE---EEecCccceEeeceEEEe
Q 033930 41 RNNKKLLGRV---RAFDRHCNMVLENVREMW 68 (108)
Q Consensus 41 ~~gr~i~G~L---~~fD~hmNlvL~d~~E~~ 68 (108)
++...+.|.| .-.|..|.++|.|++-..
T Consensus 56 ksk~sfKG~L~tYrfcDnVWtfilkd~~fk~ 86 (121)
T 1nh2_D 56 QSKLTVKGNLDTYGFCDDVWTFIVKNCQVTV 86 (121)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred ccCCeEEeeeccccccCcEEEEEEeceEEEe
Confidence 3456777877 455999999999998554
No 62
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=39.47 E-value=17 Score=22.70 Aligned_cols=26 Identities=12% Similarity=0.307 Sum_probs=21.1
Q ss_pred HHHHhhhhCCcEEEEEecCCeEEEEE
Q 033930 24 SVLMMSVKNNTQVLINCRNNKKLLGR 49 (108)
Q Consensus 24 ~~L~~~~~~~krV~V~l~~gr~i~G~ 49 (108)
+.|.-+..-+.+|+|.++||..+.|+
T Consensus 16 D~LElAc~~~~~l~l~l~dGe~~~g~ 41 (86)
T 1sg5_A 16 DNLELACQHHLMLTLELKDGEKLQAK 41 (86)
T ss_dssp HHHHHHHTTTTCEEEECTTTCCEEES
T ss_pred hHHHHHHHcCCeEEEEEeCCCEEEEE
Confidence 45666655689999999999999885
No 63
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=37.53 E-value=40 Score=21.37 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=21.4
Q ss_pred HHHhhhhCCcEEEEEecCCe----EEEEEEEEe
Q 033930 25 VLMMSVKNNTQVLINCRNNK----KLLGRVRAF 53 (108)
Q Consensus 25 ~L~~~~~~~krV~V~l~~gr----~i~G~L~~f 53 (108)
-|..++ |++|.+..+.|| +-.|+|..-
T Consensus 19 ~l~~~v--G~~V~l~An~GRkK~~er~GvL~et 49 (90)
T 3fb9_A 19 EIKAHE--GQVVEMTLENGRKRQKNRLGKLIEV 49 (90)
T ss_dssp HHHHTT--TSEEEEEECCSSSCCSCEEEEEEEE
T ss_pred HHHHcC--CCEEEEEecCCcccEEEEEEEEEEe
Confidence 356667 999999999998 477988653
No 64
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=37.44 E-value=33 Score=26.96 Aligned_cols=35 Identities=11% Similarity=0.352 Sum_probs=29.4
Q ss_pred hhCCcEEEEEecCCeEEEEEEEEecCccceEeece
Q 033930 30 VKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64 (108)
Q Consensus 30 ~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~ 64 (108)
+.....+.|.+.+|+.+.+.++++|....|-|=.+
T Consensus 98 v~~a~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 98 IRNASLITVTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp HTTEEEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred hCCCCEEEEEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 33446799999999999999999999999877554
No 65
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=35.87 E-value=50 Score=23.20 Aligned_cols=35 Identities=17% Similarity=0.400 Sum_probs=29.0
Q ss_pred hhCCcEEEEEecCCeEEEEEEEEecCccceEeece
Q 033930 30 VKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64 (108)
Q Consensus 30 ~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~ 64 (108)
+.....+.|.+.+|+.+.+.++++|....|-|=..
T Consensus 83 v~~~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~l 117 (231)
T 3tjo_A 83 VTNKHRVKVELKNGATYEAKIKDVDEKADIALIKI 117 (231)
T ss_dssp CCSSSEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred ccCCceEEEEcCCCCEEEEEEEEecCCCCEEEEEe
Confidence 33457899999999999999999999988876543
No 66
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=34.45 E-value=44 Score=24.01 Aligned_cols=33 Identities=9% Similarity=0.271 Sum_probs=26.3
Q ss_pred CCcEEEEEecCCeEEEEEEEEecCccceEeece
Q 033930 32 NNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64 (108)
Q Consensus 32 ~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~ 64 (108)
....+.|.+.+|+.+.+.++++|....|.|=.+
T Consensus 86 ~a~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (245)
T 3sti_A 86 QAQKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (245)
T ss_dssp ---CEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEECCCCEEEEEEEEecCCCCEEEEEe
Confidence 346789999999999999999999988876543
No 67
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=32.81 E-value=75 Score=23.75 Aligned_cols=35 Identities=9% Similarity=0.313 Sum_probs=29.1
Q ss_pred hhCCcEEEEEecCCeEEEEEEEEecCccceEeece
Q 033930 30 VKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64 (108)
Q Consensus 30 ~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~ 64 (108)
+.....+.|.+.+++.+.+.++++|....|-|=..
