Query 033935
Match_columns 108
No_of_seqs 114 out of 767
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:58:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033935.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033935hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4567 GTPase-activating prot 99.9 8.9E-25 1.9E-29 169.8 8.8 87 20-107 276-362 (370)
2 KOG1092 Ypt/Rab-specific GTPas 99.8 3.7E-21 8.1E-26 154.0 8.8 86 20-105 383-473 (484)
3 KOG1091 Ypt/Rab-specific GTPas 99.7 1.1E-16 2.3E-21 131.8 8.5 85 20-105 276-362 (625)
4 KOG1093 Predicted protein kina 99.4 1.8E-13 4E-18 113.5 6.5 85 19-106 507-591 (725)
5 KOG2224 Uncharacterized conser 99.1 1.4E-10 3.1E-15 94.6 5.9 88 18-106 640-730 (781)
6 PF00566 RabGAP-TBC: Rab-GTPas 98.9 9.8E-10 2.1E-14 78.8 4.3 53 20-75 162-214 (214)
7 KOG2223 Uncharacterized conser 98.7 2.7E-08 5.8E-13 81.2 6.7 76 20-98 472-548 (586)
8 COG5210 GTPase-activating prot 98.6 5E-08 1.1E-12 80.0 5.8 59 19-80 374-432 (496)
9 KOG2058 Ypt/Rab GTPase activat 98.5 2E-07 4.2E-12 76.0 4.8 69 20-91 315-384 (436)
10 smart00164 TBC Domain in Tre-2 98.3 3.7E-07 8.1E-12 65.4 2.8 34 20-53 165-198 (199)
11 KOG2197 Ypt/Rab-specific GTPas 98.2 1.4E-06 3.1E-11 71.9 4.8 86 20-106 354-442 (488)
12 KOG3636 Uncharacterized conser 98.2 4.9E-06 1.1E-10 68.5 6.4 87 19-107 180-273 (669)
13 KOG2595 Predicted GTPase activ 98.0 1.9E-05 4.1E-10 63.0 6.8 83 21-106 215-301 (395)
14 KOG2222 Uncharacterized conser 97.8 3.9E-05 8.5E-10 63.9 5.3 81 21-104 330-417 (848)
15 KOG4436 Predicted GTPase activ 97.5 0.0003 6.6E-09 61.1 6.8 81 19-102 738-823 (948)
16 KOG1102 Rab6 GTPase activator 97.3 0.00017 3.7E-09 58.2 2.4 68 21-91 302-369 (397)
17 KOG4347 GTPase-activating prot 96.4 0.0022 4.7E-08 54.7 2.7 71 17-90 354-425 (671)
18 KOG2801 Probable Rab-GAPs [Int 75.9 17 0.00038 29.3 7.3 76 26-105 211-293 (559)
19 PF14961 BROMI: Broad-minded p 73.6 5.8 0.00013 36.8 4.5 68 19-89 1191-1259(1296)
20 PRK05255 hypothetical protein; 70.1 11 0.00023 27.4 4.6 42 65-106 107-151 (171)
21 PF04751 DUF615: Protein of un 64.4 17 0.00037 25.9 4.6 41 65-105 96-139 (157)
22 COG5415 Predicted integral mem 56.1 15 0.00034 27.9 3.3 22 11-32 72-93 (251)
23 COG3028 Uncharacterized protei 45.0 51 0.0011 24.3 4.4 38 67-104 119-159 (187)
24 PF04510 DUF577: Family of unk 37.4 60 0.0013 23.8 3.8 53 42-95 45-102 (174)
25 TIGR01503 MthylAspMut_E methyl 33.5 92 0.002 26.3 4.7 37 67-103 11-55 (480)
26 COG3727 Vsr DNA G:T-mismatch r 33.5 40 0.00086 24.0 2.3 28 2-29 110-137 (150)
27 KOG1648 Uncharacterized conser 30.8 15 0.00032 31.7 -0.3 68 23-91 716-787 (813)
28 PF07340 Herpes_IE1: Cytomegal 28.9 1.9E+02 0.0041 23.8 5.7 50 57-106 203-256 (392)
29 PHA02754 hypothetical protein; 27.1 47 0.001 20.3 1.5 22 68-89 5-26 (67)
30 TIGR02508 type_III_yscG type I 26.7 1.7E+02 0.0038 19.9 4.4 29 73-101 48-77 (115)
31 PF09324 DUF1981: Domain of un 25.2 89 0.0019 19.7 2.7 64 42-106 19-84 (86)
32 PF10366 Vps39_1: Vacuolar sor 22.9 1.4E+02 0.0031 19.6 3.4 23 80-102 83-105 (108)
No 1
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=99.91 E-value=8.9e-25 Score=169.78 Aligned_cols=87 Identities=52% Similarity=0.934 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCCHHHHHHHHhCCCCCCHHHHHH
Q 033935 20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPPISIRHLLC 99 (108)
Q Consensus 20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~df~~~l~lLq~~p~~dv~~Il~ 99 (108)
+.+|+|||+.+|+++|||++|+++|||++|++.+ ..+++.|+|+||+...|+.|+++||..+|++|||+|+.|+.+++.
