Query 033931
Match_columns 108
No_of_seqs 111 out of 219
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 13:11:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_Z RP45, S31, YS23, 40S ri 100.0 4.8E-55 1.6E-59 308.8 4.6 107 1-108 1-107 (108)
2 3iz6_V 40S ribosomal protein S 100.0 9.3E-55 3.2E-59 307.3 2.2 107 1-108 1-108 (108)
3 2xzm_8 RPS25E,; ribosome, tran 100.0 2.9E-49 1E-53 290.2 7.6 105 1-107 4-110 (143)
4 1xn7_A Hypothetical protein YH 97.4 8.8E-05 3E-09 48.4 3.0 46 48-93 4-49 (78)
5 2b0l_A GTP-sensing transcripti 97.3 0.00021 7.2E-09 48.1 3.7 54 48-101 30-85 (102)
6 2k02_A Ferrous iron transport 97.2 0.00014 4.9E-09 48.7 2.1 47 48-94 4-50 (87)
7 2jt1_A PEFI protein; solution 97.2 0.00022 7.5E-09 46.5 2.7 45 59-103 23-67 (77)
8 3neu_A LIN1836 protein; struct 96.9 0.0025 8.6E-08 43.6 6.1 51 45-95 16-72 (125)
9 2htj_A P fimbrial regulatory p 96.8 0.0037 1.3E-07 39.3 5.9 43 61-103 15-58 (81)
10 2dk5_A DNA-directed RNA polyme 96.7 0.0027 9.3E-08 42.1 4.9 44 60-103 36-81 (91)
11 2qvo_A Uncharacterized protein 96.6 0.0032 1.1E-07 40.5 4.9 43 59-102 29-71 (95)
12 3tqn_A Transcriptional regulat 96.6 0.0038 1.3E-07 41.9 5.3 49 46-94 13-67 (113)
13 1xmk_A Double-stranded RNA-spe 96.6 0.0031 1.1E-07 41.3 4.6 57 45-103 10-67 (79)
14 4ham_A LMO2241 protein; struct 96.5 0.0049 1.7E-07 42.3 5.3 49 46-94 18-72 (134)
15 3cuo_A Uncharacterized HTH-typ 96.4 0.0083 2.8E-07 37.7 5.9 56 47-103 25-80 (99)
16 2d1h_A ST1889, 109AA long hypo 96.3 0.0076 2.6E-07 37.9 5.3 36 59-94 35-70 (109)
17 2fu4_A Ferric uptake regulatio 96.2 0.0071 2.4E-07 37.7 4.7 45 59-103 32-81 (83)
18 3tgn_A ADC operon repressor AD 96.2 0.0043 1.5E-07 41.2 3.8 43 51-94 43-85 (146)
19 1r7j_A Conserved hypothetical 96.2 0.0097 3.3E-07 39.3 5.4 45 48-94 10-54 (95)
20 3f8m_A GNTR-family protein tra 96.2 0.011 3.8E-07 44.5 6.3 44 56-101 32-75 (248)
21 1p6r_A Penicillinase repressor 96.2 0.012 4.2E-07 36.6 5.5 45 60-105 23-71 (82)
22 3by6_A Predicted transcription 96.2 0.0093 3.2E-07 40.9 5.3 51 45-95 14-70 (126)
23 1qbj_A Protein (double-strande 96.1 0.0032 1.1E-07 41.1 2.8 50 45-94 9-61 (81)
24 1oyi_A Double-stranded RNA-bin 96.0 0.0098 3.4E-07 39.4 4.8 50 46-96 17-66 (82)
25 3ic7_A Putative transcriptiona 96.0 0.0053 1.8E-07 42.1 3.5 51 45-95 14-70 (126)
26 2hs5_A Putative transcriptiona 96.0 0.016 5.5E-07 43.0 6.4 50 45-95 31-86 (239)
27 1v4r_A Transcriptional repress 96.0 0.0035 1.2E-07 40.9 2.4 51 44-94 13-69 (102)
28 1sfx_A Conserved hypothetical 96.0 0.031 1.1E-06 34.9 6.8 34 61-94 35-68 (109)
29 1hw1_A FADR, fatty acid metabo 95.9 0.016 5.3E-07 42.2 5.9 51 45-95 10-66 (239)
30 3hsr_A HTH-type transcriptiona 95.9 0.022 7.6E-07 37.9 6.2 44 50-93 40-83 (140)
31 2gxg_A 146AA long hypothetical 95.9 0.014 4.9E-07 38.5 5.2 37 58-94 48-84 (146)
32 1qgp_A Protein (double strande 95.9 0.022 7.4E-07 36.4 5.8 44 51-94 22-65 (77)
33 2xvc_A ESCRT-III, SSO0910; cel 95.9 0.0081 2.8E-07 38.0 3.6 46 44-92 12-57 (59)
34 3eco_A MEPR; mutlidrug efflux 95.9 0.016 5.6E-07 38.1 5.3 34 60-93 47-80 (139)
35 1okr_A MECI, methicillin resis 95.8 0.016 5.5E-07 37.9 5.2 45 60-105 24-72 (123)
36 3bdd_A Regulatory protein MARR 95.8 0.016 5.6E-07 37.9 5.2 35 60-94 45-79 (142)
37 2oqg_A Possible transcriptiona 95.8 0.016 5.6E-07 37.4 5.1 42 61-103 35-76 (114)
38 2ek5_A Predicted transcription 95.8 0.013 4.5E-07 40.4 4.9 50 46-95 8-63 (129)
39 3jth_A Transcription activator 95.8 0.025 8.4E-07 36.0 5.7 57 46-104 23-79 (98)
40 1jgs_A Multiple antibiotic res 95.8 0.019 6.5E-07 37.6 5.3 43 60-102 48-92 (138)
41 1ub9_A Hypothetical protein PH 95.8 0.024 8.3E-07 35.4 5.6 45 59-103 29-75 (100)
42 1q1h_A TFE, transcription fact 95.7 0.014 4.7E-07 38.1 4.5 33 61-93 34-66 (110)
43 1tbx_A ORF F-93, hypothetical 95.7 0.021 7.3E-07 36.3 5.3 44 58-101 20-67 (99)
44 3bro_A Transcriptional regulat 95.7 0.019 6.5E-07 37.6 5.1 35 60-94 50-84 (141)
45 3oop_A LIN2960 protein; protei 95.7 0.017 5.8E-07 38.3 4.9 36 59-94 50-85 (143)
46 3r0a_A Putative transcriptiona 95.7 0.024 8.2E-07 38.3 5.7 48 44-93 28-75 (123)
47 2wv0_A YVOA, HTH-type transcri 95.7 0.024 8.1E-07 42.4 6.1 39 56-94 30-68 (243)
48 2di3_A Bacterial regulatory pr 95.7 0.016 5.4E-07 42.6 5.0 48 45-92 7-60 (239)
49 2pg4_A Uncharacterized protein 95.7 0.012 4.3E-07 37.5 4.0 41 60-100 30-71 (95)
50 3bj6_A Transcriptional regulat 95.6 0.018 6.3E-07 38.3 4.9 35 60-94 54-88 (152)
51 3bpv_A Transcriptional regulat 95.6 0.024 8.3E-07 37.0 5.4 36 59-94 42-77 (138)
52 2nnn_A Probable transcriptiona 95.6 0.025 8.7E-07 36.9 5.5 34 60-93 52-85 (140)
53 1lj9_A Transcriptional regulat 95.6 0.023 7.8E-07 37.5 5.3 35 60-94 43-77 (144)
54 2y75_A HTH-type transcriptiona 95.6 0.015 5.2E-07 39.1 4.5 38 58-95 24-61 (129)
55 2fbi_A Probable transcriptiona 95.6 0.027 9.2E-07 36.8 5.6 34 61-94 51-84 (142)
56 3eet_A Putative GNTR-family tr 95.6 0.023 7.8E-07 43.5 6.0 40 56-95 49-88 (272)
57 2fbh_A Transcriptional regulat 95.6 0.02 6.9E-07 37.6 5.0 36 59-94 51-86 (146)
58 1ku9_A Hypothetical protein MJ 95.6 0.027 9.1E-07 36.9 5.4 33 61-93 42-74 (152)
59 2pex_A Transcriptional regulat 95.6 0.02 6.8E-07 38.4 4.9 35 60-94 61-95 (153)
60 2hr3_A Probable transcriptiona 95.6 0.019 6.5E-07 38.0 4.7 35 59-93 49-83 (147)
61 3sxy_A Transcriptional regulat 95.5 0.02 6.7E-07 41.5 5.1 51 43-94 13-69 (218)
62 2h09_A Transcriptional regulat 95.5 0.011 3.6E-07 40.5 3.4 49 46-94 40-88 (155)
63 2bv6_A MGRA, HTH-type transcri 95.5 0.017 5.7E-07 38.2 4.3 35 60-94 51-85 (142)
64 2a61_A Transcriptional regulat 95.5 0.03 1E-06 36.8 5.5 35 60-94 47-81 (145)
65 2kko_A Possible transcriptiona 95.5 0.024 8.2E-07 37.3 4.9 43 60-103 38-80 (108)
66 3cjn_A Transcriptional regulat 95.4 0.028 9.7E-07 37.9 5.4 34 60-93 66-99 (162)
67 2v79_A DNA replication protein 95.4 0.02 6.8E-07 40.2 4.7 47 57-103 48-98 (135)
68 1s3j_A YUSO protein; structura 95.4 0.029 9.9E-07 37.4 5.3 36 59-94 50-85 (155)
69 3s2w_A Transcriptional regulat 95.4 0.028 9.5E-07 38.1 5.2 34 60-93 64-97 (159)
70 2eth_A Transcriptional regulat 95.4 0.029 9.9E-07 37.8 5.3 34 60-93 58-91 (154)
71 2rdp_A Putative transcriptiona 95.4 0.026 9.1E-07 37.4 5.0 35 60-94 56-90 (150)
72 3c7j_A Transcriptional regulat 95.4 0.023 7.7E-07 42.3 5.1 48 47-95 31-84 (237)
73 1wi9_A Protein C20ORF116 homol 95.4 0.012 4E-07 38.6 3.0 60 45-104 6-65 (72)
74 2vn2_A DNAD, chromosome replic 95.3 0.013 4.5E-07 40.1 3.4 37 59-95 50-86 (128)
75 1z7u_A Hypothetical protein EF 95.3 0.031 1.1E-06 36.9 5.1 43 61-103 36-81 (112)
76 2qww_A Transcriptional regulat 95.3 0.025 8.5E-07 37.8 4.6 32 61-92 56-87 (154)
77 3k0l_A Repressor protein; heli 95.3 0.024 8.2E-07 38.6 4.6 42 60-101 60-103 (162)
78 3deu_A Transcriptional regulat 95.2 0.025 8.4E-07 39.2 4.6 34 61-94 69-102 (166)
79 3g3z_A NMB1585, transcriptiona 95.2 0.019 6.6E-07 38.1 3.9 33 61-93 46-78 (145)
80 2cfx_A HTH-type transcriptiona 95.2 0.03 1E-06 38.3 5.0 46 44-93 7-52 (144)
81 3e6m_A MARR family transcripti 95.2 0.029 9.9E-07 38.2 4.8 36 59-94 66-101 (161)
82 2k4b_A Transcriptional regulat 95.2 0.036 1.2E-06 37.0 5.1 58 43-105 36-97 (99)
83 3df8_A Possible HXLR family tr 95.2 0.033 1.1E-06 37.1 4.9 41 61-103 43-84 (111)
84 1z91_A Organic hydroperoxide r 95.2 0.024 8.1E-07 37.5 4.2 35 60-94 54-88 (147)
85 2hzt_A Putative HTH-type trans 95.1 0.046 1.6E-06 35.8 5.4 44 60-103 27-73 (107)
86 4hbl_A Transcriptional regulat 95.1 0.022 7.5E-07 38.3 3.9 35 59-93 54-88 (149)
87 3b73_A PHIH1 repressor-like pr 95.1 0.038 1.3E-06 37.9 5.0 49 41-93 12-62 (111)
88 3bja_A Transcriptional regulat 95.0 0.024 8.2E-07 36.9 3.8 34 60-93 47-80 (139)
89 2p5v_A Transcriptional regulat 95.0 0.036 1.2E-06 38.5 4.9 46 44-93 12-57 (162)
90 1r1u_A CZRA, repressor protein 95.0 0.047 1.6E-06 35.5 5.1 42 61-103 40-81 (106)
91 3bwg_A Uncharacterized HTH-typ 95.0 0.072 2.4E-06 39.6 6.7 48 47-94 14-63 (239)
92 1y0u_A Arsenical resistance op 94.9 0.031 1.1E-06 35.7 4.1 47 46-94 31-77 (96)
93 1ylf_A RRF2 family protein; st 94.9 0.032 1.1E-06 38.9 4.4 45 59-104 29-73 (149)
94 2x4h_A Hypothetical protein SS 94.9 0.029 1E-06 37.4 4.0 36 59-94 30-65 (139)
95 2nyx_A Probable transcriptiona 94.9 0.046 1.6E-06 37.6 5.2 34 60-93 59-92 (168)
96 2heo_A Z-DNA binding protein 1 94.9 0.057 1.9E-06 33.2 5.1 45 45-92 13-57 (67)
97 3t8r_A Staphylococcus aureus C 94.9 0.067 2.3E-06 37.3 6.0 49 56-104 24-72 (143)
98 2lkp_A Transcriptional regulat 94.8 0.043 1.5E-06 36.0 4.7 44 60-104 45-88 (119)
99 1sd4_A Penicillinase repressor 94.8 0.07 2.4E-06 34.9 5.7 42 61-103 25-70 (126)
100 3edp_A LIN2111 protein; APC883 94.8 0.041 1.4E-06 41.1 5.0 39 57-95 30-68 (236)
101 3f3x_A Transcriptional regulat 94.8 0.062 2.1E-06 35.5 5.4 32 62-93 52-83 (144)
102 3cdh_A Transcriptional regulat 94.8 0.037 1.3E-06 37.1 4.3 43 51-93 48-90 (155)
103 3lwf_A LIN1550 protein, putati 94.7 0.074 2.5E-06 38.1 6.1 50 56-105 40-89 (159)
104 1on2_A Transcriptional regulat 94.7 0.035 1.2E-06 37.2 4.1 34 60-93 22-55 (142)
105 2w25_A Probable transcriptiona 94.7 0.05 1.7E-06 37.2 4.9 46 44-93 9-54 (150)
106 3fm5_A Transcriptional regulat 94.6 0.024 8.2E-07 37.9 3.1 33 61-93 55-87 (150)
107 3nqo_A MARR-family transcripti 94.6 0.049 1.7E-06 38.5 4.9 36 59-94 56-91 (189)
108 2fsw_A PG_0823 protein; alpha- 94.6 0.084 2.9E-06 34.4 5.6 44 60-103 38-84 (107)
109 3nrv_A Putative transcriptiona 94.6 0.029 9.9E-07 37.2 3.3 35 59-93 53-87 (148)
110 2frh_A SARA, staphylococcal ac 94.5 0.034 1.2E-06 37.1 3.6 35 59-93 52-86 (127)
111 2dbb_A Putative HTH-type trans 94.5 0.052 1.8E-06 37.1 4.6 46 44-93 11-56 (151)
112 2ia0_A Putative HTH-type trans 94.5 0.056 1.9E-06 38.5 4.9 46 44-93 19-64 (171)
113 1u2w_A CADC repressor, cadmium 94.5 0.056 1.9E-06 36.2 4.7 44 60-104 56-99 (122)
114 2v7f_A RPS19, RPS19E SSU ribos 94.5 0.038 1.3E-06 39.8 4.0 32 63-94 70-115 (150)
115 2yu3_A DNA-directed RNA polyme 94.5 0.043 1.5E-06 37.1 4.0 36 58-93 51-86 (95)
116 2cg4_A Regulatory protein ASNC 94.4 0.056 1.9E-06 37.0 4.6 46 44-93 10-55 (152)
117 3ech_A MEXR, multidrug resista 94.3 0.025 8.5E-07 37.5 2.6 35 60-94 51-85 (142)
118 2qc0_A Uncharacterized protein 94.3 0.037 1.3E-06 44.2 3.9 55 45-104 300-354 (373)
119 3u2r_A Regulatory protein MARR 94.2 0.06 2.1E-06 36.8 4.5 35 60-94 62-96 (168)
120 4b8x_A SCO5413, possible MARR- 94.2 0.079 2.7E-06 36.1 5.0 35 60-94 51-85 (147)
121 3ihu_A Transcriptional regulat 94.2 0.083 2.8E-06 38.2 5.3 50 45-95 19-74 (222)
122 3f6o_A Probable transcriptiona 94.2 0.091 3.1E-06 34.8 5.1 42 61-103 32-73 (118)
123 2g9w_A Conserved hypothetical 94.1 0.1 3.4E-06 35.4 5.4 43 60-103 24-70 (138)
124 3pqk_A Biofilm growth-associat 94.0 0.073 2.5E-06 34.1 4.3 43 61-104 37-79 (102)
125 3boq_A Transcriptional regulat 94.0 0.029 1E-06 37.7 2.4 34 60-93 62-95 (160)
126 3kp7_A Transcriptional regulat 94.0 0.032 1.1E-06 37.4 2.6 36 57-92 48-83 (151)
127 2fa5_A Transcriptional regulat 94.0 0.053 1.8E-06 36.5 3.7 35 59-93 62-96 (162)
128 1r1t_A Transcriptional repress 93.9 0.095 3.2E-06 35.4 5.0 53 50-104 50-102 (122)
129 1i1g_A Transcriptional regulat 93.9 0.047 1.6E-06 36.6 3.4 46 44-93 6-51 (141)
130 1sfu_A 34L protein; protein/Z- 93.9 0.29 9.9E-06 32.0 7.0 53 44-96 10-65 (75)
131 1uly_A Hypothetical protein PH 93.8 0.1 3.5E-06 38.1 5.3 43 50-93 24-66 (192)
132 1yyv_A Putative transcriptiona 93.8 0.12 4.1E-06 35.4 5.3 45 59-103 47-94 (131)
133 2pn6_A ST1022, 150AA long hypo 93.7 0.067 2.3E-06 36.4 3.8 34 60-93 17-50 (150)
134 4fx0_A Probable transcriptiona 93.7 0.058 2E-06 37.0 3.5 36 59-94 51-86 (148)
135 2w48_A Sorbitol operon regulat 93.6 0.072 2.5E-06 41.0 4.3 35 59-93 20-55 (315)
136 4aik_A Transcriptional regulat 93.6 0.1 3.5E-06 35.8 4.6 34 60-93 46-79 (151)
137 1xd7_A YWNA; structural genomi 93.5 0.072 2.5E-06 36.9 3.8 42 62-104 25-66 (145)
138 3cuq_B Vacuolar protein-sortin 93.4 0.068 2.3E-06 40.5 3.8 47 58-105 166-212 (218)
139 3hrs_A Metalloregulator SCAR; 93.4 0.17 5.9E-06 37.1 5.9 38 57-94 17-54 (214)
140 3jw4_A Transcriptional regulat 93.3 0.027 9.3E-07 37.6 1.4 34 60-93 57-90 (148)
141 2jsc_A Transcriptional regulat 93.3 0.12 4.1E-06 34.4 4.5 43 61-104 35-77 (118)
142 2fxa_A Protease production reg 93.3 0.09 3.1E-06 38.1 4.2 34 61-94 63-96 (207)
143 2pjp_A Selenocysteine-specific 93.2 0.2 6.8E-06 33.7 5.6 51 45-96 6-56 (121)
144 3k69_A Putative transcription 92.9 0.077 2.6E-06 37.9 3.3 46 59-104 27-72 (162)
145 2f2e_A PA1607; transcription f 92.9 0.19 6.4E-06 34.8 5.2 35 60-94 37-71 (146)
146 4a5n_A Uncharacterized HTH-typ 92.7 0.23 7.9E-06 34.6 5.4 45 59-103 38-85 (131)
147 3f6v_A Possible transcriptiona 92.6 0.22 7.5E-06 35.0 5.3 57 46-104 58-114 (151)
148 3eqx_A FIC domain containing t 92.6 0.1 3.5E-06 42.0 3.9 45 58-103 309-353 (373)
149 3i4p_A Transcriptional regulat 92.5 0.13 4.4E-06 36.0 3.9 43 51-93 8-50 (162)
150 1u5t_B Defective in vacuolar p 92.5 0.19 6.4E-06 36.7 4.9 44 61-105 119-164 (169)
151 2cyy_A Putative HTH-type trans 92.2 0.063 2.2E-06 36.8 1.9 45 45-93 10-54 (151)
152 2e1c_A Putative HTH-type trans 92.1 0.08 2.7E-06 37.8 2.5 46 44-93 29-74 (171)
153 2p4w_A Transcriptional regulat 92.0 0.28 9.6E-06 36.2 5.5 43 61-103 29-75 (202)
154 2ra5_A Putative transcriptiona 91.3 0.049 1.7E-06 40.8 0.6 49 46-94 20-74 (247)
155 3k2z_A LEXA repressor; winged 91.2 0.17 5.8E-06 36.3 3.4 34 61-94 25-58 (196)
156 2vxz_A Pyrsv_GP04; viral prote 91.0 0.36 1.2E-05 35.8 5.0 42 58-99 22-63 (165)
157 1fx7_A Iron-dependent represso 90.8 0.21 7.1E-06 36.7 3.6 34 61-94 23-58 (230)
158 2o03_A Probable zinc uptake re 90.4 0.49 1.7E-05 32.0 5.0 45 59-103 25-74 (131)
159 2gqq_A Leucine-responsive regu 90.3 0.036 1.2E-06 38.7 -0.9 35 57-92 25-59 (163)
160 2wte_A CSA3; antiviral protein 90.2 0.46 1.6E-05 36.0 5.2 33 61-93 167-199 (244)
161 2xrn_A HTH-type transcriptiona 90.1 0.45 1.6E-05 35.2 5.0 35 60-94 21-55 (241)
162 1w7p_D VPS36P, YLR417W; ESCRT- 89.9 0.62 2.1E-05 40.1 6.3 53 45-97 493-552 (566)
163 2fbk_A Transcriptional regulat 89.9 0.06 2.1E-06 37.4 0.0 34 60-93 86-119 (181)
164 3hh0_A Transcriptional regulat 89.3 0.24 8.1E-06 34.9 2.8 41 60-104 4-45 (146)
165 2fe3_A Peroxide operon regulat 89.2 0.57 2E-05 32.3 4.7 45 59-103 36-85 (145)
166 3cuq_A Vacuolar-sorting protei 89.2 0.29 9.8E-06 37.8 3.3 46 57-102 165-210 (234)
167 1mkm_A ICLR transcriptional re 89.0 0.59 2E-05 34.6 4.9 34 60-93 23-56 (249)
168 2qq9_A Diphtheria toxin repres 89.0 0.36 1.2E-05 35.4 3.7 32 62-93 26-57 (226)
169 3r4k_A Transcriptional regulat 88.7 0.69 2.4E-05 34.6 5.1 44 51-94 11-55 (260)
170 2qlz_A Transcription factor PF 88.7 0.4 1.4E-05 36.4 3.8 43 61-103 26-73 (232)
171 2ve8_A FTSK, DNA translocase F 88.6 0.11 3.7E-06 33.9 0.5 58 45-102 9-66 (73)
172 3ryp_A Catabolite gene activat 88.4 0.76 2.6E-05 31.4 4.8 33 60-92 167-199 (210)
173 1bia_A BIRA bifunctional prote 88.4 0.74 2.5E-05 35.7 5.3 49 47-95 6-54 (321)
174 1mzb_A Ferric uptake regulatio 88.3 0.66 2.3E-05 31.6 4.4 45 59-103 33-82 (136)
175 2xig_A Ferric uptake regulatio 88.1 0.91 3.1E-05 31.6 5.1 44 60-103 42-90 (150)
176 2w57_A Ferric uptake regulatio 88.1 0.91 3.1E-05 31.5 5.1 45 59-103 32-81 (150)
177 2zcw_A TTHA1359, transcription 87.9 0.76 2.6E-05 31.5 4.6 32 61-92 147-178 (202)
178 1p4x_A Staphylococcal accessor 87.8 0.58 2E-05 35.4 4.2 35 60-94 174-208 (250)
179 3dv8_A Transcriptional regulat 87.8 0.86 2.9E-05 31.3 4.8 33 60-92 169-201 (220)
180 3dkw_A DNR protein; CRP-FNR, H 87.6 0.73 2.5E-05 31.9 4.4 32 61-92 179-210 (227)
181 4ev0_A Transcription regulator 87.5 0.93 3.2E-05 31.1 4.8 34 59-92 162-195 (216)
182 3gpv_A Transcriptional regulat 87.5 0.32 1.1E-05 34.1 2.4 45 56-104 10-57 (148)
183 2obp_A Putative DNA-binding pr 87.5 0.61 2.1E-05 31.2 3.7 38 56-94 33-70 (96)
184 2p5k_A Arginine repressor; DNA 87.2 1.1 3.9E-05 25.9 4.5 40 59-102 18-62 (64)
185 1hsj_A Fusion protein consisti 87.0 0.47 1.6E-05 37.4 3.4 34 60-93 420-453 (487)
186 2oz6_A Virulence factor regula 86.8 0.72 2.5E-05 31.4 3.9 33 60-92 164-196 (207)
187 2p8t_A Hypothetical protein PH 86.7 1.3 4.6E-05 33.2 5.6 51 41-93 13-63 (200)
188 2zkz_A Transcriptional repress 86.7 0.71 2.4E-05 29.6 3.6 42 61-104 42-83 (99)
189 3cta_A Riboflavin kinase; stru 86.6 1.2 4.1E-05 32.4 5.2 37 57-93 24-60 (230)
190 3d0s_A Transcriptional regulat 86.5 1.1 3.8E-05 31.1 4.8 32 61-92 178-209 (227)
191 2o0y_A Transcriptional regulat 86.4 0.99 3.4E-05 33.7 4.8 36 59-94 37-72 (260)
192 1stz_A Heat-inducible transcri 86.3 0.59 2E-05 37.0 3.6 41 55-95 31-73 (338)
193 2o0m_A Transcriptional regulat 86.1 0.14 4.9E-06 39.9 0.0 43 50-92 24-66 (345)
194 3iwz_A CAP-like, catabolite ac 86.1 0.81 2.8E-05 31.7 3.9 32 61-92 188-219 (230)
195 3f8b_A Transcriptional regulat 86.0 1.6 5.6E-05 29.0 5.3 42 62-103 27-80 (116)
196 2gau_A Transcriptional regulat 85.8 0.83 2.8E-05 31.9 3.9 33 60-92 180-212 (232)
197 1xma_A Predicted transcription 85.7 1.8 6.1E-05 30.2 5.6 43 61-103 55-109 (145)
198 1u5t_A Appears to BE functiona 85.6 0.79 2.7E-05 35.3 4.0 46 57-102 178-223 (233)
199 2g7u_A Transcriptional regulat 85.2 0.88 3E-05 33.8 4.0 44 50-93 18-62 (257)
200 3mwm_A ZUR, putative metal upt 84.9 1.6 5.3E-05 29.9 4.9 45 59-103 28-77 (139)
201 3la7_A Global nitrogen regulat 84.8 0.97 3.3E-05 32.2 3.9 32 61-92 194-225 (243)
202 3kcc_A Catabolite gene activat 84.7 1.5 5.1E-05 31.7 4.9 33 60-92 217-249 (260)
203 1r8d_A Transcription activator 84.6 0.67 2.3E-05 30.5 2.8 40 61-104 3-43 (109)
204 2hoe_A N-acetylglucosamine kin 84.5 1.4 4.8E-05 34.3 5.0 36 59-94 32-67 (380)
205 3e97_A Transcriptional regulat 84.4 1.1 3.6E-05 31.3 3.9 33 60-92 175-207 (231)
206 2ia2_A Putative transcriptiona 84.4 0.93 3.2E-05 33.9 3.8 43 51-93 26-69 (265)
207 1j5y_A Transcriptional regulat 84.2 1.1 3.7E-05 31.9 3.9 45 48-92 23-69 (187)
208 2fmy_A COOA, carbon monoxide o 84.2 1.1 3.7E-05 31.1 3.8 33 60-92 167-199 (220)
209 3b02_A Transcriptional regulat 84.0 1 3.4E-05 30.9 3.6 33 60-92 139-171 (195)
210 2qlz_A Transcription factor PF 84.0 1.2 4.2E-05 33.6 4.4 43 58-101 176-218 (232)
211 1ft9_A Carbon monoxide oxidati 83.9 0.99 3.4E-05 31.4 3.6 32 61-92 164-195 (222)
212 2pjp_A Selenocysteine-specific 83.7 0.65 2.2E-05 31.1 2.4 58 37-94 53-114 (121)
213 3e6c_C CPRK, cyclic nucleotide 83.3 1.2 4.2E-05 31.6 3.9 32 61-92 178-209 (250)
214 4esf_A PADR-like transcription 83.2 2.5 8.6E-05 28.3 5.3 43 61-103 25-77 (117)
215 3eyy_A Putative iron uptake re 83.2 1.9 6.3E-05 29.8 4.7 43 61-103 34-81 (145)
216 3mq0_A Transcriptional repress 83.1 0.82 2.8E-05 34.6 3.1 35 60-94 45-79 (275)
217 1z05_A Transcriptional regulat 83.0 1.2 4.2E-05 35.2 4.2 44 51-94 44-87 (429)
218 3i71_A Ethanolamine utilizatio 83.0 1.5 5.2E-05 28.0 3.8 33 61-93 19-51 (68)
219 3l7w_A Putative uncharacterize 83.0 3 0.0001 27.1 5.5 38 66-103 32-72 (108)
220 1zyb_A Transcription regulator 82.9 1.2 4E-05 31.4 3.6 33 60-92 186-218 (232)
221 3tdu_C Cullin-1, CUL-1; E2:E3, 82.7 2.1 7.2E-05 27.5 4.5 40 64-103 37-76 (77)
222 3u5c_T 40S ribosomal protein S 82.7 1.1 3.8E-05 32.5 3.4 23 72-94 96-118 (144)
223 3iz6_S 40S ribosomal protein S 82.6 1.2 4E-05 32.4 3.6 24 71-94 97-120 (146)
224 2zhg_A Redox-sensitive transcr 82.3 0.99 3.4E-05 31.9 3.1 43 59-105 10-52 (154)
225 1z6r_A MLC protein; transcript 82.1 1.1 3.7E-05 35.0 3.5 44 50-93 20-63 (406)
226 2esh_A Conserved hypothetical 82.1 1.4 4.8E-05 29.2 3.6 43 61-103 27-81 (118)
227 1bja_A Transcription regulator 81.9 0.79 2.7E-05 30.8 2.3 38 57-95 27-65 (95)
228 4a0z_A Transcription factor FA 81.8 0.27 9.1E-06 36.1 -0.1 48 46-93 12-59 (190)
229 2vz4_A Tipal, HTH-type transcr 81.6 0.96 3.3E-05 29.8 2.6 40 61-104 2-42 (108)
230 3lmm_A Uncharacterized protein 81.5 0.29 1E-05 41.5 0.0 54 50-104 520-573 (583)
231 4esb_A Transcriptional regulat 80.9 3.7 0.00013 27.3 5.4 43 61-103 23-75 (115)
232 2r3s_A Uncharacterized protein 80.8 1.8 6.2E-05 32.1 4.2 33 60-92 39-71 (335)
233 1p4x_A Staphylococcal accessor 80.6 1.3 4.3E-05 33.5 3.3 34 60-93 50-83 (250)
234 2jml_A DNA binding domain/tran 80.1 1.2 4.3E-05 27.7 2.6 41 60-104 5-47 (81)
235 3hhh_A Transcriptional regulat 79.9 4.1 0.00014 27.2 5.4 43 61-103 27-79 (116)
236 3qph_A TRMB, A global transcri 79.5 0.35 1.2E-05 38.3 -0.2 42 61-104 33-74 (342)
237 3fx3_A Cyclic nucleotide-bindi 79.4 2.4 8E-05 29.6 4.2 29 61-89 179-207 (237)
238 3i53_A O-methyltransferase; CO 79.2 2.2 7.6E-05 32.0 4.2 44 46-94 29-72 (332)
239 1r8e_A Multidrug-efflux transp 78.8 1.8 6.3E-05 31.8 3.6 43 59-105 4-48 (278)
240 2xzm_T RPS19E; ribosome, trans 78.4 2.3 7.9E-05 31.2 3.9 21 73-93 100-120 (155)
241 1qzz_A RDMB, aclacinomycin-10- 78.4 3.2 0.00011 31.4 5.0 44 46-94 40-83 (374)
242 3mcz_A O-methyltransferase; ad 78.3 2.2 7.7E-05 32.1 4.0 35 60-94 56-90 (352)
243 2bgc_A PRFA; bacterial infecti 77.8 2 6.7E-05 30.4 3.4 33 61-93 170-203 (238)
244 1yg2_A Gene activator APHA; vi 77.6 2.7 9.1E-05 29.6 4.0 34 61-94 16-57 (179)
245 4ets_A Ferric uptake regulatio 77.5 1.7 5.7E-05 30.7 2.9 45 59-103 47-98 (162)
246 3lst_A CALO1 methyltransferase 76.8 2.6 8.8E-05 32.1 4.0 33 60-92 55-87 (348)
247 3gwz_A MMCR; methyltransferase 76.7 2.6 8.9E-05 32.5 4.1 35 60-94 71-105 (369)
248 2ip2_A Probable phenazine-spec 76.7 2.6 8.7E-05 31.5 3.9 44 46-94 32-75 (334)
249 1q06_A Transcriptional regulat 76.1 1.8 6.3E-05 29.6 2.8 40 61-104 1-41 (135)
250 3o2p_E Cell division control p 75.9 4.5 0.00015 26.6 4.5 39 64-103 49-87 (88)
251 1x19_A CRTF-related protein; m 75.7 2.9 9.8E-05 31.8 4.0 33 61-93 65-97 (359)
252 1tw3_A COMT, carminomycin 4-O- 75.7 3.1 0.00011 31.4 4.2 42 47-93 44-85 (360)
253 3qao_A LMO0526 protein, MERR-l 75.6 2 6.8E-05 32.6 3.1 42 59-104 2-44 (249)
254 3elk_A Putative transcriptiona 75.4 4.2 0.00015 27.1 4.4 43 61-103 28-80 (117)
255 3gp4_A Transcriptional regulat 74.9 1.4 4.7E-05 30.7 1.9 40 61-104 3-43 (142)
256 3dp7_A SAM-dependent methyltra 74.8 2.7 9.3E-05 32.3 3.7 44 46-92 39-82 (363)
257 3e0j_B DNA polymerase subunit 73.3 3.6 0.00012 29.5 3.7 45 43-87 2-47 (144)
258 1zg3_A Isoflavanone 4'-O-methy 72.9 4.1 0.00014 30.9 4.3 45 46-93 34-81 (358)
259 1fp1_D Isoliquiritigenin 2'-O- 72.6 3.5 0.00012 31.6 3.8 33 61-93 63-101 (372)
260 2co5_A Viral protein F93; vira 71.9 6.8 0.00023 25.7 4.7 39 64-103 32-72 (99)
261 1tc3_C Protein (TC3 transposas 71.9 1.6 5.5E-05 22.9 1.3 28 61-88 22-49 (51)
262 1o5l_A Transcriptional regulat 71.3 0.83 2.8E-05 31.8 0.0 33 60-92 164-196 (213)
263 3rkx_A Biotin-[acetyl-COA-carb 71.3 5.8 0.0002 31.0 4.9 35 58-92 17-51 (323)
264 1fp2_A Isoflavone O-methyltran 71.2 4.9 0.00017 30.5 4.3 44 47-93 41-87 (352)
265 4hv0_A AVTR; ribbon-helix-heli 69.4 5 0.00017 27.7 3.6 35 40-86 2-37 (106)
266 1iuy_A Cullin-3 homologue; win 69.3 6.7 0.00023 25.9 4.2 40 64-103 52-91 (92)
267 1t6s_A Conserved hypothetical 68.4 2 7E-05 31.1 1.6 42 59-103 107-151 (162)
268 1lva_A Selenocysteine-specific 68.0 6 0.0002 29.6 4.2 50 47-96 142-193 (258)
269 3p9c_A Caffeic acid O-methyltr 67.4 4.6 0.00016 31.2 3.5 46 47-94 45-95 (364)
270 4a6d_A Hydroxyindole O-methylt 67.2 8.1 0.00028 29.6 4.9 48 46-96 32-79 (353)
271 3ri2_A Transcriptional regulat 66.8 14 0.00048 25.0 5.5 43 61-103 34-84 (123)
272 3u1d_A Uncharacterized protein 66.3 13 0.00044 26.6 5.5 36 59-94 44-80 (151)
273 1lva_A Selenocysteine-specific 66.3 5.3 0.00018 29.9 3.6 58 37-94 190-250 (258)
274 1b4a_A Arginine repressor; hel 65.1 6.6 0.00023 27.9 3.7 53 48-104 7-64 (149)
275 3v4g_A Arginine repressor; vib 64.4 16 0.00054 27.0 5.8 55 33-103 38-92 (180)
276 2dg6_A Putative transcriptiona 64.3 2.8 9.6E-05 31.5 1.7 40 61-104 1-41 (222)
277 2z99_A Putative uncharacterize 63.3 5.8 0.0002 30.2 3.3 33 59-94 113-145 (219)
278 3pfi_A Holliday junction ATP-d 63.1 7.6 0.00026 28.7 3.9 50 45-96 266-316 (338)
279 3l09_A Putative transcriptiona 62.4 12 0.00039 29.1 4.9 38 65-103 50-87 (266)
280 2dql_A PEX protein; circadian 61.9 20 0.00068 23.6 5.5 24 70-93 52-75 (115)
281 4g6q_A Putative uncharacterize 60.4 14 0.00047 26.2 4.7 57 46-103 23-84 (182)
282 2iut_A DNA translocase FTSK; n 60.3 1.8 6.2E-05 37.0 0.0 60 44-103 501-560 (574)
283 3lmm_A Uncharacterized protein 60.1 4.4 0.00015 34.3 2.3 43 51-93 435-482 (583)
284 2ius_A DNA translocase FTSK; n 59.0 2 6.8E-05 36.1 0.0 59 45-103 449-507 (512)
285 1ufm_A COP9 complex subunit 4; 58.5 21 0.00072 22.8 5.0 48 57-104 27-75 (84)
286 2e1n_A PEX, period extender; c 56.7 25 0.00086 24.2 5.4 24 70-93 64-87 (138)
287 1zel_A Hypothetical protein RV 55.8 9.5 0.00033 30.6 3.4 55 46-104 20-77 (298)
288 2kfs_A Conserved hypothetical 55.6 8.2 0.00028 27.8 2.8 35 58-96 29-63 (148)
289 2zfw_A PEX; five alpha-helices 54.4 18 0.00062 25.4 4.4 32 62-93 59-97 (148)
290 3l9f_A Putative uncharacterize 53.4 15 0.00051 27.0 4.0 43 61-103 50-104 (204)
291 3qyf_A Crispr-associated prote 52.1 7.6 0.00026 31.3 2.3 45 41-93 207-251 (324)