T Consensus 73 v~~~~~i~V~~~~g~~~~a~~v~~d~~~DlAlLkl 107 (348)
T 3qo6_A 73 IRGASDLRVTLADQTTFDAKVVGFDQDKDVAVLRI 107 (348)
T ss_dssp HTTCSEEEEECTTSCEEEEEEEEEEGGGTEEEEEC
T ss_pred hCCCcEEEEEECCCCEEEEEEEEEcCcCCEEEEEE
Confidence 34456899999999999999999999988876544
No 68
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=30.58 E-value=54 Score=24.12 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=26.9
Q ss_pred cEEEEEecCCeEEEEEEEEecCccceEeece
Q 033930 34 TQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64 (108)
Q Consensus 34 krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~ 64 (108)
..+.|.+.+++.+.+.+++||....|-|=..
T Consensus 64 ~~i~V~~~~g~~~~a~vv~~d~~~DlAllkl 94 (324)
T 1y8t_A 64 PKTTVTFSDGRTAPFTVVGADPTSDIAVVRV 94 (324)
T ss_dssp CEEEEEETTCCEECEEEEECCTTTTEEEEEE
T ss_pred eEEEEEeCCCCEEEEEEEEeCCCCCEEEEEE
Confidence 4899999999999999999999998877544
No 69
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=28.10 E-value=85 Score=23.17 Aligned_cols=34 Identities=15% Similarity=0.379 Sum_probs=28.5
Q ss_pred hCCcEEEEEecCCeEEEEEEEEecCccceEeece
Q 033930 31 KNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64 (108)
Q Consensus 31 ~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~ 64 (108)
.....+.|.+.+|+.+.+.++++|....|-|=..
T Consensus 67 ~~~~~i~V~~~~g~~~~a~~~~~d~~~DlAlL~l 100 (332)
T 3num_A 67 TNKHRVKVELKNGATYEAKIKDVDEKADIALIKI 100 (332)
T ss_dssp CTTSEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEEEEecCCCCeEEEEE
Confidence 3456899999999999999999999988876543
No 70
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=23.70 E-value=54 Score=20.31 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=31.2
Q ss_pred hhhCCcEEEEEecCCeEEEEEEEEecCc---cceEeeceEEEee
Q 033930 29 SVKNNTQVLINCRNNKKLLGRVRAFDRH---CNMVLENVREMWT 69 (108)
Q Consensus 29 ~~~~~krV~V~l~~gr~i~G~L~~fD~h---mNlvL~d~~E~~~ 69 (108)
-+.+|.-|.+.-.||+.|-|+++..|+. +=+...|-.+.|.
T Consensus 26 ~f~eGeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~ 69 (79)
T 2m0o_A 26 RLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 69 (79)
T ss_dssp CCCTTCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eeccCCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcCCCeEEE
Confidence 3456999999999999999999988863 3344566666664
No 71
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=23.00 E-value=83 Score=20.74 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=19.8
Q ss_pred CCcEEEEEecCCeEEEEEEEEec
Q 033930 32 NNTQVLINCRNNKKLLGRVRAFD 54 (108)
Q Consensus 32 ~~krV~V~l~~gr~i~G~L~~fD 54 (108)
.|.+|..+-++|+.++|++++-.