T Consensus 276 PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~-rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLLQ~yp~tdi~~~l~ 354 (370)
T KOG4567|consen 276 PQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ-RFDFLLYICCSMLILVRERILEGDFTVNMKLLQNYPTTDISKMLA 354 (370)
T ss_pred ccchhHHHHHHHHhccCCchhHHHHHHHHhcChh-hhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCCHHHHHH
Confidence 6789999999999999999999999999999996 689999999999999999999999999999999999999999999
Q ss_pred HHHhhhhc
Q 033935 100 VANKLRTL 107 (108)
Q Consensus 100 ~A~~l~~~ 107 (108)
.|.+++++
T Consensus 355 ~A~~Lr~~ 362 (370)
T KOG4567|consen 355 VADSLRDK 362 (370)
T ss_pred HHHHHHhc
Confidence 99999864
No 2
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.7e-21 Score=154.00 Aligned_cols=86 Identities=34% Similarity=0.597 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCCHHHHHHHHhCCCCC-----CH
Q 033935 20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPPI-----SI 94 (108)
Q Consensus 20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~df~~~l~lLq~~p~~-----dv 94 (108)
...|+|||++||+.||||+..++|+||+|+++++++.+||.|+|+|.|...+++|++.||.+++.+|||+|.. |+
T Consensus 383 ylQFAFRWmNcLLmRE~pl~~~iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~e~DFQ~~ilfLQnlPT~~W~d~eI 462 (484)
T KOG1092|consen 383 YLQFAFRWMNCLLMREFPLRCTIRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELMENDFQELILFLQNLPTHNWSDREI 462 (484)
T ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCccHHHH
Confidence 4689999999999999999999999999999998999999999999999999999999999999999999973 79
Q ss_pred HHHHHHHHhhh
Q 033935 95 RHLLCVANKLR 105 (108)
Q Consensus 95 ~~Il~~A~~l~ 105 (108)
+.++..|+.++
T Consensus 463 ellLseA~~~k 473 (484)
T KOG1092|consen 463 ELLLSEAFRLK 473 (484)
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 3
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.1e-16 Score=131.83 Aligned_cols=85 Identities=29% Similarity=0.526 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhccccCccchHHHHH-HHHcCCCCCchHHHHHHHHHHHHHHhHhhcCCHHHHHHHHhCCCC-CCHHHH
Q 033935 20 VASRMIGWITLLLTQEFNFANNLHIWD-TLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPP-ISIRHL 97 (108)
Q Consensus 20 ~~~f~~rW~~lLF~ref~l~~vl~IWD-~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~df~~~l~lLq~~p~-~dv~~I 97 (108)
+.+|++||+++||.||||+.+++.+|| .++.++. ...++.|+.+|||..+|+.|+.+++..|++.|.|||+ .|++++
T Consensus 276 pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~p-r~~Lv~~m~VsmLL~IRd~Llss~~~tcL~~Lm~yP~~~Dv~~~ 354 (625)
T KOG1091|consen 276 PQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSP-RGILVACMFVSMLLYIRDSLLSSEYQTCLQYLMNYPEIIDVDKF 354 (625)
T ss_pred hHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCc-hHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhcCCCcCcHHHH
Confidence 679999999999999999999999999 7777774 7789999999999999999999999999999999998 599999
Q ss_pred HHHHHhhh
Q 033935 98 LCVANKLR 105 (108)
Q Consensus 98 l~~A~~l~ 105 (108)
+++|..++
T Consensus 355 iekAl~l~ 362 (625)
T KOG1091|consen 355 IEKALHLQ 362 (625)
T ss_pred HHHHHHHH
Confidence 99999987
No 4
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.44 E-value=1.8e-13 Score=113.51 Aligned_cols=85 Identities=24% Similarity=0.424 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCCHHHHHHHHhCCCCCCHHHHH
Q 033935 19 VVASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPPISIRHLL 98 (108)
Q Consensus 19 ~~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~df~~~l~lLq~~p~~dv~~Il 98 (108)
++..||+.|+.++|+.+||+++.+.+||.++.+.+ .|..++++|++.+.|+.|+..+|++++.++.+.|++|++.++
T Consensus 507 ~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~---SFplmi~vAil~~lR~~LLa~nfne~illf~d~pdldId~~I 583 (725)
T KOG1093|consen 507 IPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHS---SFPLMIGVAILIQLRDPLLACNFNECILLFSDLPDLDIDVCI 583 (725)
T ss_pred cHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHhhhhhhhCCchhheeeeccCCcccHHHHH
Confidence 57789999999999999999999999999999986 799999999999999999999999999999999999999999
Q ss_pred HHHHhhhh
Q 033935 99 CVANKLRT 106 (108)
Q Consensus 99 ~~A~~l~~ 106 (108)
+..+++++
T Consensus 584 res~~l~e 591 (725)
T KOG1093|consen 584 RESYHLME 591 (725)
T ss_pred HHHhhhhh
Confidence 99999875
No 5
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.10 E-value=1.4e-10 Score=94.64 Aligned_cols=88 Identities=18% Similarity=0.235 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCC--HHHHHHHHhCCCC-CCH
Q 033935 18 AVVASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGD--FTSNLKLLQNYPP-ISI 94 (108)
Q Consensus 18 ~~~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~d--f~~~l~lLq~~p~-~dv 94 (108)
|.-++||.||++++|+||||-..++|+|+..+++.. ...|+.++|+|++-.+.++.++++ -++.+-.+.|+.. .|.