292 1jhf_A LEXA repressor; LEXA SO 50.6 18 0.00063 25.2 4.0 32 62-93 27-59 (202)
293 2jn6_A Protein CGL2762, transp 50.2 17 0.00059 22.5 3.4 47 43-89 6-52 (97)
294 1t1e_A Kumamolisin; proenzyme, 49.4 38 0.0013 28.3 6.3 60 44-103 50-114 (552)
295 3cuq_C Vacuolar protein-sortin 47.5 62 0.0021 23.6 6.5 50 47-96 111-168 (176)
296 3reo_A (ISO)eugenol O-methyltr 47.5 29 0.00099 26.6 5.0 46 47-93 46-96 (368)
297 4b4t_R RPN7, 26S proteasome re 46.6 24 0.00083 27.9 4.5 48 57-104 344-391 (429)
298 2pi2_A Replication protein A 3 46.2 4.2 0.00014 30.9 0.0 39 53-91 217-256 (270)
299 2og0_A Excisionase; protein-DN 45.4 15 0.0005 21.9 2.3 30 60-91 2-31 (52)
300 3dpl_C Cullin-5; ubiquitin, NE 44.5 27 0.00091 27.7 4.4 40 64-103 342-381 (382)
301 2k9i_A Plasmid PRN1, complete 43.6 41 0.0014 18.6 4.3 36 39-86 12-48 (55)
302 1j9i_A GPNU1 DBD;, terminase s 43.0 21 0.00072 21.1 2.9 39 60-104 2-43 (68)
303 2qen_A Walker-type ATPase; unk 42.3 29 0.001 25.0 4.1 33 61-93 296-333 (350)
304 3edy_A Tripeptidyl-peptidase 1 41.1 61 0.0021 27.2 6.3 60 44-103 38-103 (544)
305 1xb4_A VPS25, hypothetical 23. 41.0 64 0.0022 24.0 5.8 51 46-96 134-192 (202)
306 1fse_A GERE; helix-turn-helix 39.9 25 0.00084 20.2 2.8 25 62-86 28-52 (74)
307 1z4h_A TORI, TOR inhibition pr 39.0 34 0.0012 20.2 3.4 44 55-103 5-49 (66)
308 1cf7_A Protein (transcription 38.7 45 0.0015 21.0 4.0 42 59-100 29-71 (76)
309 2nqb_D Histone H2B; nucleosome 38.7 25 0.00085 24.7 3.0 44 40-83 60-111 (123)
310 1pdn_C Protein (PRD paired); p 37.5 28 0.00094 21.6 2.9 48 43-92 18-65 (128)
311 2jpc_A SSRB; DNA binding prote 37.1 27 0.00092 19.5 2.6 26 61-86 14-39 (61)
312 1jko_C HIN recombinase, DNA-in 35.9 7.3 0.00025 20.7 -0.1 23 61-83 22-44 (52)
313 3k9t_A Putative peptidase; str 35.0 34 0.0012 28.6 3.8 31 62-92 404-434 (435)
314 3lap_A Arginine repressor; arg 35.0 79 0.0027 22.8 5.4 58 30-103 22-79 (170)
315 2fq3_A Transcription regulator 34.6 31 0.0011 23.3 2.9 46 45-91 46-98 (104)
316 3txn_A 26S proteasome regulato 34.4 63 0.0021 26.0 5.2 48 56-103 312-359 (394)
317 2elh_A CG11849-PA, LD40883P; s 33.6 40 0.0014 20.7 3.1 26 61-86 39-64 (87)
318 1k78_A Paired box protein PAX5 33.0 34 0.0012 22.5 2.9 48 43-92 33-80 (149)
319 1nd9_A Translation initiation 32.7 41 0.0014 18.2 2.8 26 61-89 3-28 (49)
320 1hst_A Histone H5; chromosomal 32.6 64 0.0022 20.8 4.1 30 74-103 47-76 (90)
321 2o8x_A Probable RNA polymerase 32.4 39 0.0013 19.0 2.8 24 61-84 32-55 (70)
322 2l0k_A Stage III sporulation p 32.0 11 0.00039 24.6 0.4 23 61-83 21-43 (93)
323 1fsh_A Dishevelled-1; three-he 31.9 29 0.001 22.9 2.4 25 73-97 69-93 (105)
324 1x3u_A Transcriptional regulat 31.9 39 0.0013 19.7 2.8 27 60-86 31-57 (79)
325 2do7_A Cullin-4B, CUL-4B; heli 31.3 68 0.0023 21.4 4.2 36 70-105 61-96 (101)
326 1y6u_A XIS, excisionase from t 31.1 52 0.0018 20.2 3.4 30 53-82 7-38 (70)
327 1pm6_A Excisionase; antiparall 30.9 27 0.00092 22.1 2.0 29 60-90 2-30 (72)
328 3vc8_A RNA-directed RNA polyme 30.9 34 0.0012 23.1 2.6 23 35-57 9-31 (94)
329 2lnb_A Z-DNA-binding protein 1 30.8 74 0.0025 20.8 4.1 47 46-92 19-66 (80)
330 3kfw_X Uncharacterized protein 30.3 58 0.002 24.6 4.1 32 62-93 25-56 (247)
331 1hqc_A RUVB; extended AAA-ATPa 30.1 87 0.003 22.5 4.9 49 44-93 249-298 (324)
332 3gzf_A Replicase polyprotein 1 29.8 36 0.0012 23.0 2.6 22 35-56 14-35 (96)
333 2jrt_A Uncharacterized protein 29.1 32 0.0011 22.5 2.2 34 59-92 48-81 (95)
334 2dul_A N(2),N(2)-dimethylguano 29.1 1E+02 0.0035 24.2 5.5 61 46-106 307-367 (378)
335 1t6s_A Conserved hypothetical 27.4 1.5E+02 0.005 21.1 5.7 44 61-105 23-74 (162)
336 2qm3_A Predicted methyltransfe 26.6 61 0.0021 24.8 3.7 32 61-92 56-87 (373)
337 3ez9_A Para; DNA binding, wing 26.4 67 0.0023 24.7 3.9 46 50-95 32-78 (403)
338 1je8_A Nitrate/nitrite respons 26.3 53 0.0018 19.9 2.8 26 61-86 37-62 (82)
339 1ucr_A Protein DSVD; dissimila 26.3 1.3E+02 0.0045 19.5 4.7 38 65-103 26-64 (78)
340 2cpg_A REPA protein, transcrip 26.0 81 0.0028 16.7 4.1 35 40-86 6-41 (45)
341 2qby_A CDC6 homolog 1, cell di 25.6 55 0.0019 23.8 3.2 31 64-94 316-349 (386)
342 1uxc_A FRUR (1-57), fructose r 25.2 47 0.0016 19.9 2.3 19 71-89 29-47 (65)
343 3htu_A Vacuolar protein-sortin 24.9 1.4E+02 0.0048 19.1 6.7 49 47-95 14-70 (79)
344 2p7v_B Sigma-70, RNA polymeras 24.9 72 0.0025 18.3 3.1 28 59-86 24-51 (68)
345 2dt5_A AT-rich DNA-binding pro 24.9 47 0.0016 24.3 2.7 39 46-84 12-52 (211)
346 4asn_A TUBR; transcription, tu 24.8 1.1E+02 0.0039 20.4 4.3 47 57-103 31-77 (101)
347 3qq6_A HTH-type transcriptiona 24.8 49 0.0017 19.6 2.3 41 35-75 27-68 (78)
348 1ldj_A Cullin homolog 1, CUL-1 24.5 82 0.0028 27.2 4.5 58 46-103 697-759 (760)
349 2v9v_A Selenocysteine-specific 24.3 1.5E+02 0.005 19.0 5.9 51 42-92 58-121 (135)
350 1gng_X Frattide, glycogen synt 24.0 32 0.0011 19.8 1.2 28 62-89 11-38 (39)
351 4ef1_A Pheromone COB1/lipoprot 24.0 65 0.0022 24.5 3.4 34 52-93 96-130 (246)
352 3maj_A DNA processing chain A; 23.5 1.2E+02 0.0042 24.5 5.1 48 48-96 330-377 (382)
353 2vqe_N 30S ribosomal protein S 23.5 17 0.00059 22.4 0.0 27 66-96 33-59 (61)
354 2rn7_A IS629 ORFA; helix, all 23.4 64 0.0022 20.1 2.8 29 61-89 31-59 (108)
355 2edu_A Kinesin-like protein KI 22.7 40 0.0014 21.4 1.7 52 39-90 14-66 (98)
356 3ix7_A Uncharacterized protein 22.6 39 0.0013 23.5 1.8 56 38-93 11-77 (134)
357 2rnj_A Response regulator prot 21.7 68 0.0023 19.6 2.6 26 61-86 45-70 (91)
358 3rss_A Putative uncharacterize 21.7 2.4E+02 0.0084 23.2 6.7 66 38-104 348-423 (502)
359 2k27_A Paired box protein PAX- 21.6 35 0.0012 22.8 1.3 43 48-93 92-144 (159)
360 3u3w_A Transcriptional activat 21.6 58 0.002 22.9 2.5 44 31-75 18-61 (293)
361 3hug_A RNA polymerase sigma fa 21.2 76 0.0026 19.3 2.8 22 61-82 54-75 (92)
362 2z99_A Putative uncharacterize 21.1 2.1E+02 0.0071 21.5 5.7 44 61-105 31-80 (219)
363 4afj_X Proto-oncogene FRAT1; t 20.9 19 0.00064 19.7 -0.2 27 63-89 3-29 (30)
364 1rr7_A Middle operon regulator 20.7 1.5E+02 0.0051 20.1 4.4 35 50-87 85-119 (129)
365 2dce_A KIAA1915 protein; swirm 20.7 64 0.0022 21.8 2.5 47 45-92 47-102 (111)
366 2x48_A CAG38821; archeal virus 20.3 55 0.0019 17.8 1.8 22 61-82 32-53 (55)
367 1bm9_A RTP, TER, replication t 20.1 1.9E+02 0.0064 19.9 4.9 27 69-95 49-75 (122)
368 3c57_A Two component transcrip 20.0 82 0.0028 19.5 2.8 25 61-85 43-67 (95)
No 1
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=100.00 E-value=4.8e-55 Score=308.80 Aligned_cols=107 Identities=43% Similarity=0.737 Sum_probs=69.7
Q ss_pred CCCCCCCCCCCCCCccccCCCcccccccCchhhHHhhhccceeCHHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHH
Q 033931 1 MAPKKDKAPPPASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRA 80 (108)
Q Consensus 1 M~~k~~~~k~~~~~~~~~~g~k~~KKKWsKgk~keK~nn~V~~dk~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~ 80 (108)
||||+|+++++++++ +++||+++||||||||++||+||+|+||++|||+|++|||+|+|||||+|||||+|+|||||++
T Consensus 1 M~pK~~~sk~~k~~~-a~~ggk~~KKKWsKgk~kdK~nn~VlfDk~t~dkl~KEVpk~KlITpsvlseRlkI~gSLAR~a 79 (108)
T 3u5c_Z 1 MPPKQQLSKAAKAAA-ALAGGKKSKKKWSKKSMKDRAQHAVILDQEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIA 79 (108)
T ss_dssp ------------------------------------CCSCSSCTTHHHHHHHHHCSSCSSBSHHHHHHTTCCCTTHHHHH
T ss_pred CCCccccCHHHHHHH-HhcCCCccccccccccHHHHhhcceeeCHHHHHHHHHHccCCeEEeHHHhhhhhhhhHHHHHHH
Confidence 999988888888875 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeeEecccceeEEEecccCC
Q 033931 81 IKDLMARGSIRMISAHASQQIYTRATNT 108 (108)
Q Consensus 81 Lr~L~~kGlIk~V~k~~~q~IYtr~~~~ 108 (108)
||||+++|+|++|++||+|.||||++++
T Consensus 80 LreL~~kGlIk~V~kh~~q~IYTr~~~~ 107 (108)
T 3u5c_Z 80 LRHLEKEGIIKPISKHSKQAIYTRATAS 107 (108)
T ss_dssp HHHHSSSSSCEEEECCSSCCEEECCC--
T ss_pred HHHHHHCCCEEEEecCCCEEEEecCccC
Confidence 9999999999999999999999999864
No 2
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=9.3e-55 Score=307.33 Aligned_cols=107 Identities=77% Similarity=1.121 Sum_probs=94.9
Q ss_pred CCCC-CCCCCCCCCCccccCCCcccccccCchhhHHhhhccceeCHHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHH
Q 033931 1 MAPK-KDKAPPPASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARR 79 (108)
Q Consensus 1 M~~k-~~~~k~~~~~~~~~~g~k~~KKKWsKgk~keK~nn~V~~dk~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~ 79 (108)
|||| +|++++++++ ++++||+++||||||||++||+||+|+||++|||+|++|||+|+|||||+|||||+|+|||||+
T Consensus 1 m~pk~~~~~k~~~~~-~a~~ggk~~KKKWsKgk~kdk~nn~Vl~Dk~t~dkl~KEVpk~KlITpsvlseRlkI~gSLAR~ 79 (108)
T 3iz6_V 1 MAPKKDKAPPPSSKP-AKSGGGKQKKKKWSKGKQKEKVNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLRINGSLARQ 79 (108)
T ss_dssp --------CCCCCCC-CTTCCCCCCCCSCCCCCCSHHHHSHHHHSSHHHHHHHHHHHHHSSEEEHHHHHHHHTCCHHHHH
T ss_pred CCCcccccCHHHHHH-HHhcCCCccccccccccHHHHhcCcEeECHHHHHHHHHHccCCeEEeHHHHHhhhcccHHHHHH
Confidence 9999 5555555555 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCeeEecccceeEEEecccCC
Q 033931 80 AIKDLMARGSIRMISAHASQQIYTRATNT 108 (108)
Q Consensus 80 ~Lr~L~~kGlIk~V~k~~~q~IYtr~~~~ 108 (108)
+||||+++|+|++|++||+|.||||++++
T Consensus 80 aLreL~~kGlIk~V~kh~~q~IYTr~~~~ 108 (108)
T 3iz6_V 80 AIKDLESRGAIRVVSVHSSQLIYTRATNA 108 (108)
T ss_dssp HHHHHHHHHTSCEECCCTTSCCEEESCCC
T ss_pred HHHHHHHCCCEEEEecCCCEEEEecCcCC
Confidence 99999999999999999999999999874
No 3
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=100.00 E-value=2.9e-49 Score=290.20 Aligned_cols=105 Identities=28% Similarity=0.505 Sum_probs=85.4
Q ss_pred CCCCC-CCCCCCCCCccccCCCcccccccCchhhHHhhhccceeCHHHHHHHHhhCCCC-eeechhhhhhhhcccHHHHH
Q 033931 1 MAPKK-DKAPPPASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKF-KLITPSILSDRLRINGSLAR 78 (108)
Q Consensus 1 M~~k~-~~~k~~~~~~~~~~g~k~~KKKWsKgk~keK~nn~V~~dk~t~dKl~KEVpk~-k~ITps~vserlkI~~SlAr 78 (108)
||||. ++++++++ ++++ +|+++||||||||+|||+||+|+||++|||+|++|||+| +|||||+|||||+||+||||
T Consensus 4 mppk~~~k~k~~~~-~~a~-~gk~kKKKWSKgKvkdK~nn~VlfDk~tydKL~KEVpk~gKlITpsvlseRlkI~gSLAR 81 (143)
T 2xzm_8 4 QPAAGQKKTKEAIA-KAAQ-AKKGGKKKWTKGKAKDKVNHAVFIEKKNVESIINNPSKVGKVLTVSTVVEKLKVNGSLAR 81 (143)
T ss_dssp ---------------------CCCCSSCCCSSCCCCCCCCBSCCCHHHHHHHHTCCTTSCSEECHHHHHHHHCBCHHHHH
T ss_pred CCCcccccchhHHH-Hhhc-cCccccCCcccchHHHHHhcceeecHHHHHHHHHHhcccceeecHHHHHHHhcchHHHHH
Confidence 89995 55544444 3344 488889999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHcCCeeEecccceeEEEecccC
Q 033931 79 RAIKDLMARGSIRMISAHASQQIYTRATN 107 (108)
Q Consensus 79 ~~Lr~L~~kGlIk~V~k~~~q~IYtr~~~ 107 (108)
++||||+++|+|++|++||+|.||||+++
T Consensus 82 kaLreL~~kGlIk~V~kh~~q~IYTra~~ 110 (143)
T 2xzm_8 82 QLMRTMADRKLVEKVAKNGNQWVYSVIGG 110 (143)
T ss_dssp HHHHHHHHTTSEEEEEEETTEEEEEETTC
T ss_pred HHHHHHHHCCCEEEEecCCCeEEEecCCc
Confidence 99999999999999999999999999874
No 4
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=97.41 E-value=8.8e-05 Score=48.43 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=41.9
Q ss_pred HHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 48 YDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 48 ~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
++.|+..+.....+|.+.||+.|+|+-+..|+-|.+|+++|+|..+
T Consensus 4 L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 4 LIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 4567777777789999999999999999999999999999999998
No 5
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=97.28 E-value=0.00021 Score=48.08 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=43.2
Q ss_pred HHHHHhhC-CCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecc-cceeEE
Q 033931 48 YDKLLSEA-PKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISA-HASQQI 101 (108)
Q Consensus 48 ~dKl~KEV-pk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k-~~~q~I 101 (108)
.+.|+.++ |+..+.|...||++|+|+-+..|.+|+.|++.|+|..... +++..|
T Consensus 30 ~~~I~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V 85 (102)
T 2b0l_A 30 IEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYI 85 (102)
T ss_dssp HHHHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEE
T ss_pred HHHHHhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEE
Confidence 56666555 4567779999999999999999999999999999987663 244444
No 6
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=97.20 E-value=0.00014 Score=48.68 Aligned_cols=47 Identities=19% Similarity=0.154 Sum_probs=41.7
Q ss_pred HHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 48 YDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 48 ~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
++.|+..+.....+|++.||+.|+|+-+..|+-|.+|+++|+|..+.
T Consensus 4 L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 4 LMEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 45666666667889999999999999999999999999999999984
No 7
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=97.16 E-value=0.00022 Score=46.48 Aligned_cols=45 Identities=11% Similarity=0.051 Sum_probs=38.4
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
--+|...||+.|+|+-+-+|+-|..|+++|+|..+-..++...+.
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ggr~~~~~~ 67 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNAGKGVPGLW 67 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESCSSSSCCEE
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCCCCcHHHH
Confidence 348999999999999999999999999999999987655544443
No 8
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=96.87 E-value=0.0025 Score=43.57 Aligned_cols=51 Identities=20% Similarity=0.159 Sum_probs=42.3
Q ss_pred HHHHHHHHhhC------CCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecc
Q 033931 45 QATYDKLLSEA------PKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISA 95 (108)
Q Consensus 45 k~t~dKl~KEV------pk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k 95 (108)
...|+.|...| |+.++-|-..||++|+|+-+..|.+|+.|++.|+|....+
T Consensus 16 ~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g 72 (125)
T 3neu_A 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG 72 (125)
T ss_dssp HHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecC
Confidence 44566666655 4567778999999999999999999999999999987654
No 9
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.78 E-value=0.0037 Score=39.27 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=35.4
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEec-ccceeEEEe
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMIS-AHASQQIYT 103 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~-k~~~q~IYt 103 (108)
+|...||+.++|+-+-+++.|+.|++.|+|.... +..+...|.
T Consensus 15 ~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~ 58 (81)
T 2htj_A 15 GKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWF 58 (81)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEE
Confidence 8999999999999999999999999999998652 333333443
No 10
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=96.67 E-value=0.0027 Score=42.15 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=37.4
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe--cccceeEEEe
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMI--SAHASQQIYT 103 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V--~k~~~q~IYt 103 (108)
=||+..|++++++.-+..-++|+.|+++|+|+.+ ..+.+..+|.
T Consensus 36 gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~~~~~~~~rKvy~ 81 (91)
T 2dk5_A 36 GIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYM 81 (91)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCSSCCEEE
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCcEEEE
Confidence 5999999999999999999999999999999977 3334555654
No 11
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=96.63 E-value=0.0032 Score=40.49 Aligned_cols=43 Identities=9% Similarity=0.055 Sum_probs=35.5
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEE
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIY 102 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IY 102 (108)
.-+|++.||+++++.-|-.-++|..|+++|+| ....++|...|
T Consensus 29 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv-~~~~d~R~~~v 71 (95)
T 2qvo_A 29 NDVYIQYIASKVNSPHSYVWLIIKKFEEAKMV-ECELEGRTKII 71 (95)
T ss_dssp CCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSE-EEEEETTEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCc-cCCCCCCeEEE
Confidence 35899999999999999999999999999999 44445554443
No 12
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=96.60 E-value=0.0038 Score=41.86 Aligned_cols=49 Identities=16% Similarity=0.141 Sum_probs=39.4
Q ss_pred HHHHHHHhhC------CCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 46 ATYDKLLSEA------PKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 46 ~t~dKl~KEV------pk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
..|+.|...| |..++-|...||++|+|+-+..|.+|+.|++.|+|..+.
T Consensus 13 ~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~ 67 (113)
T 3tqn_A 13 QLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRR 67 (113)
T ss_dssp HHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 4555555543 345666999999999999999999999999999987654
No 13
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.57 E-value=0.0031 Score=41.32 Aligned_cols=57 Identities=9% Similarity=0.098 Sum_probs=44.8
Q ss_pred HHHHHHHHhhCCCCeeechhhhhhhhcccHH-HHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 45 QATYDKLLSEAPKFKLITPSILSDRLRINGS-LARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 45 k~t~dKl~KEVpk~k~ITps~vserlkI~~S-lAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
.++-++|+.-+.+.-=.|...||+.|+|+.+ -+|+.|..|++.|+|.....++- +|.
T Consensus 10 ~~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP--~w~ 67 (79)
T 1xmk_A 10 AEIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPP--IWH 67 (79)
T ss_dssp HHHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSC--EEE
T ss_pred hhHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecCCCCC--CeE
Confidence 4566666655555555899999999999999 99999999999999986644442 665
No 14
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=96.48 E-value=0.0049 Score=42.29 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=40.4
Q ss_pred HHHHHHHhhC------CCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 46 ATYDKLLSEA------PKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 46 ~t~dKl~KEV------pk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
..|+.|...| |+.+|-|-..||++|+|+-+-.|.||+.|+..|+|...-
T Consensus 18 QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~ 72 (134)
T 4ham_A 18 QIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVK 72 (134)
T ss_dssp HHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEc
Confidence 3455555443 667888999999999999999999999999999997654
No 15
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.44 E-value=0.0083 Score=37.65 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=43.6
Q ss_pred HHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 47 TYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 47 t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
+--+|+..+-...-+|+..||++++|+-|-..+.|+.|++.|+|..... ++...|.
T Consensus 25 ~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~-~r~~~y~ 80 (99)
T 3cuo_A 25 KRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRD-AQRILYS 80 (99)
T ss_dssp HHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEEC-SSCEEEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec-CCEEEEE
Confidence 3344555554444689999999999999999999999999999988753 4445554
No 16
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=96.34 E-value=0.0076 Score=37.93 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=33.5
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
.-+|+..||+.++|.-+-..++|+.|++.|+|....
T Consensus 35 ~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 35 KPITSEELADIFKLSKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeec
Confidence 348999999999999999999999999999999874
No 17
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=96.24 E-value=0.0071 Score=37.71 Aligned_cols=45 Identities=13% Similarity=0.229 Sum_probs=38.8
Q ss_pred eeechhhhhhhh-----cccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 59 KLITPSILSDRL-----RINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 59 k~ITps~vserl-----kI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
.-+|...|++++ +|..+-..+.|+.|++.|+|..+....+...|-
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y~ 81 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFE 81 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEee
Confidence 368999999999 999999999999999999999987655555563
No 18
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=96.22 E-value=0.0043 Score=41.18 Aligned_cols=43 Identities=26% Similarity=0.344 Sum_probs=36.3
Q ss_pred HHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 51 LLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 51 l~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
++..+.... +|++.||+++++.-|-..++|+.|+++|+|....
T Consensus 43 iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 43 ILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 444555556 9999999999999999999999999999998764
No 19
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=96.21 E-value=0.0097 Score=39.30 Aligned_cols=45 Identities=20% Similarity=0.112 Sum_probs=37.9
Q ss_pred HHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 48 YDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 48 ~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
+-.|+.-+... ++++.||+.++++-+.++..|+.|+++|+|....
T Consensus 10 i~~IL~~i~~~--~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~ 54 (95)
T 1r7j_A 10 IQAILEACKSG--SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEG 54 (95)
T ss_dssp HHHHHHHHTTC--BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHcC--CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEC
Confidence 33455555543 9999999999999999999999999999998863
No 20
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=96.18 E-value=0.011 Score=44.49 Aligned_cols=44 Identities=9% Similarity=0.231 Sum_probs=37.0
Q ss_pred CCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEE
Q 033931 56 PKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQI 101 (108)
Q Consensus 56 pk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~I 101 (108)
|+.++=|-..||++|+|+-...|+||++|+++|+|.. ++++..|
T Consensus 32 ~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~--~g~Gt~V 75 (248)
T 3f8m_A 32 IGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER--RGRTTVV 75 (248)
T ss_dssp TTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE--ETTEEEE
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe--CCCEEEE
Confidence 4456669999999999999999999999999999988 4444433
No 21
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=96.17 E-value=0.012 Score=36.60 Aligned_cols=45 Identities=13% Similarity=0.198 Sum_probs=37.9
Q ss_pred eechhhhhhhhc----ccHHHHHHHHHHHHHcCCeeEecccceeEEEecc
Q 033931 60 LITPSILSDRLR----INGSLARRAIKDLMARGSIRMISAHASQQIYTRA 105 (108)
Q Consensus 60 ~ITps~vserlk----I~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr~ 105 (108)
-+|+..|+++++ +.-|-...+|+.|+++|+|..... ++..+|...
T Consensus 23 ~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~-gr~~~y~~~ 71 (82)
T 1p6r_A 23 SINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKE-GRVFVYTPN 71 (82)
T ss_dssp SEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEES
T ss_pred CCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEec-CCEEEEEee
Confidence 489999999998 578899999999999999998754 556788654
No 22
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=96.16 E-value=0.0093 Score=40.89 Aligned_cols=51 Identities=24% Similarity=0.227 Sum_probs=40.2
Q ss_pred HHHHHHHHhhC------CCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecc
Q 033931 45 QATYDKLLSEA------PKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISA 95 (108)
Q Consensus 45 k~t~dKl~KEV------pk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k 95 (108)
..+|+.|...| |+.++-|...||++|+|+-+..|.+|+.|+..|+|....+
T Consensus 14 ~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g 70 (126)
T 3by6_A 14 LQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPG 70 (126)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 34555555544 3445569999999999999999999999999999976543
No 23
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=96.15 E-value=0.0032 Score=41.10 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=39.8
Q ss_pred HHHHHHHHh---hCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 45 QATYDKLLS---EAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 45 k~t~dKl~K---EVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
.++..+|+. |.+-=+-+|...||++|+|.-+-.++.|..|++.|+|..+.