T Consensus 8 vGq~V~akh~ngryy~~~V~~~~ 30 (118)
T 2qqr_A 8 AGQKVISKHKNGRFYQCEVVRLT 30 (118)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEE
T ss_pred cCCEEEEECCCCCEEeEEEEEEe
Confidence 48999999999999999887654
No 72
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=22.69 E-value=8.9 Score=26.70 Aligned_cols=24 Identities=4% Similarity=0.318 Sum_probs=14.9
Q ss_pred CcEEEEEecCCeEEEEEEEEecCc
Q 033930 33 NTQVLINCRNNKKLLGRVRAFDRH 56 (108)
Q Consensus 33 ~krV~V~l~~gr~i~G~L~~fD~h 56 (108)
...|.-.+++|+.+...|.|.|-|
T Consensus 398 ~~~v~~Vi~~G~vv~~~l~g~~G~ 421 (426)
T 3mkv_A 398 GEHIPLVMKDGRLFVNELEGHEGH 421 (426)
T ss_dssp STTCCEEEETTEEEEECCC-----
T ss_pred CCCccEEEECCEEEECCccCCCCC
Confidence 445666778999998888888876
No 73
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=21.70 E-value=1.4e+02 Score=17.83 Aligned_cols=39 Identities=18% Similarity=0.476 Sum_probs=28.9
Q ss_pred hCCcEEEEEecCCeEEEEEEEEecCc---cceEeeceEEEee
Q 033930 31 KNNTQVLINCRNNKKLLGRVRAFDRH---CNMVLENVREMWT 69 (108)
Q Consensus 31 ~~~krV~V~l~~gr~i~G~L~~fD~h---mNlvL~d~~E~~~ 69 (108)
..|..|+..=.||+.|-|++...|+. +=+...|-.+.|.
T Consensus 15 ~vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~ 56 (66)
T 2eqj_A 15 EEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWV 56 (66)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred cCCCEEEEEEccCcEEEeEEEEEccCCcEEEEEEccCCEEEE
Confidence 45888998889999999999999964 3333355555554
No 74
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=21.45 E-value=68 Score=19.00 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=18.8
Q ss_pred CcEEEEEecCCeEEEEEEEEecC
Q 033930 33 NTQVLINCRNNKKLLGRVRAFDR 55 (108)
Q Consensus 33 ~krV~V~l~~gr~i~G~L~~fD~ 55 (108)
-.+|.|.+-||..+.+++..-|.
T Consensus 7 ~~~i~iRlpdG~r~~~~F~~~~t 29 (84)
T 3qx1_A 7 VSKLRIRTPSGEFLERRFLASNK 29 (84)
T ss_dssp EEEEEEECTTSCEEEEEEETTSB
T ss_pred eEEEEEECCCCCEEEEEeCCCCC
Confidence 46899999999999998776554
No 75
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=21.36 E-value=82 Score=25.71 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=27.3
Q ss_pred hCCcEEEEEec-CCeEEEEEEEEecCccceEeec
Q 033930 31 KNNTQVLINCR-NNKKLLGRVRAFDRHCNMVLEN 63 (108)
Q Consensus 31 ~~~krV~V~l~-~gr~i~G~L~~fD~hmNlvL~d 63 (108)
.....|.|.+. ||+.+.++++++|....|-|=.
T Consensus 94 ~~a~~i~V~~~~dg~~~~A~vv~~D~~~DLAvLk 127 (539)
T 4fln_A 94 EHDTQVKVKRRGDDRKYVAKVLVRGVDCDIALLS 127 (539)
T ss_dssp TTEEEEEEECTTCCCCEEEEEEEEETTTTEEEEE
T ss_pred CCCCeEEEEEccCCEEEEEEEEEECCCCCEEEEE
Confidence 34567899886 8999999999999999887644
No 76
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=20.86 E-value=59 Score=23.29 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=15.7
Q ss_pred CcEEEEEecCCeEEEEEEEE
Q 033930 33 NTQVLINCRNNKKLLGRVRA 52 (108)
Q Consensus 33 ~krV~V~l~~gr~i~G~L~~ 52 (108)
|..|+|.+.+|+.+.|++.+
T Consensus 171 Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 171 AQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp TSEEEEEETTSCEEEEEECT
T ss_pred CCEEEEECCCCCEEEEEEec
Confidence 77888888888888887644
No 77
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1
Probab=20.47 E-value=42 Score=23.91 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=27.7
Q ss_pred hhCCcEEEEEecCCeEEEEEEEEecCccceEeece
Q 033930 30 VKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64 (108)
Q Consensus 30 ~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~ 64 (108)
+.....+.|.+.+|+.+.+.++++|....|.|=..
T Consensus 76 v~~~~~i~V~~~~g~~~~a~vv~~d~~~DlAllkl 110 (239)
T 1l1j_A 76 VGGADNITVTMLDGSKYDAEYIGGDEELDIAVIKI 110 (239)
T ss_dssp HSSCSSCEEECTTSCEEEBCCCEEETTTTEEEEEB
T ss_pred hCCCCEEEEEECCCCEEEEEEEEEcCCCCEEEEEE
Confidence 33345788999999999999999999888876443
Done!