Query 033935
Match_columns 108
No_of_seqs 114 out of 767
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 13:16:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033935.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033935hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qwl_A TBC1 domain family memb 99.8 6.6E-20 2.3E-24 140.5 6.1 83 22-107 202-285 (294)
2 2qfz_A TBC1 domain family memb 99.8 2.3E-19 7.8E-24 138.4 8.9 88 20-107 242-335 (345)
3 1fkm_A Protein (GYP1P), ORF YO 99.8 9.6E-20 3.3E-24 143.8 6.6 87 20-106 229-380 (396)
4 2qq8_A TBC1 domain family memb 99.7 2.5E-18 8.5E-23 132.6 6.7 83 20-105 226-309 (334)
5 4hl4_A TBC1 domain family memb 99.7 8.2E-18 2.8E-22 127.4 7.3 85 20-107 200-288 (292)
6 3hzj_A Rabgap1L, RAB GTPase-ac 99.7 2E-17 6.8E-22 125.9 3.2 83 20-105 187-275 (310)
7 3qye_A TBC1 domain family memb 99.7 5.1E-17 1.7E-21 124.5 5.3 84 20-106 221-309 (331)
8 2p0t_A UPF0307 protein pspto_4 63.4 13 0.00044 26.1 4.9 42 65-106 106-150 (176)
9 1r7c_A Genome polyprotein; mem 33.6 27 0.00093 17.7 1.9 14 6-19 10-26 (31)
10 2p58_C Putative type III secre 27.3 97 0.0033 20.2 4.2 37 63-101 41-78 (116)
11 2kvs_A Uncharacterized protein 26.2 32 0.0011 21.2 1.6 32 76-107 39-71 (80)
12 3vjz_A DMP19, putative unchara 22.6 76 0.0026 22.0 3.2 39 69-107 54-106 (166)
13 2uwj_G Type III export protein 21.4 95 0.0032 20.2 3.3 37 63-101 40-77 (115)
14 2czy_A Paired amphipathic heli 20.7 1.1E+02 0.0037 18.1 3.3 43 63-105 7-53 (77)
15 2cwy_A Hypothetical protein TT 20.4 1.4E+02 0.0048 18.2 3.9 63 43-105 22-92 (94)
16 2da7_A Zinc finger homeobox pr 20.1 40 0.0014 20.2 1.2 7 10-16 47-53 (71)
No 1
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=99.79 E-value=6.6e-20 Score=140.49 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCCH-HHHHHHHhCCCCCCHHHHHHH
Q 033935 22 SRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDF-TSNLKLLQNYPPISIRHLLCV 100 (108)
Q Consensus 22 ~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~df-~~~l~lLq~~p~~dv~~Il~~ 100 (108)
+++.||++++|+++||+++++||||.+|+++. ++++++|+|+++..|++|++.|+ ++++++||++|+.|++.++++
T Consensus 202 ~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~---~~l~~valAiL~~~r~~Ll~~~~~~~il~~Lq~lp~~di~~ll~~ 278 (294)
T 3qwl_A 202 LPYDLWFKRCFAGCLPESSLQRVWDKVVSGSC---KILVFVAVEILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSK 278 (294)
T ss_dssp SCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCS---THHHHHHHHHHHHTHHHHHHCCSHHHHHHHHTTCCSTTHHHHHHH
T ss_pred hHHHHHHHHHhccCCCHHHHHHHHHHHHhCCc---hHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCcccHHHHHHH
Confidence 34459999999999999999999999999775 89999999999999999999886 888999999999999999999
Q ss_pred HHhhhhc
Q 033935 101 ANKLRTL 107 (108)
Q Consensus 101 A~~l~~~ 107 (108)
|..++++
T Consensus 279 A~~l~~~ 285 (294)
T 3qwl_A 279 AIDLWHK 285 (294)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=99.79 E-value=2.3e-19 Score=138.39 Aligned_cols=88 Identities=34% Similarity=0.557 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhc-CCHHHHHHHHhCCCCC-----C
Q 033935 20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLA-GDFTSNLKLLQNYPPI-----S 93 (108)
Q Consensus 20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~-~df~~~l~lLq~~p~~-----d 93 (108)
+..|++||++++|+++||+++++||||.+|++++++..+++|+|+|++...|++|++ .||++++++||++|+. |
T Consensus 242 ~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~d 321 (345)
