BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033935
         (108 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b
          Length = 346

 Score = 38.1 bits (87), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCA-MXXXXXXXXXAGDFTSNLKL 85
           W+  LL +E      + +WDT  S+P+G     L VC A +           DF   L L
Sbjct: 250 WMNNLLMRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLIKWRKEILDEEDFQGLLML 309

Query: 86  LQNYPPI 92
           LQN P I
Sbjct: 310 LQNLPTI 316


>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a
 pdb|2QFZ|B Chain B, Crystal Structure Of Human Tbc1 Domain Family Member 22a
          Length = 345

 Score = 36.6 bits (83), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCA-MXXXXXXXXXAGDFTSNLKL 85
           W+  LL +E      + +WDT  S+PDG     L VC A +           DF   L  
Sbjct: 249 WMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLF 308

Query: 86  LQNYP 90
           LQN P
Sbjct: 309 LQNLP 313


>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
           Gtpase Bound To Gdp And Alf3
          Length = 410

 Score = 28.5 bits (62), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSD 51
           W+  LL +EF     + +WDT LS+
Sbjct: 256 WMNCLLMREFQMGTVIRMWDTYLSE 280


>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p
          Length = 396

 Score = 26.2 bits (56), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSD 51
           W   LL +EF     +  WDT LS+
Sbjct: 236 WXNCLLXREFQXGTVIRXWDTYLSE 260


>pdb|3B8B|A Chain A, Crystal Structure Of Cysq From Bacteroides
           Thetaiotaomicron, A Bacterial Member Of The Inositol
           Monophosphatase Family
          Length = 292

 Score = 25.8 bits (55), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 16/50 (32%)

Query: 45  WDTL-LSDP-DGPQETLLRVCCAMXXXXXXXXXAGDFTSNLKLLQNYPPI 92
           WDTL + DP DG +E + R               G+FT N+ L+QN  P+
Sbjct: 98  WDTLWIVDPLDGTKEFIKR--------------NGEFTVNIALVQNAVPV 133


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.139    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,501,653
Number of Sequences: 62578
Number of extensions: 69753
Number of successful extensions: 95
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 5
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)