T Consensus 640 ~lellfchrwlllcfkref~ea~airiweacwa~y~-tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~mdg 718 (781)
T KOG2224|consen 640 GLELLFCHRWLLLCFKREFPEAEAIRIWEACWAHYL-TDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMHMDG 718 (781)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhhcCc
Confidence 567899999999999999999999999999999874 567999999999999999999866 3555555566654 699
Q ss_pred HHHHHHHHhhhh
Q 033935 95 RHLLCVANKLRT 106 (108)
Q Consensus 95 ~~Il~~A~~l~~ 106 (108)
+-|+++|..+..
T Consensus 719 elilrkar~ll~ 730 (781)
T KOG2224|consen 719 ELILRKARGLLH 730 (781)
T ss_pred hhhHHHHHHHHH
Confidence 999999998753
No 6
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=98.93 E-value=9.8e-10 Score=78.79 Aligned_cols=53 Identities=25% Similarity=0.478 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhh
Q 033935 20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLL 75 (108)
Q Consensus 20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll 75 (108)
+..|+++|+.++|++++|.++++|+||.++ +++ ..++.++|+|++...|++||
T Consensus 162 ~~~~~~~w~~~lF~~~l~~~~~~~lwD~l~-~g~--~~~l~~~~lail~~~~~~il 214 (214)
T PF00566_consen 162 PEIYAFPWFLTLFSRSLPFDDVLRLWDFLL-EGY--KFFLFFIALAILKYLRDQIL 214 (214)
T ss_dssp GHHHHHHHHHTTTTTTS-HHHHHHHHHHHH-HCT--THHHHHHHHHHHHHTHHHHH
T ss_pred hhhhhhhhhHhhcCCcCCHHHHHHHHHHHH-cCC--CcHHHHHHHHHHHHHHHHhC
Confidence 677999999999999999999999999555 543 13499999999999999886
No 7
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=98.73 E-value=2.7e-08 Score=81.17 Aligned_cols=76 Identities=26% Similarity=0.467 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCCHHHHHHHHhCCCC-CCHHHHH
Q 033935 20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPP-ISIRHLL 98 (108)
Q Consensus 20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~df~~~l~lLq~~p~-~dv~~Il 98 (108)
+=.|.+.|+.++|+...|++-..||||+++-+++ +|++..++++++.++++|+.+||..+.++|.+.|+ +..++++
T Consensus 472 PDiylidwiftlyskslpldlacRIwDvy~rdge---eFlfr~~lgIlklyepkLl~mDf~~~~qfLtklp~dL~~eelF 548 (586)
T KOG2223|consen 472 PDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGE---EFLFRTALGILKLYEPKLLVMDFIHVAQFLTKLPEDLTPEELF 548 (586)
T ss_pred CchhhHHHHHHHHhccCChHHhhhhhheeeecch---HHHHHHHHHHHHHccchHhhhhHHHHHHHHHhCcccCCHHHHH
Confidence 4578999999999999999999999999999997 89999999999999999999999999999999996 4454444
No 8
>COG5210 GTPase-activating protein [General function prediction only]
Probab=98.64 E-value=5e-08 Score=80.01 Aligned_cols=59 Identities=31% Similarity=0.537 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCCHH
Q 033935 19 VVASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFT 80 (108)
Q Consensus 19 ~~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~df~ 80 (108)
....|++||+.++|.++||++.++||||++|.++. ++.+-+.+|++...+++++..+.+
T Consensus 374 ~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~---~~l~~~~~~~l~~~~~~l~~~~~~ 432 (496)
T COG5210 374 VLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGS---SMLFQLALAILKLLRDKLLKLDSD 432 (496)
T ss_pred chhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhhhhhhhccCch
Confidence 56789999999999999999999999999999885 788899999999999999886543
No 9
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=2e-07 Score=75.99 Aligned_cols=69 Identities=23% Similarity=0.403 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCC-HHHHHHHHhCCCC
Q 033935 20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGD-FTSNLKLLQNYPP 91 (108)
Q Consensus 20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~d-f~~~l~lLq~~p~ 91 (108)
..+++++|++++|+...|.+.++||||++|.++. ++++.+++|++...++++++.+ -.++.+.++.++.
T Consensus 315 ~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGs---kvlfr~Alai~k~~ee~il~~~~~~~i~~~~~~~~~ 384 (436)
T KOG2058|consen 315 ASLETLPWFLTLFVDILPSETVLRIWDCLFYEGS---KVLFRVALAILKKHEEEILKEDSSKEILRVLPDLTK 384 (436)
T ss_pred eeeeehhhhHHHhcccccHHHHHHHHHHHHhccc---HHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999996 9999999999999999999844 6667777765553
No 10
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=98.32 E-value=3.7e-07 Score=65.35 Aligned_cols=34 Identities=24% Similarity=0.541 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhccccCccchHHHHHHHHcCCC
Q 033935 20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPD 53 (108)
Q Consensus 20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~ 53 (108)
+..|++||+.++|+++||++.++|+||.++++|.