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g 61 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA 61 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEES
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC
Confidence 344444443 44433479999999999999999999999999999999885
No 24
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=96.05 E-value=0.0098 Score=39.44 Aligned_cols=50 Identities=12% Similarity=0.057 Sum_probs=40.8
Q ss_pred HHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEeccc
Q 033931 46 ATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAH 96 (108)
Q Consensus 46 ~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~ 96 (108)
++-.+|+.-....- +|...||++|+|+-+-.|+-|..|++.|+|.....+
T Consensus 17 ~~~~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~ 66 (82)
T 1oyi_A 17 EIVCEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDI 66 (82)
T ss_dssp HHHHHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSS
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCC
Confidence 55666654444333 999999999999999999999999999999887544
No 25
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=96.02 E-value=0.0053 Score=42.07 Aligned_cols=51 Identities=10% Similarity=0.094 Sum_probs=40.7
Q ss_pred HHHHHHHHhhC------CCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecc
Q 033931 45 QATYDKLLSEA------PKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISA 95 (108)
Q Consensus 45 k~t~dKl~KEV------pk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k 95 (108)
..+|+.|...| |+.++-|-..||++|+|+-+-.|.||+.|++.|+|....+
T Consensus 14 ~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~ 70 (126)
T 3ic7_A 14 LQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRG 70 (126)
T ss_dssp THHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETT
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEcC
Confidence 45677776665 3456668899999999999999999999999999977643
No 26
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=96.02 E-value=0.016 Score=43.01 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=41.9
Q ss_pred HHHHHHHHhhC------CCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecc
Q 033931 45 QATYDKLLSEA------PKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISA 95 (108)
Q Consensus 45 k~t~dKl~KEV------pk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k 95 (108)
...|+.|...| |+.+| +-..||++|+|+-+--|.||+.|+..|+|...-+
T Consensus 31 ~~v~~~l~~~I~~g~l~pG~~L-~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~ 86 (239)
T 2hs5_A 31 TRVAGILRDAIIDGTFRPGARL-SEPDICAALDVSRNTVREAFQILIEDRLVAHELN 86 (239)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEE-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHHcCCCCCcCEe-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 45666666554 66788 9999999999999999999999999999987643
No 27
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=96.01 E-value=0.0035 Score=40.90 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=40.5
Q ss_pred CHHHHHHHHhhCCC------CeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 44 DQATYDKLLSEAPK------FKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 44 dk~t~dKl~KEVpk------~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
-+.+++.|...|-. ..+-|...||++|+|+-+..|++|+.|++.|+|..+.
T Consensus 13 ~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 13 YADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEET
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 34566666665544 3444999999999999999999999999999997653
No 28
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=95.98 E-value=0.031 Score=34.89 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=32.5
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
+|++.||+.++++-+-..+.|+.|+++|+|....
T Consensus 35 ~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 35 MRVSEIARELDLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 8999999999999999999999999999998874
No 29
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=95.93 E-value=0.016 Score=42.21 Aligned_cols=51 Identities=14% Similarity=0.196 Sum_probs=41.3
Q ss_pred HHHHHHHHhhC------CCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecc
Q 033931 45 QATYDKLLSEA------PKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISA 95 (108)
Q Consensus 45 k~t~dKl~KEV------pk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k 95 (108)
...|+.|...| |+.++=|-..||++|+|+-+-.|.||+.|+..|+|....+
T Consensus 10 ~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~g 66 (239)
T 1hw1_A 10 GFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHG 66 (239)
T ss_dssp HHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEecC
Confidence 34555555554 5566669999999999999999999999999999987543
No 30
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=95.92 E-value=0.022 Score=37.91 Aligned_cols=44 Identities=11% Similarity=0.111 Sum_probs=38.8
Q ss_pred HHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 50 KLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 50 Kl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
.++..+-...-+|++.||+++++.-|-.-++|+.|+++|+|...
T Consensus 40 ~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 83 (140)
T 3hsr_A 40 IVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRT 83 (140)
T ss_dssp HHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEec
Confidence 34555656677999999999999999999999999999999987
No 31
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=95.91 E-value=0.014 Score=38.46 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=34.1
Q ss_pred CeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 58 FKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 58 ~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
..-+|++.||+++++.-|-...+|+.|+++|+|....
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeec
Confidence 4558999999999999999999999999999999873
No 32
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=95.89 E-value=0.022 Score=36.37 Aligned_cols=44 Identities=23% Similarity=0.222 Sum_probs=39.7
Q ss_pred HHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 51 LLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 51 l~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
++.+-+.-.-+|+..||++++|.-+-.++.|..|+++|+|..+.
T Consensus 22 ~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 22 FLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC
Confidence 46677766679999999999999999999999999999999885
No 33
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=95.88 E-value=0.0081 Score=38.04 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=37.6
Q ss_pred CHHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 44 DQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 44 dk~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
|+++||=|.. +-=+|-.+-++.+|+|.=..--.+|+.|+++|||++
T Consensus 12 e~~lL~yIr~---sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 12 ERELLDYIVN---NGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHH---TTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHH---cCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCeec
Confidence 4444444432 236899999999999999999999999999999986
No 34
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=95.86 E-value=0.016 Score=38.09 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=32.6
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
-+|++.||+++++.-+-.-++|+.|+++|+|...
T Consensus 47 ~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 47 GLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 5899999999999999999999999999999987
No 35
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=95.85 E-value=0.016 Score=37.88 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=37.1
Q ss_pred eechhhhhhhhc----ccHHHHHHHHHHHHHcCCeeEecccceeEEEecc
Q 033931 60 LITPSILSDRLR----INGSLARRAIKDLMARGSIRMISAHASQQIYTRA 105 (108)
Q Consensus 60 ~ITps~vserlk----I~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr~ 105 (108)
-+|++.|+++++ ++-|-..++|+.|+++|+|..... .+..+|..-
T Consensus 24 ~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~-~rr~~~~~l 72 (123)
T 1okr_A 24 YASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD-NKIFQYYSL 72 (123)
T ss_dssp SEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE-TTEEEEEES
T ss_pred CcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEec-CCeEEEEEe
Confidence 489999999999 779999999999999999998754 444555443
No 36
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=95.85 E-value=0.016 Score=37.90 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=32.9
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
-+|++.||++++++-+-..++|+.|+++|+|....
T Consensus 45 ~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~ 79 (142)
T 3bdd_A 45 PLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKR 79 (142)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 38999999999999999999999999999998873
No 37
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=95.83 E-value=0.016 Score=37.37 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=36.1
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
+|++.||++++++-+-..+.|+.|++.|+|..... ++...|.
T Consensus 35 ~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~-gr~~~y~ 76 (114)
T 2oqg_A 35 QSASSLATRLPVSRQAIAKHLNALQACGLVESVKV-GREIRYR 76 (114)
T ss_dssp BCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec-CCEEEEE
Confidence 79999999999999999999999999999987654 3444554
No 38
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=95.82 E-value=0.013 Score=40.42 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=39.9
Q ss_pred HHHHHHHhhC------CCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecc
Q 033931 46 ATYDKLLSEA------PKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISA 95 (108)
Q Consensus 46 ~t~dKl~KEV------pk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k 95 (108)
.+|+.|...| |+.++-|-..||++|+|+-+..|.+|+.|+..|+|....+
T Consensus 8 ~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g 63 (129)
T 2ek5_A 8 QIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRG 63 (129)
T ss_dssp HHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETT
T ss_pred HHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecC
Confidence 4455555443 4556669999999999999999999999999999977543
No 39
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=95.78 E-value=0.025 Score=36.05 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=44.5
Q ss_pred HHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEec
Q 033931 46 ATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTR 104 (108)
Q Consensus 46 ~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr 104 (108)
++--+|+..+-. .-+|.+.|++.++|.-|...+-|+.|++.|+|..... .+...|.-
T Consensus 23 ~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~-g~~~~y~l 79 (98)
T 3jth_A 23 ERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKE-AQTVYYTL 79 (98)
T ss_dssp HHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECC-TTCCEEEE
T ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe-CCEEEEEE
Confidence 344456666655 5689999999999999999999999999999987643 44555653
No 40
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=95.78 E-value=0.019 Score=37.62 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=36.0
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec--ccceeEEE
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMIS--AHASQQIY 102 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~--k~~~q~IY 102 (108)
-+|++.||++++++-+-.-++|+.|+++|+|.... .++|...|
T Consensus 48 ~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~ 92 (138)
T 1jgs_A 48 CITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLV 92 (138)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEE
T ss_pred CCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCceeEe
Confidence 37999999999999999999999999999999873 34444433
No 41
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=95.76 E-value=0.024 Score=35.40 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=36.6
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec--ccceeEEEe
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS--AHASQQIYT 103 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~--k~~~q~IYt 103 (108)
.-+|++.||+.++++-|-.-+.|+.|++.|+|.... ..++...|.
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~ 75 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVE 75 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEE
Confidence 358999999999999999999999999999998643 234444443
No 42
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=95.74 E-value=0.014 Score=38.11 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=31.7
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
+|...||+.|+|+-+-.+.+|+.|++.|+|...
T Consensus 34 ~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 34 MTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp BCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 699999999999999999999999999999876
No 43
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=95.73 E-value=0.021 Score=36.31 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=36.4
Q ss_pred Ceeechhhh----hhhhcccHHHHHHHHHHHHHcCCeeEecccceeEE
Q 033931 58 FKLITPSIL----SDRLRINGSLARRAIKDLMARGSIRMISAHASQQI 101 (108)
Q Consensus 58 ~k~ITps~v----serlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~I 101 (108)
..-+|++.| |++++++-+-.-++|+.|+++|+|......+...+
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~ 67 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRL 67 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEE
Confidence 345799999 99999999999999999999999988754444333
No 44
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=95.71 E-value=0.019 Score=37.65 Aligned_cols=35 Identities=11% Similarity=0.064 Sum_probs=32.9
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
-+|++.||+.++++-+-..++|+.|+++|+|....
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeC
Confidence 48999999999999999999999999999998873
No 45
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=95.70 E-value=0.017 Score=38.29 Aligned_cols=36 Identities=11% Similarity=0.060 Sum_probs=33.4
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
.-+|++.||+++++.-|-.-++|+.|+++|+|....
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccC
Confidence 458999999999999999999999999999998873
No 46
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=95.70 E-value=0.024 Score=38.31 Aligned_cols=48 Identities=25% Similarity=0.426 Sum_probs=37.7
Q ss_pred CHHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 44 DQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 44 dk~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
+-..|.-|... +. ..+|++.||+++++.-|-..+.|+.|+++|+|...
T Consensus 28 e~~il~~L~~~-~~-~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 28 DLNVMKSFLNE-PD-RWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHS-TT-CCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHC-CC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 33445555432 22 13899999999999999999999999999999875
No 47
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=95.67 E-value=0.024 Score=42.43 Aligned_cols=39 Identities=18% Similarity=0.363 Sum_probs=34.7
Q ss_pred CCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 56 PKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 56 pk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
|+.++=|-..||++|+|+-+..|+||+.|+++|+|....
T Consensus 30 ~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 68 (243)
T 2wv0_A 30 PDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLK 68 (243)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred CcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEeC
Confidence 456676999999999999999999999999999997654
No 48
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=95.67 E-value=0.016 Score=42.60 Aligned_cols=48 Identities=27% Similarity=0.265 Sum_probs=40.5
Q ss_pred HHHHHHHHhhC------CCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 45 QATYDKLLSEA------PKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 45 k~t~dKl~KEV------pk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
+..|+.|...| |+.++-+-..||++|+|+-+-.|.||+.|+..|+|..
T Consensus 7 ~~v~~~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 7 ESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp HHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 45566666555 5667778889999999999999999999999999986
No 49
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=95.67 E-value=0.012 Score=37.45 Aligned_cols=41 Identities=5% Similarity=-0.052 Sum_probs=34.4
Q ss_pred eechhhhhhhhcccHHH-HHHHHHHHHHcCCeeEecccceeE
Q 033931 60 LITPSILSDRLRINGSL-ARRAIKDLMARGSIRMISAHASQQ 100 (108)
Q Consensus 60 ~ITps~vserlkI~~Sl-Ar~~Lr~L~~kGlIk~V~k~~~q~ 100 (108)
-+|++.||+.+++.-+- .-++|+.|+++|+|..-..+++..
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~ 71 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVK 71 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEE
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCCeE
Confidence 37999999999999999 999999999999999433444443
No 50
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=95.65 E-value=0.018 Score=38.28 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=33.0
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
-+|++.||+++++.-+-..++|+.|+++|+|....
T Consensus 54 ~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 54 GATAPQLGAALQMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecC
Confidence 48999999999999999999999999999999873
No 51
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=95.65 E-value=0.024 Score=36.99 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=33.2
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
.-+|++.||+.++++-+-..++|+.|+++|+|....
T Consensus 42 ~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 42 PGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp TTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeec
Confidence 347999999999999999999999999999999873
No 52
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=95.64 E-value=0.025 Score=36.86 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=32.6
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
-+|++.||+.++++-|-.-++|+.|+++|+|...
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 5899999999999999999999999999999986
No 53
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=95.64 E-value=0.023 Score=37.48 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=32.9
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
-+|++.||+.+++.-|-.-++|+.|+++|+|....
T Consensus 43 ~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 43 GIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 48999999999999999999999999999999873
No 54
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.63 E-value=0.015 Score=39.10 Aligned_cols=38 Identities=8% Similarity=0.097 Sum_probs=33.2
Q ss_pred CeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecc
Q 033931 58 FKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISA 95 (108)
Q Consensus 58 ~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k 95 (108)
-..+|...||++++|+-+..+++|+.|.+.|+|.-+..
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g 61 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG 61 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC--
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCC
Confidence 35689999999999999999999999999999977643
No 55
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.62 E-value=0.027 Score=36.83 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=32.5
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
+|++.||++++++-+-..++|+.|+++|+|....
T Consensus 51 ~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 51 MESYQLANQACILRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 9999999999999999999999999999998873
No 56
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=95.62 E-value=0.023 Score=43.45 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=35.3
Q ss_pred CCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecc
Q 033931 56 PKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISA 95 (108)
Q Consensus 56 pk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k 95 (108)
|+.++=|-..||++|+|+-...|+||+.|+++|+|....+
T Consensus 49 ~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g 88 (272)
T 3eet_A 49 PHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGRSG 88 (272)
T ss_dssp TTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred CcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 4467779999999999999999999999999999977543
No 57
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.61 E-value=0.02 Score=37.62 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=33.4
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
.-+|++.||+.+++.-|-..++|+.|+++|+|....
T Consensus 51 ~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 51 DSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp SCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecC
Confidence 348999999999999999999999999999999873
No 58
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=95.57 E-value=0.027 Score=36.92 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=32.2
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
+|++.||++++++-|-.-++|+.|+++|+|...
T Consensus 42 ~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 42 LTISDIMEELKISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 899999999999999999999999999999987
No 59
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=95.56 E-value=0.02 Score=38.36 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=32.9
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
-+|++.||++++|.-+-..++|+.|+++|+|....
T Consensus 61 ~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 61 ERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecC
Confidence 48999999999999999999999999999999873
No 60
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.55 E-value=0.019 Score=38.01 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=32.9
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
.-+|++.||+.++|+-+-..++|+.|+++|+|...
T Consensus 49 ~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 49 GDVTPSELAAAERMRSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeC
Confidence 34899999999999999999999999999999887
No 61
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=95.53 E-value=0.02 Score=41.52 Aligned_cols=51 Identities=24% Similarity=0.289 Sum_probs=42.8
Q ss_pred eCHHHHHHHHhhC------CCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 43 FDQATYDKLLSEA------PKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 43 ~dk~t~dKl~KEV------pk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
+....|+.|...| |+.++ +-..||++|+|+-+--|.||+.|+..|+|...-
T Consensus 13 l~~~v~~~l~~~I~~g~l~pG~~L-~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~ 69 (218)
T 3sxy_A 13 VRTKVYNLLKEMILNHELKLGEKL-NVRELSEKLGISFTPVRDALLQLATEGLVKVVP 69 (218)
T ss_dssp -CHHHHHHHHHHHHTTSSCTTCEE-CHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEET
T ss_pred HHHHHHHHHHHHHHhCCCCCCCEe-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 4456777777665 55677 999999999999999999999999999998764
No 62
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=95.52 E-value=0.011 Score=40.47 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=37.4
Q ss_pred HHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 46 ATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 46 ~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
..++.|+.-+-...-+|++.||+.|+|+-+-.+++|+.|+++|+|....
T Consensus 40 ~~~~~i~~~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~ 88 (155)
T 2h09_A 40 DYVELISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIP 88 (155)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEET
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEec
Confidence 3444444333222347999999999999999999999999999987653
No 63
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=95.50 E-value=0.017 Score=38.18 Aligned_cols=35 Identities=9% Similarity=0.072 Sum_probs=33.0
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
-+|++.||+.++++-+-..++|+.|+++|+|....
T Consensus 51 ~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 51 PVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp EEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeec
Confidence 48999999999999999999999999999998874
No 64
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.48 E-value=0.03 Score=36.82 Aligned_cols=35 Identities=26% Similarity=0.198 Sum_probs=32.9
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
-+|++.||+.+++.-+-.-.+|+.|+++|+|....
T Consensus 47 ~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~ 81 (145)
T 2a61_A 47 PKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTP 81 (145)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecC
Confidence 48999999999999999999999999999999873
No 65
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=95.47 E-value=0.024 Score=37.33 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=36.6
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
-+|+..||++++|+-|...+.|+.|++.|+|..... ++...|.
T Consensus 38 ~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~-gr~~~y~ 80 (108)
T 2kko_A 38 ERAVEAIATATGMNLTTASANLQALKSGGLVEARRE-GTRQYYR 80 (108)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEE-TTEEEEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe-CCEEEEE
Confidence 369999999999999999999999999999987653 4445564
No 66
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=95.45 E-value=0.028 Score=37.95 Aligned_cols=34 Identities=24% Similarity=0.158 Sum_probs=32.5
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
-+|++.||++++|.-+-..++|+.|+++|+|...
T Consensus 66 ~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 66 GLPIGTLGIFAVVEQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 4899999999999999999999999999999887
No 67
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=95.44 E-value=0.02 Score=40.21 Aligned_cols=47 Identities=13% Similarity=0.192 Sum_probs=38.8
Q ss_pred CCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec----ccceeEEEe
Q 033931 57 KFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS----AHASQQIYT 103 (108)
Q Consensus 57 k~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~----k~~~q~IYt 103 (108)
+...+||..||+++++..+-.-++|+.|+++|+|..-. .+.+..+|.
T Consensus 48 g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~yd 98 (135)
T 2v79_A 48 GSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYS 98 (135)
T ss_dssp TCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEE
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEee
Confidence 34789999999999999999999999999999999842 234445564
No 68
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=95.42 E-value=0.029 Score=37.43 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=33.4
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
.-+|++.||+.++++-+-..++|+.|+++|+|....
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecC
Confidence 358999999999999999999999999999998873
No 69
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=95.41 E-value=0.028 Score=38.08 Aligned_cols=34 Identities=32% Similarity=0.375 Sum_probs=32.5
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
-+|++.||+++++.-+-.-++|+.|+++|+|...
T Consensus 64 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 97 (159)
T 3s2w_A 64 GINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQ 97 (159)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 3899999999999999999999999999999887
No 70
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.40 E-value=0.029 Score=37.80 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=32.5
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
-+|++.||++++++-+-.-++|+.|+++|+|...
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 4899999999999999999999999999999987
No 71
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=95.40 E-value=0.026 Score=37.42 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=32.8
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
-+|++.||+++++.-+-.-++|+.|+++|+|....
T Consensus 56 ~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~ 90 (150)
T 2rdp_A 56 DLTVGELSNKMYLACSTTTDLVDRMERNGLVARVR 90 (150)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecC
Confidence 48999999999999999999999999999998863
No 72
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=95.38 E-value=0.023 Score=42.32 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=39.9
Q ss_pred HHHHHHhhC------CCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecc
Q 033931 47 TYDKLLSEA------PKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISA 95 (108)
Q Consensus 47 t~dKl~KEV------pk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k 95 (108)
.|+.|...| |+.++ +...||++|+|+-+-.|.+|+.|+..|+|....+
T Consensus 31 v~~~L~~~I~~g~l~pG~~L-~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~ 84 (237)
T 3c7j_A 31 IEEKLRNAIIDGSLPSGTAL-RQQELATLFGVSRMPVREALRQLEAQSLLRVETH 84 (237)
T ss_dssp HHHHHHHHHHTSSSCTTCBC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHhCCCCCcCee-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 566665554 44566 9999999999999999999999999999987643
No 73
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=95.35 E-value=0.012 Score=38.56 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=55.2
Q ss_pred HHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEec
Q 033931 45 QATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTR 104 (108)
Q Consensus 45 k~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr 104 (108)
+.++..+...|...|++.-..||..|+++-..+-.-|++|++.|.|.=|.-.+.-.||.-
T Consensus 6 ~~ll~~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 6 SGFLTEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp CCHHHHHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 456788888888999999999999999999999999999999999999988899999974
No 74
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=95.34 E-value=0.013 Score=40.12 Aligned_cols=37 Identities=19% Similarity=0.405 Sum_probs=33.5
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecc
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMISA 95 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k 95 (108)
..+||+.||+++++..+-..++|+.|+++|+|.....
T Consensus 50 ~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 50 LFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp SSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 4489999999999999999999999999999998643
No 75
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.32 E-value=0.031 Score=36.90 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=36.2
Q ss_pred echhhhhhhh-cccHHHHHHHHHHHHHcCCeeEecc--cceeEEEe
Q 033931 61 ITPSILSDRL-RINGSLARRAIKDLMARGSIRMISA--HASQQIYT 103 (108)
Q Consensus 61 ITps~vserl-kI~~SlAr~~Lr~L~~kGlIk~V~k--~~~q~IYt 103 (108)
+|++.|++.+ +|.-+..-..|+.|++.|+|..... +++...|.
T Consensus 36 ~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~ 81 (112)
T 1z7u_A 36 KRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYT 81 (112)
T ss_dssp BCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEE
T ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEE
Confidence 7999999999 9999999999999999999988742 34554553
No 76
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=95.30 E-value=0.025 Score=37.82 Aligned_cols=32 Identities=31% Similarity=0.404 Sum_probs=31.4
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
+|++.||+.+++.-|-.-++|+.|+++|+|..
T Consensus 56 ~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 56 ISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 89999999999999999999999999999987
No 77
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=95.27 E-value=0.024 Score=38.63 Aligned_cols=42 Identities=24% Similarity=0.368 Sum_probs=35.9
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec--ccceeEE
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMIS--AHASQQI 101 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~--k~~~q~I 101 (108)
=+|++.||+++++.-+-.-++|+.|+++|+|.... .++|...
T Consensus 60 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~ 103 (162)
T 3k0l_A 60 NLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRIL 103 (162)
T ss_dssp TCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeE
Confidence 48999999999999999999999999999999873 3444443
No 78
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=95.25 E-value=0.025 Score=39.22 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=32.2
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
+|++.||+++++.-+-.-++|+.|+++|+|....
T Consensus 69 ~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 69 QSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 9999999999999999999999999999999873
No 79
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=95.24 E-value=0.019 Score=38.10 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=32.1
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
+|++.||+.+++.-|-.-++|+.|+++|+|...
T Consensus 46 ~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 78 (145)
T 3g3z_A 46 RTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQ 78 (145)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 999999999999999999999999999999986
No 80
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=95.23 E-value=0.03 Score=38.27 Aligned_cols=46 Identities=13% Similarity=0.261 Sum_probs=37.5
Q ss_pred CHHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 44 DQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 44 dk~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
|...++-|..+ .-+|...||++++++-+-.++.|+.|++.|+|..+
T Consensus 7 d~~il~~L~~~----~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 7 DLNIIEELKKD----SRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHC----SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 34455555443 33899999999999999999999999999999864
No 81
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=95.21 E-value=0.029 Score=38.19 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=33.4
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
.-+|++.||+++++.-+-.-++|+.|+++|+|....
T Consensus 66 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 358999999999999999999999999999999873
No 82
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=95.19 E-value=0.036 Score=37.05 Aligned_cols=58 Identities=5% Similarity=0.028 Sum_probs=44.8
Q ss_pred eCHHHHHHHHhhCCCCeeechhhhhhhhcc----cHHHHHHHHHHHHHcCCeeEecccceeEEEecc
Q 033931 43 FDQATYDKLLSEAPKFKLITPSILSDRLRI----NGSLARRAIKDLMARGSIRMISAHASQQIYTRA 105 (108)
Q Consensus 43 ~dk~t~dKl~KEVpk~k~ITps~vserlkI----~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr~ 105 (108)
..-..++-|..+- =+|+..|++++.. .-+-...+|+.|+++|+|.... .++..+|+..
T Consensus 36 ~e~~VL~~L~~~~----~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~-~gR~~~Y~p~ 97 (99)
T 2k4b_A 36 AELIVMRVIWSLG----EARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK-EGRKFVYRPL 97 (99)
T ss_dssp SCSHHHHHHHHHS----CEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE-ETTEEEEECC
T ss_pred HHHHHHHHHHhCC----CCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe-CCCEEEEEEe
Confidence 3445677776533 3799999999985 4678889999999999999875 4667788764
No 83
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=95.19 E-value=0.033 Score=37.08 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=35.6
Q ss_pred echhhhhhhh-cccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 61 ITPSILSDRL-RINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 61 ITps~vserl-kI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
+|++.|++.+ +|+-+..-+.|+.|++.|+|..... +...|.
T Consensus 43 ~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~--r~~~y~ 84 (111)
T 3df8_A 43 QNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG--QITTYA 84 (111)
T ss_dssp BCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES--SSEEEE
T ss_pred CCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec--CcEEEE
Confidence 6699999999 9999999999999999999988654 455554
No 84
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=95.17 E-value=0.024 Score=37.54 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=33.0
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
-+|++.||+.++++-+-..++|+.|+++|+|....
T Consensus 54 ~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 54 TLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp EEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCB
T ss_pred CCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEecc
Confidence 68999999999999999999999999999998763
No 85
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=95.11 E-value=0.046 Score=35.81 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=36.4
Q ss_pred eechhhhhhhh-cccHHHHHHHHHHHHHcCCeeEecc--cceeEEEe
Q 033931 60 LITPSILSDRL-RINGSLARRAIKDLMARGSIRMISA--HASQQIYT 103 (108)
Q Consensus 60 ~ITps~vserl-kI~~SlAr~~Lr~L~~kGlIk~V~k--~~~q~IYt 103 (108)
-+|++.|++++ +|+-+..-..|+.|++.|+|..... .++...|.
T Consensus 27 ~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~ 73 (107)
T 2hzt_A 27 KKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYE 73 (107)
T ss_dssp CBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEE
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEE
Confidence 37999999999 9999999999999999999987632 24444554
No 86
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=95.10 E-value=0.022 Score=38.32 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=32.2
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
.-+|++.||+++++.-+-.-++|+.|+++|+|...
T Consensus 54 ~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 88 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRE 88 (149)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC-
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeC
Confidence 44899999999999999999999999999999887
No 87
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=95.07 E-value=0.038 Score=37.89 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=41.2
Q ss_pred ceeCHHHHHHHHhhCCCCeeechhhhhhhh--cccHHHHHHHHHHHHHcCCeeEe
Q 033931 41 VLFDQATYDKLLSEAPKFKLITPSILSDRL--RINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 41 V~~dk~t~dKl~KEVpk~k~ITps~vserl--kI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
...|..+++-|..+- -+||+.||+.+ +|+-+-.++-|+.|++.|+|...
T Consensus 12 d~~d~~IL~~L~~~g----~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~ 62 (111)
T 3b73_A 12 TIWDDRILEIIHEEG----NGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL 62 (111)
T ss_dssp CHHHHHHHHHHHHHS----CBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CHHHHHHHHHHHHcC----CCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec
Confidence 344666777666554 48999999999 99999999999999999999985
No 88
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=95.02 E-value=0.024 Score=36.95 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=32.4
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
-+|++.||+.+++.-|-.-++|+.|+++|+|...
T Consensus 47 ~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 47 KVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp SEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred CcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeec
Confidence 4899999999999999999999999999999886
No 89
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=95.02 E-value=0.036 Score=38.50 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=37.6
Q ss_pred CHHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 44 DQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 44 dk~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
|...++-|..+-+ +|...||++++++-+-.++.|+.|++.|+|..+
T Consensus 12 ~~~il~~L~~~~~----~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 12 DIKILQVLQENGR----LTNVELSERVALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHCTT----CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCC----CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeee
Confidence 3455555554433 799999999999999999999999999999864
No 90
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=94.96 E-value=0.047 Score=35.50 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=36.1
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
+|+..||+.++|+-|...+.|+.|++.|+|..... ++...|.
T Consensus 40 ~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~-gr~~~y~ 81 (106)
T 1r1u_A 40 ASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ-GQSMIYS 81 (106)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe-CCEEEEE
Confidence 69999999999999999999999999999988653 3445554
No 91
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=94.95 E-value=0.072 Score=39.62 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=38.0
Q ss_pred HHHHHHh-hC-CCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 47 TYDKLLS-EA-PKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 47 t~dKl~K-EV-pk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
+.++|.. +. |+.++=|-..||++|+|+-+..|+||+.|+++|+|....
T Consensus 14 l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~~ 63 (239)
T 3bwg_A 14 IETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVR 63 (239)
T ss_dssp HHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeC
Confidence 3344443 33 345666999999999999999999999999999998754
No 92
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=94.92 E-value=0.031 Score=35.68 Aligned_cols=47 Identities=17% Similarity=0.078 Sum_probs=38.1
Q ss_pred HHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 46 ATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 46 ~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
++-.+|+..+ . .-+|+..||++++|+-+..++.|+.|++.|+|....
T Consensus 31 ~~r~~Il~~L-~-~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 31 PVRRKILRML-D-KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp HHHHHHHHHH-H-TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHH-c-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC
Confidence 3334555555 2 338999999999999999999999999999998765
No 93
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=94.90 E-value=0.032 Score=38.87 Aligned_cols=45 Identities=13% Similarity=0.184 Sum_probs=35.8
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEec
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTR 104 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr 104 (108)
..+|...||++++|+-+..+++|..|.+.|+|.-+.+ +....-+|
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG-~GGy~L~~ 73 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGAGLLK 73 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEEESS
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC-CCceEeCC
Confidence 5789999999999999999999999999999987765 43333333
No 94
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=94.88 E-value=0.029 Score=37.37 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=33.1
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
.-+|++.||++++|+-|-..++|+.|+++|+|....
T Consensus 30 ~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 30 EGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 458999999999999999999999999999998754
No 95
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=94.88 E-value=0.046 Score=37.60 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=32.4
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
-+|++.||+++++.-|-.-++|+.|+++|+|...
T Consensus 59 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 59 PINLATLATLLGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 3899999999999999999999999999999886
No 96
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=94.87 E-value=0.057 Score=33.25 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=35.9
Q ss_pred HHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 45 QATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 45 k~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
..+++-|..+ -..+|...||++++|.-+...++|..|++.|+|..
T Consensus 13 ~~IL~~L~~~---~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 13 QKILQVLSDD---GGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHHH---CSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHc---CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 3455544422 14599999999999999999999999999999754
No 97
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=94.86 E-value=0.067 Score=37.26 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=39.3
Q ss_pred CCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEec
Q 033931 56 PKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTR 104 (108)
Q Consensus 56 pk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr 104 (108)
+.-..+|...||++++|+-+..+++|..|.+.|+|.-+.+.+....-.|
T Consensus 24 ~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar 72 (143)
T 3t8r_A 24 EGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRV 72 (143)
T ss_dssp TTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEESS
T ss_pred CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeeecC
Confidence 4446899999999999999999999999999999987755443333333
No 98
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=94.84 E-value=0.043 Score=35.98 Aligned_cols=44 Identities=11% Similarity=0.136 Sum_probs=37.5
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTR 104 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr 104 (108)
-+|++.||+.++|+-|-..+.|+.|++.|+|.... ..+...|+-
T Consensus 45 ~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~-~~r~~~~~~ 88 (119)
T 2lkp_A 45 PLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDR-AGRSIVYSL 88 (119)
T ss_dssp CCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEE-ETTEEEEEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe-cCCEEEEEE
Confidence 47999999999999999999999999999998754 445556664
No 99
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=94.83 E-value=0.07 Score=34.88 Aligned_cols=42 Identities=12% Similarity=0.263 Sum_probs=35.5
Q ss_pred echhhhhhhhc----ccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 61 ITPSILSDRLR----INGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 61 ITps~vserlk----I~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
+|+..|+++++ +.-|-...+|+-|+++|+|...... +..+|.
T Consensus 25 ~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~~-r~~~~~ 70 (126)
T 1sd4_A 25 VSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSE-NIYFYS 70 (126)
T ss_dssp EEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEE
T ss_pred CCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeCC-CeEEEE
Confidence 89999999998 5789999999999999999997644 455664
No 100
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=94.81 E-value=0.041 Score=41.06 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=33.2
Q ss_pred CCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecc
Q 033931 57 KFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISA 95 (108)
Q Consensus 57 k~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k 95 (108)
+.++=|-..||++|+|+-...|+||+.|+++|+|....+
T Consensus 30 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g 68 (236)
T 3edp_A 30 GMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNG 68 (236)
T ss_dssp CC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEECC
Confidence 456669999999999999999999999999999987643
No 101
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=94.77 E-value=0.062 Score=35.54 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=31.3
Q ss_pred chhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 62 TPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 62 Tps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
|++.||+++++.-|-.-++|+.|+++|+|...