T 2qfz_A 242 YLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDED 321 (345)
T ss_dssp HHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHHH
T ss_pred hhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchhH
Confidence 468999999999999999999999999999998755569999999999999999995 8999999999999985 6
Q ss_pred HHHHHHHHHhhhhc
Q 033935 94 IRHLLCVANKLRTL 107 (108)
Q Consensus 94 v~~Il~~A~~l~~~ 107 (108)
++.+++.|..++.+
T Consensus 322 i~~ll~~A~~l~~~ 335 (345)
T 2qfz_A 322 ISLLLAEAYRLKFA 335 (345)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998753
No 3
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=99.79 E-value=9.6e-20 Score=143.76 Aligned_cols=87 Identities=31% Similarity=0.497 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhccccCccchHHHHHHHHcCC-----------------------------------------------
Q 033935 20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDP----------------------------------------------- 52 (108)
Q Consensus 20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~----------------------------------------------- 52 (108)
+.+|++||++++|+|+||+++++||||.+|+++
T Consensus 229 ~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 308 (396)
T 1fkm_A 229 FIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMT 308 (396)
T ss_dssp THHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC----------------------------------------------
T ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccc
Confidence 568999999999999999999999999999966
Q ss_pred ----C---------CCchHHHHHHHHHHHHHHhHhhcCCHHHHHHHHhCCCCC-----CHHHHHHHHHhhhh
Q 033935 53 ----D---------GPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPPI-----SIRHLLCVANKLRT 106 (108)
Q Consensus 53 ----~---------~~~~~~~~i~vaiL~~~r~~Ll~~df~~~l~lLq~~p~~-----dv~~Il~~A~~l~~ 106 (108)
+ ++.+++.|+|+|+|...|++|++.||++++++||++|.. |++.++++|..++.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~ 380 (396)
T 1fkm_A 309 PNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQS 380 (396)
T ss_dssp --------------CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHH
T ss_pred cccccccchhccccchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHH
Confidence 1 224799999999999999999999999999999999974 79999999998764
No 4
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=99.74 E-value=2.5e-18 Score=132.60 Aligned_cols=83 Identities=23% Similarity=0.413 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCCHHHHHHHHhCCCC-CCHHHHH
Q 033935 20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPP-ISIRHLL 98 (108)
Q Consensus 20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~df~~~l~lLq~~p~-~dv~~Il 98 (108)
+..|++||++++|+++||+++++||||.+|+++. ++++++|+|++...|++|++.||++++++||++|+ .|++.++
T Consensus 226 ~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~---~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp~~~d~~~l~ 302 (334)
T 2qq8_A 226 PDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGE---EFLFRTALGILKLFEDILTKMDFIHMAQFLTRLPEDLPAEELF 302 (334)
T ss_dssp GGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCCTTCCHHHHH
T ss_pred ccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCCCcCCHHHHH
Confidence 4689999999999999999999999999999985 89999999999999999999999999999999997 6999999
Q ss_pred HHHHhhh
Q 033935 99 CVANKLR 105 (108)
Q Consensus 99 ~~A~~l~ 105 (108)
+.|.+++
T Consensus 303 ~~a~~l~ 309 (334)
