Query 033936
Match_columns 108
No_of_seqs 20 out of 22
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 13:18:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033936.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033936hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ju4_A GMP-PDE gamma, retinal 64.3 2.2 7.6E-05 29.5 1.0 20 1-20 1-20 (87)
2 1mww_A Hypothetical protein HI 62.3 7.1 0.00024 25.3 3.1 44 44-87 11-69 (128)
3 3v86_A De novo design helix; c 44.4 19 0.00064 20.2 2.5 21 44-66 6-26 (27)
4 1use_A VAsp, vasodilator-stimu 43.6 24 0.00081 21.7 3.1 16 48-63 9-24 (45)
5 2aal_A Malonate semialdehyde d 43.4 21 0.00072 23.2 3.1 44 43-87 16-75 (131)
6 4dzn_A Coiled-coil peptide CC- 40.3 18 0.00062 21.1 2.1 18 48-66 4-21 (33)
7 3n1s_A HIT-like protein HINT; 39.7 74 0.0025 20.4 6.4 37 48-86 62-108 (119)
8 3eh0_A UDP-3-O-[3-hydroxymyris 38.3 46 0.0016 25.0 4.6 56 8-67 276-341 (341)
9 1fit_A FragIle histidine prote 37.8 60 0.002 21.3 4.7 20 76-95 93-112 (147)
10 3piv_A Interferon; zebrafish, 37.5 26 0.0009 25.2 3.1 23 29-53 31-57 (164)
11 1zxa_A CGMP-dependent protein 37.1 41 0.0014 21.7 3.7 31 36-66 15-51 (67)
12 3se4_B Interferon omega-1; typ 37.0 35 0.0012 24.8 3.7 26 29-54 39-65 (177)
13 1otf_A 4-oxalocrotonate tautom 34.7 29 0.00098 19.1 2.3 33 43-75 11-54 (62)
14 3r84_A Mediator of RNA polymer 34.3 14 0.00048 24.9 1.1 19 51-69 55-73 (86)
15 3s9d_A Interferon alpha-2; hum 34.0 18 0.00061 26.2 1.7 25 29-53 37-61 (168)
16 3oq3_A IFN-alpha-5, interferon 33.2 45 0.0015 24.0 3.7 25 29-53 34-59 (166)
17 3abf_A 4-oxalocrotonate tautom 33.0 31 0.0011 19.1 2.3 33 43-75 12-55 (64)
18 1wu3_I Interferon beta, IFN-be 32.4 36 0.0012 24.5 3.1 25 29-54 34-58 (161)
19 1gk7_A Vimentin; intermediate 30.6 20 0.00068 20.8 1.2 30 45-75 5-34 (39)
20 3unf_H Proteasome subunit beta 30.4 91 0.0031 22.5 5.0 84 9-107 118-202 (234)
21 2opa_A Probable tautomerase YW 29.4 41 0.0014 18.4 2.4 33 43-75 11-54 (61)
22 1ryp_I 20S proteasome; multica 29.2 64 0.0022 22.7 3.9 84 9-107 118-203 (222)
23 3m20_A 4-oxalocrotonate tautom 28.0 29 0.00098 19.9 1.6 34 42-75 13-53 (62)
24 3h36_A Polyribonucleotide nucl 27.4 60 0.002 20.2 3.2 20 43-62 36-55 (93)
25 2rg4_A Uncharacterized protein 27.3 69 0.0023 23.0 3.8 49 41-92 66-118 (216)
26 4egu_A Histidine triad (HIT) p 26.8 1E+02 0.0034 19.4 4.2 12 75-86 98-109 (119)
27 1b5l_A Interferon TAU; cytokin 25.9 44 0.0015 24.3 2.6 25 29-53 34-59 (172)
28 3piw_A Type I interferon 2; ze 25.7 61 0.0021 23.3 3.3 28 29-56 36-65 (161)
29 3ry0_A Putative tautomerase; o 24.9 73 0.0025 18.1 3.0 33 43-75 11-54 (65)
30 2kxo_A Cell division topologic 24.0 38 0.0013 22.7 1.8 50 23-77 14-68 (95)
31 1xl3_C Protein type A, secreti 23.7 76 0.0026 21.7 3.3 38 32-69 54-91 (92)