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~ 83 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEAKGLVRRI 83 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 99999999999999999999999999999987
No 102
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=94.77 E-value=0.037 Score=37.08 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=36.4
Q ss_pred HHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 51 LLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 51 l~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
++..+....-+|++.||++++|.-+-.-++|+.|+++|+|...
T Consensus 48 iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 48 VLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp HHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 3334444445899999999999999999999999999999876
No 103
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=94.73 E-value=0.074 Score=38.15 Aligned_cols=50 Identities=10% Similarity=0.069 Sum_probs=40.6
Q ss_pred CCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEecc
Q 033931 56 PKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRA 105 (108)
Q Consensus 56 pk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr~ 105 (108)
+.-..+|...||++++|+-+..+++|..|.+.|+|.-+.+.+....-+|.
T Consensus 40 ~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~ 89 (159)
T 3lwf_A 40 IGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGD 89 (159)
T ss_dssp TTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSC
T ss_pred CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCC
Confidence 34457999999999999999999999999999999987655444444443
No 104
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=94.72 E-value=0.035 Score=37.22 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=32.1
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
-+|++.||++++|+-|-..++|+.|+++|+|...
T Consensus 22 ~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~ 55 (142)
T 1on2_A 22 YARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE 55 (142)
T ss_dssp SCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 3899999999999999999999999999999875
No 105
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=94.70 E-value=0.05 Score=37.20 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=37.2
Q ss_pred CHHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 44 DQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 44 dk~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
|...+.-|..+ .-+|.+.||++++++-+-.++.|+.|++.|+|..+
T Consensus 9 ~~~iL~~L~~~----~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 9 DRILVRELAAD----GRATLSELATRAGLSVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHC----TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 33455555433 23899999999999999999999999999999765
No 106
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=94.65 E-value=0.024 Score=37.94 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=31.3
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
+|++.||++++|.-+-.-++|+.|+++|+|...
T Consensus 55 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~ 87 (150)
T 3fm5_A 55 VNQRGVAATMGLDPSQIVGLVDELEERGLVVRT 87 (150)
T ss_dssp CCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-
T ss_pred cCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 899999999999999999999999999999876
No 107
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=94.65 E-value=0.049 Score=38.53 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=33.4
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
.-+|++.||+++++.-|-.-++|+.|+++|+|....
T Consensus 56 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 56 EETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 358999999999999999999999999999999873
No 108
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=94.57 E-value=0.084 Score=34.43 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=35.9
Q ss_pred eechhhhhhhhc-ccHHHHHHHHHHHHHcCCeeEecc--cceeEEEe
Q 033931 60 LITPSILSDRLR-INGSLARRAIKDLMARGSIRMISA--HASQQIYT 103 (108)
Q Consensus 60 ~ITps~vserlk-I~~SlAr~~Lr~L~~kGlIk~V~k--~~~q~IYt 103 (108)
-+|++.|++.+. |.-+..-..|+.|++.|+|..... .++...|.
T Consensus 38 ~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~ 84 (107)
T 2fsw_A 38 IIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYS 84 (107)
T ss_dssp CEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEE
T ss_pred CcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEE
Confidence 479999999995 999999999999999999987632 34444453
No 109
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=94.55 E-value=0.029 Score=37.25 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=32.3
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
.-+|++.||+++++.-|-.-++|+.|+++|+|...
T Consensus 53 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 53 SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 36899999999999999999999999999999876
No 110
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=94.54 E-value=0.034 Score=37.07 Aligned_cols=35 Identities=14% Similarity=0.019 Sum_probs=32.8
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
.-+|++.||+++++.-|-.-++|+.|+++|+|...
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 45899999999999999999999999999999875
No 111
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=94.50 E-value=0.052 Score=37.08 Aligned_cols=46 Identities=26% Similarity=0.213 Sum_probs=37.5
Q ss_pred CHHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 44 DQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 44 dk~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
|...++-|..+ .-+|...||++++++-+-.++.|+.|++.|+|..+
T Consensus 11 d~~il~~L~~~----~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 11 DMQLVKILSEN----SRLTYRELADILNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHC----TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 44455545443 34899999999999999999999999999999864
No 112
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=94.50 E-value=0.056 Score=38.50 Aligned_cols=46 Identities=33% Similarity=0.315 Sum_probs=37.6
Q ss_pred CHHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 44 DQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 44 dk~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
|...++-|..+- -+|...||++++++-+-.++.|+.|++.|+|..+
T Consensus 19 d~~IL~~L~~~~----~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 19 DRNILRLLKKDA----RLTISELSEQLKKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHCT----TCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC----CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 345555555442 3899999999999999999999999999999754
No 113
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=94.49 E-value=0.056 Score=36.24 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=35.5
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTR 104 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr 104 (108)
-+|.+.||+.++|.-|-..+.|+.|++.|+|.... .++...|+-
T Consensus 56 ~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~-~gr~~~y~l 99 (122)
T 1u2w_A 56 ELCVCDIANILGVTIANASHHLRTLYKQGVVNFRK-EGKLALYSL 99 (122)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-----CCEEEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE-ECCEEEEEE
Confidence 37999999999999999999999999999998754 344556654
No 114
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=94.48 E-value=0.038 Score=39.80 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=29.9
Q ss_pred hhhhhhhhc--------------ccHHHHHHHHHHHHHcCCeeEec
Q 033931 63 PSILSDRLR--------------INGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 63 ps~vserlk--------------I~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
...|++.|+ ++.+..|.||+.|++.|+|....
T Consensus 70 ~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~ 115 (150)
T 2v7f_A 70 IERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVP 115 (150)
T ss_dssp HHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeC
Confidence 389999999 99999999999999999998764
No 115
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.45 E-value=0.043 Score=37.10 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=33.8
Q ss_pred CeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 58 FKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 58 ~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
-+=|+..+|..++++.-...-++|+.||.+|+|+.|
T Consensus 51 n~GIw~kdL~~~tnL~~~~vtkiLK~LE~k~lIK~V 86 (95)
T 2yu3_A 51 NKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 86 (95)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEe
Confidence 355899999999999999999999999999999999
No 116
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=94.37 E-value=0.056 Score=37.05 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=37.5
Q ss_pred CHHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 44 DQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 44 dk~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
|...++-|..+ .-+|...||++++++-+-.++.|+.|++.|+|..+
T Consensus 10 d~~il~~L~~~----~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 10 DRGILEALMGN----ARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHHC----TTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceE
Confidence 34455545443 34899999999999999999999999999999864
No 117
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=94.35 E-value=0.025 Score=37.54 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=28.7
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
-+|++.||++++++-|-.-++|+.|+++|+|....
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 51 GLNLQDLGRQMCRDKALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp TCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC--
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeecc
Confidence 38999999999999999999999999999998763
No 118
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=94.26 E-value=0.037 Score=44.16 Aligned_cols=55 Identities=9% Similarity=0.105 Sum_probs=43.1
Q ss_pred HHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEec
Q 033931 45 QATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTR 104 (108)
Q Consensus 45 k~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr 104 (108)
..+++.|.. ..++|...+++.++|+-+-|++.|++|++.|+|..+... |..+|..
T Consensus 300 ~~ll~~l~~----~p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~~g-R~~~y~~ 354 (373)
T 2qc0_A 300 HELVQVIFE----QPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQSG-KEKLFVH 354 (373)
T ss_dssp HHHHHHHHH----CSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--C-CSCEEEC
T ss_pred HHHHHHHHh----CCcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEecCC-CceEEeh
Confidence 445555553 358999999999999999999999999999999999654 4467753
No 119
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=94.24 E-value=0.06 Score=36.81 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=30.0
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
-+|++.||+.+++.-+-.-++|+.|+++|+|....
T Consensus 62 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 96 (168)
T 3u2r_A 62 GMATLQIADRLISRAPDITRLIDRLDDRGLVLRTR 96 (168)
T ss_dssp CEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecC
Confidence 58999999999999999999999999999999873
No 120
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=94.21 E-value=0.079 Score=36.06 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=33.0
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
-+|++.||+++++.-|-.-++|..|+++|+|....
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 51 ELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEee
Confidence 48999999999999999999999999999999873
No 121
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=94.18 E-value=0.083 Score=38.25 Aligned_cols=50 Identities=18% Similarity=0.325 Sum_probs=40.7
Q ss_pred HHHHHHHHhhC------CCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecc
Q 033931 45 QATYDKLLSEA------PKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISA 95 (108)
Q Consensus 45 k~t~dKl~KEV------pk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k 95 (108)
...|+.|...| |+.++- -..||++|+|+-+--|.||+.|+..|+|....+
T Consensus 19 ~~v~~~l~~~I~~g~l~pG~~L~-E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~ 74 (222)
T 3ihu_A 19 DTVFFGIMSGLELGTFVPGQRLV-ETDLVAHFGVGRNSVREALQRLAAEGIVDLQRH 74 (222)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEEC-HHHHHHHHTCCHHHHHHHHHHHHHTTSEEECST
T ss_pred HHHHHHHHHHHHhCCCCCCCccC-HHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 45666666554 445665 999999999999999999999999999987643
No 122
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=94.16 E-value=0.091 Score=34.83 Aligned_cols=42 Identities=19% Similarity=0.084 Sum_probs=36.2
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
+|++.||+.++|.-+-..+-|+.|++.|+|..... ++...|.
T Consensus 32 ~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~-gr~~~y~ 73 (118)
T 3f6o_A 32 ATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQ-GRVRTCA 73 (118)
T ss_dssp EEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEE
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEec-CCEEEEE
Confidence 69999999999999999999999999999987644 4455564
No 123
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=94.14 E-value=0.1 Score=35.44 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=35.3
Q ss_pred eechhhhhhhhc----ccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 60 LITPSILSDRLR----INGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 60 ~ITps~vserlk----I~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
-+|+..|++++. +.-|-...+|..|+++|+|..... ++..+|.
T Consensus 24 ~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~-~r~~~~~ 70 (138)
T 2g9w_A 24 PQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRD-DRAHRYA 70 (138)
T ss_dssp CEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC----CCEEE
T ss_pred CCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEec-CCeEEEE
Confidence 489999999998 899999999999999999999864 4455554
No 124
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=94.02 E-value=0.073 Score=34.11 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=36.6
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEec
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTR 104 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr 104 (108)
.|+..|++.++|.-+.....|+.|++.|+|..... .+...|.-
T Consensus 37 ~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~-g~~~~y~l 79 (102)
T 3pqk_A 37 FSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRN-IKQIFYRL 79 (102)
T ss_dssp BCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECS-SSCCEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe-CCEEEEEE
Confidence 79999999999999999999999999999987543 44455653
No 125
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=93.98 E-value=0.029 Score=37.70 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=32.5
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
-+|++.||+++++.-+-.-++|+.|+++|+|...
T Consensus 62 ~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 62 GLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp CEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC
T ss_pred CCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 4899999999999999999999999999999886
No 126
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=93.97 E-value=0.032 Score=37.37 Aligned_cols=36 Identities=14% Similarity=0.356 Sum_probs=33.2
Q ss_pred CCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 57 KFKLITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 57 k~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
...-+|++.||+++++.-|-.-++|+.|+++|+|..
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 345599999999999999999999999999999986
No 127
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=93.96 E-value=0.053 Score=36.48 Aligned_cols=35 Identities=31% Similarity=0.348 Sum_probs=32.0
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
.-+|++.||+.++|.-+-.-++|+.|+++|+|...
T Consensus 62 ~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~ 96 (162)
T 2fa5_A 62 PGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRE 96 (162)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeee
Confidence 35899999999999999999999999999999875
No 128
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=93.95 E-value=0.095 Score=35.41 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=40.7
Q ss_pred HHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEec
Q 033931 50 KLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTR 104 (108)
Q Consensus 50 Kl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr 104 (108)
+|+..+-. .-.|.+.||+.++|.-|...+.|+.|++.|+|..... ++...|+-
T Consensus 50 ~IL~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~-gr~~~y~l 102 (122)
T 1r1t_A 50 RLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ-GRHVYYQL 102 (122)
T ss_dssp HHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEE
T ss_pred HHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe-CCEEEEEE
Confidence 34444432 3479999999999999999999999999999987543 44556664
No 129
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=93.94 E-value=0.047 Score=36.60 Aligned_cols=46 Identities=20% Similarity=0.285 Sum_probs=36.3
Q ss_pred CHHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 44 DQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 44 dk~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
|...+.-|..+ + -+|.+.||++++++-+-.++.|+.|++.|+|..+
T Consensus 6 ~~~il~~L~~~-~---~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 6 DKIILEILEKD-A---RTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHHC-T---TCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHc-C---CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 33455544433 2 2599999999999999999999999999999754
No 130
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=93.90 E-value=0.29 Score=31.98 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=46.3
Q ss_pred CHHHHHHH---HhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEeccc
Q 033931 44 DQATYDKL---LSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAH 96 (108)
Q Consensus 44 dk~t~dKl---~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~ 96 (108)
|-+.|+.+ ..+.|--..+|...||-+|++.=+-+.++|-.|+++|.+..+..+
T Consensus 10 ~~~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~~ 65 (75)
T 1sfu_A 10 DAEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSN 65 (75)
T ss_dssp SHHHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCS
T ss_pred hHHHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCCC
Confidence 66788888 556677788999999999999999999999999999999988543
No 131
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=93.84 E-value=0.1 Score=38.15 Aligned_cols=43 Identities=26% Similarity=0.209 Sum_probs=36.3
Q ss_pred HHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 50 KLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 50 Kl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
+|+..+.+ .-+|.+.||++++++-+-.++-|+.|++.|+|...
T Consensus 24 ~IL~~L~~-~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 24 KILKLLRN-KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 34444443 34899999999999999999999999999999987
No 132
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=93.79 E-value=0.12 Score=35.45 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=36.7
Q ss_pred eeechhhhhhhh-cccHHHHHHHHHHHHHcCCeeEecc--cceeEEEe
Q 033931 59 KLITPSILSDRL-RINGSLARRAIKDLMARGSIRMISA--HASQQIYT 103 (108)
Q Consensus 59 k~ITps~vserl-kI~~SlAr~~Lr~L~~kGlIk~V~k--~~~q~IYt 103 (108)
.-+|++.|++.+ +|.-+..-+.|+.|++.|+|..... .++...|.
T Consensus 47 g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~ 94 (131)
T 1yyv_A 47 GTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYS 94 (131)
T ss_dssp CCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEE
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEE
Confidence 347999999999 7999999999999999999987632 24555554
No 133
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=93.68 E-value=0.067 Score=36.39 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=31.9
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
-+|...||++++++-|-.++.|+.|++.|+|..+
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 4899999999999999999999999999999863
No 134
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=93.67 E-value=0.058 Score=36.97 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=29.3
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
.-+|++.||+++++.-+-.-++|..|+++|+|...+
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~~~ 86 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMRRDGLVRVMA 86 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC---
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeC
Confidence 348999999999999999999999999999996554
No 135
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=93.58 E-value=0.072 Score=41.00 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=32.6
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCee-Ee
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIR-MI 93 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk-~V 93 (108)
.-+|...||++|+|+-+..|+-|.+|+++|+|. .+
T Consensus 20 ~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~iri 55 (315)
T 2w48_A 20 QDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAI 55 (315)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEe
Confidence 449999999999999999999999999999998 55
No 136
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=93.56 E-value=0.1 Score=35.84 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=32.1
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
.+|++.||++++|.-|-.-++|..|+++|+|...
T Consensus 46 ~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~ 79 (151)
T 4aik_A 46 EQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRH 79 (151)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEee
Confidence 4689999999999999999999999999999876
No 137
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=93.47 E-value=0.072 Score=36.86 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=35.5
Q ss_pred chhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEec
Q 033931 62 TPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTR 104 (108)
Q Consensus 62 Tps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr 104 (108)
|...||++++|+-+..+++|..|.+.|+|.-+.. +....-.|
T Consensus 25 s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy~Lar 66 (145)
T 1xd7_A 25 SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGASLKK 66 (145)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSCEESS
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCceecC
Confidence 8999999999999999999999999999988765 44433333
No 138
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=93.42 E-value=0.068 Score=40.47 Aligned_cols=47 Identities=9% Similarity=-0.031 Sum_probs=38.0
Q ss_pred CeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEecc
Q 033931 58 FKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRA 105 (108)
Q Consensus 58 ~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr~ 105 (108)
...||++.++++|++...+|+..|.+|+.+|++-.=.... ..-|.++
T Consensus 166 ~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D~~~e-g~~y~pn 212 (218)
T 3cuq_B 166 KGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDDSVE-GLRFYPN 212 (218)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEESSS-CEEEEEC
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEECCCC-ceEEehh
Confidence 4689999999999999999999999999999997754333 2335443
No 139
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=93.41 E-value=0.17 Score=37.06 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=34.4
Q ss_pred CCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 57 KFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 57 k~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
...-+|++.||++|++.-+-...+|+.|+++|+|....
T Consensus 17 ~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~ 54 (214)
T 3hrs_A 17 RHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDK 54 (214)
T ss_dssp SCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEec
Confidence 34679999999999999999999999999999998754
No 140
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=93.35 E-value=0.027 Score=37.60 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=26.4
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
-+|++.||+++++.-+-.-++|+.|+++|+|...
T Consensus 57 ~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 90 (148)
T 3jw4_A 57 GIIQKDLAQFFGRRGASITSMLQGLEKKGYIERR 90 (148)
T ss_dssp CCCHHHHHHC------CHHHHHHHHHHTTSBCCC
T ss_pred CCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEee
Confidence 4899999999999999999999999999999877
No 141
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=93.32 E-value=0.12 Score=34.40 Aligned_cols=43 Identities=19% Similarity=0.160 Sum_probs=36.2
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEec
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTR 104 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr 104 (108)
.|+..||+.++|+-|...+.|+.|++.|+|..... ++...|.-
T Consensus 35 ~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~-gr~~~y~l 77 (118)
T 2jsc_A 35 CYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYE-GRQVRYAL 77 (118)
T ss_dssp CSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEEC-SSSEEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEE-CCEEEEEE
Confidence 68999999999999999999999999999987643 44455653
No 142
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=93.31 E-value=0.09 Score=38.09 Aligned_cols=34 Identities=24% Similarity=0.116 Sum_probs=32.6
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
+|++.||+++++.-+-.-++|+.|+++|+|....
T Consensus 63 ~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 63 ASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 8999999999999999999999999999998874
No 143
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=93.19 E-value=0.2 Score=33.72 Aligned_cols=51 Identities=16% Similarity=0.089 Sum_probs=42.6
Q ss_pred HHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEeccc
Q 033931 45 QATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAH 96 (108)
Q Consensus 45 k~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~ 96 (108)
++..++|...+-. .-.++..+++++++.-+.++.+|+.|.+.|.|.++..+
T Consensus 6 ~~l~~~i~~~~~~-~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~ 56 (121)
T 2pjp_A 6 QAIWQKAEPLFGD-EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKD 56 (121)
T ss_dssp HHHHHHHGGGCSS-SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETT
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 4566777776644 34588999999999999999999999999999999754
No 144
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=92.92 E-value=0.077 Score=37.89 Aligned_cols=46 Identities=13% Similarity=0.142 Sum_probs=37.6
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEec
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTR 104 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr 104 (108)
..+|...||++++|+-+..+++|+.|.+.|+|.-+.+.+.-..-.|
T Consensus 27 ~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar 72 (162)
T 3k69_A 27 SKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQLDL 72 (162)
T ss_dssp SCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEECCS
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeEecC
Confidence 5699999999999999999999999999999977655443333333
No 145
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=92.90 E-value=0.19 Score=34.83 Aligned_cols=35 Identities=11% Similarity=0.264 Sum_probs=32.6
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
-+|++.|+++++|.-+..-+.|+.|++.|+|....
T Consensus 37 ~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~ 71 (146)
T 2f2e_A 37 LTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVP 71 (146)
T ss_dssp CCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 47999999999999999999999999999999874
No 146
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=92.66 E-value=0.23 Score=34.55 Aligned_cols=45 Identities=11% Similarity=0.055 Sum_probs=36.8
Q ss_pred eeechhhhhhhh-cccHHHHHHHHHHHHHcCCeeEecc--cceeEEEe
Q 033931 59 KLITPSILSDRL-RINGSLARRAIKDLMARGSIRMISA--HASQQIYT 103 (108)
Q Consensus 59 k~ITps~vserl-kI~~SlAr~~Lr~L~~kGlIk~V~k--~~~q~IYt 103 (108)
.-.+++.|++.+ +|+-+.--..|++|++.|+|..... .++...|.
T Consensus 38 g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~ 85 (131)
T 4a5n_A 38 GKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYS 85 (131)
T ss_dssp SCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEE
T ss_pred CCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEE
Confidence 347999999999 9999999999999999999987732 33455564
No 147
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=92.63 E-value=0.22 Score=35.02 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=43.5
Q ss_pred HHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEec
Q 033931 46 ATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTR 104 (108)
Q Consensus 46 ~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr 104 (108)
++--+|+..+-. .=.|+..||+.++|.-|-...-|+.|++.|+|..... .+..+|.-
T Consensus 58 p~R~~IL~~L~~-~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~-Gr~~~y~l 114 (151)
T 3f6v_A 58 PTRRRLVQLLTS-GEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKD-GRFRYYRL 114 (151)
T ss_dssp HHHHHHHHHGGG-CCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEE
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec-CCEEEEEE
Confidence 444455555542 3389999999999999999999999999999998654 44456653
No 148
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=92.58 E-value=0.1 Score=42.02 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=37.8
Q ss_pred CeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 58 FKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 58 ~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
..++|...+++.++++-.-|++.|++|.+.|+|..+..+ +..+|.
T Consensus 309 ~p~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~~~~~g-R~~~y~ 353 (373)
T 3eqx_A 309 QPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQSG-KEKLFV 353 (373)
T ss_dssp CSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--C-CSCEEE
T ss_pred CCCccHHHHHHHhCcCHHHHHHHHHHHHHCCcEEEeCCC-CceEee
Confidence 458999999999999999999999999999999998654 345664
No 149
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=92.50 E-value=0.13 Score=35.96 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=34.7
Q ss_pred HHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 51 LLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 51 l~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
|+.....---+|...||++++++-+-.++-|+.|++.|+|..+
T Consensus 8 il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 8 ILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeec
Confidence 3333333333699999999999999999999999999999843
No 150
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=92.47 E-value=0.19 Score=36.74 Aligned_cols=44 Identities=7% Similarity=0.110 Sum_probs=36.8
Q ss_pred echh-h-hhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEecc
Q 033931 61 ITPS-I-LSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRA 105 (108)
Q Consensus 61 ITps-~-vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr~ 105 (108)
+|.+ . +++++++...+|+..|.+++++|++-.=..... .-|-.|
T Consensus 119 vt~~~~~la~~~~ws~~~a~e~L~~~e~~G~l~~D~~~~G-~~y~~N 164 (169)
T 1u5t_B 119 LTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQLSG-IYYYKN 164 (169)
T ss_dssp HHHHHHTSCTTCCCCHHHHHHHHHHHHHHTSEEEEECSSC-EEEEEC
T ss_pred ccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEECCCCc-ceEEee
Confidence 8999 9 999999999999999999999999987654444 345444
No 151
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=92.17 E-value=0.063 Score=36.83 Aligned_cols=45 Identities=16% Similarity=0.145 Sum_probs=36.6
Q ss_pred HHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 45 QATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 45 k~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
...++-|..+ .-+|.+.||++++++-+-.++.|+.|++.|+|..+
T Consensus 10 ~~il~~L~~~----~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 10 KKIIKILQND----GKAPLREISKITGLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHC----TTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 3445544433 34899999999999999999999999999999764
No 152
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=92.10 E-value=0.08 Score=37.75 Aligned_cols=46 Identities=17% Similarity=0.176 Sum_probs=37.1
Q ss_pred CHHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 44 DQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 44 dk~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
|...++-|..+ .-+|...||++++++-+-.++-|+.|++.|+|..+
T Consensus 29 d~~IL~~L~~~----~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 29 DKKIIKILQND----GKAPLREISKITGLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHC----TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 33445544443 34899999999999999999999999999999764
No 153
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=92.04 E-value=0.28 Score=36.17 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=36.2
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEeccc----ceeEEEe
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAH----ASQQIYT 103 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~----~~q~IYt 103 (108)
.|++.|+++++++-|.....|+.|++.|+|...... ++..+|.
T Consensus 29 ~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~ 75 (202)
T 2p4w_A 29 YFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYM 75 (202)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEE
Confidence 799999999999999999999999999999886432 4444554
No 154
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=91.30 E-value=0.049 Score=40.80 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=5.2
Q ss_pred HHHHHHHhhCC------CCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 46 ATYDKLLSEAP------KFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 46 ~t~dKl~KEVp------k~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
..++.|...|- +.++=|-..||++|+|+-+..|+||+.|+++|+|....
T Consensus 20 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 74 (247)
T 2ra5_A 20 QLSQQLEAAIEHGALTPGSLLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRRR 74 (247)
T ss_dssp ------------------------------------------------CEEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEc
Confidence 34455544443 34555899999999999999999999999999997653
No 155
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=91.23 E-value=0.17 Score=36.31 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=31.2
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
.|...||+.|+++-+-+++.|+.|+++|+|....
T Consensus 25 ~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 25 PSVREIARRFRITPRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC-
T ss_pred CCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEecC
Confidence 7899999999999999999999999999998753
No 156
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=90.96 E-value=0.36 Score=35.84 Aligned_cols=42 Identities=19% Similarity=0.172 Sum_probs=37.9
Q ss_pred CeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEeccccee
Q 033931 58 FKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQ 99 (108)
Q Consensus 58 ~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q 99 (108)
.--.|.|.|+..++++-|-|+-+|..|+.+|+|..|..+...
T Consensus 22 ~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~GK~a 63 (165)
T 2vxz_A 22 DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVA 63 (165)
T ss_dssp TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTEE
T ss_pred hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEEccEE
Confidence 556899999999999999999999999999999999766644
No 157
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=90.77 E-value=0.21 Score=36.70 Aligned_cols=34 Identities=21% Similarity=0.487 Sum_probs=31.6
Q ss_pred ech--hhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 61 ITP--SILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 61 ITp--s~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
+|+ ..||+++++.-+-...+|+.|+++|+|....
T Consensus 23 ~~~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~ 58 (230)
T 1fx7_A 23 VTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAG 58 (230)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 677 9999999999999999999999999998864
No 158
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=90.36 E-value=0.49 Score=32.03 Aligned_cols=45 Identities=16% Similarity=0.358 Sum_probs=37.7
Q ss_pred eeechhhhhhhh-----cccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 59 KLITPSILSDRL-----RINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 59 k~ITps~vserl-----kI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
.-+|...|.+++ +|..+-.-+.|+.|++.|+|..+.-......|-
T Consensus 25 ~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~ 74 (131)
T 2o03_A 25 DFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVYR 74 (131)
T ss_dssp SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEEE
Confidence 358999999998 788999999999999999999997655555564
No 159
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=90.25 E-value=0.036 Score=38.72 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=31.8
Q ss_pred CCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 57 KFKLITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 57 k~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
+.++ |...||++|+++-+-.|.+|+.|++.|+|..
T Consensus 25 ~~~l-s~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 25 DGRI-SNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp CSSC-CTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred CCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 4444 9999999999999999999999999999985
No 160
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=90.18 E-value=0.46 Score=36.01 Aligned_cols=33 Identities=15% Similarity=0.051 Sum_probs=32.0
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
+|.+.||+++++.-|-..+.|+.|++.|+|...
T Consensus 167 ~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~ 199 (244)
T 2wte_A 167 TGITELAKMLDKSEKTLINKIAELKKFGILTQK 199 (244)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 899999999999999999999999999999886
No 161
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=90.09 E-value=0.45 Score=35.17 Aligned_cols=35 Identities=11% Similarity=0.137 Sum_probs=32.7
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
-+|.+.||+++++.-|-+.++|+.|++.|+|....
T Consensus 21 ~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~ 55 (241)
T 2xrn_A 21 GLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALG 55 (241)
T ss_dssp CEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECG
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 47999999999999999999999999999998754
No 162
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=89.94 E-value=0.62 Score=40.08 Aligned_cols=53 Identities=9% Similarity=0.033 Sum_probs=43.5
Q ss_pred HHHHHHHHhhCCCCeeechhhhhhhhc-------ccHHHHHHHHHHHHHcCCeeEecccc
Q 033931 45 QATYDKLLSEAPKFKLITPSILSDRLR-------INGSLARRAIKDLMARGSIRMISAHA 97 (108)
Q Consensus 45 k~t~dKl~KEVpk~k~ITps~vserlk-------I~~SlAr~~Lr~L~~kGlIk~V~k~~ 97 (108)
.....+|+.-+.....||...|+++|+ +...+|+.+|.+|+.+|++-.=....
T Consensus 493 ~~~~~~il~l~~~~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~eG~l~rDd~~~ 552 (566)
T 1w7p_D 493 DVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQLS 552 (566)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCccccCcccHHHHHHHHHHHHHcCCEEEECCCC
Confidence 455666665455568999999999999 99999999999999999997764444
No 163
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=89.87 E-value=0.06 Score=37.43 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=32.2
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
-+|++.||+.++|+-+-.-++|+.|+++|+|...
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 119 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERR 119 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEec
Confidence 4899999999999999999999999999999886
No 164
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=89.32 E-value=0.24 Score=34.86 Aligned_cols=41 Identities=10% Similarity=0.079 Sum_probs=34.3
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec-ccceeEEEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMIS-AHASQQIYTR 104 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~-k~~~q~IYtr 104 (108)
.+|+..||+.++|+.+ .||.-++.|+|.++. ..++...|+.
T Consensus 4 ~~tI~evA~~~Gvs~~----tLR~ye~~GLl~p~~r~~~g~R~Y~~ 45 (146)
T 3hh0_A 4 AWLISEFASVGDVTVR----ALRYYDKINLLKPSDYTEGGHRLYTK 45 (146)
T ss_dssp CBCHHHHHHHHTCCHH----HHHHHHHTTSSCCSEECTTSCEEBCH
T ss_pred CCcHHHHHHHHCcCHH----HHHHHHHCCCCCCCeECCCCCEeeCH
Confidence 6899999999998875 589999999999984 3467788875
No 165
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=89.22 E-value=0.57 Score=32.29 Aligned_cols=45 Identities=7% Similarity=0.102 Sum_probs=37.2
Q ss_pred eeechhhhhhhh-----cccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 59 KLITPSILSDRL-----RINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 59 k~ITps~vserl-----kI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
.-+|...|.+++ +|..+-.-+.|+.|++.|+|..+.-..+...|-
T Consensus 36 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 85 (145)
T 2fe3_A 36 AHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFD 85 (145)
T ss_dssp SCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEE
T ss_pred CCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCCCceEEE
Confidence 358899999998 788899999999999999999996655555564
No 166
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=89.15 E-value=0.29 Score=37.83 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=37.7
Q ss_pred CCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEE
Q 033931 57 KFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIY 102 (108)
Q Consensus 57 k~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IY 102 (108)
..-+||++.|++.+++....|+.+|.+|+..|++-.=........|
T Consensus 165 ~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~GllwvD~q~~ge~~Y 210 (234)
T 3cuq_A 165 KNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHY 210 (234)
T ss_dssp TTSEECHHHHHHHHTCCHHHHHHHHHHHHHHTSCEEESSSSSSCEE
T ss_pred hcCcCcHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEeCCCCCccee
Confidence 4679999999999999999999999999999998654443333444
No 167
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=88.98 E-value=0.59 Score=34.55 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=32.2
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
-+|.+.||+++++.-|-+.++|+.|++.|+|...
T Consensus 23 ~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 23 DVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC
Confidence 4799999999999999999999999999999876
No 168
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=88.95 E-value=0.36 Score=35.43 Aligned_cols=32 Identities=13% Similarity=0.289 Sum_probs=29.6
Q ss_pred chhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 62 TPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 62 Tps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
+++.||+++++.-+-...+|+.|+++|+|...
T Consensus 26 ~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~ 57 (226)
T 2qq9_A 26 LRARIAERLEQSGPTVSQTVARMERDGLVVVA 57 (226)
T ss_dssp BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred cHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 44999999999999999999999999999875
No 169
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=88.73 E-value=0.69 Score=34.63 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=36.8
Q ss_pred HHhhCCC-CeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 51 LLSEAPK-FKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 51 l~KEVpk-~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
|+.-+-. -.-+|.+.||+++++.-|-+-++|+.|++.|+|....
T Consensus 11 IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~ 55 (260)
T 3r4k_A 11 LLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVE 55 (260)
T ss_dssp HHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcC
Confidence 4444443 2578999999999999999999999999999998754
No 170
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=88.65 E-value=0.4 Score=36.36 Aligned_cols=43 Identities=14% Similarity=0.281 Sum_probs=36.0
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccce-----eEEEe
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHAS-----QQIYT 103 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~-----q~IYt 103 (108)
+|++.||+.++++-+.....|+.|++.|+|.......+ ...|.
