BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033935
(108 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NVG8|TBC13_HUMAN TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3
Length = 400
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/79 (50%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Query: 27 WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLL 86
W+TLLL+QEF + + IWD+L +D D + LL VCCAML+LIR +LL GDFT N++LL
Sbjct: 320 WLTLLLSQEFLLPDVIRIWDSLFAD-DNRFDFLLLVCCAMLMLIREQLLEGDFTVNMRLL 378
Query: 87 QNYPPISIRHLLCVANKLR 105
Q+YP + +L A +L+
Sbjct: 379 QDYPITDVCQILQKAKELQ 397
>sp|Q8R3D1|TBC13_MOUSE TBC1 domain family member 13 OS=Mus musculus GN=Tbc1d13 PE=2 SV=1
Length = 400
Score = 80.1 bits (196), Expect = 4e-15, Method: Composition-based stats.
Identities = 40/79 (50%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Query: 27 WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLL 86
W+TLLL+QEF + + IWD+L +D + + LL VCCAMLILIR +LL GDFT N++LL
Sbjct: 320 WLTLLLSQEFLLPDVIRIWDSLFADGN-RFDFLLLVCCAMLILIREQLLEGDFTVNMRLL 378
Query: 87 QNYPPISIRHLLCVANKLR 105
Q+YP + +L A +L+
Sbjct: 379 QDYPITDVCQILQKAKELQ 397
>sp|Q9URY3|YLOH_SCHPO TBC domain-containing protein C1952.17c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC1952.17c PE=4
SV=4
Length = 619
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 13/94 (13%)
Query: 27 WITLLLTQEFNFANNLHIWDTLLSDP-------------DGPQETLLRVCCAMLILIRRR 73
W T LL+QEF + + +WD++++D +G + L+ CC++LI +R
Sbjct: 362 WFTCLLSQEFPLPDVIRLWDSIIADQMKARLFGKNDDGFNGAYDFLMDFCCSILIELRES 421
Query: 74 LLAGDFTSNLKLLQNYPPISIRHLLCVANKLRTL 107
+L +F ++KLLQ + + + LL + +L+ L
Sbjct: 422 ILERNFADSIKLLQAHFNVDMPKLLNLTFELQHL 455
>sp|Q54TA5|TBC5B_DICDI TBC1 domain family member 5 homolog B OS=Dictyostelium discoideum
GN=tbc1d5B PE=3 SV=1
Length = 1016
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 24 MIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRV---CCAMLILIRRRLLAGDFT 80
++ WI LL +EF+F + L+IWD L + E L+ + C +ML IR LL D
Sbjct: 608 LLRWIRLLFGREFHFDDVLNIWDALFA----YGENLILIDYFCISMLTYIREHLLKSDSI 663
Query: 81 SNLKLLQNYPPISIRHLL 98
LK + YPP+ ++L
Sbjct: 664 YALKRIYKYPPVEDVYML 681
>sp|Q95LL3|TB22B_MACFA TBC1 domain family member 22B OS=Macaca fascicularis GN=TBC1D22B
PE=2 SV=1
Length = 505
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 27 WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLL-AGDFTSNLKL 85
W+ LL +E + +WDT S+P+G L VC A LI R+ +L DF L L
Sbjct: 409 WMNNLLMRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLIKWRKEILDEEDFQGLLML 468
Query: 86 LQNYPPI 92
LQN P I
Sbjct: 469 LQNLPTI 475
>sp|Q9NU19|TB22B_HUMAN TBC1 domain family member 22B OS=Homo sapiens GN=TBC1D22B PE=1 SV=3
Length = 505
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 27 WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLL-AGDFTSNLKL 85
W+ LL +E + +WDT S+P+G L VC A LI R+ +L DF L L
Sbjct: 409 WMNNLLMRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLIKWRKEILDEEDFQGLLML 468
Query: 86 LQNYPPI 92
LQN P I
Sbjct: 469 LQNLPTI 475
>sp|Q8WUA7|TB22A_HUMAN TBC1 domain family member 22A OS=Homo sapiens GN=TBC1D22A PE=1 SV=2
Length = 517
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 27 WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLL-AGDFTSNLKL 85
W+ LL +E + +WDT S+PDG L VC A L+ R+ +L DF L