T Consensus 165 ~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~ 198 (199)
T smart00164 165 PSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS 198 (199)
T ss_pred chhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence 6789999999999999999999999999999874
No 11
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=98.24 E-value=1.4e-06 Score=71.92 Aligned_cols=86 Identities=21% Similarity=0.280 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhc--CCHHHHHHHHhCCCC-CCHHH
Q 033935 20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLA--GDFTSNLKLLQNYPP-ISIRH 96 (108)
Q Consensus 20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~--~df~~~l~lLq~~p~-~dv~~ 96 (108)
-..|++||+...|.|||..+|++++|+.++++.. ..+|+.|++.|++..-++.++. .++.+.++.....+. .|...
T Consensus 354 ~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~-~~~f~~~~~~~~l~~~~~~l~~~~~~~~e~l~~i~~~~~~~d~~~ 432 (488)
T KOG2197|consen 354 DLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLP-SPHFHLYVAPAILNKDPQTLMEQGKSFNEVLKHVNLLSEKADVLW 432 (488)
T ss_pred ccceeeehhhcccccccccccHHHHHHHHHhcCc-cchHHHHHHHhhhhcchHHHHhcCccchhHHhhcccccccchhhh
Confidence 3578999999999999999999999999999886 4599999999999998888876 447888887766654 58888
Q ss_pred HHHHHHhhhh
Q 033935 97 LLCVANKLRT 106 (108)
Q Consensus 97 Il~~A~~l~~ 106 (108)
++..|....+
T Consensus 433 ~~~~A~~~~~ 442 (488)
T KOG2197|consen 433 VLVRAEALER 442 (488)
T ss_pred HHHHHHHHHH
Confidence 8888876654
No 12
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=98.16 E-value=4.9e-06 Score=68.53 Aligned_cols=87 Identities=16% Similarity=0.326 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhc--CC-HHHHHHHHhCCCC----
Q 033935 19 VVASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLA--GD-FTSNLKLLQNYPP---- 91 (108)
Q Consensus 19 ~~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~--~d-f~~~l~lLq~~p~---- 91 (108)
++-+|+..|+-.||+..-+.+.+.-+||-++...+ +-+++++++-+|..-|++|+. +| -++++++|.|.|.
T Consensus 180 tPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaD--PF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~ 257 (669)
T KOG3636|consen 180 TPDMYTLNWFASLFASSMSTEVCHALWDLYIQQAD--PFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSV 257 (669)
T ss_pred CchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC--ceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhccc
Confidence 47789999999999999999999999999999886 357778889999999999986 44 6899999999995
Q ss_pred CCHHHHHHHHHhhhhc
Q 033935 92 ISIRHLLCVANKLRTL 107 (108)
Q Consensus 92 ~dv~~Il~~A~~l~~~ 107 (108)
.|+....+.|..+..|
T Consensus 258 eDvpDffsLAqyY~~K 273 (669)
T KOG3636|consen 258 EDVPDFFSLAQYYSDK 273 (669)
T ss_pred ccchhHHHHHHHHhhc
Confidence 2899999998876543
No 13
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=98.01 E-value=1.9e-05 Score=62.96 Aligned_cols=83 Identities=17% Similarity=0.268 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhcccc-CccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCC--HHHHHHHHhCCCC-CCHHH
Q 033935 21 ASRMIGWITLLLTQEF-NFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGD--FTSNLKLLQNYPP-ISIRH 96 (108)
Q Consensus 21 ~~f~~rW~~lLF~ref-~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~d--f~~~l~lLq~~p~-~dv~~ 96 (108)
.+|++.|+++.|++.. ++..++|+.|.+++... -.-.|+|++++...|.+|++.| -+-.=.+|+.+|. .+.++
T Consensus 215 tlFaLsWllTWFaH~L~~~~~vvRlfD~Flas~p---l~piyv~A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~lp~d~ 291 (395)
T KOG2595|consen 215 TLFALSWLLTWFAHNLKDIRIVVRLFDFFLASHP---LLPIYVYAAVVLYRRSEILKCDCDMSLLHGLLSTIPQDLPYDT 291 (395)
T ss_pred ceehhhHHHHHHhhcchhHHHHHHHHHHHHhcCc---chhHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhCccccCHHH
Confidence 5799999999999999 57788999999999874 4889999999999999999855 3334467799995 79999
Q ss_pred HHHHHHhhhh
Q 033935 97 LLCVANKLRT 106 (108)
Q Consensus 97 Il~~A~~l~~ 106 (108)
+++.+..+..