32 2eo4_A 150AA long hypothetical 23.4 1.5E+02 0.0051 19.4 4.7 13 76-88 93-105 (149)
33 3p0l_A Steroidogenic acute reg 23.0 68 0.0023 22.0 3.0 20 67-86 29-49 (221)
34 1whu_A Polynucleotide phosphor 22.9 67 0.0023 20.6 2.8 17 43-59 43-59 (104)
35 2r55_A STAR-related lipid tran 22.9 1.2E+02 0.0042 20.7 4.3 44 41-87 18-61 (231)
36 3mb2_A 4-oxalocrotonate tautom 22.7 79 0.0027 18.4 2.9 34 43-76 12-56 (72)
37 2x4k_A 4-oxalocrotonate tautom 22.6 92 0.0031 16.7 3.0 20 43-62 14-33 (63)
38 4gwp_A Mediator of RNA polymer 22.5 30 0.001 24.7 1.1 17 52-68 59-75 (115)
39 3m21_A Probable tautomerase HP 21.4 1.1E+02 0.0037 17.5 3.3 12 64-75 46-57 (67)
40 1uvq_C Orexin; immunology, MHC 21.3 37 0.0013 19.8 1.1 17 6-22 8-24 (33)
41 4b8u_A 3-hydroxydecanoyl-[acyl 20.7 39 0.0013 24.5 1.5 50 27-76 65-116 (171)
42 1zv1_A Doublesex protein; UBA 20.3 8.8 0.0003 25.4 -1.9 12 28-39 17-28 (65)
No 1
>2ju4_A GMP-PDE gamma, retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit gamma...; intrinsic disordered protein; HET: RCY; NMR {Bos taurus}
Probab=64.32 E-value=2.2 Score=29.54 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=17.0
Q ss_pred CCCCCCCCcceeccceecCC
Q 033936 1 MNSTSPANSSISTTPLVGGG 20 (108)
Q Consensus 1 mnssSPA~S~VSttav~gGG 20 (108)
||+++|+.|..+++.+.+|-
T Consensus 1 Mn~~~p~~~~~~~~~~~~gP 20 (87)
T 2ju4_A 1 MNLEPPKAECRSATRVMGGP 20 (87)
T ss_dssp CCSSCCCCCCTTCSSSSCSS
T ss_pred CCCCCCCcccccCCccCCCC
Confidence 99999999999988776663
No 2
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=62.25 E-value=7.1 Score=25.28 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHH-----------hcccccCCcccccccc----eeEEeecCC
Q 033936 44 KDEALQVLRSDLMATLNKE-----------VKSLDEDNWMFEGPRS----HIHLISTAG 87 (108)
Q Consensus 44 KDeam~~Lk~dlma~L~ke-----------VksLdeDnWmFe~prS----rI~LiSr~g 87 (108)
-+|--..|..+|-++|-+- +-..++++|.|.|+|+ .|++.+.+|
T Consensus 11 s~e~~~~l~~~i~~al~~~lg~p~~~~~v~i~~~~~~~~~~gg~~~~~~~~i~i~~~~g 69 (128)
T 1mww_A 11 LAPRREKLAEVIYNSLHLGLDIPKGKHAIRFLCLEKEDFYYPFDRSDDYTVIEINLMAG 69 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCTTSSCEEEEEECGGGEECCTTSCTTCEEEEEEEETT
T ss_pred CHHHHHHHHHHHHHHHHHHHCcChHHEEEEEEEeChHHeecCCCCCCCcEEEEEEECCC
Confidence 3444444555555444443 3345678999999676 577766554
No 3
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=44.44 E-value=19 Score=20.21 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhccc
Q 033936 44 KDEALQVLRSDLMATLNKEVKSL 66 (108)
Q Consensus 44 KDeam~~Lk~dlma~L~keVksL 66 (108)
|||+ -+||-+|+ +|..|||.|
T Consensus 6 kdev-gelkgevr-alkdevkdl 26 (27)
T 3v86_A 6 KDEV-GELKGEVR-ALKDEVKDL 26 (27)
T ss_dssp HHHH-HHHHHHHH-HHHHHHHHH
T ss_pred hHHH-HHHHhHHH-HHHHHHhcc
Confidence 5654 46777776 477888876
No 4