T Consensus 26 ~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~ 73 (232)
T 2qlz_A 26 CYFSLLSSKVSVSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYK 73 (232)
T ss_dssp TCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEE
Confidence 79999999999999999999999999999998544444 55555
No 171
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=88.56 E-value=0.11 Score=33.93 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=46.5
Q ss_pred HHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEE
Q 033931 45 QATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIY 102 (108)
Q Consensus 45 k~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IY 102 (108)
.++|+....=|-...-.+.|.|=-||+|-..-|-+++..||+.|+|-+-..+..-.|+
T Consensus 9 D~Ly~~A~~~V~~~~~aS~S~lQR~lrIGYnRAArlid~lE~~GiVgp~~gsk~ReVL 66 (73)
T 2ve8_A 9 DPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVI 66 (73)
T ss_dssp CTTHHHHHHHHHHHCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSBCCCCTTSCCCBC
T ss_pred cHHHHHHHHHHHhcCCccHHHHHHHHccChHHHHHHHHHHHHCCcCCcccCCCCceEe
Confidence 4566766666666678889999999999999999999999999999998654433343
No 172
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=88.40 E-value=0.76 Score=31.36 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=31.0
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
-+|...||+.++++-+-.-++|++|+++|+|..
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~ 199 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLISA 199 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe
Confidence 478999999999999999999999999999985
No 173
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=88.37 E-value=0.74 Score=35.71 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=40.1
Q ss_pred HHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecc
Q 033931 47 TYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISA 95 (108)
Q Consensus 47 t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k 95 (108)
...+|+.-+..-..+|...||++|+|+-+-.++-|+.|++.|++..-..
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i~~~~ 54 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVP 54 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEET
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEec
Confidence 3445555555667899999999999999999999999999999864433
No 174
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=88.29 E-value=0.66 Score=31.57 Aligned_cols=45 Identities=9% Similarity=0.175 Sum_probs=36.2
Q ss_pred eeechhhhhhhh-----cccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 59 KLITPSILSDRL-----RINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 59 k~ITps~vserl-----kI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
.-+|+..|.+++ .|..+-.-+.|+.|++.|+|..+.-......|-
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 82 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFE 82 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSSCEEE
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 357888888888 788888899999999999999986544444554
No 175
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=88.06 E-value=0.91 Score=31.55 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=36.9
Q ss_pred eechhhhhhhh-----cccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 60 LITPSILSDRL-----RINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 60 ~ITps~vserl-----kI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
-+|...|.+++ .|..+-.-+.|+.|++.|+|..+.-..+...|-
T Consensus 42 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 90 (150)
T 2xig_A 42 HLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETSKSGRRYE 90 (150)
T ss_dssp CBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEE
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 58889998888 688888999999999999999986655555664
No 176
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=88.05 E-value=0.91 Score=31.54 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=35.4
Q ss_pred eeechhhhhhhh-----cccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 59 KLITPSILSDRL-----RINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 59 k~ITps~vserl-----kI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
.-+|...|.+++ .|..+-.-+.|+.|++.|+|..+.-......|-
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 81 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFE 81 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 357888888887 678888889999999999999986544445564
No 177
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=87.94 E-value=0.76 Score=31.55 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=30.4
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
+|...||+.++++-.-.-++|++|+++|+|..
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 178 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELAREGYIRS 178 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 79999999999999999999999999999984
No 178
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=87.83 E-value=0.58 Score=35.41 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=33.0
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
-+|++.||+++++.-|-.=++|..|+++|+|....
T Consensus 174 ~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~ 208 (250)
T 1p4x_A 174 IVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKER 208 (250)
T ss_dssp CEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEE
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeC
Confidence 48999999999999999999999999999999873
No 179
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=87.81 E-value=0.86 Score=31.33 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=30.9
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
-+|...||+.++++-+-.-++|++|+++|+|..
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 201 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKL 201 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 479999999999999999999999999999975
No 180
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=87.58 E-value=0.73 Score=31.87 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=30.5
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
+|...||+.++++-+-.-++|++|+++|+|..
T Consensus 179 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 210 (227)
T 3dkw_A 179 VAKQLVAGHLSIQPETFSRIMHRLGDEGIIHL 210 (227)
T ss_dssp SCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEe
Confidence 78999999999999999999999999999975
No 181
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=87.48 E-value=0.93 Score=31.07 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=31.5
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
--+|...||+.++++-+-.-++|++|+++|+|..
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 195 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEEGVVRL 195 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 4479999999999999999999999999999975
No 182
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=87.47 E-value=0.32 Score=34.12 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=33.7
Q ss_pred CCCe--eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecc-cceeEEEec
Q 033931 56 PKFK--LITPSILSDRLRINGSLARRAIKDLMARGSIRMISA-HASQQIYTR 104 (108)
Q Consensus 56 pk~k--~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k-~~~q~IYtr 104 (108)
+.|. .+|...||+.++|+.+ .||.-++.|||.++.. .+....|+.
T Consensus 10 k~M~~~~~~I~evA~~~gvs~~----tLR~Ye~~Gll~p~~r~~~g~R~Y~~ 57 (148)
T 3gpv_A 10 KRMNDMYYTIGQVAKMQHLTIS----QIRYYDKQGLFPFLQRNEKGDRIFNE 57 (148)
T ss_dssp -----CCBCHHHHHHHTTCCHH----HHHHHHHTTCCTTCEECTTCCEEBCH
T ss_pred CccccCceeHHHHHHHHCcCHH----HHHHHHHCCCCCCCcCCCCCCeecCH
Confidence 4455 7999999999999865 5889999999986533 467788875
No 183
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=87.45 E-value=0.61 Score=31.24 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=34.0
Q ss_pred CCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 56 PKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 56 pk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
|.-. ++++.|++++.+..|--.+.|..|+..|||....
T Consensus 33 ~g~~-~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~~ 70 (96)
T 2obp_A 33 GATP-WSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSV 70 (96)
T ss_dssp TCCC-CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCC-cCHHHHHHHhCCchhhHHHHHHHHHHCCCEEeec
Confidence 5544 4999999999999999999999999999999763
No 184
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=87.19 E-value=1.1 Score=25.85 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=30.9
Q ss_pred eeechhhhhhhh-----cccHHHHHHHHHHHHHcCCeeEecccceeEEE
Q 033931 59 KLITPSILSDRL-----RINGSLARRAIKDLMARGSIRMISAHASQQIY 102 (108)
Q Consensus 59 k~ITps~vserl-----kI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IY 102 (108)
..+|...|++.| +|+.+-.++-|+ +-|+| .+........|
T Consensus 18 ~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v-~~~~~~~~~~Y 62 (64)
T 2p5k_A 18 EIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLV-KVPTNNGSYKY 62 (64)
T ss_dssp CCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCE-EEEETTTEEEE
T ss_pred CCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCE-EEecCCCceee
Confidence 468999999999 999988887777 55899 66555555556
No 185
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=86.96 E-value=0.47 Score=37.39 Aligned_cols=34 Identities=9% Similarity=0.040 Sum_probs=32.4
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
=+|+..||+++++.-+-.-++|..|+++|+|...
T Consensus 420 ~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~ 453 (487)
T 1hsj_A 420 EISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKK 453 (487)
T ss_dssp EEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCE
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 4899999999999999999999999999999887
No 186
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=86.77 E-value=0.72 Score=31.43 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=30.8
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
-+|...||+-++++-.-.-++|++|+++|+|..
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 196 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHV 196 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 479999999999999999999999999999975
No 187
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=86.70 E-value=1.3 Score=33.24 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=41.7
Q ss_pred ceeCHHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 41 VLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 41 V~~dk~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
..+..+-|=++.-+. + .-|+...||++|+++-+-.+.+|+.|.++|+|..-
T Consensus 13 ls~s~EdYLk~I~~L-~-~~V~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~~~ 63 (200)
T 2p8t_A 13 PEYTVEDVLAVIFLL-K-EPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSK 63 (200)
T ss_dssp -CCCHHHHHHHHHHT-T-SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCCHHHHHHHHHHH-c-CCccHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 455666676666666 2 45999999999999999999999999999999653
No 188
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=86.67 E-value=0.71 Score=29.60 Aligned_cols=42 Identities=7% Similarity=0.160 Sum_probs=35.3
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEec
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTR 104 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr 104 (108)
.|++.||+++++.-|-..+-|+.|++. +|..-. .++...|.-
T Consensus 42 ~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~-~gr~~~y~l 83 (99)
T 2zkz_A 42 LNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNR-QGLEIYYSI 83 (99)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEE-ETTEEEEEC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheE-eCcEEEEEE
Confidence 799999999999999999999999999 887644 455566653
No 189
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=86.62 E-value=1.2 Score=32.43 Aligned_cols=37 Identities=35% Similarity=0.334 Sum_probs=33.4
Q ss_pred CCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 57 KFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 57 k~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
...-+|.+.+|++++|+-|-.-+.|+.||+.|||...
T Consensus 24 ~~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~ 60 (230)
T 3cta_A 24 NRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRT 60 (230)
T ss_dssp SEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3456789999999999999999999999999999875
No 190
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=86.54 E-value=1.1 Score=31.12 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=30.4
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
+|...||+.++++-.-.-++|++|.++|+|..
T Consensus 178 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 209 (227)
T 3d0s_A 178 LTQEEIAQLVGASRETVNKALADFAHRGWIRL 209 (227)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe
Confidence 79999999999999999999999999999976
No 191
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=86.44 E-value=0.99 Score=33.68 Aligned_cols=36 Identities=11% Similarity=0.113 Sum_probs=33.1
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
.-+|.+.||+++++.-|-+.++|+.|++.|+|....
T Consensus 37 ~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~ 72 (260)
T 2o0y_A 37 PTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRA 72 (260)
T ss_dssp SSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECC
Confidence 458999999999999999999999999999998753
No 192
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=86.27 E-value=0.59 Score=37.05 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=35.5
Q ss_pred CCCCeeechhhhhhhh--cccHHHHHHHHHHHHHcCCeeEecc
Q 033931 55 APKFKLITPSILSDRL--RINGSLARRAIKDLMARGSIRMISA 95 (108)
Q Consensus 55 Vpk~k~ITps~vserl--kI~~SlAr~~Lr~L~~kGlIk~V~k 95 (108)
+-...-|+..+||++| +++-.-.|+-|.+||+.|+|..+..
T Consensus 31 l~~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~r~Hg 73 (338)
T 1stz_A 31 IENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPHT 73 (338)
T ss_dssp HHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECCSS
T ss_pred HHcCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEccC
Confidence 4455779999999999 8888899999999999999988543
No 193
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=86.10 E-value=0.14 Score=39.94 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 50 KLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 50 Kl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
.|+..+-...-+|...||++|++.-+-.|+.|+.|+++|+|..
T Consensus 24 ~iL~~l~~~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv~~ 66 (345)
T 2o0m_A 24 QILRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQLNLIEP 66 (345)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4555555567799999999999999999999999999999973
No 194
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=86.06 E-value=0.81 Score=31.69 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=30.6
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
+|...||+.++++-+-.-++|++|+++|+|..
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 219 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQADGLLHA 219 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE
Confidence 68999999999999999999999999999985
No 195
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=86.00 E-value=1.6 Score=29.03 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=31.7
Q ss_pred chhhhhhhh--------cccHHHHHHHHHHHHHcCCeeEec----ccceeEEEe
Q 033931 62 TPSILSDRL--------RINGSLARRAIKDLMARGSIRMIS----AHASQQIYT 103 (108)
Q Consensus 62 Tps~vserl--------kI~~SlAr~~Lr~L~~kGlIk~V~----k~~~q~IYt 103 (108)
+.|.|..++ .|+-+.-..+|+.|++.|+|.... ..++..+|.
T Consensus 27 ~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~ 80 (116)
T 3f8b_A 27 YVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYR 80 (116)
T ss_dssp CHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEE
Confidence 566776665 799999999999999999999873 234555664
No 196
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=85.82 E-value=0.83 Score=31.86 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=31.0
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
-+|...||+.++++-.-.-++|++|+++|+|..
T Consensus 180 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 212 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRTLSTFVSERMLAL 212 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEee
Confidence 479999999999999999999999999999975
No 197
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=85.68 E-value=1.8 Score=30.16 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=33.9
Q ss_pred echhhhhhhh--------cccHHHHHHHHHHHHHcCCeeEecc----cceeEEEe
Q 033931 61 ITPSILSDRL--------RINGSLARRAIKDLMARGSIRMISA----HASQQIYT 103 (108)
Q Consensus 61 ITps~vserl--------kI~~SlAr~~Lr~L~~kGlIk~V~k----~~~q~IYt 103 (108)
.+.+.|++.+ .|+-+.--.+|+.|++.|+|..... .++-.+|.
T Consensus 55 ~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~ 109 (145)
T 1xma_A 55 SYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYR 109 (145)
T ss_dssp EEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEE
T ss_pred CCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEE
Confidence 6888888887 5999999999999999999988732 34555663
No 198
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=85.62 E-value=0.79 Score=35.29 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=37.3
Q ss_pred CCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEE
Q 033931 57 KFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIY 102 (108)
Q Consensus 57 k~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IY 102 (108)
..-+||++.|++.+++....|+.+|.+|+..|++=.=........|
T Consensus 178 ~~g~vt~~~L~~~lgW~~~Ra~~~L~~l~~~G~lwvD~q~~~e~~Y 223 (233)
T 1u5t_A 178 ILGYSSISLLKANLGWEAVRSKSALDEMVANGLLWIDYQGGAEALY 223 (233)
T ss_dssp TTSCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEEECSSSSSCEE
T ss_pred hcCcCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeCCCCCccce
Confidence 4678999999999999999999999999999998554443223444
No 199
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=85.23 E-value=0.88 Score=33.84 Aligned_cols=44 Identities=16% Similarity=0.052 Sum_probs=36.5
Q ss_pred HHHhhCCCC-eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 50 KLLSEAPKF-KLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 50 Kl~KEVpk~-k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
+|+..+-.. .-+|.+.||+++++.-|-+.++|+.|++.|+|...
T Consensus 18 ~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~ 62 (257)
T 2g7u_A 18 AVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGS 62 (257)
T ss_dssp HHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 344444432 45899999999999999999999999999999874
No 200
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=84.87 E-value=1.6 Score=29.95 Aligned_cols=45 Identities=16% Similarity=0.349 Sum_probs=35.8
Q ss_pred eeechhhhhhhh-----cccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 59 KLITPSILSDRL-----RINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 59 k~ITps~vserl-----kI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
.-+|...|.+++ +|+.+---+.|+.|++.|+|..+.-.....-|-
T Consensus 28 ~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~ 77 (139)
T 3mwm_A 28 EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYR 77 (139)
T ss_dssp SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEE
Confidence 367888888887 578888889999999999999986655555564
No 201
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=84.78 E-value=0.97 Score=32.19 Aligned_cols=32 Identities=13% Similarity=0.256 Sum_probs=30.5
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
+|...||+.++++-.-.-++|++|+++|+|..
T Consensus 194 lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~ 225 (243)
T 3la7_A 194 LSHQAIAEAIGSTRVTVTRLLGDLREKKMISI 225 (243)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEE
Confidence 68999999999999999999999999999985
No 202
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=84.71 E-value=1.5 Score=31.70 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=30.8
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
-+|...||+.++++-.-.-++|++|+++|+|..
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~ 249 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLISA 249 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 378999999999999999999999999999985
No 203
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=84.65 E-value=0.67 Score=30.50 Aligned_cols=40 Identities=5% Similarity=0.055 Sum_probs=32.4
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEec-ccceeEEEec
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMIS-AHASQQIYTR 104 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~-k~~~q~IYtr 104 (108)
+|+..+|+.++|+.+ .||..++.|+|.+.. ..++...|+.
T Consensus 3 ~~i~e~A~~~gvs~~----tLR~ye~~Gll~p~~~~~~g~R~Y~~ 43 (109)
T 1r8d_A 3 YQVKQVAEISGVSIR----TLHHYDNIELLNPSALTDAGYRLYSD 43 (109)
T ss_dssp BCHHHHHHHHSCCHH----HHHHHHHTTSSCCSEECTTCCEEBCH
T ss_pred ccHHHHHHHHCcCHH----HHHHHHHCCCCCCCeECCCCCeeeCH
Confidence 689999999998865 578899999999875 3566678875
No 204
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=84.54 E-value=1.4 Score=34.30 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=33.4
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
.-+|.+.||++++++-+-.-+++++|++.|+|..+.
T Consensus 32 ~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~~~ 67 (380)
T 2hoe_A 32 SPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEEK 67 (380)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeec
Confidence 348999999999999999999999999999999874
No 205
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=84.44 E-value=1.1 Score=31.29 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=31.0
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
-+|...||+.++++-.-.-++|++|.++|+|..
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~ 207 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEV 207 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe
Confidence 379999999999999999999999999999975
No 206
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=84.41 E-value=0.93 Score=33.92 Aligned_cols=43 Identities=16% Similarity=0.082 Sum_probs=35.8
Q ss_pred HHhhCCC-CeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 51 LLSEAPK-FKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 51 l~KEVpk-~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
|+.-+-. -.-+|.+.||+++++.-|-+.++|+.|++.|+|...
T Consensus 26 iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~ 69 (265)
T 2ia2_A 26 VIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATD 69 (265)
T ss_dssp HHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEES
T ss_pred HHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 4444432 245899999999999999999999999999999874
No 207
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=84.22 E-value=1.1 Score=31.94 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=36.5
Q ss_pred HHHHHhhCC-CCeeechhhhhhhhcccHHHHHHHHHHHHHcCC-eeE
Q 033931 48 YDKLLSEAP-KFKLITPSILSDRLRINGSLARRAIKDLMARGS-IRM 92 (108)
Q Consensus 48 ~dKl~KEVp-k~k~ITps~vserlkI~~SlAr~~Lr~L~~kGl-Ik~ 92 (108)
..+|+..+. +-..+|...||++|+|+-+-.++=|+.|++.|+ |.-
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 444555444 235699999999999999999999999999999 753
No 208
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=84.21 E-value=1.1 Score=31.12 Aligned_cols=33 Identities=9% Similarity=0.056 Sum_probs=30.7
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
-+|...||+-++++-.-.-++|++|+++|+|..
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 199 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILER 199 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE
Confidence 378999999999999999999999999999965
No 209
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=83.99 E-value=1 Score=30.86 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=30.8
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
-+|...||+.++++-.-.-++|++|+++|+|..
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 171 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIAT 171 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 378999999999999999999999999999975
No 210
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=83.98 E-value=1.2 Score=33.60 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=35.8
Q ss_pred CeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEE
Q 033931 58 FKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQI 101 (108)
Q Consensus 58 ~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~I 101 (108)
..-.|+..||+++++.-+.-...|.+|.+.|+|+. .+..+..|
T Consensus 176 ~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~-~~~~~~~~ 218 (232)
T 2qlz_A 176 NGRATVEELSDRLNLKEREVREKISEMARFVPVKI-INDNTVVL 218 (232)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEE-ETTTEEEE
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEE-ecCCeEEe
Confidence 36679999999999999999999999999999983 44444433
No 211
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=83.92 E-value=0.99 Score=31.43 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=30.4
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
+|...||+.++++-.-.-++|++|+++|+|..
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~ 195 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISR 195 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEE
Confidence 79999999999999999999999999999976
No 212
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=83.66 E-value=0.65 Score=31.12 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=50.0
Q ss_pred hhccceeCHHHHHHHHhhCCC----CeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 37 VNNMVLFDQATYDKLLSEAPK----FKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 37 ~nn~V~~dk~t~dKl~KEVpk----~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
+..-++|..++|+++...+-. ..-||++.+-|.++++-..|-.+|+.|-+.|+...+.
T Consensus 53 i~~~~~~~~~~~~~~~~~l~~~~~~~~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~TrR~g 114 (121)
T 2pjp_A 53 IVKDRYYRNDRIVEFANMIRDLDQECGSTCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRG 114 (121)
T ss_dssp EETTEEEEHHHHHHHHHHHHHHHHHHSSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEET
T ss_pred ecCCceECHHHHHHHHHHHHHHHHHCCCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeEeeC
Confidence 345678889999888877765 3779999999999999999999999999999999874
No 213
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=83.35 E-value=1.2 Score=31.63 Aligned_cols=32 Identities=6% Similarity=0.147 Sum_probs=30.5
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
+|...||+.++++-.-.-++|++|+++|+|..
T Consensus 178 ~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~ 209 (250)
T 3e6c_C 178 LSQKSIGEITGVHHVTVSRVLASLKRENILDK 209 (250)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEe
Confidence 69999999999999999999999999999976
No 214
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=83.21 E-value=2.5 Score=28.30 Aligned_cols=43 Identities=7% Similarity=0.112 Sum_probs=33.5
Q ss_pred echhhhhhhh------cccHHHHHHHHHHHHHcCCeeEecc----cceeEEEe
Q 033931 61 ITPSILSDRL------RINGSLARRAIKDLMARGSIRMISA----HASQQIYT 103 (108)
Q Consensus 61 ITps~vserl------kI~~SlAr~~Lr~L~~kGlIk~V~k----~~~q~IYt 103 (108)
.+.|.|..++ .|+-+.--.+|+.|++.|+|..... .++..+|.
T Consensus 25 ~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~ 77 (117)
T 4esf_A 25 TYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYS 77 (117)
T ss_dssp BCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEE
T ss_pred CCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEE
Confidence 5678888887 7999999999999999999998742 23455664
No 215
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=83.18 E-value=1.9 Score=29.77 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=32.8
Q ss_pred echhhhhhhh-----cccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 61 ITPSILSDRL-----RINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 61 ITps~vserl-----kI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
+|...|-+++ .|+.+---+.|+.|++.|+|..+.-..+..-|-
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~ 81 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGAPTYH 81 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEE
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 5777776666 567777789999999999999996555555564
No 216
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=83.14 E-value=0.82 Score=34.64 Aligned_cols=35 Identities=14% Similarity=0.047 Sum_probs=30.8
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
-+|.+.||+++++.-|-+-++|+.|++.|++....
T Consensus 45 ~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~ 79 (275)
T 3mq0_A 45 DLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSA 79 (275)
T ss_dssp CEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECC
Confidence 48999999999999999999999999999998754
No 217
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=83.02 E-value=1.2 Score=35.16 Aligned_cols=44 Identities=11% Similarity=0.063 Sum_probs=36.9
Q ss_pred HHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 51 LLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 51 l~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
|+..+-...-+|.+.||++++++-+-..+++++|++.|+|....
T Consensus 44 il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~~~ 87 (429)
T 1z05_A 44 VYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHETT 87 (429)
T ss_dssp HHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 33333344458999999999999999999999999999999874
No 218
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=82.98 E-value=1.5 Score=27.96 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=30.7
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
.|.-.||.+|+.....||.+|..|.+.|-+..-
T Consensus 19 MTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRKR 51 (68)
T 3i71_A 19 MTAGEVAAHFGWPLEKARNALEQLFSAGTLRKR 51 (68)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHhCCcHHHHHHHHHHHHhcchhhhh
Confidence 589999999999999999999999999998764
No 219
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=82.96 E-value=3 Score=27.15 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=28.4
Q ss_pred hhhhhcccHHHHHHHHHHHHHcCCeeEecc---cceeEEEe
Q 033931 66 LSDRLRINGSLARRAIKDLMARGSIRMISA---HASQQIYT 103 (108)
Q Consensus 66 vserlkI~~SlAr~~Lr~L~~kGlIk~V~k---~~~q~IYt 103 (108)
|++.++|+-+.--.+|+.|++.|+|..... .++..+|.
T Consensus 32 l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~ 72 (108)
T 3l7w_A 32 IKLIASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYH 72 (108)
T ss_dssp HTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEE
T ss_pred HHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEE
Confidence 333468999999999999999999988732 23455664
No 220
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=82.92 E-value=1.2 Score=31.44 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=30.6
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
-+|...||+.++++-.-.-++|++|+++|+|..
T Consensus 186 ~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~ 218 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKTLNELQDNGLIEL 218 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEE
T ss_pred cCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEe
Confidence 379999999999999999999999999999975
No 221
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=82.73 E-value=2.1 Score=27.50 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=35.1
Q ss_pred hhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 64 SILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 64 s~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
..++.||..+.+.-++.|+.|-+++.|.....+.....|.
T Consensus 37 ~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y~Y~ 76 (77)
T 3tdu_C 37 TQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYL 76 (77)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEEC
T ss_pred HHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceEEEe
Confidence 4567899999999999999999999999987777777774
No 222
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=82.66 E-value=1.1 Score=32.47 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.4
Q ss_pred ccHHHHHHHHHHHHHcCCeeEec
Q 033931 72 INGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 72 I~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
=++|++|.+|+.||+-|+|....
T Consensus 96 asg~iiR~~LQqLE~~g~vek~~ 118 (144)
T 3u5c_T 96 ASGSINRKVLQALEKIGIVEISP 118 (144)
T ss_dssp CCHHHHHHHHHHHHHTTSEECCS
T ss_pred cCcHHHHHHHHHHHHCCCeeecC
Confidence 36799999999999999998764
No 223
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=82.65 E-value=1.2 Score=32.43 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.2
Q ss_pred cccHHHHHHHHHHHHHcCCeeEec
Q 033931 71 RINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 71 kI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
+=++|++|.+|++||+-|+|....
T Consensus 97 ~asg~iiR~~LQqLE~~g~Vek~~ 120 (146)
T 3iz6_S 97 KSSGAISRNILQQLQKMGIIDVDP 120 (146)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEET
T ss_pred CCCcHHHHHHHHHHHHCCCeEecC
Confidence 346899999999999999998864
No 224
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=82.28 E-value=0.99 Score=31.86 Aligned_cols=43 Identities=28% Similarity=0.387 Sum_probs=35.0
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEecc
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRA 105 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr~ 105 (108)
.++|...+|+.++|+.+ .||.-++.|+|.+.-..++...|+..
T Consensus 10 ~~~~i~e~A~~~gvs~~----TLR~ye~~Gll~p~r~~~g~R~Y~~~ 52 (154)
T 2zhg_A 10 ALLTPGEVAKRSGVAVS----ALHFYESKGLITSIRNSGNQRRYKRD 52 (154)
T ss_dssp CCBCHHHHHHHHTSCHH----HHHHHHHTTSSCCEECTTSCEEBCTT
T ss_pred cCCCHHHHHHHHCcCHH----HHHHHHHcCCCCcccCCCCCEEeCHH
Confidence 47999999999999865 68999999999986444667788753
No 225
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=82.13 E-value=1.1 Score=35.02 Aligned_cols=44 Identities=5% Similarity=0.102 Sum_probs=37.7
Q ss_pred HHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 50 KLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 50 Kl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
+|+.-+-...-+|-+.||++++++-+-...++++|++.|+|..+
T Consensus 20 ~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 20 AVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEee
Confidence 34444445556999999999999999999999999999999986
No 226
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=82.08 E-value=1.4 Score=29.18 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=32.8
Q ss_pred echhhhhhhhc--------ccH-HHHHHHHHHHHHcCCeeEecc---cceeEEEe
Q 033931 61 ITPSILSDRLR--------ING-SLARRAIKDLMARGSIRMISA---HASQQIYT 103 (108)
Q Consensus 61 ITps~vserlk--------I~~-SlAr~~Lr~L~~kGlIk~V~k---~~~q~IYt 103 (108)
.+.|.|++.+. |+- +.--.+|+.|++.|+|..... ..+..+|.
T Consensus 27 ~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~ 81 (118)
T 2esh_A 27 SHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYR 81 (118)
T ss_dssp BCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEE
T ss_pred CCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEE
Confidence 57888888884 777 777899999999999988742 34455664
No 227
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=81.88 E-value=0.79 Score=30.83 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=33.6
Q ss_pred CCeeechhhhhh-hhcccHHHHHHHHHHHHHcCCeeEecc
Q 033931 57 KFKLITPSILSD-RLRINGSLARRAIKDLMARGSIRMISA 95 (108)
Q Consensus 57 k~k~ITps~vse-rlkI~~SlAr~~Lr~L~~kGlIk~V~k 95 (108)
+...+|++.|+| .+.+.-|.--+.|+-|+++|+|. .+.
T Consensus 27 ~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe-~~~ 65 (95)
T 1bja_A 27 KKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE-KSG 65 (95)
T ss_dssp HSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE-EET
T ss_pred HCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee-cCC
Confidence 334899999999 99999999999999999999998 443
No 228
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=81.80 E-value=0.27 Score=36.14 Aligned_cols=48 Identities=17% Similarity=0.064 Sum_probs=41.9
Q ss_pred HHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 46 ATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 46 ~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
+=.+.|+..+.....+|...||+.|+++.+-.|+=|.||...||+..+
T Consensus 12 eR~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~l~~r~ 59 (190)
T 4a0z_A 12 KRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPELRKRI 59 (190)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcchhhHh
Confidence 345677777888899999999999999999999999999999987654
No 229
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=81.63 E-value=0.96 Score=29.76 Aligned_cols=40 Identities=10% Similarity=0.122 Sum_probs=31.8
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEec-ccceeEEEec
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMIS-AHASQQIYTR 104 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~-k~~~q~IYtr 104 (108)
+|+..+|+.++|+.+ .||.-++.|+|.+.. ..++...|+.
T Consensus 2 ~~i~e~A~~~gvs~~----tLR~ye~~Gll~p~~r~~~g~R~Y~~ 42 (108)
T 2vz4_A 2 YSVGQVAGFAGVTVR----TLHHYDDIGLLVPSERSHAGHRRYSD 42 (108)
T ss_dssp BCHHHHHHHHTCCHH----HHHHHHHHTSSCCSEECSSCCEEBCH
T ss_pred CCHHHHHHHHCcCHH----HHHHHHHCCCCCCCccCCCCCeecCH
Confidence 578899999998765 578899999999875 3456778875
No 230
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=81.45 E-value=0.29 Score=41.49 Aligned_cols=54 Identities=9% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEec
Q 033931 50 KLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTR 104 (108)
Q Consensus 50 Kl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr 104 (108)
.|+.-+..+.-||-+.|++.++++..-|+++|+.|.++|+|..+-.. +-.-|..
T Consensus 520 ~I~~~l~~~g~it~~di~~l~~ls~~qa~~~L~~Lv~~G~l~~~G~g-r~t~Y~~ 573 (583)
T 3lmm_A 520 AAMLWLSEVGDLATSDLMAMCGVSRGTAKACVDGLVDEERVVAVGGG-RSRRYRL 573 (583)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeCCC-CceEEEE
Confidence 45555566788999999999999999999999999999999987543 4445543
No 231
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=80.94 E-value=3.7 Score=27.30 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=33.6
Q ss_pred echhhhhhhhc------ccHHHHHHHHHHHHHcCCeeEecc----cceeEEEe
Q 033931 61 ITPSILSDRLR------INGSLARRAIKDLMARGSIRMISA----HASQQIYT 103 (108)
Q Consensus 61 ITps~vserlk------I~~SlAr~~Lr~L~~kGlIk~V~k----~~~q~IYt 103 (108)
.+.|.|++++. |+-+.--.+|+.|++.|+|..... .++..+|.
T Consensus 23 ~~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~ 75 (115)
T 4esb_A 23 VYGYELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYH 75 (115)
T ss_dssp EEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEE
T ss_pred CCHHHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEE
Confidence 47788888875 899999999999999999987632 34455664
No 232
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=80.83 E-value=1.8 Score=32.11 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=31.4
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
=+|+..||+++++.-.+.++.||.|...|++..
T Consensus 39 ~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~ 71 (335)
T 2r3s_A 39 IESSQSLAQKCQTSERGMRMLCDYLVIIGFMTK 71 (335)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEe
Confidence 489999999999999999999999999999975
No 233
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=80.59 E-value=1.3 Score=33.50 Aligned_cols=34 Identities=18% Similarity=0.085 Sum_probs=32.0
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
=+|+..|++++.+.-+--=.+|..|+++|+|...
T Consensus 50 ~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~ 83 (250)
T 1p4x_A 50 TLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKV 83 (250)
T ss_dssp EEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEE
T ss_pred CcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEec
Confidence 4799999999999999999999999999999887
No 234
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=80.09 E-value=1.2 Score=27.66 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=31.7
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHc-CCeeEeccc-ceeEEEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMAR-GSIRMISAH-ASQQIYTR 104 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~k-GlIk~V~k~-~~q~IYtr 104 (108)
.+|+..+|+.++|+.+ .||.-+++ |++.+.-.. ++...|+.
T Consensus 5 ~~~i~e~A~~~gvs~~----tlR~ye~~~gl~~p~r~~~~g~R~Y~~ 47 (81)
T 2jml_A 5 TLRIRTIARMTGIREA----TLRAWERRYGFPRPLRSEGNNYRVYSR 47 (81)
T ss_dssp CEEHHHHHHTTSTTHH----HHHHHHHHTCCSCCBSSSCSSSCEECH
T ss_pred cccHHHHHHHHCcCHH----HHHHHHHhCCCCCCcCCCCCCeeecCH
Confidence 5899999999998865 57788997 999886433 56677874
No 235
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=79.88 E-value=4.1 Score=27.23 Aligned_cols=43 Identities=9% Similarity=-0.001 Sum_probs=32.9
Q ss_pred echhhhhhhh------cccHHHHHHHHHHHHHcCCeeEecc----cceeEEEe
Q 033931 61 ITPSILSDRL------RINGSLARRAIKDLMARGSIRMISA----HASQQIYT 103 (108)
Q Consensus 61 ITps~vserl------kI~~SlAr~~Lr~L~~kGlIk~V~k----~~~q~IYt 103 (108)
.+.|.|..++ .|+-+.--.+|+.|+++|+|..... .++..+|.