T 2qq8_A 303 ASIATIQ 309 (334)
T ss_dssp HHHHHCC
T ss_pred HHHHHcc
Confidence 9999876
No 5
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=99.72 E-value=8.2e-18 Score=127.36 Aligned_cols=85 Identities=15% Similarity=0.273 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhccccC-ccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcC--CHHHHHHHHhCCC-CCCHH
Q 033935 20 VASRMIGWITLLLTQEFN-FANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAG--DFTSNLKLLQNYP-PISIR 95 (108)
Q Consensus 20 ~~~f~~rW~~lLF~ref~-l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~--df~~~l~lLq~~p-~~dv~ 95 (108)
..+|++||++++|++++| +++++|+||.+++++. .+++|+|+|++...|++|++. |+++++.+++++| +.|++
T Consensus 200 ~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~---~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d~~ 276 (292)
T 4hl4_A 200 GTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHP---LMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYE 276 (292)
T ss_dssp CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCT---THHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCCHH
T ss_pred CcchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCHH
Confidence 357999999999999996 9999999999999985 799999999999999999984 7999999999999 58999
Q ss_pred HHHHHHHhhhhc
Q 033935 96 HLLCVANKLRTL 107 (108)
Q Consensus 96 ~Il~~A~~l~~~ 107 (108)
.++++|..++++
T Consensus 277 ~li~~A~~l~~~ 288 (292)
T 4hl4_A 277 TLISRAGDLFVQ 288 (292)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 6
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=99.66 E-value=2e-17 Score=125.90 Aligned_cols=83 Identities=27% Similarity=0.422 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCCHHHHHHHHh-CCCC-----CC
Q 033935 20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQ-NYPP-----IS 93 (108)
Q Consensus 20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~df~~~l~lLq-~~p~-----~d 93 (108)
+..|++||++++|+++||+++++|+||.+++++. ++++++|+|++...|++|++.||++++++++ ++|. .|
T Consensus 187 ~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~---~~l~~v~lail~~~~~~Ll~~d~~~~l~~l~~~lp~~~~~~~d 263 (310)
T 3hzj_A 187 AHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL---NIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEEN 263 (310)
T ss_dssp GGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT---THHHHHHHHHHHHTHHHHHTCCHHHHHHHHHTHHHHTTCSHHH
T ss_pred hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCccccccccc
Confidence 4589999999999999999999999999999986 7899999999999999999999999999997 4563 38
Q ss_pred HHHHHHHHHhhh
Q 033935 94 IRHLLCVANKLR 105 (108)
Q Consensus 94 v~~Il~~A~~l~ 105 (108)
++.+++.|.+++
T Consensus 264 ~~~ll~~A~~l~ 275 (310)
T 3hzj_A 264 ARRLMEQACNIK 275 (310)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHhcC
Confidence 999999999885
No 7
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=99.66 E-value=5.1e-17 Score=124.46 Aligned_cols=84 Identities=10% Similarity=0.275 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcC-CHHHHHHHHhC-CCCC---CH
Q 033935 20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAG-DFTSNLKLLQN-YPPI---SI 94 (108)
Q Consensus 20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~-df~~~l~lLq~-~p~~---dv 94 (108)
+..|++||++++|+++||+++++|+||.+|+++. ++++++|+|++...|++|++. |+++++++|++ +|+. |+
T Consensus 221 ~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~---~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di 297 (331)