Sbjct: 421 WMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLF 480
Query: 86 LQNYP 90
LQN P
Sbjct: 481 LQNLP 485
>sp|Q8R5A6|TB22A_MOUSE TBC1 domain family member 22A OS=Mus musculus GN=Tbc1d22a PE=2 SV=3
Length = 516
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 27 WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAG-DFTSNLKL 85
W+ LL +E + +WDT S+P+G L VC A L+ RR +L DF L
Sbjct: 420 WMNNLLMRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLVRWRREILEERDFQELLLF 479
Query: 86 LQNYP 90
LQN P
Sbjct: 480 LQNLP 484
>sp|Q95KI1|TB22A_MACFA TBC1 domain family member 22A (Fragment) OS=Macaca fascicularis
GN=TBC1D22A PE=2 SV=2
Length = 497
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 27 WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLL-AGDFTSNLKL 85
W+ LL +E + +WDT S+P+G L VC A L+ R+ +L DF L
Sbjct: 401 WMNNLLMREVPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLF 460
Query: 86 LQNYP 90
LQN P
Sbjct: 461 LQNLP 465
>sp|Q54VM3|TBC5A_DICDI TBC1 domain family member 5 homolog A OS=Dictyostelium discoideum
GN=tbc1d5A PE=1 SV=1
Length = 1173
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 27 WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLL 86
WI ++L Q F + L +WD++ + E L +C MLI+I+ +++ D++ L++L
Sbjct: 704 WIRIILAQVFPLDSLLILWDSIFKE--SVTEFLPYICLTMLIMIKDQIIEKDYSECLQVL 761
Query: 87 QNYP 90
+YP
Sbjct: 762 FHYP 765
>sp|Q92609|TBCD5_HUMAN TBC1 domain family member 5 OS=Homo sapiens GN=TBC1D5 PE=1 SV=1
Length = 795
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 20 VASRMIG--WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLR-VCCAMLILIRRRLLA 76
+A ++ G W+ LL +EF + L +WD L + DG L+ + AML+ IR L++
Sbjct: 325 IAPQIYGLRWVRLLFGREFPLQDLLVVWDALFA--DGLSLGLVDYIFVAMLLYIRDALIS 382
Query: 77 GDFTSNLKLLQNYPPISIRHLL 98
++ + L LL +YP I H L
Sbjct: 383 SNYQTCLGLLMHYPFIGDVHSL 404
>sp|Q80XQ2|TBCD5_MOUSE TBC1 domain family member 5 OS=Mus musculus GN=Tbc1d5 PE=1 SV=2
Length = 815
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 20 VASRMIG--WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAG 77
+A ++ G W+ LL +EF + L +WD L +D + V AML+ IR L++
Sbjct: 325 IAPQIYGLRWVRLLFGREFPLQDLLVVWDALFADSLN-LSLVDYVFTAMLLYIRDALISS 383
Query: 78 DFTSNLKLLQNYPPISIRHLL 98
++ + L LL +YP I H L
Sbjct: 384 NYQTCLGLLMHYPIIGDIHSL 404
>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=2
Length = 645
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 27 WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSN 82
W+ + +EF F + L +W+ L + GP LL V CA+L + R L+ F SN
Sbjct: 495 WLLIWFKREFPFPDVLRLWEVLWTGLPGPNLHLL-VACAILDMERDTLMLSGFGSN 549
>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=1 SV=2
Length = 648
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 27 WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSN 82
W+ + +EF F + L +W+ L + GP LL V CA+L + R L+ F SN
Sbjct: 495 WLLIWFKREFPFPDVLRLWEVLWTGLPGPNLHLL-VACAILDMERDTLMLSGFGSN 549
>sp|O59737|GYP1_SCHPO GTPase-activating protein gyp1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=gyp1 PE=3 SV=1
Length = 514
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 27 WITLLLTQEFNFANNLHIWDTLLSDP-DGPQETLLRVCCAMLILIRRRLLAGDFTSNLKL 85
W+ LL +E + +N + +WDT +++ G E L VC A L+ L +F L
Sbjct: 418 WMNCLLMRELSISNIIRMWDTYMAEGVQGFSEFHLYVCAAFLVKWSSELQKMEFQDILIF 477
Query: 86 LQNYP 90
LQ+ P
Sbjct: 478 LQSIP 482