T Consensus 27 ~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~ 79 (116)
T 3hhh_A 27 TYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYR 79 (116)
T ss_dssp BCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEE
T ss_pred CCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEE
Confidence 4677888877 6899999999999999999988642 23455664
No 236
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=79.49 E-value=0.35 Score=38.25 Aligned_cols=42 Identities=21% Similarity=0.265 Sum_probs=35.4
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEec
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTR 104 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr 104 (108)
.|++.||++++|.-|-+..+|+.|+++|+|..... +-..|..
T Consensus 33 ~t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~~g--~p~~y~a 74 (342)
T 3qph_A 33 STAKEISTKSGIPYNRVYDTISSLKLRGFVTEIEG--TPKVYAA 74 (342)
T ss_dssp HHHSCCSSSTTSSSCSCCHHHHHHHHHTSEEEECC--TTCEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcC--ceeEEEE
Confidence 58999999999999999999999999999998733 3345653
No 237
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=79.42 E-value=2.4 Score=29.59 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=27.0
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCC
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGS 89 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGl 89 (108)
+|...||+.++++-.-.-++|++|+++|+
T Consensus 179 ~t~~~iA~~lg~sr~tvsR~l~~L~~~gi 207 (237)
T 3fx3_A 179 YDKMLIAGRLGMKPESLSRAFSRLKAAGV 207 (237)
T ss_dssp SCTHHHHHHTTCCHHHHHHHHHHHGGGTE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCe
Confidence 56789999999999999999999999993
No 238
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=79.21 E-value=2.2 Score=31.99 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=37.4
Q ss_pred HHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 46 ATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 46 ~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
.++|-|. +- -+|+..||+++++.-.+.+++||.|..-|++....
T Consensus 29 glf~~l~-~g----~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~ 72 (332)
T 3i53_A 29 RVADHIA-AG----HRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDG 72 (332)
T ss_dssp THHHHHH-TT----CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred ChHHHHh-cC----CCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecC
Confidence 4566664 32 38999999999999999999999999999998764
No 239
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=78.81 E-value=1.8 Score=31.76 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=35.5
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecc--cceeEEEecc
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMISA--HASQQIYTRA 105 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k--~~~q~IYtr~ 105 (108)
+++|...+|+.++|+. +.||.-++.|||.+... .++.+.|+..
T Consensus 4 ~~~~i~e~a~~~gvs~----~tlr~y~~~gll~p~~~d~~~g~R~y~~~ 48 (278)
T 1r8e_A 4 SYYSIGEVSKLANVSI----KALRYYDKIDLFKPAYVDPDTSYRYYTDS 48 (278)
T ss_dssp CEEEHHHHHHHHTCCH----HHHHHHHHTTSSCCSEECTTTCCEEEETG
T ss_pred CcEeHHHHHHHHCcCH----HHHHHHHHCCCCCCCccCCCCCccccCHH
Confidence 5789999999999875 56899999999998753 5677889864
No 240
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=78.38 E-value=2.3 Score=31.16 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=19.4
Q ss_pred cHHHHHHHHHHHHHcCCeeEe
Q 033931 73 NGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 73 ~~SlAr~~Lr~L~~kGlIk~V 93 (108)
++|++|.+|+.||+-|+|..-
T Consensus 100 sg~iiR~~LQqLE~~g~Vek~ 120 (155)
T 2xzm_T 100 HGKILRWALKSLEDLKIIRKD 120 (155)
T ss_dssp CHHHHHHHHHHHHHTTSEEEC
T ss_pred CcHHHHHHHHHHHHCCCEeec
Confidence 599999999999999999873
No 241
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=78.37 E-value=3.2 Score=31.36 Aligned_cols=44 Identities=23% Similarity=0.197 Sum_probs=36.8
Q ss_pred HHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 46 ATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 46 ~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
.+++-|. +-| +|...||+++++.-.+.++.||.|..-|++....
T Consensus 40 ~i~~~l~-~~~----~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~~ 83 (374)
T 1qzz_A 40 RLVDHLL-AGA----DTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGE 83 (374)
T ss_dssp THHHHHH-TTC----CSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCC
T ss_pred ChHHHHh-CCC----CCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEeC
Confidence 3456663 333 7999999999999999999999999999998753
No 242
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=78.26 E-value=2.2 Score=32.06 Aligned_cols=35 Identities=17% Similarity=0.108 Sum_probs=32.7
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
-+|+..||+++++.-...+++||.|...|++....
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~ 90 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAALGLLTKEG 90 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecC
Confidence 58999999999999999999999999999998753
No 243
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=77.77 E-value=2 Score=30.38 Aligned_cols=33 Identities=24% Similarity=0.111 Sum_probs=28.9
Q ss_pred echhhhhhhhcccHH-HHHHHHHHHHHcCCeeEe
Q 033931 61 ITPSILSDRLRINGS-LARRAIKDLMARGSIRMI 93 (108)
Q Consensus 61 ITps~vserlkI~~S-lAr~~Lr~L~~kGlIk~V 93 (108)
+|...||+.++++-+ -.-++|++|+++|+|..-
T Consensus 170 ~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~ 203 (238)
T 2bgc_A 170 LTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYK 203 (238)
T ss_dssp CCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEec
Confidence 789999999999984 666799999999999763
No 244
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=77.59 E-value=2.7 Score=29.61 Aligned_cols=34 Identities=9% Similarity=0.169 Sum_probs=30.3
Q ss_pred echhhhhhhh--------cccHHHHHHHHHHHHHcCCeeEec
Q 033931 61 ITPSILSDRL--------RINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 61 ITps~vserl--------kI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
.|+|.|+..+ +++-+--...|+.|++.|+|....
T Consensus 16 ~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~ 57 (179)
T 1yg2_A 16 ATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVL 57 (179)
T ss_dssp BCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEe
Confidence 5889999988 799999999999999999998763
No 245
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=77.49 E-value=1.7 Score=30.73 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=29.3
Q ss_pred eeechhhhhhhh-------cccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 59 KLITPSILSDRL-------RINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 59 k~ITps~vserl-------kI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
.-+|...|-+++ +|+.+---+.|+.|++.|+|..+.-.+...-|-
T Consensus 47 ~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~~~~~~~Y~ 98 (162)
T 4ets_A 47 THYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYE 98 (162)
T ss_dssp SCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC-----CCEE
T ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCceEEE
Confidence 456777776655 355666789999999999999985444333343
No 246
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=76.77 E-value=2.6 Score=32.06 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=31.7
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
-+|...||+++++.-.+.+++||.|..-|++..
T Consensus 55 ~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~ 87 (348)
T 3lst_A 55 PRTPAELAAATGTDADALRRVLRLLAVRDVVRE 87 (348)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEe
Confidence 489999999999999999999999999999987
No 247
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=76.74 E-value=2.6 Score=32.46 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=32.8
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
-+|+..||+++++.-...+++||.|..-|++....
T Consensus 71 ~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~ 105 (369)
T 3gwz_A 71 PRTATALAEATGAHEQTLRRLLRLLATVGVFDDLG 105 (369)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeC
Confidence 48999999999999999999999999999998854
No 248
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=76.66 E-value=2.6 Score=31.50 Aligned_cols=44 Identities=14% Similarity=0.030 Sum_probs=36.8
Q ss_pred HHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 46 ATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 46 ~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
.++|-|.. -| +|+..||+++++.-.+.+++||.|..-|++....
T Consensus 32 gi~~~l~~-~~----~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~ 75 (334)
T 2ip2_A 32 GLADLIES-GI----DSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDT 75 (334)
T ss_dssp THHHHHHT-TC----CSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CcHHHHhC-CC----CCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecC
Confidence 34666643 23 7999999999999999999999999999998753
No 249
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=76.06 E-value=1.8 Score=29.63 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=31.3
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEec-ccceeEEEec
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMIS-AHASQQIYTR 104 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~-k~~~q~IYtr 104 (108)
.|...||+.++|+.+ .||.-++.|+|.+.. ..++...|+.
T Consensus 1 ~~I~e~A~~~gvs~~----tLR~ye~~Gll~p~~r~~~g~R~Y~~ 41 (135)
T 1q06_A 1 MNISDVAKITGLTSK----AIRFYEEKGLVTPPMRSENGYRTYTQ 41 (135)
T ss_dssp CCHHHHHHHHTCCHH----HHHHHHHTTCSCCCEECTTSCEECCH
T ss_pred CCHHHHHHHHCcCHH----HHHHHHHCCCCCCCccCCCCCeeeCH
Confidence 367889999988765 588999999999873 3456778875
No 250
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=75.87 E-value=4.5 Score=26.64 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=33.7
Q ss_pred hhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 64 SILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 64 s~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
..++.||..+.++-++.|+.|-+++.|.....+ ...+|.
T Consensus 49 ~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~Yl 87 (88)
T 3o2p_E 49 AQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYAYL 87 (88)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEEEC
T ss_pred HHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeEEee
Confidence 457789999999999999999999999998665 677774
No 251
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=75.71 E-value=2.9 Score=31.79 Aligned_cols=33 Identities=9% Similarity=-0.058 Sum_probs=31.7
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
+|...||+++++.-.+.+++||.|...|++...
T Consensus 65 ~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~ 97 (359)
T 1x19_A 65 KDLATLAADTGSVPPRLEMLLETLRQMRVINLE 97 (359)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHhCcChHHHHHHHHHHHhCCCeEee
Confidence 899999999999999999999999999999875
No 252
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=75.65 E-value=3.1 Score=31.37 Aligned_cols=42 Identities=24% Similarity=0.222 Sum_probs=36.0
Q ss_pred HHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 47 TYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 47 t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
+++.|. +-| +|+..||+++++.-++.++.|+.|...|++...
T Consensus 44 i~~~l~-~~~----~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~ 85 (360)
T 1tw3_A 44 LVDHIL-AGA----RTVKALAARTDTRPEALLRLIRHLVAIGLLEED 85 (360)
T ss_dssp HHHHHH-TTC----CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHh-CCC----CCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEec
Confidence 456663 333 799999999999999999999999999999875
No 253
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=75.64 E-value=2 Score=32.56 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=35.0
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec-ccceeEEEec
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS-AHASQQIYTR 104 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~-k~~~q~IYtr 104 (108)
..+|+..||+.++|+.. .||.-++.|||.|.. ..++.+.|+.
T Consensus 2 ~~~tI~evA~~~gvs~~----TLRyYe~~GLL~p~~~~~~GyR~Y~~ 44 (249)
T 3qao_A 2 NAMQIKELAELTGVSVR----TLHHYDKIGLLVPQKDDWNGYRIYSE 44 (249)
T ss_dssp CCBCHHHHHHHHCCCHH----HHHHHHHTTSSCCEECTTTCCEEBCH
T ss_pred CCCCHHHHHHHHCcCHH----HHHHHHHCCCCCCceECCCCCeeeCH
Confidence 35789999999998765 589999999999986 5677888875
No 254
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=75.44 E-value=4.2 Score=27.15 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=32.3
Q ss_pred echhhhhhhhc------ccHHHHHHHHHHHHHcCCeeEecc----cceeEEEe
Q 033931 61 ITPSILSDRLR------INGSLARRAIKDLMARGSIRMISA----HASQQIYT 103 (108)
Q Consensus 61 ITps~vserlk------I~~SlAr~~Lr~L~~kGlIk~V~k----~~~q~IYt 103 (108)
.+.|.|...+. |+-+.--.+|+.|++.|+|..... .++..+|.
T Consensus 28 ~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~ 80 (117)
T 3elk_A 28 MHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYH 80 (117)
T ss_dssp EEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEE
Confidence 46777777776 777888999999999999987642 24455664
No 255
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=74.87 E-value=1.4 Score=30.70 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=32.1
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEecc-cceeEEEec
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMISA-HASQQIYTR 104 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k-~~~q~IYtr 104 (108)
+|...||+.++|+.+ .||.-++.|||.++.. .++...|+.
T Consensus 3 ~~I~e~A~~~gvs~~----tLR~Ye~~GLl~p~~r~~~g~R~Y~~ 43 (142)
T 3gp4_A 3 LNIKEASEKSGVSAD----TIRYYERIGLIPPIHRNESGVRKFGA 43 (142)
T ss_dssp BCHHHHHHHHTSCHH----HHHHHHHHTSSCCCCBCTTSCBCBCH
T ss_pred CcHHHHHHHHCcCHH----HHHHHHHCCCCCCCcCCCCCCeeeCH
Confidence 688999999998765 5889999999999643 456778874
No 256
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=74.77 E-value=2.7 Score=32.28 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=36.0
Q ss_pred HHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 46 ATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 46 ~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
.++|-|... -.=+|+..||++.++.-...+++||.|..-|++..
T Consensus 39 gifd~L~~~---~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~ 82 (363)
T 3dp7_A 39 GIFQLLSGK---REGYTLQEISGRTGLTRYAAQVLLEASLTIGTILL 82 (363)
T ss_dssp THHHHHHTC---TTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred CHHHHHHhc---CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEe
Confidence 355655541 12389999999999999999999999999999976
No 257
>3e0j_B DNA polymerase subunit delta-3; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=73.27 E-value=3.6 Score=29.48 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=38.3
Q ss_pred eCHHHHHHHHhhCCC-CeeechhhhhhhhcccHHHHHHHHHHHHHc
Q 033931 43 FDQATYDKLLSEAPK-FKLITPSILSDRLRINGSLARRAIKDLMAR 87 (108)
Q Consensus 43 ~dk~t~dKl~KEVpk-~k~ITps~vserlkI~~SlAr~~Lr~L~~k 87 (108)
.|+..++-|..-|-. -++||---||..|+|....|+++|.++.++
T Consensus 2 ~d~~yle~L~~~V~de~k~VTYr~LSr~l~VhvN~AK~mL~ef~~~ 47 (144)
T 3e0j_B 2 ADQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVNQAKQMLYDYVER 47 (144)
T ss_dssp CHHHHHHHHHHHHTTTCCCEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCceEEHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 366677777777666 499999999999999999999999999874
No 258
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=72.93 E-value=4.1 Score=30.95 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=36.6
Q ss_pred HHHHHHHhhCCCCeeechhhhhhhhcc---cHHHHHHHHHHHHHcCCeeEe
Q 033931 46 ATYDKLLSEAPKFKLITPSILSDRLRI---NGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 46 ~t~dKl~KEVpk~k~ITps~vserlkI---~~SlAr~~Lr~L~~kGlIk~V 93 (108)
.++|-|...- .=+|...||+++++ +-.+.+++||.|..-|++...
T Consensus 34 gif~~L~~~~---~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 34 GIADAIHNHG---KPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp THHHHHHHHT---SCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEE
T ss_pred ChHhHHhhcC---CCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEe
Confidence 4566665431 12899999999999 689999999999999999876
No 259
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=72.60 E-value=3.5 Score=31.60 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=31.0
Q ss_pred echhhhhhhhcc------cHHHHHHHHHHHHHcCCeeEe
Q 033931 61 ITPSILSDRLRI------NGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 61 ITps~vserlkI------~~SlAr~~Lr~L~~kGlIk~V 93 (108)
+|+..||+++++ .-.+.+++||.|..-|++...
T Consensus 63 ~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 101 (372)
T 1fp1_D 63 MSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTST 101 (372)
T ss_dssp BCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEec
Confidence 699999999999 789999999999999999876
No 260
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=71.86 E-value=6.8 Score=25.73 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=29.7
Q ss_pred hhhhhhh--cccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 64 SILSDRL--RINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 64 s~vserl--kI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
..|.+++ .++-+---.+|+.|+++|+|.... .++..+|.
T Consensus 32 ~ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~-~~~rk~Y~ 72 (99)
T 2co5_A 32 SEILKRFDIDISDGVLYPLIDSLIDDKILREEE-APDGKVLF 72 (99)
T ss_dssp HHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEEC-CTTSCEEE
T ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHCCCEEEee-CCCcEEEE
Confidence 4556665 588888899999999999999876 44455664
No 261
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=71.85 E-value=1.6 Score=22.94 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=24.4
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcC
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARG 88 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kG 88 (108)
+|...||+.|+|+-+..++.|+...+.|
T Consensus 22 ~s~~~IA~~lgis~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 22 VSLHEMSRKISRSRHCIRVYLKDPVSYG 49 (51)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHCSTTTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHhhHHhcC
Confidence 4899999999999999999988777666
No 262
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=71.32 E-value=0.83 Score=31.82 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=0.0
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
-+|...||+.++++-.-.-++|++|+++|+|..
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~~ 196 (213)
T 1o5l_A 164 PVTLEELSRLFGCARPALSRVFQELEREGYIEK 196 (213)
T ss_dssp ---------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEEE
Confidence 479999999999999999999999999999965
No 263
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=71.28 E-value=5.8 Score=30.95 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=31.5
Q ss_pred CeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 58 FKLITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 58 ~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
-.++|...||++|+|+-+--++.|+.|++.|+...
T Consensus 17 g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~ 51 (323)
T 3rkx_A 17 PNYISGQSIAESLNISRTAVKKVIDQLKLEGCKID 51 (323)
T ss_dssp TSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEE
Confidence 35799999999999999999999999999999444
No 264
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=71.22 E-value=4.9 Score=30.48 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=35.6
Q ss_pred HHHHHHhhCCCCeeechhhhhhhhcc---cHHHHHHHHHHHHHcCCeeEe
Q 033931 47 TYDKLLSEAPKFKLITPSILSDRLRI---NGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 47 t~dKl~KEVpk~k~ITps~vserlkI---~~SlAr~~Lr~L~~kGlIk~V 93 (108)
+++-|...- .=+|+..||+++++ +-.+.+++||.|...|++...
T Consensus 41 if~~L~~~~---~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 87 (352)
T 1fp2_A 41 IPNIIQNHG---KPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEII 87 (352)
T ss_dssp HHHHHHHHT---SCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred hhhhhhhcC---CCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEe
Confidence 455555431 12899999999999 588999999999999999875
No 265
>4hv0_A AVTR; ribbon-helix-helix, DNA, transcription, viral protein; 2.60A {Acidianus filamentous virus 6}
Probab=69.39 E-value=5 Score=27.75 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=29.4
Q ss_pred cceeCHHHHHHHHhhCCCCeeechhhhhhhhcccHH-HHHHHHHHHHH
Q 033931 40 MVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGS-LARRAIKDLMA 86 (108)
Q Consensus 40 ~V~~dk~t~dKl~KEVpk~k~ITps~vserlkI~~S-lAr~~Lr~L~~ 86 (108)
.|+||+++|+.|.+ +|++=++++| |+|.+|++-..
T Consensus 2 NIvIEeslY~~Lke------------lAe~EGvSvSav~RkLL~EyL~ 37 (106)
T 4hv0_A 2 MVTVEEEVYEFLKK------------KAKEEGTSVPAVIRKILKEYFG 37 (106)
T ss_dssp CEEEEHHHHHHHHH------------HHHHTTSCHHHHHHHHHHHHHT
T ss_pred eEEeeHHHHHHHHH------------HHHHcCCCHHHHHHHHHHHHhc
Confidence 47899999999984 6888888876 89999988765
No 266
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=69.31 E-value=6.7 Score=25.89 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=34.7
Q ss_pred hhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 64 SILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 64 s~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
..++.||..+.++-++.|..|-+++.|.....++...+|.
T Consensus 52 ~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d~~~y~Y~ 91 (92)
T 1iuy_A 52 QQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYV 91 (92)
T ss_dssp HHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSCSSEEEEC
T ss_pred HHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCCCCCeeEec
Confidence 3456789999999999999999999999987777788885
No 267
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=68.44 E-value=2 Score=31.11 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=33.6
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecc---cceeEEEe
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMISA---HASQQIYT 103 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k---~~~q~IYt 103 (108)
.=||-+.|++-.+++ +..++++|.++|+|..+-+ ..|-..|.
T Consensus 107 qPiTR~eI~~irGv~---~~~~v~~L~e~glI~e~g~~~~~GRp~ly~ 151 (162)
T 1t6s_A 107 QPVTKGEIQQIRGAS---PDYSIDRLLARGLIEVRGRADSPGRPLQYG 151 (162)
T ss_dssp CSEEHHHHHHHHTCC---CCSHHHHHHHTTSEEEEEECSSTTCCEEEE
T ss_pred CCcCHHHHHHHHCCC---HHHHHHHHHHCCCEEEccccCCCCCCeEEE
Confidence 459999999999999 6789999999999998732 23445565
No 268
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=68.05 E-value=6 Score=29.62 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=39.3
Q ss_pred HHHHHHhhC--CCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEeccc
Q 033931 47 TYDKLLSEA--PKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAH 96 (108)
Q Consensus 47 t~dKl~KEV--pk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~ 96 (108)
..++|.... ..+.--++..|++.+++.-..++.+|+.|...|.|..|...
T Consensus 142 ~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~ 193 (258)
T 1lva_A 142 LLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDE 193 (258)
T ss_dssp HHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSS
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 345555444 22444578899999999999999999999999999999754
No 269
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=67.37 E-value=4.6 Score=31.19 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=35.5
Q ss_pred HHHHHHhhCCCCeeechhhhhhhhcc--cHH---HHHHHHHHHHHcCCeeEec
Q 033931 47 TYDKLLSEAPKFKLITPSILSDRLRI--NGS---LARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 47 t~dKl~KEVpk~k~ITps~vserlkI--~~S---lAr~~Lr~L~~kGlIk~V~ 94 (108)
++|-|... + -.-+|+..||+++++ +-. +.+++||.|..-|++....
T Consensus 45 ifd~L~~~-g-~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~~ 95 (364)
T 3p9c_A 45 LLEILVAA-G-GKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLV 95 (364)
T ss_dssp HHHHHHHT-T-TCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEEE
T ss_pred hHHHHhhc-C-CCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEec
Confidence 55666542 1 123899999999998 554 8999999999999998863
No 270
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=67.23 E-value=8.1 Score=29.65 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=38.6
Q ss_pred HHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEeccc
Q 033931 46 ATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAH 96 (108)
Q Consensus 46 ~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~ 96 (108)
.++|-|... |. =+|...||+++++.-...+++||.|..-|++......
T Consensus 32 glfd~L~~~-~~--p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~~ 79 (353)
T 4a6d_A 32 GVFDLLAEA-PG--PLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETRG 79 (353)
T ss_dssp THHHHHHHS-SS--CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CHHHHHhcC-CC--CCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEeccC
Confidence 456666542 32 3799999999999999999999999999999876543
No 271
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=66.77 E-value=14 Score=24.95 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=33.0
Q ss_pred echhhhhhhh-----cccHHHHHHHHHHHHHcCCeeEec---ccceeEEEe
Q 033931 61 ITPSILSDRL-----RINGSLARRAIKDLMARGSIRMIS---AHASQQIYT 103 (108)
Q Consensus 61 ITps~vserl-----kI~~SlAr~~Lr~L~~kGlIk~V~---k~~~q~IYt 103 (108)
.+.|.|..++ .|+-+.--.+|+.|++.|+|.... ..++..+|.
T Consensus 34 ~~GYei~~~l~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~ 84 (123)
T 3ri2_A 34 AYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYR 84 (123)
T ss_dssp EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEE
T ss_pred CCHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEE
Confidence 4677777774 889999999999999999998763 234455664
No 272
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=66.34 E-value=13 Score=26.63 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=32.7
Q ss_pred eeechhhhhhhhc-ccHHHHHHHHHHHHHcCCeeEec
Q 033931 59 KLITPSILSDRLR-INGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 59 k~ITps~vserlk-I~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
...|+..|++.+. |.-+--++-|+.|++.|+|..+.
T Consensus 44 ~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~ 80 (151)
T 3u1d_A 44 GVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIP 80 (151)
T ss_dssp SCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEee
Confidence 4678899999999 99999999999999999999873
No 273
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=66.28 E-value=5.3 Score=29.91 Aligned_cols=58 Identities=9% Similarity=0.007 Sum_probs=51.1
Q ss_pred hhccceeCHHHHHHHHhhCCC---CeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 37 VNNMVLFDQATYDKLLSEAPK---FKLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 37 ~nn~V~~dk~t~dKl~KEVpk---~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
+..-++|+.+.|+++...+-. ...||++.+=|.++++==.|-.+|+.|-+.|+.+.+.
T Consensus 190 l~~~~~~~~~~~~~~~~~l~~~~~~~~it~a~~Rd~lg~SRK~aIplLE~~Dr~g~TrR~g 250 (258)
T 1lva_A 190 INDEFYWHRQALGEAREVIKNLASTGPFGLAEARDALGSSRKYVLPLLEYLDQVKFTRRVG 250 (258)
T ss_dssp SSSSBEEEHHHHHHHHHHHHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred ecCCeEEcHHHHHHHHHHHHHHHhcCCcCHHHHHHHhCCcHHHHHHHHHHHhhcCceeeeC
Confidence 456689999999988776654 5789999999999999999999999999999999984
No 274
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=65.11 E-value=6.6 Score=27.87 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=38.0
Q ss_pred HHHHHhhCCCCeeechhhhhhhh-----cccHHHHHHHHHHHHHcCCeeEecccceeEEEec
Q 033931 48 YDKLLSEAPKFKLITPSILSDRL-----RINGSLARRAIKDLMARGSIRMISAHASQQIYTR 104 (108)
Q Consensus 48 ~dKl~KEVpk~k~ITps~vserl-----kI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr 104 (108)
.+.|..-+....+.|...|++.| +|+-+--++-|++ -|+++.-..+ ...+|.-
T Consensus 7 ~~~I~~li~~~~~~tq~eL~~~L~~~G~~VtqaTisRDL~e---L~~vKv~~~~-g~~~Y~l 64 (149)
T 1b4a_A 7 HIKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKE---MQLVKVPMAN-GRYKYSL 64 (149)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHH---TTCEEEECSS-SCEEEEC
T ss_pred HHHHHHHHHHCCCccHHHHHHHHHHcCCCcCHHHHHHHHHH---cCCeEEECCC-CCEEEEe
Confidence 44555555678899999999999 7777776755555 4888876644 5568874
No 275
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=64.39 E-value=16 Score=27.01 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=38.4
Q ss_pred hHHhhhccceeCHHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 33 QKEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 33 ~keK~nn~V~~dk~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
-++-+++..+=.++-+-..+++- .+.+||.++|| |+|.+-|++|.=..+ ...+|.
T Consensus 38 I~eiI~~~~I~TQeEL~~~L~~~-Gi~viTQATvS--------------RDIkELglvKv~~~~-G~~~Y~ 92 (180)
T 3v4g_A 38 FKALLKEERFGSQGEIVEALKQE-GFENINQSKVS--------------RMLTKFGAVRTRNAK-MEMVYC 92 (180)
T ss_dssp HHHHHHHTCCCSHHHHHHHHHHT-TCTTCCHHHHH--------------HHHHHTTCEEEECTT-SCEEEE
T ss_pred HHHHHhhCCcCCHHHHHHHHHHC-CCcccCHHHHH--------------HHHHHcCCEEeeCCC-CCEEEE
Confidence 45555555566665555555444 88889999988 899999999976544 456786
No 276
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=64.34 E-value=2.8 Score=31.49 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=26.5
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeEecc-cceeEEEec
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRMISA-HASQQIYTR 104 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k-~~~q~IYtr 104 (108)
.|...+|+.++|+.+ .||..++.|||.+..+ .++...|+.
T Consensus 1 ~~IgevA~~~Gvs~~----TLRyYE~~GLl~p~~R~~~gyR~Y~~ 41 (222)
T 2dg6_A 1 MRLADLSKRSGVSTA----TIKYYLREGLLPPGRQVNATTAEYDE 41 (222)
T ss_dssp CCHHHHHHHHTCCHH----HHHHHHHHTSSCCC---------CCH
T ss_pred CCHHHHHHHHCcCHH----HHHHHHHCCCCCCCeeCCCCceeeCH
Confidence 367889999988765 5889999999999643 456778874
No 277
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=63.25 E-value=5.8 Score=30.19 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=29.4
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEec
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~ 94 (108)
.=||-+.|++-.+++. -.++++|.++|+|..+-
T Consensus 113 QPITR~eI~~irGv~~---~~~v~~Lle~gLI~e~G 145 (219)
T 2z99_A 113 QPVTRARVSAVRGVNV---DAVMRTLLARGLITEVG 145 (219)
T ss_dssp CSEEHHHHHHHHTSCC---HHHHHHHHHTTSEEEEE
T ss_pred CCcCHHHHHHHHCCCH---HHHHHHHHHCCCEEEcc
Confidence 4599999999999997 47999999999999984
No 278
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=63.06 E-value=7.6 Score=28.75 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=40.1
Q ss_pred HHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHH-HHHHcCCeeEeccc
Q 033931 45 QATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIK-DLMARGSIRMISAH 96 (108)
Q Consensus 45 k~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr-~L~~kGlIk~V~k~ 96 (108)
...+..+... .-.-++...+|+.+++.-+.....|+ .|.+.|+|.....+
T Consensus 266 ~~~l~~l~~~--~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g 316 (338)
T 3pfi_A 266 LRYLELLTAA--KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKG 316 (338)
T ss_dssp HHHHHHHHHS--CSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTE
T ss_pred HHHHHHHHHh--cCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCc
Confidence 4455666655 55678899999999999999998888 99999999887543
No 279
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=62.44 E-value=12 Score=29.05 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=32.0
Q ss_pred hhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 65 ILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 65 ~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
.+.+.|+|+-+..|.+|.-|..+|.|.....+++ ..|.
T Consensus 50 ~l~~~~Gi~~~avR~Al~RL~~~G~l~~~~~Gr~-~~Y~ 87 (266)
T 3l09_A 50 SFVERMGLQPQAMRVALHRLKRDGWVESRRLGRV-GFHR 87 (266)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTE-EEEE
T ss_pred HHHHHcCCCchHHHHHHHHHHHCCCeeeeecCCc-ceEE
Confidence 4889999999999999999999999998754444 4665
No 280
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=61.91 E-value=20 Score=23.63 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.5
Q ss_pred hcccHHHHHHHHHHHHHcCCeeEe
Q 033931 70 LRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 70 lkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
++|+-+.--.+|+.|++.|+|...
T Consensus 52 ~~is~gtLY~~L~rLe~~GlI~~~ 75 (115)
T 2dql_A 52 YRLSDTVLYSAIKFLEDNRAITGY 75 (115)
T ss_dssp EECCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCcchHHHHHHHHHHCCCEEEE
Confidence 468888889999999999999876
No 281
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=60.39 E-value=14 Score=26.19 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=41.4
Q ss_pred HHHHHHHhhCCCCeeechhhhhhhhc-ccHHHHHHHHHHHHHcCCeeEeccc----ceeEEEe
Q 033931 46 ATYDKLLSEAPKFKLITPSILSDRLR-INGSLARRAIKDLMARGSIRMISAH----ASQQIYT 103 (108)
Q Consensus 46 ~t~dKl~KEVpk~k~ITps~vserlk-I~~SlAr~~Lr~L~~kGlIk~V~k~----~~q~IYt 103 (108)
++==+|+...-. .=.|+..|++.|+ +..|..-.=|+.|.+-|||..+... .+...|.
T Consensus 23 P~Rl~il~~L~~-~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~ 84 (182)
T 4g6q_A 23 PLRWRITQLLIG-RSLTTRELAELLPDVATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYT 84 (182)
T ss_dssp HHHHHHHHHTTT-SCEEHHHHHHHCTTBCHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEE
Confidence 344456655543 3369999999996 9999888889999999999887432 2345564
No 282
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=60.29 E-value=1.8 Score=37.04 Aligned_cols=60 Identities=18% Similarity=0.301 Sum_probs=0.0
Q ss_pred CHHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 44 DQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 44 dk~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
+.++|+....=|-...-.+.|.|=.||+|...-|-+++.+||+.|+|-+..++..-.|+.
T Consensus 501 ~d~l~~~a~~~v~~~~~~s~s~lqr~~~igynraar~~~~me~~giv~~~~~~~~r~vl~ 560 (574)
T 2iut_A 501 DDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIA 560 (574)
T ss_dssp ------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHhcCCcCHHHHHHHhccChHHHHHHHHHHHHCCCCCCccCCCCceEec
Confidence 356777777666777888999999999999999999999999999999986554334443
No 283
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=60.12 E-value=4.4 Score=34.30 Aligned_cols=43 Identities=19% Similarity=0.093 Sum_probs=35.8
Q ss_pred HHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHH-----cCCeeEe
Q 033931 51 LLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMA-----RGSIRMI 93 (108)
Q Consensus 51 l~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~-----kGlIk~V 93 (108)
|+.-+-...-||...|++.+++.-.-++++|+.|.+ .|+|...
T Consensus 435 iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~ 482 (583)
T 3lmm_A 435 VLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAH 482 (583)
T ss_dssp HHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEE
T ss_pred HHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEe
Confidence 443333445699999999999999999999999999 7899885
No 284
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=59.05 E-value=2 Score=36.09 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 45 QATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 45 k~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
.++|+....=|-...-.+.|.|-.||+|...-|-+++.+||+.|+|-+..++..-.|+.
