BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033936
MNSTSPANSSISTTPLVGGGSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLN
KEVKSLDEDNWMFEGPRSHIHLISTAGGFLNKQLETSKSRNLAPSKFL

High Scoring Gene Products

Symbol, full name Information P value
SAMBA
AT1G32310 		protein from Arabidopsis thaliana 2.8e-27

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033936
        (108 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2028296 - symbol:SAMBA "AT1G32310" species:370...   306  2.8e-27   1


>TAIR|locus:2028296 [details] [associations]
            symbol:SAMBA "AT1G32310" species:3702 "Arabidopsis
            thaliana" [GO:0005515 "protein binding" evidence=IPI] [GO:0007276
            "gamete generation" evidence=RCA] [GO:0032875 "regulation of DNA
            endoreduplication" evidence=RCA] [GO:0051302 "regulation of cell
            division" evidence=RCA] [GO:0051510 "regulation of unidimensional
            cell growth" evidence=RCA] [GO:0009555 "pollen development"
            evidence=IMP] [GO:0009556 "microsporogenesis" evidence=IMP]
            [GO:0010997 "anaphase-promoting complex binding" evidence=IDA]
            [GO:0045732 "positive regulation of protein catabolic process"
            evidence=IMP] [GO:0046621 "negative regulation of organ growth"
            evidence=IMP] EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0045732
            GO:GO:0046621 EMBL:AC084110 GO:GO:0009556 GO:GO:0010997
            EMBL:AY086534 EMBL:BT004179 EMBL:BT005704 IPI:IPI00537372
            RefSeq:NP_564394.1 UniGene:At.40166 IntAct:Q9C613 STRING:Q9C613
            EnsemblPlants:AT1G32310.1 GeneID:840123 KEGG:ath:AT1G32310
            TAIR:At1g32310 eggNOG:NOG255836 HOGENOM:HOG000077652
            InParanoid:Q9C613 OMA:DRKEEAM ProtClustDB:CLSN2688192
            Genevestigator:Q9C613 Uniprot:Q9C613
        Length = 100

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 59/93 (63%), Positives = 73/93 (78%)

Query:     1 MNSTSPANSSISTTPLVGGGSSSNNTA-TDEFHFPSDLISIQDRKDEALQVLRSDLMATL 59
             MN  SPA+S +STT + GGG SS   A  D+FHFP D+ S+Q+RKDEA++VL++DLM  L
Sbjct:     1 MNGASPAHSLVSTTAVAGGGGSSGAAAGLDDFHFPPDIPSMQERKDEAMRVLKADLMTEL 60

Query:    60 NKEVKSLDEDNWMFEGPRSHIHLISTAGGFLNK 92
             +KEVKSL+ED+WMFEGPRS IHLIS  G FL K
Sbjct:    61 DKEVKSLEEDSWMFEGPRSRIHLISRRGNFLKK 93


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.125   0.346    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      108       108   0.00091  102 3  11 23  0.37    31
                                                     29  0.40    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  512 (54 KB)
  Total size of DFA:  104 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.05u 0.13s 13.18t   Elapsed:  00:00:01
  Total cpu time:  13.05u 0.13s 13.18t   Elapsed:  00:00:01
  Start:  Fri May 10 08:55:22 2013   End:  Fri May 10 08:55:23 2013

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