>sp|Q5F361|TBCK_CHICK TBC domain-containing protein kinase-like protein OS=Gallus gallus
GN=TBCK PE=2 SV=2
Length = 893
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 25 IGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLK 84
I W + T F H+WDTLL G + A+L +R RLLA F +
Sbjct: 624 IPWFLTMFTHVFPLHKIFHLWDTLLL---GNSSFPFCIGVAILQQLRDRLLANGFNECIL 680
Query: 85 LLQNYPPISI 94
L + P I I
Sbjct: 681 LFSDLPEIDI 690
>sp|Q8TEA7|TBCK_HUMAN TBC domain-containing protein kinase-like protein OS=Homo sapiens
GN=TBCK PE=2 SV=4
Length = 893
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 25 IGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLK 84
I W + T F H+WDTLL G + A+L +R RLLA F +
Sbjct: 624 IPWFLTMFTHVFPLHKIFHLWDTLLL---GNSSFPFCIGVAILQQLRDRLLANGFNECIL 680
Query: 85 LLQNYPPISI 94
L + P I I
Sbjct: 681 LFSDLPEIDI 690
>sp|Q8BM85|TBCK_MOUSE TBC domain-containing protein kinase-like protein OS=Mus musculus
GN=Tbck PE=2 SV=1
Length = 762
Score = 36.6 bits (83), Expect = 0.052, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 25 IGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLK 84
I W + T F H+WDTLL G + A+L +R RLLA F +
Sbjct: 624 IPWFLTMFTHVFPLHKIFHLWDTLLL---GNSSFPFCIGVAILQQLRDRLLANGFNECIL 680
Query: 85 LLQNYPPISI 94
L + P I I
Sbjct: 681 LFSDLPEIDI 690
>sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1
Length = 671
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 27 WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLL 86
W+ + +EF+F + L +W+ + ++ LL +CCA+L +++++A + N ++L
Sbjct: 514 WLLIRFKREFSFLDILRLWEVMWTELPCKNFHLL-LCCAILESEKQQIMAKHYGFN-EIL 571
Query: 87 QNYPPISIR----HLLCVANKL 104
++ +S++ +LC A +
Sbjct: 572 KHINELSMKIDVEDILCKAEAI 593
>sp|Q0ASJ5|DAPE_MARMM Succinyl-diaminopimelate desuccinylase OS=Maricaulis maris (strain
MCS10) GN=dapE PE=3 SV=1
Length = 390
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 41 NLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPPIS 93
++H+ P GP TLL+ C R L G TS+ + +Q Y P++
Sbjct: 297 DIHVTGEAFLTPAGPFTTLLQDCVEAETGRRPALTTGGGTSDARFIQLYAPVA 349
>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2
Length = 691
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 27 WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLL 86
W+ + +EF+F + L +W+ + ++ LL +CCA+L +++++ + N ++L
Sbjct: 531 WLLIRFKREFSFLDILRLWEVMWTELPCTNFHLL-LCCAILESEKQQIMEKHYGFN-EIL 588
Query: 87 QNYPPISIR----HLLCVANKL 104
++ +S++ +LC A +
Sbjct: 589 KHINELSMKIDVEDILCKAEAI 610
>sp|O03204|NU4M_CERSI NADH-ubiquinone oxidoreductase chain 4 OS=Ceratotherium simum
GN=MT-ND4 PE=3 SV=1
Length = 459
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 1 MAVIVVWVCEVVKVWLLAVVASRMIGWITLLLTQEFNFANNLHIWDTLLSDP 52
M + + W+ + +W+ S +I +I+L L +FN N+L++ T SDP
Sbjct: 10 MLIPLTWLSKNSMIWINTTAYSLLISFISLPLLSQFN-ENSLNMSLTFFSDP 60
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.142 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,480,270
Number of Sequences: 539616
Number of extensions: 1257967
Number of successful extensions: 3259
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3239
Number of HSP's gapped (non-prelim): 24
length of query: 108
length of database: 191,569,459
effective HSP length: 76
effective length of query: 32
effective length of database: 150,558,643
effective search space: 4817876576
effective search space used: 4817876576
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)