T 3qye_A 221 PSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGT---EVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQM 297 (331)
T ss_dssp GGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCT---THHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHH
T ss_pred hHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHH
Confidence 4679999999999999999999999999999986 699999999999999999985 79999999998 4544 79
Q ss_pred HHHHHHHHhhhh
Q 033935 95 RHLLCVANKLRT 106 (108)
Q Consensus 95 ~~Il~~A~~l~~ 106 (108)
+.++++|.+++-
T Consensus 298 ~~li~~A~~l~~ 309 (331)
T 3qye_A 298 EKTINQVFEMDI 309 (331)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHhCCc
Confidence 999999988763
No 8
>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein, pseudomonas syringae P STR. DC3000, structural genomics, PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1
Probab=63.42 E-value=13 Score=26.13 Aligned_cols=42 Identities=31% Similarity=0.358 Sum_probs=32.1
Q ss_pred HHHHHHHhHhhcCCHHHHHHHHhCCCCCC---HHHHHHHHHhhhh
Q 033935 65 AMLILIRRRLLAGDFTSNLKLLQNYPPIS---IRHLLCVANKLRT 106 (108)
Q Consensus 65 aiL~~~r~~Ll~~df~~~l~lLq~~p~~d---v~~Il~~A~~l~~ 106 (108)
-.+..+|+.|++.+-+.+-.++..+|..| ..++++.|.+=.+
T Consensus 106 h~lE~wRdrLi~~gd~al~e~~~~~P~~DrQ~LRqLiR~A~kE~~ 150 (176)
T 2p0t_A 106 HNLERWRDRLIAGDDADLEKFVIEYPDADRQQLRSLIRQAQHEVA 150 (176)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHCchhhHHHHHHHHHHHHHHHH
Confidence 35788999999876567778889999988 5567777766443
No 9
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=33.59 E-value=27 Score=17.72 Aligned_cols=14 Identities=57% Similarity=1.301 Sum_probs=9.7
Q ss_pred hhhhHHH---HHHHHHH
Q 033935 6 VWVCEVV---KVWLLAV 19 (108)
Q Consensus 6 ~~~~~~~---~~~~~~~ 19 (108)
=|||.|. |.|+-|-
T Consensus 10 dWvctvLsDfktWlkak 26 (31)
T 1r7c_A 10 DWICEVLSDFKTWLKAK 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 3889885 6777653
No 10
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=27.31 E-value=97 Score=20.19 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=26.0
Q ss_pred HHHHHHHHHhHhhc-CCHHHHHHHHhCCCCCCHHHHHHHH
Q 033935 63 CCAMLILIRRRLLA-GDFTSNLKLLQNYPPISIRHLLCVA 101 (108)
Q Consensus 63 ~vaiL~~~r~~Ll~-~df~~~l~lLq~~p~~dv~~Il~~A 101 (108)
|++++... .|++ ++|.+.+.+++..+..|++..+..|
T Consensus 41 ~v~lIR~s--SLmNrG~Yq~Al~l~~~~c~pdlepw~ALc 78 (116)
T 2p58_C 41 AVQLIRLS--SLMNRGDYASALQQGNKLAYPDLEPWLALC 78 (116)
T ss_dssp HHHHHHHH--HHHHTTCHHHHHHHHTTSCCGGGHHHHHHH
T ss_pred HHHHHHHH--HHHcchhHHHHHHhcCCCCCchHHHHHHHH
Confidence 34444432 3665 7899999999999877877776544
No 11
>2kvs_A Uncharacterized protein MW0776; PSI-2, NESG, BIG target, structural genomics, protein structure initiative; NMR {Staphylococcus aureus}
Probab=26.23 E-value=32 Score=21.19 Aligned_cols=32 Identities=6% Similarity=-0.191 Sum_probs=24.3
Q ss_pred cCCHHHHHHHHhCCC-CCCHHHHHHHHHhhhhc
Q 033935 76 AGDFTSNLKLLQNYP-PISIRHLLCVANKLRTL 107 (108)
Q Consensus 76 ~~df~~~l~lLq~~p-~~dv~~Il~~A~~l~~~ 107 (108)
+.||+++.+-|..-+ +-+.-+++++|.+++++
T Consensus 39 ~~d~~eIs~Yle~~~~~~~~~e~vkralsly~~ 71 (80)
T 2kvs_A 39 EERHQVIRAYVMSNYTDHQLIETTNRAISLYMA 71 (80)
T ss_dssp CSSSHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 367899988886644 23567889999999875
No 12
>3vjz_A DMP19, putative uncharacterized protein; helix bundle, DNA mimic, gene regulation; 1.80A {Neisseria meningitidis}