T Consensus 292 lik~s~~~i~ 301 (395)
T KOG2595|consen 292 LIKESVLLIT 301 (395)
T ss_pred HHHHHHHHHh
Confidence 9998866543
No 14
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=97.79 E-value=3.9e-05 Score=63.89 Aligned_cols=81 Identities=15% Similarity=0.342 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhc-----CCHHHHHHHHhCCCC--CC
Q 033935 21 ASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLA-----GDFTSNLKLLQNYPP--IS 93 (108)
Q Consensus 21 ~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~-----~df~~~l~lLq~~p~--~d 93 (108)
++....|++++|+.-|.+...+|+||.+|.++. --++.+.++||+.-..+|.+ .+-.++...|..+|. .|
T Consensus 330 slitl~w~ltlf~nv~~~killriwd~~fy~g~---i~ifql~i~ilkmkeqdi~~iaettensa~if~als~ip~~vtd 406 (848)
T KOG2222|consen 330 SLITLHWFLTLFANVFHMKILLRIWDFFFYEGG---INIFQLIIGILKMKEQDIKEIAETTENSADIFNALSDIPAEVTD 406 (848)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHhheecCc---chhHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHhCCchhhh
Confidence 456789999999999999999999999999884 34567888999988887765 346788999999996 49
Q ss_pred HHHHHHHHHhh
Q 033935 94 IRHLLCVANKL 104 (108)
Q Consensus 94 v~~Il~~A~~l 104 (108)
+++++++|.+.
T Consensus 407 ve~l~~~~~~~ 417 (848)
T KOG2222|consen 407 VEKLFEQAGEF 417 (848)
T ss_pred HHHHHHHHhhc
Confidence 99999988653
No 15
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=97.50 E-value=0.0003 Score=61.13 Aligned_cols=81 Identities=15% Similarity=0.313 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCC-HHHHHHHHhCCCCC----C
Q 033935 19 VVASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGD-FTSNLKLLQNYPPI----S 93 (108)
Q Consensus 19 ~~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~d-f~~~l~lLq~~p~~----d 93 (108)
-+..|+.+|+.+.|+..||+.-+-|+.|.+|-.+. +.++-++.+++-.-+..|++.| |++++.++++.-+. .
T Consensus 738 ~pslyAapw~lt~fasQf~lGfvarvfd~~flq~t---evifK~a~~llsv~k~~l~e~dn~e~i~d~~k~~~p~~~~~e 814 (948)
T KOG4436|consen 738 SPSLYAAPWFLTVFASQFPLGFVARVFDLIFLQGT---EVIFKVALSLLSVHKQLLLEKDNFEEIVDFLKTTLPKMEHTE 814 (948)
T ss_pred ChHHhhhHHHHHHHHhhCcchHHHHHHHHHHhhcc---chhhhhHHHHHHhhHHHHHhhhhHHHHHHHHHHhhhhhhHHH
Confidence 36899999999999999999999999999999875 7889999999999999999966 99999999988652 5
Q ss_pred HHHHHHHHH
Q 033935 94 IRHLLCVAN 102 (108)
Q Consensus 94 v~~Il~~A~ 102 (108)
.++|+++-.
T Consensus 815 meki~~qvf 823 (948)
T KOG4436|consen 815 MEKIIKQVF 823 (948)
T ss_pred HHHHHHHHH
Confidence 566665543
No 16
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=97.26 E-value=0.00017 Score=58.22 Aligned_cols=68 Identities=29% Similarity=0.418 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCCHHHHHHHHhCCCC
Q 033935 21 ASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPP 91 (108)
Q Consensus 21 ~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~df~~~l~lLq~~p~ 91 (108)
.+|+.+|++++|+..||++-..++||.++.++ ......+..++++...+.+...+++..++.+++-+.
T Consensus 302 ~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g---~~i~~~~~~~l~~~~~~~~~~~~~e~~~~~l~~~~~ 369 (397)
T KOG1102|consen 302 SMYASQWFLTLFAAKFPLELVLRIWDALFVEG---VSILFRFSLALLKHKADDLLDLDFESLLSYLRVDLP 369 (397)
T ss_pred ceeccceeeEeeeccccHHHHHHHhHHHHHhc---hHHHHHHHHHHhhhhhHHHhhccHHHHHHHHhcccH
Confidence 47999999999999999999999999999998 478999999999999999999999999999988875
No 17
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=96.44 E-value=0.0022 Score=54.69 Aligned_cols=71 Identities=20% Similarity=0.336 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhc-CCHHHHHHHHhCCC
Q 033935 17 LAVVASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLA-GDFTSNLKLLQNYP 90 (108)
Q Consensus 17 ~~~~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~-~df~~~l~lLq~~p 90 (108)
+|+...-.+.|+.++|-..+|++..+||=|++|-++. +.++-+++|++....+.|++ .|-.+.|..++||-