T Consensus 449 d~l~~~a~~~v~~~~~~s~s~~qr~~~igy~ra~~~~~~~e~~g~v~~~~~~~~r~vl~ 507 (512)
T 2ius_A 449 DPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLA 507 (512)
T ss_dssp -----------------------------------------------------------
T ss_pred cHHHHHHHHHHHhcCCcCHHHHHHHhccChHHHHHHHHHHHHCCCCCCCCCCCCceEcc
Confidence 35666666556667888999999999999999999999999999999886554444544
No 285
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=58.54 E-value=21 Score=22.78 Aligned_cols=48 Identities=15% Similarity=0.177 Sum_probs=39.8
Q ss_pred CCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe-cccceeEEEec
Q 033931 57 KFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI-SAHASQQIYTR 104 (108)
Q Consensus 57 k~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V-~k~~~q~IYtr 104 (108)
-|.-||...||+.|++...-+...|..|...|-|.-- .+-....+|.+
T Consensus 27 ~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~ 75 (84)
T 1ufm_A 27 LYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFET 75 (84)
T ss_dssp SCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECC
T ss_pred hcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCC
Confidence 3899999999999999999999999999998888644 55555555654
No 286
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=56.71 E-value=25 Score=24.16 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=21.8
Q ss_pred hcccHHHHHHHHHHHHHcCCeeEe
Q 033931 70 LRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 70 lkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
++|+-+.-..+|+.|++.|+|...
T Consensus 64 ~~is~gtLYp~L~rLe~~GlI~~~ 87 (138)
T 2e1n_A 64 YRLSDTVLYTALKFLEDEQIISGY 87 (138)
T ss_dssp EECCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCccHHHHHHHHHHHCCCEEEE
Confidence 468999999999999999999886
No 287
>1zel_A Hypothetical protein RV2827C; winged-helix, helix-turn-HELI rickshaw, structural genomics, PSI; 1.93A {Mycobacterium tuberculosis} SCOP: a.4.5.83 d.377.1.1
Probab=55.81 E-value=9.5 Score=30.57 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=41.6
Q ss_pred HHHHHHHhhCCCCeeechhhhhhhh---cccHHHHHHHHHHHHHcCCeeEecccceeEEEec
Q 033931 46 ATYDKLLSEAPKFKLITPSILSDRL---RINGSLARRAIKDLMARGSIRMISAHASQQIYTR 104 (108)
Q Consensus 46 ~t~dKl~KEVpk~k~ITps~vserl---kI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr 104 (108)
+..+.|+.+-+ -++|-..+.+.+ +++-. ++.+|+.|.++|.|. .+-++.-.+..+
T Consensus 20 ~yi~~L~a~Gr--~~FT~~E~~~~l~~~g~~~~-~~~AlrRL~kkG~L~-~~P~rGfyvIVP 77 (298)
T 1zel_A 20 RVVSGLARDRP--VVVTKEDLTQRLTEAGCGRD-PDSAIRELRRIGWLV-QLPVKGTWAFIP 77 (298)
T ss_dssp HHHHHHHHHCC--SSEEHHHHHHHHHHTTCCCC-HHHHHHHHHHHTSEE-ECSSTTEEEECC
T ss_pred HHHHHHHhcCC--EEeeHHHHHHHHhhcCCChH-HHHHHHHHHhCCcee-ccCcCceEEEeC
Confidence 45566665544 468889999999 88888 999999999999997 455566555554
No 288
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=55.57 E-value=8.2 Score=27.85 Aligned_cols=35 Identities=9% Similarity=0.046 Sum_probs=28.2
Q ss_pred CeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEeccc
Q 033931 58 FKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAH 96 (108)
Q Consensus 58 ~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~ 96 (108)
..++|...+||.|+|..+-.++ |...|-|.-|-..
T Consensus 29 ~~~LTv~EVAe~LgVs~srV~~----LIr~G~L~AVr~G 63 (148)
T 2kfs_A 29 EPTYDLPRVAELLGVPVSKVAQ----QLREGHLVAVRRA 63 (148)
T ss_dssp SCEEEHHHHHHHHTCCHHHHHH----HHHTTSCCCEEET
T ss_pred CceEcHHHHHHHhCCCHHHHHH----HHHCCCceEEEEC
Confidence 3799999999999999888765 5567888777554
No 289
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=54.42 E-value=18 Score=25.35 Aligned_cols=32 Identities=22% Similarity=0.152 Sum_probs=25.8
Q ss_pred chhhhhhhh-------cccHHHHHHHHHHHHHcCCeeEe
Q 033931 62 TPSILSDRL-------RINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 62 Tps~vserl-------kI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
+.|.|...+ +|+-+.-..+|+.|++.|+|...
T Consensus 59 ~GYeI~k~l~~~~~~~~is~gtLYp~L~rLE~~GlI~~~ 97 (148)
T 2zfw_A 59 YGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGY 97 (148)
T ss_dssp EHHHHHHHHHHHCTTEECCSHHHHHHHHHHHHTSSEEEE
T ss_pred cHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHCCCEEEE
Confidence 455555554 68888889999999999999886
No 290
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=53.44 E-value=15 Score=26.99 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=33.1
Q ss_pred echhhhhhhh--------cccHHHHHHHHHHHHHcCCeeEecc---cc-eeEEEe
Q 033931 61 ITPSILSDRL--------RINGSLARRAIKDLMARGSIRMISA---HA-SQQIYT 103 (108)
Q Consensus 61 ITps~vserl--------kI~~SlAr~~Lr~L~~kGlIk~V~k---~~-~q~IYt 103 (108)
.+.|.|..++ +++-+---.+|+.|++.|+|..... ++ .-.+|.
T Consensus 50 ~~GYeL~~~l~~~~~~~~~~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~ 104 (204)
T 3l9f_A 50 RSGYEINDILQNQLSYFYDGTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYA 104 (204)
T ss_dssp EEHHHHHHHHHHTSTTTEECCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEE
T ss_pred CCHHHHHHHHHHHhCCccCCCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEE
Confidence 6788888887 6888888999999999999987632 22 345665
No 291
>3qyf_A Crispr-associated protein; helix-turn-helix, antiviral protein, viral resistance, nucle binding domain; 1.90A {Sulfolobus solfataricus}
Probab=52.10 E-value=7.6 Score=31.28 Aligned_cols=45 Identities=13% Similarity=0.049 Sum_probs=32.6
Q ss_pred ceeCHHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 41 VLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 41 V~~dk~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
+-||.+.++ +++|+-..-.-+|..+|+.++|. +++|++.|+|...
T Consensus 207 i~ld~~~~~-~lk~~~~~g~~~~~~la~~lgi~-------v~~L~~~gli~~~ 251 (324)
T 3qyf_A 207 ITIRPKYLD-WLIRFAISGYTLSEKRAEELGIP-------VRLLEAKMLVERK 251 (324)
T ss_dssp EEECHHHHH-HHHHHHHHCSEEEHHHHHHTTCC-------HHHHHHTTSEEEE
T ss_pred cccCHHHHH-HHHHHHhcCCCCHHHHHHHhCCC-------HHHHHHCCCeEec
Confidence 445665554 44566522356788999999999 5699999999875
No 292
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=50.58 E-value=18 Score=25.24 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=27.9
Q ss_pred chhhhhhhhccc-HHHHHHHHHHHHHcCCeeEe
Q 033931 62 TPSILSDRLRIN-GSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 62 Tps~vserlkI~-~SlAr~~Lr~L~~kGlIk~V 93 (108)
|...||++++|+ -+-....++.|++.|.|..-
T Consensus 27 s~~elA~~lgiss~~tv~~~~~~l~~~~~l~~~ 59 (202)
T 1jhf_A 27 TRAEIAQRLGFRSPNAAEEHLKALARKGVIEIV 59 (202)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEEC
T ss_pred cHHHHHHHhCCCChHHHHHHHHHHHHCCCceeC
Confidence 899999999998 77778889999999988653
No 293
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=50.23 E-value=17 Score=22.50 Aligned_cols=47 Identities=9% Similarity=0.013 Sum_probs=32.9
Q ss_pred eCHHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCC
Q 033931 43 FDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGS 89 (108)
Q Consensus 43 ~dk~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGl 89 (108)
++.+.-..+...+-...=.|...||..|+|+-+.-++-++.....|.
T Consensus 6 ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 6 YSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp CCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHCCCST
T ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHHhhcCc
Confidence 34444445555543211358999999999999999999988877665
No 294
>1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A
Probab=49.35 E-value=38 Score=28.27 Aligned_cols=60 Identities=8% Similarity=-0.092 Sum_probs=46.3
Q ss_pred CHHHHHHHHhhC----CCC-eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 44 DQATYDKLLSEA----PKF-KLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 44 dk~t~dKl~KEV----pk~-k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
+.+.++.++.|| |+| +++||..+.++|.=.-+-...+..-|++.|+-..-..+.+..|-.
T Consensus 50 n~~~l~~~l~~vs~p~~~ygk~Lt~~e~~~~f~ps~~~v~~V~~wL~~~G~~~~~~~~~~~~i~~ 114 (552)
T 1t1e_A 50 RGDELEAHVERQAALAPHARVHLEREAFAASHGASLDDFAEIRKFAEAHGLTLDRAHVAAGTAVL 114 (552)
T ss_dssp THHHHHHHHHHHTTSCTTSCCCCCHHHHHHHHSCCHHHHHHHHHHHHHTTCEEEEEETTTTEEEE
T ss_pred CHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCceeEEecCCCEEEE
Confidence 566677777665 455 899999999999999999999999999999965443334445543
No 295
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=47.55 E-value=62 Score=23.59 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=40.6
Q ss_pred HHHHHHhhCCCCeeechhhhhhh--------hcccHHHHHHHHHHHHHcCCeeEeccc
Q 033931 47 TYDKLLSEAPKFKLITPSILSDR--------LRINGSLARRAIKDLMARGSIRMISAH 96 (108)
Q Consensus 47 t~dKl~KEVpk~k~ITps~vser--------lkI~~SlAr~~Lr~L~~kGlIk~V~k~ 96 (108)
+|+=+..--..-.|.|.|.|.+= +++.-.+-+++|+-|+.+|-..+...+
T Consensus 111 iy~wv~~~G~~~sV~TlyEL~~Gd~t~~~ef~gld~~vL~kaL~~L~~~gKaql~~~~ 168 (176)
T 3cuq_C 111 IYQWVSRSGQNNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEIITVS 168 (176)
T ss_dssp HHHHHHTTTCCSCEEEHHHHHHCTTTTTSTTTTCCHHHHHHHHHHHHHHTSEEECCTT
T ss_pred HHHHHHhcCCcCcEEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCeEEeecC
Confidence 45555555556689999999875 889999999999999999998887543
No 296
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=47.50 E-value=29 Score=26.61 Aligned_cols=46 Identities=15% Similarity=0.302 Sum_probs=34.4
Q ss_pred HHHHHHhh-CCCCeeechhhhhhhhcc-cH---HHHHHHHHHHHHcCCeeEe
Q 033931 47 TYDKLLSE-APKFKLITPSILSDRLRI-NG---SLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 47 t~dKl~KE-Vpk~k~ITps~vserlkI-~~---SlAr~~Lr~L~~kGlIk~V 93 (108)
++|-|... -|. .-+|+..||+++++ +. .+-+++||.|..-|++...
T Consensus 46 lfd~L~~~~gp~-~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 96 (368)
T 3reo_A 46 VLEIMAKSVPPS-GYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYT 96 (368)
T ss_dssp HHHHHHHHCCTT-CCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred chhHHhhcCCCC-CCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEe
Confidence 45655543 222 23799999999974 44 3889999999999999886
No 297
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.64 E-value=24 Score=27.87 Aligned_cols=48 Identities=4% Similarity=0.182 Sum_probs=39.8
Q ss_pred CCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEec
Q 033931 57 KFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTR 104 (108)
Q Consensus 57 k~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr 104 (108)
-|+-||-..+|+.|+++..-+..-|..|-..|.|.--.-.....|++.
T Consensus 344 ~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~ 391 (429)
T 4b4t_R 344 SYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETN 391 (429)
T ss_dssp TCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEEC
T ss_pred HhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEEC
Confidence 379999999999999999999999999999999987643344456653
No 298
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=46.23 E-value=4.2 Score=30.91 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=0.0
Q ss_pred hhCCCCeeechhhhhhhh-cccHHHHHHHHHHHHHcCCee
Q 033931 53 SEAPKFKLITPSILSDRL-RINGSLARRAIKDLMARGSIR 91 (108)
Q Consensus 53 KEVpk~k~ITps~vserl-kI~~SlAr~~Lr~L~~kGlIk 91 (108)
++.+...=|....|+++| ++..+--|.+|++|.+.|.|=
T Consensus 217 ~~~~~~~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IY 256 (270)
T 2pi2_A 217 KACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIY 256 (270)
T ss_dssp ----------------------------------------
T ss_pred HhCCCccCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEe
Confidence 344444667778999999 699999999999999999983
No 299
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=45.42 E-value=15 Score=21.91 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=23.2
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCee
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIR 91 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk 91 (108)
+||..++|+++.. ...+.-|+-+.+.|.|-
T Consensus 2 lltl~EwA~~~~~--~~s~~Tl~r~ar~G~I~ 31 (52)
T 2og0_A 2 YLTLQEWNARQRR--PRSLETVRRWVRESRIF 31 (52)
T ss_dssp EEEHHHHHHTSSS--CCCHHHHHHHHHTTCEE
T ss_pred eeeHHHHHHHhcC--CCCHHHHHHHHHCCCCC
Confidence 6899999999843 45555667778899993
No 300
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=44.53 E-value=27 Score=27.74 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=34.9
Q ss_pred hhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 64 SILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 64 s~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
..++.||..+.+.-++.|..|-+++.|.....++.+..|.
T Consensus 342 ~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~Yl 381 (382)
T 3dpl_C 342 EILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYM 381 (382)
T ss_dssp HHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEEC
T ss_pred HHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeEEEc
Confidence 4456789999999999999999999999988777777775
No 301
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=43.58 E-value=41 Score=18.59 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=25.5
Q ss_pred ccceeCHHHHHHHHhhCCCCeeechhhhhhhhcccHH-HHHHHHHHHHH
Q 033931 39 NMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGS-LARRAIKDLMA 86 (108)
Q Consensus 39 n~V~~dk~t~dKl~KEVpk~k~ITps~vserlkI~~S-lAr~~Lr~L~~ 86 (108)
-.|-+|++++++|. .+|++.+++.| +.|.+|+++.+
T Consensus 12 i~vrl~~el~~~l~------------~~a~~~g~s~s~~ir~ai~~~l~ 48 (55)
T 2k9i_A 12 LGVYIPQEWHDRLM------------EIAKEKNLTLSDVCRLAIKEYLD 48 (55)
T ss_dssp EEEEECHHHHHHHH------------HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred EEEEcCHHHHHHHH------------HHHHHhCCCHHHHHHHHHHHHHH
Confidence 45778999999987 46777777665 45666666543
No 302
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=42.98 E-value=21 Score=21.05 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=27.0
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecc-cc--eeEEEec
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSIRMISA-HA--SQQIYTR 104 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k-~~--~q~IYtr 104 (108)
++|+..+|+.|+|+-+- |+.+...|+ |... .+ +...|.+
T Consensus 2 ~lt~~e~a~~LgvS~~T----l~rw~~~G~--P~~~~~g~~~~~~y~~ 43 (68)
T 1j9i_A 2 EVNKKQLADIFGASIRT----IQNWQEQGM--PVLRGGGKGNEVLYDS 43 (68)
T ss_dssp EEEHHHHHHHTTCCHHH----HHHHTTTTC--CCSSCCCSSSCCEEEH
T ss_pred ccCHHHHHHHHCcCHHH----HHHHHHCCC--CeEeeCCCcceEEECH
Confidence 57999999999987665 566677898 5533 33 3555654
No 303
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=42.35 E-value=29 Score=25.00 Aligned_cols=33 Identities=18% Similarity=0.063 Sum_probs=28.2
Q ss_pred echhhhhhhh-----cccHHHHHHHHHHHHHcCCeeEe
Q 033931 61 ITPSILSDRL-----RINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 61 ITps~vserl-----kI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
+|++.|++.+ ++..+-+..+|+.|++.|+|...
T Consensus 296 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 296 NRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp CSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec
Confidence 5778888777 78888888999999999999875
No 304
>3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A*
Probab=41.11 E-value=61 Score=27.18 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=46.1
Q ss_pred CHHHHHHHHhhC-----CCC-eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 44 DQATYDKLLSEA-----PKF-KLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 44 dk~t~dKl~KEV-----pk~-k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
+.+.++.++-|| |+| +.+|+..|.++|.=.-.--..+..-|++.|+-..-...++..|-.
T Consensus 38 n~~~Le~~l~~VSdP~S~~YGk~LT~~ev~~~f~Ps~~~v~aV~~WL~~~Gi~~~~~~~~~~~I~~ 103 (544)
T 3edy_A 38 NVERLSELVQAVSDPSSPQYGKYLTLENVADLVRPSPLTLHTVQKWLLAAGAQKCHSVITQDFLTC 103 (544)
T ss_dssp CHHHHHHHHHHHHCTTSTTTTCCCCHHHHHHHHCCCHHHHHHHHHHHHHHTCEEEEECTTSCEEEE
T ss_pred CHHHHHHHHHhhcCCCCcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCCceeEecCCCEEEE
Confidence 567777777776 455 999999999999999999999999999999854222234455533
No 305
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=40.99 E-value=64 Score=24.03 Aligned_cols=51 Identities=22% Similarity=0.171 Sum_probs=40.0
Q ss_pred HHHHHHHhhCCCCeeechhhhhhh--------hcccHHHHHHHHHHHHHcCCeeEeccc
Q 033931 46 ATYDKLLSEAPKFKLITPSILSDR--------LRINGSLARRAIKDLMARGSIRMISAH 96 (108)
Q Consensus 46 ~t~dKl~KEVpk~k~ITps~vser--------lkI~~SlAr~~Lr~L~~kGlIk~V~k~ 96 (108)
.+|+=+..--.+-.|+|.|.|.+= +++--.+-+++|+-|+.+|-..+...+
T Consensus 134 ~I~~Wv~~tG~~~sV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~GKaqi~~~~ 192 (202)
T 1xb4_A 134 LILQWFEDSGKLNQVITLYELSEGDETVNWEFHRMPESLLYYCLKPLCDRNRATMLKDE 192 (202)
T ss_dssp HHHHHHHTTSCTTSCEEHHHHC--CCSCCSTTTTCCHHHHHHHHHHHHGGGCCEEEECT
T ss_pred HHHHHHHhcCCcCcEEEeehcccCCCCCCccccCCCHHHHHHHHHHHHHcCCEEEeecC
Confidence 355555555566789999999876 889999999999999999998887543
No 306
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=39.90 E-value=25 Score=20.16 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.3
Q ss_pred chhhhhhhhcccHHHHHHHHHHHHH
Q 033931 62 TPSILSDRLRINGSLARRAIKDLMA 86 (108)
Q Consensus 62 Tps~vserlkI~~SlAr~~Lr~L~~ 86 (108)
|...||+.++|+.+-.+..+..+..
T Consensus 28 s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 28 TTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999988887777554
No 307
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=38.98 E-value=34 Score=20.15 Aligned_cols=44 Identities=11% Similarity=0.173 Sum_probs=28.8
Q ss_pred CCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCe-eEecccceeEEEe
Q 033931 55 APKFKLITPSILSDRLRINGSLARRAIKDLMARGSI-RMISAHASQQIYT 103 (108)
Q Consensus 55 Vpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlI-k~V~k~~~q~IYt 103 (108)
.+...++|...|++.++|+-|- |..|...|.+ .+|.-+++. .|.
T Consensus 5 ~~~~~~l~~~eva~~lgvsrst----iy~~~~~g~fP~piklG~~~-~w~ 49 (66)
T 1z4h_A 5 LQPDSLVDLKFIMADTGFGKTF----IYDRIKSGDLPKAKVIHGRA-RWL 49 (66)
T ss_dssp CCSSSEECHHHHHHHHSSCHHH----HHHHHHHHHCCCSEESSSCE-EEE
T ss_pred cccccccCHHHHHHHHCcCHHH----HHHHHHCCCCCCCEEeCCCe-EEe
Confidence 3456899999999999986655 4555666755 345333433 354
No 308
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=38.68 E-value=45 Score=21.04 Aligned_cols=42 Identities=17% Similarity=0.110 Sum_probs=33.9
Q ss_pred eeechhhhhhhhcc-cHHHHHHHHHHHHHcCCeeEecccceeE
Q 033931 59 KLITPSILSDRLRI-NGSLARRAIKDLMARGSIRMISAHASQQ 100 (108)
Q Consensus 59 k~ITps~vserlkI-~~SlAr~~Lr~L~~kGlIk~V~k~~~q~ 100 (108)
..|+...+|++|++ .-==---++.=|+.=|+|...++++-++
T Consensus 29 ~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~k~~~~W 71 (76)
T 1cf7_A 29 GVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQW 71 (76)
T ss_dssp TEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEETTEEEE
T ss_pred CcCcHHHHHHHhCCccceehhhHHHHHhHhcceeecCCCcEEE
Confidence 58999999999999 6444445788899999999998877554
No 309
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=38.68 E-value=25 Score=24.72 Aligned_cols=44 Identities=30% Similarity=0.459 Sum_probs=32.7
Q ss_pred cceeCHHHHHHHHhhCC------CCeeechhhh--hhhhcccHHHHHHHHHH
Q 033931 40 MVLFDQATYDKLLSEAP------KFKLITPSIL--SDRLRINGSLARRAIKD 83 (108)
Q Consensus 40 ~V~~dk~t~dKl~KEVp------k~k~ITps~v--serlkI~~SlAr~~Lr~ 83 (108)
+..|-.++|++|..|-. +-+-||.-+| |-||=+-|.||+.++.|
T Consensus 60 mnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGELaKhAvse 111 (123)
T 2nqb_D 60 MNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcHHHHHHHHHH
Confidence 34466788999987743 4467887764 66888889999988765
No 310
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=37.52 E-value=28 Score=21.55 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=35.3
Q ss_pred eCHHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 43 FDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 43 ~dk~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
++.+...++...+-. =.|...||..|+|+-+..++.++...+.|.+.+
T Consensus 18 ~s~~~r~~i~~~~~~--g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~ 65 (128)
T 1pdn_C 18 LPNNIRLKIVEMAAD--GIRPCVISRQLRVSHGCVSKILNRYQETGSIRP 65 (128)
T ss_dssp CCHHHHHHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSC
T ss_pred CCHHHHHHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHHHHHhhCCccc
Confidence 445555555544321 248899999999999999999999998887643
No 311
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=37.13 E-value=27 Score=19.45 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=20.7
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHH
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMA 86 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~ 86 (108)
.|...||+.|+|+.+-.+.-++.+.+
T Consensus 14 ~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 14 YTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp CCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 37789999999999888877766554
No 312
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=35.92 E-value=7.3 Score=20.67 Aligned_cols=23 Identities=17% Similarity=-0.044 Sum_probs=19.0
Q ss_pred echhhhhhhhcccHHHHHHHHHH
Q 033931 61 ITPSILSDRLRINGSLARRAIKD 83 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~ 83 (108)
+|...||+.|+|.-+.-.+.|+.
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Confidence 68999999999988877766654
No 313
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Probab=35.03 E-value=34 Score=28.57 Aligned_cols=31 Identities=6% Similarity=-0.016 Sum_probs=28.0
Q ss_pred chhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 62 TPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 62 Tps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
+.-.||||.++....-..+++.|.+.|||+.
T Consensus 404 slldia~~~~~~~~~~~~~~~~l~~~~l~~~ 434 (435)
T 3k9t_A 404 SLLDIAYKSGMEFRRIKYAADALYRVELLKL 434 (435)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTCEEE
T ss_pred cHHHHHHHhCcCHHHHHHHHHHHHHccCccc
Confidence 4457899999999999999999999999984
No 314
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=34.97 E-value=79 Score=22.78 Aligned_cols=58 Identities=21% Similarity=0.343 Sum_probs=40.6
Q ss_pred chhhHHhhhccceeCHHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 30 KGKQKEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 30 Kgk~keK~nn~V~~dk~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
--+-++-+++..+=.++-+-.++.+- ++. +|.++|| |+|.+-|+++.-..+.+..+|.
T Consensus 22 ~~~I~~iI~~~~I~tQeEL~~~L~~~-Gi~-vTQATlS--------------RDikEL~lvKv~~~~G~~~~Y~ 79 (170)
T 3lap_A 22 QARIVAILSSAQVRSQNELAALLAAE-GIE-VTQATLS--------------RDLEELGAVKLRGADGGTGIYV 79 (170)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHT-TCC-CCHHHHH--------------HHHHHHTCEEECCTTCTTCEEE
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHc-CCC-cCchhHH--------------HHHHHcCcEEeecCCCCEEEEE
Confidence 34567777777777776666666555 676 6999998 8888889999665544332776
No 315
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=34.60 E-value=31 Score=23.30 Aligned_cols=46 Identities=15% Similarity=0.134 Sum_probs=36.7
Q ss_pred HHHHHHHHh-------hCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCee
Q 033931 45 QATYDKLLS-------EAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIR 91 (108)
Q Consensus 45 k~t~dKl~K-------EVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk 91 (108)
++.|-.+.. +-|. .++|...+...+.-.+.+..++.+-|+.-|||.
T Consensus 46 pe~Yl~iRN~iI~~yr~nP~-~yLT~t~~r~~l~gDv~~i~RVh~FLe~wGLIN 98 (104)
T 2fq3_A 46 PEVYMRYRNFMVNSYRLNPN-EYFSVTTARRNVSGDAAALFRLHKFLTKWGLIN 98 (104)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-SCCCHHHHHHHSCSCHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHHHhCCc-eeeeHHHHHHHccccHHHHHHHHHHHHHcCeec
Confidence 566665544 3343 688999998888778899999999999999995
No 316
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=34.43 E-value=63 Score=25.98 Aligned_cols=48 Identities=2% Similarity=0.133 Sum_probs=41.1
Q ss_pred CCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 56 PKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 56 pk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
.-|.-||-..+|+.|+++..-+...|-.|-..|.|.-..-+....|++
T Consensus 312 ~pYsrIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~ 359 (394)
T 3txn_A 312 EPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIV 359 (394)
T ss_dssp TTCSEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEE
T ss_pred HhhceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEE
Confidence 458899999999999999999999999999999998875555555555
No 317
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=33.56 E-value=40 Score=20.72 Aligned_cols=26 Identities=12% Similarity=0.014 Sum_probs=22.1
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHH
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMA 86 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~ 86 (108)
.|...||.+|+|+-+.-++.++....
T Consensus 39 ~s~~~iA~~~gIs~sTl~rW~k~~~~ 64 (87)
T 2elh_A 39 ESKASVARDIGVPESTLRGWCKNEDK 64 (87)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 58999999999999988888876654
No 318
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=32.98 E-value=34 Score=22.46 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=36.0
Q ss_pred eCHHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 43 FDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 43 ~dk~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
++.+.-.+|...+-. =.+...||+.|+|+-+..++.++...+.|.+.+
T Consensus 33 ~s~e~r~~iv~~~~~--G~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~ 80 (149)
T 1k78_A 33 LPDVVRQRIVELAHQ--GVRPCDISRQLRVSHGCVSKILGRYYETGSIKP 80 (149)
T ss_dssp CCHHHHHHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCC
T ss_pred CCHHHHHHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCc
Confidence 455555555544421 258899999999999999999999999897543
No 319
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=32.74 E-value=41 Score=18.16 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=21.7
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCC
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGS 89 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGl 89 (108)
+|.+.+|..+++... .+|..|.+.|+
T Consensus 3 ~rv~~lAkel~~~~k---~l~~~l~~~g~ 28 (49)
T 1nd9_A 3 VTIKTLAAERQTSVE---RLVQQFADAGI 28 (49)
T ss_dssp ECTTHHHHHHSSSHH---HHHHHHHHHTS
T ss_pred ccHHHHHHHHCcCHH---HHHHHHHHcCC
Confidence 677889999988755 68888889998
No 320
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=32.58 E-value=64 Score=20.83 Aligned_cols=30 Identities=13% Similarity=0.270 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 74 GSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 74 ~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
-++-+.+|+.|.+.|.+..+-+.....-|-
T Consensus 47 ~~~l~~aLk~~v~~G~l~q~Kg~GasGsfk 76 (90)
T 1hst_A 47 DLQIKLSIRRLLAAGVLKQTKGVGASGSFR 76 (90)
T ss_dssp HHHHHHHHHHHHHTTSEEEECCSSCCCEEE
T ss_pred HHHHHHHHHHHHHcCCeeeecCCCccceee
Confidence 567789999999999999997644444443
No 321
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=32.42 E-value=39 Score=19.04 Aligned_cols=24 Identities=4% Similarity=-0.112 Sum_probs=19.3
Q ss_pred echhhhhhhhcccHHHHHHHHHHH
Q 033931 61 ITPSILSDRLRINGSLARRAIKDL 84 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L 84 (108)
.|...||+.++|+.+-.+..+...
T Consensus 32 ~s~~eIA~~lgis~~tv~~~~~ra 55 (70)
T 2o8x_A 32 LSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 588999999999988877665543
No 322
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=32.03 E-value=11 Score=24.62 Aligned_cols=23 Identities=9% Similarity=0.289 Sum_probs=21.2
Q ss_pred echhhhhhhhcccHHHHHHHHHH
Q 033931 61 ITPSILSDRLRINGSLARRAIKD 83 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~ 83 (108)
+|...||+.++|+.+..++.|..
T Consensus 21 ~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 89999999999999999998875
No 323
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=31.94 E-value=29 Score=22.91 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHHHHcCCeeEecccc
Q 033931 73 NGSLARRAIKDLMARGSIRMISAHA 97 (108)
Q Consensus 73 ~~SlAr~~Lr~L~~kGlIk~V~k~~ 97 (108)
+-.=|..+-+.|.+.|+|..|+..|
T Consensus 69 ~r~eAv~lg~~Ll~~G~I~hv~~~~ 93 (105)
T 1fsh_A 69 ERREARKYASSMLKHGFLRHTVNKI 93 (105)
T ss_dssp SHHHHHHHHHHHHHTTTEECSSSSC
T ss_pred CHHHHHHHHHHHHHCCcEEEcCCCC
Confidence 4567889999999999999997655
No 324
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=31.90 E-value=39 Score=19.66 Aligned_cols=27 Identities=15% Similarity=0.098 Sum_probs=22.3
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHH
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMA 86 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~ 86 (108)
=.|...||+.|+|+.+-.+..+..+..
T Consensus 31 g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 31 GLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 358899999999999998887776654
No 325
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.33 E-value=68 Score=21.35 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=32.0
Q ss_pred hcccHHHHHHHHHHHHHcCCeeEecccceeEEEecc
Q 033931 70 LRINGSLARRAIKDLMARGSIRMISAHASQQIYTRA 105 (108)
Q Consensus 70 lkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr~ 105 (108)
|..+.++-++.|..|-+++.|.....+....+|..+
T Consensus 61 F~p~~~~IKk~IE~LIereYleR~~~d~~~y~YlA~ 96 (101)
T 2do7_A 61 FPVKPADLKKRIESLIDRDYMERDKENPNQYNYIAS 96 (101)
T ss_dssp SCCCHHHHHHHHHHHHHTTSEEECSSCTTEEEECCC
T ss_pred CCCCHHHHHHHHHHHhhhhHHhcCCCCCCeEEEecC
Confidence 788899999999999999999998877888889743
No 326
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=31.15 E-value=52 Score=20.23 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=23.3
Q ss_pred hhCCCC--eeechhhhhhhhcccHHHHHHHHH
Q 033931 53 SEAPKF--KLITPSILSDRLRINGSLARRAIK 82 (108)
Q Consensus 53 KEVpk~--k~ITps~vserlkI~~SlAr~~Lr 82 (108)
.+||=+ .++|+...|+-|+|.-+-.+++++
T Consensus 7 ~~~p~~~K~~LTi~EaAeylgIg~~~l~~L~~ 38 (70)
T 1y6u_A 7 TDIPIWERYTLTIEEASKYFRIGENKLRRLAE 38 (70)
T ss_dssp --CCTTTSSEEEHHHHHHHTCSCHHHHHHHHH
T ss_pred ccccccccceeCHHHHHHHHCcCHHHHHHHHH
Confidence 357765 799999999999999888776653
No 327
>1pm6_A Excisionase; antiparallel beta-sheet, winged-helix, CIS-trans-trans triproline, gene regulation; NMR {Enterobacteria phage HK022} SCOP: a.6.1.7
Probab=30.94 E-value=27 Score=22.07 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=22.4
Q ss_pred eechhhhhhhhcccHHHHHHHHHHHHHcCCe
Q 033931 60 LITPSILSDRLRINGSLARRAIKDLMARGSI 90 (108)
Q Consensus 60 ~ITps~vserlkI~~SlAr~~Lr~L~~kGlI 90 (108)
+||..++|+++.. .+.+.-|+-+...|.|
T Consensus 2 llTl~EwA~~~~~--~~s~~Tl~r~ar~G~I 30 (72)
T 1pm6_A 2 YLTLQEWNARQRR--PRSLETVRRWVRESRI 30 (72)
T ss_dssp EEEHHHHHHHSSS--CCCHHHHHHHHHHTCE
T ss_pred eeeHHHHHHHhcC--CCCHHHHHHHHHCCCC
Confidence 7899999999844 4445556777888999
No 328
>3vc8_A RNA-directed RNA polymerase; NEW fold, HOST membrane, multi-PASS membrane protein, cytopl hydrolase, viral protein; 2.00A {Murine hepatitis virus} PDB: 3vcb_A
Probab=30.86 E-value=34 Score=23.08 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=18.9
Q ss_pred HhhhccceeCHHHHHHHHhhCCC
Q 033931 35 EKVNNMVLFDQATYDKLLSEAPK 57 (108)
Q Consensus 35 eK~nn~V~~dk~t~dKl~KEVpk 57 (108)
+-.-..++||.+.|.+|..||+.