Probab=22.60 E-value=76 Score=22.02 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=26.4
Q ss_pred HHHhHhhcCCHHHHH--------------HHHhCCCCCCHHHHHHHHHhhhhc
Q 033935 69 LIRRRLLAGDFTSNL--------------KLLQNYPPISIRHLLCVANKLRTL 107 (108)
Q Consensus 69 ~~r~~Ll~~df~~~l--------------~lLq~~p~~dv~~Il~~A~~l~~~ 107 (108)
.++++.+++.|.+.+ +-|++.--.+..+++++|.+++++
T Consensus 54 ~L~~EV~~GGFvQLI~NGyG~~if~Np~akalr~wG~~~l~kli~kA~klY~~ 106 (166)
T 3vjz_A 54 YLDSQVEEGGFVQLIASGYGEYIFRNPLADSLRRWKIKAVPKVLDKAKALYEQ 106 (166)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHTSSHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHhhhhcCchhHHHhChHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 345566666565543 344555556899999999999864
No 13
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=21.42 E-value=95 Score=20.22 Aligned_cols=37 Identities=11% Similarity=0.273 Sum_probs=25.9
Q ss_pred HHHHHHHHHhHhhc-CCHHHHHHHHhCCCCCCHHHHHHHH
Q 033935 63 CCAMLILIRRRLLA-GDFTSNLKLLQNYPPISIRHLLCVA 101 (108)
Q Consensus 63 ~vaiL~~~r~~Ll~-~df~~~l~lLq~~p~~dv~~Il~~A 101 (108)
|++++... .|++ ++|.+.+.+++..+..|++..+..|
T Consensus 40 ~v~lIR~s--SLmNrG~Yq~Al~l~~~~c~pdlepw~ALc 77 (115)
T 2uwj_G 40 AARLIRIS--SLANQGRYQEALAFAHGNPWPALEPWFALC 77 (115)
T ss_dssp HHHHHHHH--HHHHTTCHHHHHGGGTTCCCGGGHHHHHHH
T ss_pred HHHHHHHH--HHHcchhHHHHHHhcCCCCCchHHHHHHHH
Confidence 34444432 3665 7899999999999877877766544
No 14
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=20.71 E-value=1.1e+02 Score=18.08 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=28.0
Q ss_pred HHHHHHHHHhHhhcC--CHHHHHHHHhCCC--CCCHHHHHHHHHhhh
Q 033935 63 CCAMLILIRRRLLAG--DFTSNLKLLQNYP--PISIRHLLCVANKLR 105 (108)
Q Consensus 63 ~vaiL~~~r~~Ll~~--df~~~l~lLq~~p--~~dv~~Il~~A~~l~ 105 (108)
|.+-+..+|.+.... -+.+-+++++.+. ..|...++++...|-
T Consensus 7 A~~yl~~VK~~F~~~p~~Y~~FL~im~~~k~~~~~~~~v~~rv~~Lf 53 (77)
T 2czy_A 7 ALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLF 53 (77)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 566777788777652 2566666666654 368888877766553
No 15
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.41 E-value=1.4e+02 Score=18.21 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=41.8
Q ss_pred HHHHHHHcCCC----CCchHHHHHHHHHHHHHHhHhhcCCHHHHHHHHhCCCC----CCHHHHHHHHHhhh
Q 033935 43 HIWDTLLSDPD----GPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPP----ISIRHLLCVANKLR 105 (108)
Q Consensus 43 ~IWD~~f~~~~----~~~~~~~~i~vaiL~~~r~~Ll~~df~~~l~lLq~~p~----~dv~~Il~~A~~l~ 105 (108)
.+|+.++...+ .+.+-++-+++|+....+...-..-+......|+++|+ +|+..+...+....
T Consensus 22 EvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~a~~ll~~a~~~L~~~~~~~~gidv~~L~~~~~~~l 92 (94)
T 2cwy_A 22 EVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRPGLRNLRKAEARLEGLPCPLMGLDWRSLLQEARRRL 92 (94)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCSSBTTBCHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhCCCccCCcCHHHHHHHHHHHh
Confidence 34555555432 12334666888888877766521336788899999985 59999998877654
No 16
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.11 E-value=40 Score=20.24 Aligned_cols=7 Identities=57% Similarity=1.170 Sum_probs=5.9
Q ss_pred HHHHHHH
Q 033935 10 EVVKVWL 16 (108)
Q Consensus 10 ~~~~~~~ 16 (108)
+|||||.
T Consensus 47 ~VVrVWF 53 (71)
T 2da7_A 47 EFVKEWF 53 (71)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7899995
Done!