T Consensus 354 l~~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~eG~---rvlFqiaLail~~N~~~il~~~dDge~~~vl~~y~ 425 (671)
T KOG4347|consen 354 LGQLSTVSLSWFLSLFLSLMPLEYAVRILDCFFYEGP---RVLFQIALAILKQNAERILSATDDGEAMMVLGNYF 425 (671)
T ss_pred hcccceEeeHHHHHHHHHHcchHHHHHHHhhhhhccc---HHHHHHHHHHHHhhHHHhcccCCchHHHHHHHHHH
Confidence 3456677899999999999999999999999999995 89999999999999999998 44577888877763
No 18
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.90 E-value=17 Score=29.30 Aligned_cols=76 Identities=22% Similarity=0.333 Sum_probs=57.0
Q ss_pred HHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhH----hhcCC--HHHHHHHHhCCCC-CCHHHHH
Q 033935 26 GWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRR----LLAGD--FTSNLKLLQNYPP-ISIRHLL 98 (108)
Q Consensus 26 rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~----Ll~~d--f~~~l~lLq~~p~-~dv~~Il 98 (108)
.|-+-+| .|+|+----|+.|.++.+++ +.+..+++|+++...+. -+++| -.++-.+.+++.. ..+++++
T Consensus 211 dwqrwlf-gelplcyfarvfdvflvegy---kvlyrvalailkffhkvragqplesdsvkqdirtfvrdiaktvspekll 286 (559)
T KOG2801|consen 211 DWQRWLF-GELPLCYFARVFDVFLVEGY---KVLYRVALAILKFFHKVRAGQPLESDSVKQDIRTFVRDIAKTVSPEKLL 286 (559)
T ss_pred HHHHHHh-ccchHHHHHHHhhheeecch---HHHHHHHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHHHhhCCHHHHH
Confidence 5655555 57888888899999999996 88999999999987643 34455 2455566677765 5889999
Q ss_pred HHHHhhh
Q 033935 99 CVANKLR 105 (108)
Q Consensus 99 ~~A~~l~ 105 (108)
++|..++
T Consensus 287 ekafair 293 (559)
T KOG2801|consen 287 EKAFAIR 293 (559)
T ss_pred HHHHHHH
Confidence 9887765
No 19
>PF14961 BROMI: Broad-minded protein
Probab=73.56 E-value=5.8 Score=36.82 Aligned_cols=68 Identities=12% Similarity=0.168 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCCHHH-HHHHHhCC
Q 033935 19 VVASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTS-NLKLLQNY 89 (108)
Q Consensus 19 ~~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~df~~-~l~lLq~~ 89 (108)
.+..-|.||+.-+|=.-++-+++..-=-...-.+. +|..|+|+|+++...++|+...-++ ...+|+.-
T Consensus 1191 tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~---dyqvY~~VailkHlq~~ilq~~q~q~L~~flke~ 1259 (1296)
T PF14961_consen 1191 TPSQICQRWLSQCFWNYLDWPEICHYIAICILYGP---DYQVYICVAILKHLQPEILQHTQTQDLQVFLKEE 1259 (1296)
T ss_pred CHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCc---cceeehhHHHHHHhhHHHHHhhhhchHHHHhhhc
Confidence 45678999999999999998777433332233342 6999999999999999999744333 33344333
No 20
>PRK05255 hypothetical protein; Provisional
Probab=70.10 E-value=11 Score=27.45 Aligned_cols=42 Identities=31% Similarity=0.385 Sum_probs=32.1
Q ss_pred HHHHHHHhHhhcCCHHHHHHHHhCCCCCC---HHHHHHHHHhhhh
Q 033935 65 AMLILIRRRLLAGDFTSNLKLLQNYPPIS---IRHLLCVANKLRT 106 (108)
Q Consensus 65 aiL~~~r~~Ll~~df~~~l~lLq~~p~~d---v~~Il~~A~~l~~ 106 (108)
--+..+|+.|++.|-+.+-+++..||..| ..++++.|.+=.+
T Consensus 107 h~lE~wRdrLi~~~d~al~e~~~~~P~~DrQ~LRqLiR~A~kE~~ 151 (171)
T PRK05255 107 HKLERWRDRLLAEGDDALTEFLEEYPDADRQQLRQLIRNAKKEKA 151 (171)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHCchhhHHHHHHHHHHHHHHHH
Confidence 35778999999976677778999999987 4566777766443
No 21
>PF04751 DUF615: Protein of unknown function (DUF615); InterPro: IPR006839 The proteins in this entry are functionally uncharacterised. The entry contains the Escherichia coli (strain K12) protein YjgA (P0A8X0 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2P0T_A.
Probab=64.38 E-value=17 Score=25.91 Aligned_cols=41 Identities=32% Similarity=0.363 Sum_probs=30.6
Q ss_pred HHHHHHHhHhhcCCHHHHHHHHhCCCCCCHH---HHHHHHHhhh
Q 033935 65 AMLILIRRRLLAGDFTSNLKLLQNYPPISIR---HLLCVANKLR 105 (108)
Q Consensus 65 aiL~~~r~~Ll~~df~~~l~lLq~~p~~dv~---~Il~~A~~l~ 105 (108)
-.+..+|+.|++.|-+.+-.++..+|..|.. ++++.|.+=.