T Consensus 9 ~AA~~TFvId~~~Y~kL~nsis~ 31 (94)
T 3vc8_A 9 EMALTTFMITKESYCKLKNSVSD 31 (94)
T ss_dssp HHTTSCEEECHHHHHHHHHHSCH
T ss_pred HHhhceEEeccHHHHHHHhhcCH
Confidence 34556789999999999999864
No 329
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=30.78 E-value=74 Score=20.83 Aligned_cols=47 Identities=4% Similarity=0.014 Sum_probs=36.5
Q ss_pred HHHHHHHhhCCCC-eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 46 ATYDKLLSEAPKF-KLITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 46 ~t~dKl~KEVpk~-k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
++-++|++=.... +=+.+..||+.++|--.---++|.+|-.+|.|..
T Consensus 19 d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~S 66 (80)
T 2lnb_A 19 HLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL 66 (80)
T ss_dssp HHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccC
Confidence 3445555333222 5789999999999999999999999999999754
No 330
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=30.29 E-value=58 Score=24.61 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=28.3
Q ss_pred chhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 62 TPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 62 Tps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
+-..+.+.|+|+-+..|.+|.-|.++|.|...
T Consensus 25 ~Li~l~~~~Gi~e~avRtAlsRL~~~G~L~~~ 56 (247)
T 3kfw_X 25 ELIQLTADFGIKETTLRVALTRMVGAGDLVRS 56 (247)
T ss_dssp HHHHHHTTTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCeecc
Confidence 34567889999999999999999999999874
No 331
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=30.09 E-value=87 Score=22.54 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=34.6
Q ss_pred CHHHHHHHHhhCCCCeeechhhhhhhhcccHHHHHH-HHHHHHHcCCeeEe
Q 033931 44 DQATYDKLLSEAPKFKLITPSILSDRLRINGSLARR-AIKDLMARGSIRMI 93 (108)
Q Consensus 44 dk~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~-~Lr~L~~kGlIk~V 93 (108)
+...+..+.+..... .++.+.+|+.++|.-+-... +-+.|.+.|+|..-
T Consensus 249 e~~~i~~~~~~~~g~-~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~ 298 (324)
T 1hqc_A 249 DREILEVLILRFGGG-PVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRT 298 (324)
T ss_dssp HHHHHHHHHHHSCSS-CCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhcCC-CchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcC
Confidence 345666777665443 45889999999998665555 44458999999743
No 332
>3gzf_A Replicase polyprotein 1AB; FCOV, NSP4, viral protein; 2.76A {Feline coronavirus}
Probab=29.85 E-value=36 Score=23.04 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=19.0
Q ss_pred HhhhccceeCHHHHHHHHhhCC
Q 033931 35 EKVNNMVLFDQATYDKLLSEAP 56 (108)
Q Consensus 35 eK~nn~V~~dk~t~dKl~KEVp 56 (108)
+-.....+||.+.|.+|..||+
T Consensus 14 ~AA~~TFvId~~~Y~kL~n~is 35 (96)
T 3gzf_A 14 SAAMGTFVIDMRSYETLVNSTS 35 (96)
T ss_dssp HHHHSCEEECHHHHHHHHTTTT
T ss_pred HhhcceEEEccHHHHHHHhhcC
Confidence 4456778999999999999988
No 333
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=29.11 E-value=32 Score=22.47 Aligned_cols=34 Identities=21% Similarity=0.119 Sum_probs=28.4
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
-.+|...+|.||+|+-|.-..=.+++.+.|.--+
T Consensus 48 g~~s~~e~arry~Is~s~i~~W~r~~~~~G~~~L 81 (95)
T 2jrt_A 48 GLITEREALDRYSLSEEEFALWRSAVAAHGEKAL 81 (95)
T ss_dssp TSSCHHHHHHHTTCCHHHHHHHHHHTTTCCTTSC
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhHHHH
Confidence 3578999999999999999988888888776544
No 334
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=29.08 E-value=1e+02 Score=24.15 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=44.6
Q ss_pred HHHHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEeccc
Q 033931 46 ATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRAT 106 (108)
Q Consensus 46 ~t~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYtr~~ 106 (108)
.++..+..|..---+++...||.+++++..=-..++..|.+.|.-.--++-..+.|.|-++
T Consensus 307 ~ll~~~~~E~~~p~~y~~~~~~~~~~~~~p~~~~~~~~L~~~Gy~~s~tH~~p~~ikTdAp 367 (378)
T 2dul_A 307 KLLKMIDQELDIPLFYDTHAIGRRLKIETKKVEEIISALREQGYEATRTHFSPTGIKTSAP 367 (378)
T ss_dssp HHHHHHHHSCCSSCCEEHHHHHHHHTCCBCCHHHHHHHHHHTTCCEEEETTEEEEEEESSC
T ss_pred HHHHHHHHhcCCCcEEeHHHHHHHcCCCCCCHHHHHHHHHHCCCEEEeeecCCCcEecCCC
Confidence 3455555563221379999999999998877788999999999876556555667777553
No 335
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=27.40 E-value=1.5e+02 Score=21.12 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=35.1
Q ss_pred echhhhhhhhc--ccHHHHHHHHHHHHH------cCCeeEecccceeEEEecc
Q 033931 61 ITPSILSDRLR--INGSLARRAIKDLMA------RGSIRMISAHASQQIYTRA 105 (108)
Q Consensus 61 ITps~vserlk--I~~SlAr~~Lr~L~~------kGlIk~V~k~~~q~IYtr~ 105 (108)
+|...|++.++ +...-.+.+|.+|.+ +| |.++.-...-..+|+.
T Consensus 23 vs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg-~~l~~v~~gy~l~t~~ 74 (162)
T 1t6s_A 23 VNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRT-FRIHAIAGGYRFLTEP 74 (162)
T ss_dssp BCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCS-EEEEEETTEEEEEECG
T ss_pred CCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCC-EEEEEECCEEEEEEcH
Confidence 89999999999 888889999999964 34 5666556777788875
No 336
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=26.57 E-value=61 Score=24.85 Aligned_cols=32 Identities=13% Similarity=-0.030 Sum_probs=29.9
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCCeeE
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
.|+..||+++++....++..|+.|.+-|++..
T Consensus 56 ~t~~eLa~~~g~~~~~v~~~L~~l~~~gll~~ 87 (373)
T 2qm3_A 56 DDIWRIVDLSEEPLPLVVAILESLNELGYVTF 87 (373)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEC
T ss_pred CCHHHHHHHhCCChHHHHHHHHHHhhCCcEEE
Confidence 58899999999999999999999999999965
No 337
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=26.37 E-value=67 Score=24.73 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=36.8
Q ss_pred HHHhhCCC-CeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecc
Q 033931 50 KLLSEAPK-FKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISA 95 (108)
Q Consensus 50 Kl~KEVpk-~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k 95 (108)
|..-+-.+ +...|+..+++-++++-+.-+.++.+++..|++-.-..
T Consensus 32 ~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (403)
T 3ez9_A 32 RKEFNQTEYYQTFTRNAVAKLPKLSRRIVDQAIKEMEEDGYQFNKKQ 78 (403)
T ss_dssp HHHHTTTCCCCCBCHHHHHHSTTCCHHHHHHHHHHHHHTSCCCCEEE
T ss_pred ccCcCccccCCCcCHHHHHHHhCCCHHHHHHHHHHHhhcCCCCCcCC
Confidence 33334444 49999999999999999999999999999998865433
No 338
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=26.34 E-value=53 Score=19.87 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=21.7
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHH
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMA 86 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~ 86 (108)
.|...||+.|+|+.+-.+.-++.+..
T Consensus 37 ~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 37 LPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 58899999999999988887776554
No 339
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=26.25 E-value=1.3e+02 Score=19.51 Aligned_cols=38 Identities=11% Similarity=0.253 Sum_probs=28.2
Q ss_pred hhhhhh-cccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 65 ILSDRL-RINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 65 ~vserl-kI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
.++.-| ...---+++++.+|..+|.+..-|-++.+ .|.
T Consensus 26 D~~k~~P~~k~r~vKK~~~~LV~Eg~leywSSGSTT-myg 64 (78)
T 1ucr_A 26 DFTDLFPDMKQREVKKILTALVNDEVLEYWSSGSTT-MYG 64 (78)
T ss_dssp HHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEETTEE-EEE
T ss_pred HHHHHccccCHHHHHHHHHHHHhcCceEEEecCCeE-EEe
Confidence 344444 55667889999999999999999866544 454
No 340
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=25.97 E-value=81 Score=16.67 Aligned_cols=35 Identities=9% Similarity=0.252 Sum_probs=24.3
Q ss_pred cceeCHHHHHHHHhhCCCCeeechhhhhhhhcccHH-HHHHHHHHHHH
Q 033931 40 MVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGS-LARRAIKDLMA 86 (108)
Q Consensus 40 ~V~~dk~t~dKl~KEVpk~k~ITps~vserlkI~~S-lAr~~Lr~L~~ 86 (108)
.|-+|++++++|- .+|++.+++-| +.|.+|++..+
T Consensus 6 tv~l~~~l~~~Ld------------~~a~~~g~srS~~ir~ai~~~l~ 41 (45)
T 2cpg_A 6 TITLSESVLENLE------------KMAREMGLSKSAMISVALENYKK 41 (45)
T ss_dssp EEEEEHHHHHHHH------------HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred EEecCHHHHHHHH------------HHHHHHCcCHHHHHHHHHHHHHH
Confidence 5778899988886 46677776544 56667776554
No 341
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=25.56 E-value=55 Score=23.78 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=24.0
Q ss_pred hhhhhhhcccH---HHHHHHHHHHHHcCCeeEec
Q 033931 64 SILSDRLRING---SLARRAIKDLMARGSIRMIS 94 (108)
Q Consensus 64 s~vserlkI~~---SlAr~~Lr~L~~kGlIk~V~ 94 (108)
..+++.+++.- +-...+|+.|+..|+|....
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 316 LNICKKLGVEAVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 55677776543 77888999999999998753
No 342
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=25.16 E-value=47 Score=19.87 Aligned_cols=19 Identities=5% Similarity=0.165 Sum_probs=11.8
Q ss_pred cccHHHHHHHHHHHHHcCC
Q 033931 71 RINGSLARRAIKDLMARGS 89 (108)
Q Consensus 71 kI~~SlAr~~Lr~L~~kGl 89 (108)
.|+-..+.++++-+++-|.
T Consensus 29 ~vs~et~~rI~~aa~~lgY 47 (65)
T 1uxc_A 29 RVSDKTVEKVMAVVREHNY 47 (65)
T ss_dssp TCTTHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhCC
Confidence 4566666666666665554
No 343
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=24.91 E-value=1.4e+02 Score=19.08 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=38.2
Q ss_pred HHHHHHhhCCCCeeechhhhhh--------hhcccHHHHHHHHHHHHHcCCeeEecc
Q 033931 47 TYDKLLSEAPKFKLITPSILSD--------RLRINGSLARRAIKDLMARGSIRMISA 95 (108)
Q Consensus 47 t~dKl~KEVpk~k~ITps~vse--------rlkI~~SlAr~~Lr~L~~kGlIk~V~k 95 (108)
+|+=+..--..-.+.|.|.|.+ =+++.-++=+++|+-|+.+|--.+...
T Consensus 14 Iy~Wv~~~G~~~sV~TlyEL~~Gd~t~~~ef~gmd~~~L~kaL~~L~k~gkA~i~~~ 70 (79)
T 3htu_A 14 IYQWVSRSGQNNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEIITV 70 (79)
T ss_dssp HHHHHHTTCCSCSEECHHHHHHSSTTTTSTTTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHcCCCCceEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 3444555555668999999986 368999999999999999998777743
No 344
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=24.89 E-value=72 Score=18.25 Aligned_cols=28 Identities=7% Similarity=0.033 Sum_probs=22.0
Q ss_pred eeechhhhhhhhcccHHHHHHHHHHHHH
Q 033931 59 KLITPSILSDRLRINGSLARRAIKDLMA 86 (108)
Q Consensus 59 k~ITps~vserlkI~~SlAr~~Lr~L~~ 86 (108)
.=.|...||+.++|+.+-.+..+.....
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3468899999999999988877765543
No 345
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=24.86 E-value=47 Score=24.28 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=32.4
Q ss_pred HHHHHHHhhCCC--CeeechhhhhhhhcccHHHHHHHHHHH
Q 033931 46 ATYDKLLSEAPK--FKLITPSILSDRLRINGSLARRAIKDL 84 (108)
Q Consensus 46 ~t~dKl~KEVpk--~k~ITps~vserlkI~~SlAr~~Lr~L 84 (108)
+.|=+++++... ...|+-..||++++|+.|.-|+=|..+
T Consensus 12 ~~y~r~l~~l~~~g~~~iss~~l~~~~~~~~~~iRkdls~~ 52 (211)
T 2dt5_A 12 ITYLRILEELEAQGVHRTSSEQLGGLAQVTAFQVRKDLSYF 52 (211)
T ss_dssp HHHHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCcEECHHHHHHHhCCCHHHeechHHHH
Confidence 346667777655 489999999999999999999888877
No 346
>4asn_A TUBR; transcription, tubulin, FTSZ, segregation, partition; 3.50A {Bacillus megaterium}
Probab=24.81 E-value=1.1e+02 Score=20.43 Aligned_cols=47 Identities=23% Similarity=0.337 Sum_probs=40.1
Q ss_pred CCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 57 KFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 57 k~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
.++-|.-+.|+|.+--.-.--|+-|..|+.--.|..|...+...+|.
T Consensus 31 ~~KAI~K~~I~D~iE~~TA~~RKsL~rLEAi~FI~~V~G~r~HK~~L 77 (101)
T 4asn_A 31 VFKAIKKSSIADELEYSTANFRKTLNKLEAIHFIGTVTGGKEHKLYL 77 (101)
T ss_dssp GGGCEEHHHHHTTSCCCSHHHHHHHHHHHHTTCEEEECSSSSCEEEE
T ss_pred eeeeecHhhHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCccceeeh
Confidence 36889999999977766666799999999999999998887777775
No 347
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=24.80 E-value=49 Score=19.58 Aligned_cols=41 Identities=5% Similarity=-0.019 Sum_probs=29.0
Q ss_pred HhhhccceeCHHHHHHHHhh-CCCCeeechhhhhhhhcccHH
Q 033931 35 EKVNNMVLFDQATYDKLLSE-APKFKLITPSILSDRLRINGS 75 (108)
Q Consensus 35 eK~nn~V~~dk~t~dKl~KE-Vpk~k~ITps~vserlkI~~S 75 (108)
+.+...+=++..++.+++.. .....+-+...||+-|+|...
T Consensus 27 ~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~~l~v~~~ 68 (78)
T 3qq6_A 27 SELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVH 68 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHH
Confidence 44555556788888888877 556666777778888877653
No 348
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=24.54 E-value=82 Score=27.19 Aligned_cols=58 Identities=14% Similarity=0.258 Sum_probs=43.0
Q ss_pred HHHHHHHhhCCCC---eee--chhhhhhhhcccHHHHHHHHHHHHHcCCeeEecccceeEEEe
Q 033931 46 ATYDKLLSEAPKF---KLI--TPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYT 103 (108)
Q Consensus 46 ~t~dKl~KEVpk~---k~I--Tps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~~~q~IYt 103 (108)
+..=||+|--..+ .|| +...+..||..+.+.-++.|+.|.+++.|.....++...+|.
T Consensus 697 AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~Yl 759 (760)
T 1ldj_A 697 AAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYL 759 (760)
T ss_dssp HHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEEEC
T ss_pred eeehhhhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCCCCCcceeeC
Confidence 3444777765432 222 233455689999999999999999999999988777788885
No 349
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=24.27 E-value=1.5e+02 Score=19.02 Aligned_cols=51 Identities=14% Similarity=0.249 Sum_probs=39.2
Q ss_pred eeCHHHHHHHH-----------hhCCCCeeechhhhhhhh--cccHHHHHHHHHHHHHcCCeeE
Q 033931 42 LFDQATYDKLL-----------SEAPKFKLITPSILSDRL--RINGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 42 ~~dk~t~dKl~-----------KEVpk~k~ITps~vserl--kI~~SlAr~~Lr~L~~kGlIk~ 92 (108)
+|+.+.++.+. .+.|--.=+....|-.++ .+.-.+...+|.+|+++|.|..
T Consensus 58 ~~~~~~~~~l~~~l~~~L~~yH~~~P~~~G~~keeLr~~~~~~~~~~~~~~ll~~l~~~g~l~~ 121 (135)
T 2v9v_A 58 AISTERYQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQL 121 (135)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred EecHHHHHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCEEe
Confidence 45666555544 455666778888888886 4788899999999999999976
No 350
>1gng_X Frattide, glycogen synthase kinase-3 beta; transferase, protein kinase, GSK3/frattide complex, phosphorylated, active; HET: PTR; 2.6A {Homo sapiens}
Probab=24.05 E-value=32 Score=19.75 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=20.9
Q ss_pred chhhhhhhhcccHHHHHHHHHHHHHcCC
Q 033931 62 TPSILSDRLRINGSLARRAIKDLMARGS 89 (108)
Q Consensus 62 Tps~vserlkI~~SlAr~~Lr~L~~kGl 89 (108)
.|+.+-+.|=..|+|-+-|.|.|.++|+
T Consensus 11 dP~~lLQ~Llr~G~LIkEAVrRlq~~~l 38 (39)
T 1gng_X 11 DPHRLLQQLVLSGNLIKEAVRRLHSRRL 38 (39)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHhCcHHHHHHHHHHHccC
Confidence 4777777888889999999999988876
No 351
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=23.99 E-value=65 Score=24.47 Aligned_cols=34 Identities=29% Similarity=0.354 Sum_probs=24.0
Q ss_pred HhhCC-CCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEe
Q 033931 52 LSEAP-KFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 52 ~KEVp-k~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
++|+| +.++-.|..-+. .+| +|+-|++.|||++=
T Consensus 96 l~dL~~Ga~IAIpnd~sn-------~~R-aL~lL~~~GLI~Lk 130 (246)
T 4ef1_A 96 LQEIPDGSTIYVSSSVSD-------WPR-VLTILEDAGLITLK 130 (246)
T ss_dssp GGGSCTTCEEEEESCGGG-------HHH-HHHHHHHTTSEEEC
T ss_pred HHHcCCCCEEEeecCCch-------HHH-HHHHHHHCCCeeec
Confidence 35777 677777765443 244 78899999999874
No 352
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=23.53 E-value=1.2e+02 Score=24.54 Aligned_cols=48 Identities=13% Similarity=0.071 Sum_probs=40.3
Q ss_pred HHHHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHcCCeeEeccc
Q 033931 48 YDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAH 96 (108)
Q Consensus 48 ~dKl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~ 96 (108)
..+|+.-+. ..-++.-.|+++.++..+-.-.+|=+||=+|+|..+..+
T Consensus 330 ~~~vl~~l~-~~~~~~D~l~~~~gl~~~~v~~~L~~LEl~G~v~~~~Gg 377 (382)
T 3maj_A 330 RTRILALLG-PSPVGIDDLIRLSGISPAVVRTILLELELAGRLERHGGS 377 (382)
T ss_dssp HHHHHHHCC-SSCEEHHHHHHHHCCCHHHHHHHHHHHHHTTCCEECTTS
T ss_pred HHHHHHhhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEeCCCc
Confidence 456665554 456899999999999999999999999999999887654
No 353
>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q* 1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N 1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N* 1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ...
Probab=23.50 E-value=17 Score=22.36 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=20.6
Q ss_pred hhhhhcccHHHHHHHHHHHHHcCCeeEeccc
Q 033931 66 LSDRLRINGSLARRAIKDLMARGSIRMISAH 96 (108)
Q Consensus 66 vserlkI~~SlAr~~Lr~L~~kGlIk~V~k~ 96 (108)
+-.+|+ |.|..+|||...|+|-=|.+.
T Consensus 33 ~iRkfg----lcR~~FRe~A~~g~lpGv~Ka 59 (61)
T 2vqe_N 33 VYRFFG----LCRICLRELAHKGQLPGVRKA 59 (61)
T ss_dssp CCTTTS----SCHHHHHHHHHHTCSSSCEEC
T ss_pred eeccCc----eeHHHHHHHHhCCccCCeEee
Confidence 344555 789999999999998666543
No 354
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=23.39 E-value=64 Score=20.08 Aligned_cols=29 Identities=7% Similarity=0.013 Sum_probs=25.6
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHHcCC
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMARGS 89 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~kGl 89 (108)
.|...||..|+|+-+.-++-++.....|.
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~~~~~~ 59 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQHERDTG 59 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHTTSC
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHHHhccc
Confidence 58899999999999999999998887664
No 355
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=22.71 E-value=40 Score=21.45 Aligned_cols=52 Identities=10% Similarity=-0.095 Sum_probs=37.6
Q ss_pred ccceeCHHHHHHHHhhCC-CCeeechhhhhhhhcccHHHHHHHHHHHHHcCCe
Q 033931 39 NMVLFDQATYDKLLSEAP-KFKLITPSILSDRLRINGSLARRAIKDLMARGSI 90 (108)
Q Consensus 39 n~V~~dk~t~dKl~KEVp-k~k~ITps~vserlkI~~SlAr~~Lr~L~~kGlI 90 (108)
...-+|.+++.+.....| +..-.+.+.|..=-+|.-.+|++++++....|-+
T Consensus 14 ~~l~~~pe~~~~~~~~~~i~iN~a~~~~L~~ipGIG~~~A~~Il~~r~~~g~f 66 (98)
T 2edu_A 14 WELQISPELLAHGRQKILDLLNEGSARDLRSLQRIGPKKAQLIVGWRELHGPF 66 (98)
T ss_dssp STTTSCHHHHHHHHHHHHHHHHHSCHHHHHHSTTCCHHHHHHHHHHHHHHCCC
T ss_pred ceeccCHHHHHHHHhccCeehhhCCHHHHHHCCCCCHHHHHHHHHHHHhcCCc
Confidence 345568888888765544 2233367777777789999999999998777765
No 356
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=22.57 E-value=39 Score=23.46 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=36.9
Q ss_pred hccceeCHHHHHHHHhhCCCCeeechhhhhhhhcccH--------HHHHHHHHHHH---HcCCeeEe
Q 033931 38 NNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRING--------SLARRAIKDLM---ARGSIRMI 93 (108)
Q Consensus 38 nn~V~~dk~t~dKl~KEVpk~k~ITps~vserlkI~~--------SlAr~~Lr~L~---~kGlIk~V 93 (108)
+-.|++|-...+-+..-+-.-.+|.|..|-+.|.--. .-+|.+|+.|. +.+-+..+
T Consensus 11 DTSviIdGri~~~~~~gf~eg~liIP~~Vl~ELq~lA~s~d~~~r~rGr~gL~iL~~L~~~~~vei~ 77 (134)
T 3ix7_A 11 DTSVLVDGRVAEVAAVGFLEGPLWVPHFVLKELQHFADSQDPLRRAKGRRGLETLERLREAAPLEVL 77 (134)
T ss_dssp CHHHHHHCHHHHHHTTTCCCSCEEEEHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred ccceEEecHHHHHHHhccccCceecHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhcCCEEEe
Confidence 4467777778877777666668999988887775433 44666666554 44444444
No 357
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=21.67 E-value=68 Score=19.55 Aligned_cols=26 Identities=4% Similarity=0.161 Sum_probs=21.4
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHH
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMA 86 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~ 86 (108)
.|...||+.|+|+.+-.+.-+..+..
T Consensus 45 ~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 45 YSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp CCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 57889999999999988877766554
No 358
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=21.65 E-value=2.4e+02 Score=23.16 Aligned_cols=66 Identities=9% Similarity=0.167 Sum_probs=36.6
Q ss_pred hccceeCHHHHH----HHHhhCCCCeeechh--hhhhhhcccHHHH---HHHHHHHHHc-CCeeEecccceeEEEec
Q 033931 38 NNMVLFDQATYD----KLLSEAPKFKLITPS--ILSDRLRINGSLA---RRAIKDLMAR-GSIRMISAHASQQIYTR 104 (108)
Q Consensus 38 nn~V~~dk~t~d----Kl~KEVpk~k~ITps--~vserlkI~~SlA---r~~Lr~L~~k-GlIk~V~k~~~q~IYtr 104 (108)
+-.|++|.+-+. .++++.+..-+|||- +++.=+++...-- ..+.++|.++ |.+ .|.+.....||++
T Consensus 348 ~~pvVlDadgl~~l~~~ll~~~~~~~vlTPN~~E~~~L~g~~~~~~~~d~~aa~~la~~~~~~-VvlKG~~~vi~~~ 423 (502)
T 3rss_A 348 EKPAVIDADAINVLDTSVLKERKSPAVLTPHPGEMARLVKKTVGDVKYNYELAEEFAKENDCV-LVLKSATTIVTDG 423 (502)
T ss_dssp CSCEEECHHHHHTCCHHHHHHCSSCEEECCCHHHHHHHHTCCHHHHTTCHHHHHHHHHHHTSE-EEECSSSEEEECS
T ss_pred CCCEEEeCcccchhcHHHHhccCCCEEEeCCHHHHHHHhCCCccchHHHHHHHHHHHHHcCCE-EEEeCCCeEEEcC
Confidence 447899998775 456677778899995 3444444432100 1233344333 444 4455555556543
No 359
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=21.64 E-value=35 Score=22.77 Aligned_cols=43 Identities=16% Similarity=0.095 Sum_probs=31.1
Q ss_pred HHHHHhhCCCCeeechhhhhhhh----------cccHHHHHHHHHHHHHcCCeeEe
Q 033931 48 YDKLLSEAPKFKLITPSILSDRL----------RINGSLARRAIKDLMARGSIRMI 93 (108)
Q Consensus 48 ~dKl~KEVpk~k~ITps~vserl----------kI~~SlAr~~Lr~L~~kGlIk~V 93 (108)
+..++.|-|. .|+..|+++| .++.+.-++.|+.+...|+=-+|
T Consensus 92 I~~~~~~~~~---~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~~~~~ 144 (159)
T 2k27_A 92 IGDYKRQNPT---MFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPM 144 (159)
T ss_dssp HHHHHHHCSS---SCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCSCCCC
T ss_pred HHHHHHHCcc---chHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCccCcc
Confidence 3344444454 5788888888 37778889999999888876665
No 360
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=21.61 E-value=58 Score=22.92 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=35.3
Q ss_pred hhhHHhhhccceeCHHHHHHHHhhCCCCeeechhhhhhhhcccHH
Q 033931 31 GKQKEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGS 75 (108)
Q Consensus 31 gk~keK~nn~V~~dk~t~dKl~KEVpk~k~ITps~vserlkI~~S 75 (108)
|-..+.+...+ ++..++.++..--..-.+-|...||+.|+|..+
T Consensus 18 ~~tq~~la~~~-~s~~~~s~~e~g~~~~~~~~l~~i~~~l~~~~~ 61 (293)
T 3u3w_A 18 GLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPII 61 (293)
T ss_dssp TCCHHHHHTTT-SCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTH
T ss_pred CCCHHHHHHHh-CCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHH
Confidence 33456777778 999999999988766777788889999998864
No 361
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=21.24 E-value=76 Score=19.30 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=17.3
Q ss_pred echhhhhhhhcccHHHHHHHHH
Q 033931 61 ITPSILSDRLRINGSLARRAIK 82 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr 82 (108)
.|...||+.|+|+.+-.+..|.
T Consensus 54 ~s~~eIA~~lgis~~tV~~~l~ 75 (92)
T 3hug_A 54 WSTAQIATDLGIAEGTVKSRLH 75 (92)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHH
Confidence 4889999999999887665443
No 362
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=21.07 E-value=2.1e+02 Score=21.46 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=35.6
Q ss_pred echhhhhhhhcccHHHHHHHHHHHHH------cCCeeEecccceeEEEecc
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLMA------RGSIRMISAHASQQIYTRA 105 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~~------kGlIk~V~k~~~q~IYtr~ 105 (108)
||...|++.+++...-.+.+|.+|.+ +| |.++.-..+-..+|+.
T Consensus 31 vs~~~La~~l~~~~~~v~~~l~~L~~~y~~~~rG-iel~~v~~gy~l~T~~ 80 (219)
T 2z99_A 31 VTADALAAATEQPVYRVAAKLQLMADELTGRDSG-IDLRHTSEGWRMYTRA 80 (219)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCS-EEEEEETTEEEEEECG
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHhhCCCC-EEEEEECCEEEEEEcH
Confidence 89999999999999999999999964 34 5566556777788874
No 363
>4afj_X Proto-oncogene FRAT1; transferase-peptide complex, kinase; HET: PTR SJJ; 1.98A {Homo sapiens} PDB: 3zrk_X* 3zrl_X* 3zrm_X*
Probab=20.86 E-value=19 Score=19.65 Aligned_cols=27 Identities=30% Similarity=0.520 Sum_probs=18.2
Q ss_pred hhhhhhhhcccHHHHHHHHHHHHHcCC
Q 033931 63 PSILSDRLRINGSLARRAIKDLMARGS 89 (108)
Q Consensus 63 ps~vserlkI~~SlAr~~Lr~L~~kGl 89 (108)
|+.+-+.|=..|+|.+.|.+.|.++||
T Consensus 3 ph~lLQqLl~~G~likeAvrrl~sr~l 29 (30)
T 4afj_X 3 PHRLLQQLVLSGNLIKEAVRRLHSRRL 29 (30)
T ss_dssp -CHHHHHHHHHTCHHHHHHHHTCC---
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhcc
Confidence 566667777788888888888877765
No 364
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=20.73 E-value=1.5e+02 Score=20.06 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=27.8
Q ss_pred HHHhhCCCCeeechhhhhhhhcccHHHHHHHHHHHHHc
Q 033931 50 KLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMAR 87 (108)
Q Consensus 50 Kl~KEVpk~k~ITps~vserlkI~~SlAr~~Lr~L~~k 87 (108)
.|..|.-.. +...||.+|+++..-.++|++.....
T Consensus 85 ~I~~~f~G~---n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 85 RIWNDFNGR---NVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp HHHHHCCSS---CHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHhCCC---CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 445555443 78999999999999999999987764
No 365
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.72 E-value=64 Score=21.83 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=35.6
Q ss_pred HHHHHHHHhh-------CCCCeeechhhhhhhhc--ccHHHHHHHHHHHHHcCCeeE
Q 033931 45 QATYDKLLSE-------APKFKLITPSILSDRLR--INGSLARRAIKDLMARGSIRM 92 (108)
Q Consensus 45 k~t~dKl~KE-------Vpk~k~ITps~vserlk--I~~SlAr~~Lr~L~~kGlIk~ 92 (108)
++.|-.+..- -| ..++|...+-..+. -.+.+..++..-|+.-|||.-
T Consensus 47 pe~Yl~iRN~iI~~yr~np-~~yLT~t~~rr~L~~~gDv~~i~RVh~FLe~wGLIN~ 102 (111)
T 2dce_A 47 PERYLKIRNYILDQWEICK-PKYLNKTSVRPGLKNCGDVNCIGRIHTYLELIGAINF 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TSCCCGGGTTTTTSSSSCHHHHHHHHHHHHHHSSSSC
T ss_pred HHHHHHHHHHHHHHHHhCC-cceeeHHHHHHhcccccCHHHHHHHHHHHHHcCeeec
Confidence 4566555433 34 36889988887773 688999999999999999964
No 366
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=20.26 E-value=55 Score=17.82 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=18.4
Q ss_pred echhhhhhhhcccHHHHHHHHH
Q 033931 61 ITPSILSDRLRINGSLARRAIK 82 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr 82 (108)
.|...||+.|+|+-+-.++.|+
T Consensus 32 ~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 32 YTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHH
Confidence 3899999999999888777654
No 367
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=20.11 E-value=1.9e+02 Score=19.86 Aligned_cols=27 Identities=19% Similarity=0.397 Sum_probs=22.3
Q ss_pred hhcccHHHHHHHHHHHHHcCCeeEecc
Q 033931 69 RLRINGSLARRAIKDLMARGSIRMISA 95 (108)
Q Consensus 69 rlkI~~SlAr~~Lr~L~~kGlIk~V~k 95 (108)
-+.|+-+---.+|..|+++|+|.....
T Consensus 49 ~~~is~gtlYp~L~rLe~~Gll~~~~~ 75 (122)
T 1bm9_A 49 GFKPNHTEVYRSLHELLDDGILKQIKV 75 (122)
T ss_dssp TCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cccCCcccHHHHHHHHHHCCCeEEEEe
Confidence 355777778899999999999988754
No 368
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=20.01 E-value=82 Score=19.52 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=19.6
Q ss_pred echhhhhhhhcccHHHHHHHHHHHH
Q 033931 61 ITPSILSDRLRINGSLARRAIKDLM 85 (108)
Q Consensus 61 ITps~vserlkI~~SlAr~~Lr~L~ 85 (108)
.|...||+.|+|+.+-.+.-+..+.
T Consensus 43 ~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 43 LTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5789999999999988776655443
Done!