BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033936
         (108 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9Z2Z9|GFPT2_MOUSE Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2
           OS=Mus musculus GN=Gfpt2 PE=2 SV=3
          Length = 682

 Score = 29.6 bits (65), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 36  DLISIQDRKDEALQVLRSDLMATLNKEVKSLDE 68
           D IS+Q+R+ E ++ LRS  +  L KEV SLDE
Sbjct: 496 DRISLQNRRQEIIRGLRS--LPELIKEVLSLDE 526


>sp|Q9LT48|PP244_ARATH Pentatricopeptide repeat-containing protein At3g20730
           OS=Arabidopsis thaliana GN=PCMP-E94 PE=2 SV=1
          Length = 565

 Score = 29.6 bits (65), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 11  ISTTPLVGGGSSSNNTATDEFHFPSDLISIQDRKDEAL 48
           +S T L+ G S  NN  +D F    D+I ++ + DE +
Sbjct: 282 LSCTALITGFSQQNNCTSDAFDIFKDMIRMKTKMDEVV 319


>sp|Q1GUX4|SYE1_SPHAL Glutamate--tRNA ligase 1 OS=Sphingopyxis alaskensis (strain DSM
           13593 / LMG 18877 / RB2256) GN=gltX1 PE=3 SV=1
          Length = 490

 Score = 29.3 bits (64), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%)

Query: 31  FHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFE 74
           F F  D + + ++  E L      L+A + + ++ LD+D+W  E
Sbjct: 384 FLFAPDPMPVDEKAAEVLASAPEGLLAAMTQRLRGLDDDHWTSE 427


>sp|Q9ZV25|P2C23_ARATH Probable protein phosphatase 2C 23 OS=Arabidopsis thaliana GN=PLL4
           PE=2 SV=1
          Length = 654

 Score = 29.3 bits (64), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 12/92 (13%)

Query: 4   TSPANSSISTTPLVGG-GSSSNNTATDEFH--FPSDL--ISIQDRKDEALQVLRSDLMAT 58
           + P      + PL G  G     T +D+F   F   L  + +  RK   ++VLR  +  T
Sbjct: 131 SGPIERGFMSGPLDGSSGPIDGKTGSDQFQRSFSHGLANLRVGSRKGSLVRVLRRAISKT 190

Query: 59  LNK-------EVKSLDEDNWMFEGPRSHIHLI 83
           + +        +K + E +W+F   ++ IH I
Sbjct: 191 ITRGQNSIVAPIKPVKEPDWVFGSDKTRIHQI 222


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.125    0.346 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,965,085
Number of Sequences: 539616
Number of extensions: 1319354
Number of successful extensions: 3738
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3729
Number of HSP's gapped (non-prelim): 26
length of query: 108
length of database: 191,569,459
effective HSP length: 76
effective length of query: 32
effective length of database: 150,558,643
effective search space: 4817876576
effective search space used: 4817876576
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)