T Consensus 96 h~lE~wRdrLi~~~~~al~e~~~~~p~~D~Q~LRqLiR~a~ke~ 139 (157)
T PF04751_consen 96 HRLERWRDRLIADDDSALTEFLAEYPDADRQQLRQLIRNARKER 139 (157)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHSTTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHCChhhHHHHHHHHHHHHHHH
Confidence 3678899999998878888999999998754 5666666543
No 22
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=56.13 E-value=15 Score=27.92 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 033935 11 VVKVWLLAVVASRMIGWITLLL 32 (108)
Q Consensus 11 ~~~~~~~~~~~~f~~rW~~lLF 32 (108)
++.+.++|..++|.+||.++.|
T Consensus 72 ~It~~llgs~slymfrwal~~l 93 (251)
T COG5415 72 VITALLLGSGSLYMFRWALTKL 93 (251)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 5678899999999999998866
No 23
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.02 E-value=51 Score=24.29 Aligned_cols=38 Identities=32% Similarity=0.372 Sum_probs=28.7
Q ss_pred HHHHHhHhhcCCHHHHHHHHhCCCCCCH---HHHHHHHHhh
Q 033935 67 LILIRRRLLAGDFTSNLKLLQNYPPISI---RHLLCVANKL 104 (108)
Q Consensus 67 L~~~r~~Ll~~df~~~l~lLq~~p~~dv---~~Il~~A~~l 104 (108)
+...|+.|++.+-+-+-.++..||+.|- ..+++.|.+=
T Consensus 119 lE~~RdrLia~GD~Alt~~l~~~P~aDrq~LR~LvRna~kE 159 (187)
T COG3028 119 LEQLRDRLIAEGDGALTEFLNQYPDADRQQLRTLIRNAKKE 159 (187)
T ss_pred HHHHHHHHHhcCchHHHHHHHHCCcccHHHHHHHHHHHHHH
Confidence 5678999998644678889999999874 4566666553
No 24
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=37.45 E-value=60 Score=23.75 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=32.0
Q ss_pred HHHHHHHHcCCCC--CchHHHHHHHHHHHHHHhHhhc--CC-HHHHHHHHhCCCCCCHH
Q 033935 42 LHIWDTLLSDPDG--PQETLLRVCCAMLILIRRRLLA--GD-FTSNLKLLQNYPPISIR 95 (108)
Q Consensus 42 l~IWD~~f~~~~~--~~~~~~~i~vaiL~~~r~~Ll~--~d-f~~~l~lLq~~p~~dv~ 95 (108)
--+||++.+...+ ...++.|+|++|-. .++-+.. .+ +.++.+.|.+-.+.|.+
T Consensus 45 ~eL~d~Ils~~~~e~~kA~~IF~~L~~~l-~~efl~~~~~~L~~~~~~~L~~p~~~d~~ 102 (174)
T PF04510_consen 45 DELSDCILSLSENEPVKAFHIFICLPMPL-YGEFLIPFMENLLPEISKVLLPPEEVDVE 102 (174)
T ss_pred hhHHHHHHHhhccchHHHHHHHHhCCchh-hhhHHHHHHHHHHHHHHHHcCCchhccHH
Confidence 3567999985432 34589999999666 6666554 22 45555555444334443
No 25
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=33.48 E-value=92 Score=26.30 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=30.7
Q ss_pred HHHHHhHhhcC-------CHHHHHHHHhCCCC-CCHHHHHHHHHh
Q 033935 67 LILIRRRLLAG-------DFTSNLKLLQNYPP-ISIRHLLCVANK 103 (108)
Q Consensus 67 L~~~r~~Ll~~-------df~~~l~lLq~~p~-~dv~~Il~~A~~ 103 (108)
+...|+++++. ||++++...++.|+ .+..+.+++|.+
T Consensus 11 f~~~r~evl~~w~t~~~vd~~eav~y~k~~p~~k~f~~~L~~a~~ 55 (480)
T TIGR01503 11 FHKIREEVLQQWPTGKDVDLQDAVDYHKSIPAHKNFAEKLELAKK 55 (480)
T ss_pred HHHHHHHHhhcCCccccCCHHHHHHHHHhCCccccHHHHHHHHHh
Confidence 45667778875 89999999999997 688888888874
No 26
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=33.48 E-value=40 Score=23.96 Aligned_cols=28 Identities=36% Similarity=0.608 Sum_probs=21.0
Q ss_pred eeEehhhhHHHHHHHHHHHHHHHHHHHH
Q 033935 2 AVIVVWVCEVVKVWLLAVVASRMIGWIT 29 (108)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~f~~rW~~ 29 (108)
.|+|||-||+-|-=.++.-.--..+|+.
T Consensus 110 rvlvVWEC~~r~kas~a~~l~rl~~~~s 137 (150)
T COG3727 110 RVLVVWECALRKKASDAARLERLEEWIS 137 (150)
T ss_pred eEEEEEeeechHHHhHHHHHHHHHHHHh
Confidence 5899999999777666666666666654
No 27
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=30.78 E-value=15 Score=31.68 Aligned_cols=68 Identities=13% Similarity=0.291 Sum_probs=50.5
Q ss_pred HHHHHHHHHhccccCccchHHHHHHHHcCCC--CCchHHHHHHHHHHHHHHhHhhc--CCHHHHHHHHhCCCC
Q 033935 23 RMIGWITLLLTQEFNFANNLHIWDTLLSDPD--GPQETLLRVCCAMLILIRRRLLA--GDFTSNLKLLQNYPP 91 (108)
Q Consensus 23 f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~--~~~~~~~~i~vaiL~~~r~~Ll~--~df~~~l~lLq~~p~ 91 (108)
-.|||+..-|.||.+.+-....|..++++.. -...+.+++..+. ..+-+.++. -|+++.+++++...+
T Consensus 716 ~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~-~~~~~~~~t~~~~~t~~i~~~~~~~e 787 (813)
T KOG1648|consen 716 LSFRWFLLDFKRELSYECTYKVWEVIWAAQRLRITDDFAIFFGLAT-TNYHDVLITNNFDYTDMIKFFNEMAE 787 (813)
T ss_pred cceeeeccCcccccCCCCcceeeEeeccccccccCcchhhhhhhHH-HhhHHHHhhcccchHHHHHHHHHHHh
Confidence 3599999999999999999999999999763 2345777777776 455555554 345777777766554
No 28
>PF07340 Herpes_IE1: Cytomegalovirus IE1 protein; InterPro: IPR010855 Expression from a human cytomegalovirus early promoter (E1.7) has been shown to be activated in trans by the IE2 gene product. Although the IE1 gene product alone had no effect on this early viral promoter, maximal early promoter activity was detected when both IE1 and IE2 gene products were present []. The IE1 protein from cytomegalovirus is also known as UL123.; GO: 0050792 regulation of viral reproduction, 0042025 host cell nucleus
Probab=28.88 E-value=1.9e+02 Score=23.85 Aligned_cols=50 Identities=12% Similarity=0.164 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHhHhhc----CCHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Q 033935 57 ETLLRVCCAMLILIRRRLLA----GDFTSNLKLLQNYPPISIRHLLCVANKLRT 106 (108)
Q Consensus 57 ~~~~~i~vaiL~~~r~~Ll~----~df~~~l~lLq~~p~~dv~~Il~~A~~l~~ 106 (108)
.-..|.|...+.+.-+-+-. ..-++.+-+|+|+|.-|.+.+.+.|.++.+
T Consensus 203 ~k~~Yt~~Ky~e~~mk~~~~PKttn~~sQA~~fL~nlp~~d~d~v~~~g~~iik 256 (392)
T PF07340_consen 203 RKCTYTCLKYIEMFMKNLCMPKTTNGQSQAKAFLRNLPQCDPDEVNEYGQKIIK 256 (392)
T ss_pred HHHHHHHHHHHHHHHccCCCCCCcccHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 44567777666665443322 235899999999999999999999988764
No 29
>PHA02754 hypothetical protein; Provisional
Probab=27.11 E-value=47 Score=20.28 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=17.6
Q ss_pred HHHHhHhhcCCHHHHHHHHhCC
Q 033935 68 ILIRRRLLAGDFTSNLKLLQNY 89 (108)
Q Consensus 68 ~~~r~~Ll~~df~~~l~lLq~~ 89 (108)
..+++.|+++||.+.|+-+++.
T Consensus 5 eEi~k~i~eK~Fke~MRelkD~ 26 (67)
T PHA02754 5 EEIPKAIMEKDFKEAMRELKDI 26 (67)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3567888999999999887654
No 30
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=26.69 E-value=1.7e+02 Score=19.90 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=22.8
Q ss_pred Hhhc-CCHHHHHHHHhCCCCCCHHHHHHHH
Q 033935 73 RLLA-GDFTSNLKLLQNYPPISIRHLLCVA 101 (108)
Q Consensus 73 ~Ll~-~df~~~l~lLq~~p~~dv~~Il~~A 101 (108)
.||+ +||.+.+.+.+..|..|++..+..+
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALc 77 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALC 77 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHH
Confidence 3666 7799999999998877887776544
No 31
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=25.22 E-value=89 Score=19.66 Aligned_cols=64 Identities=14% Similarity=0.244 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCC--CCchHHHHHHHHHHHHHHhHhhcCCHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Q 033935 42 LHIWDTLLSDPD--GPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPPISIRHLLCVANKLRT 106 (108)
Q Consensus 42 l~IWD~~f~~~~--~~~~~~~~i~vaiL~~~r~~Ll~~df~~~l~lLq~~p~~dv~~Il~~A~~l~~ 106 (108)
++=...++++.. ...+.+.- |+..+..-+.+-++++-..++..+......+-+.++..|.+.-+
T Consensus 19 L~Pf~~i~~~~~~~~vre~il~-ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 19 LKPFEYIMSNNPSIDVRELILE-CILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHhccCcHHHHHHHHH-HHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 334455554432 12333333 44445555555557778888999988777667888888887654
No 32
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=22.89 E-value=1.4e+02 Score=19.62 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=18.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH
Q 033935 80 TSNLKLLQNYPPISIRHLLCVAN 102 (108)
Q Consensus 80 ~~~l~lLq~~p~~dv~~Il~~A~ 102 (108)
..+++.||++|+.|.+-|++-|.
T Consensus 83 ~~iv~yL~~L~~~~~dLI~~~s~ 105 (108)
T PF10366_consen 83 ETIVQYLQKLGNEDLDLIFEYSD 105 (108)
T ss_pred hHHHHHHHhCChhhhHHHHHhcc
Confidence 34589999999988888887653
Done!