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=43.57 E-value=24 Score=21.72 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 033936 48 LQVLRSDLMATLNKEV 63 (108)
Q Consensus 48 m~~Lk~dlma~L~keV 63 (108)
|..+|.||++.+|+|+
T Consensus 9 le~~KqEIL~E~RkEl 24 (45)
T 1use_A 9 LQRVKQELLEEVKKEL 24 (45)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 5
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=43.45 E-value=21 Score=23.17 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc-------ccccCCccccc-----ccc----eeEEeecCC
Q 033936 43 RKDEALQVLRSDLMATLNKEVK-------SLDEDNWMFEG-----PRS----HIHLISTAG 87 (108)
Q Consensus 43 RKDeam~~Lk~dlma~L~keVk-------sLdeDnWmFe~-----prS----rI~LiSr~g 87 (108)
.|.+.+..+-..+.+.|.+--. ..++++|.|.+ +|+ .|++. ..|
T Consensus 16 ~k~~l~~~i~~al~~~~g~p~~~~~v~i~~~~~~~~~~~g~~l~~~~~~~~~~I~i~-~~g 75 (131)
T 2aal_A 16 QIKSLLDAAHGAMVDAFGVPANDRYQTVSQHRPGEMVLEDTGLGYGRSSAVVLLTVI-SRP 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECTTSEEECCTTSCCCCCTTCEEEEEE-ESC
T ss_pred HHHHHHHHHHHHHHHHhCcChhHEEEEEEEECHHHcccCCccCCcCCCCCeEEEEEE-eCC
Confidence 4555555555555555544333 67889999998 566 67777 444
No 6
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=40.32 E-value=18 Score=21.05 Aligned_cols=18 Identities=33% Similarity=0.695 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 033936 48 LQVLRSDLMATLNKEVKSL 66 (108)
Q Consensus 48 m~~Lk~dlma~L~keVksL 66 (108)
+..||.++ ++|.||+++|
T Consensus 4 iaalkqei-aalkkeiaal 21 (33)
T 4dzn_A 4 IAALKQEI-AALKKEIAAL 21 (33)
T ss_dssp HHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHH
Confidence 34555554 5566666655
No 7
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=39.66 E-value=74 Score=20.43 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhcccccCCccc----------ccccceeEEeecC
Q 033936 48 LQVLRSDLMATLNKEVKSLDEDNWMF----------EGPRSHIHLISTA 86 (108)
Q Consensus 48 m~~Lk~dlma~L~keVksLdeDnWmF----------e~prSrI~LiSr~ 86 (108)
+..|...+...+++. .+..|...+ +-++-|+|+|.|+
T Consensus 62 l~~l~~~~~~v~~~~--~~~~~g~ni~~n~g~~agq~V~HlH~Hiipr~ 108 (119)
T 3n1s_A 62 LGRMITVAAKIAEQE--GIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGR 108 (119)
T ss_dssp HHHHHHHHHHHHHHT--TCTTTCEEEEEEEHHHHTCCSSSCCEEEEESS
T ss_pred HHHHHHHHHHHHHHh--CCCCCCeEEEEeCCCCcCCCcCEEEEEEeCCc
Confidence 334444444444432 455665544 3468899999887
No 8
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}
Probab=38.33 E-value=46 Score=24.98 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=27.2
Q ss_pred CcceeccceecCCCcccccccccCC--------CCCCcchhhhhhHHHHHHHHH--HHHHHHHHHhcccc
Q 033936 8 NSSISTTPLVGGGSSSNNTATDEFH--------FPSDLISIQDRKDEALQVLRS--DLMATLNKEVKSLD 67 (108)
Q Consensus 8 ~S~VSttav~gGG~s~~~~~~ddfh--------fp~D~is~~~RKDeam~~Lk~--dlma~L~keVksLd 67 (108)
+..|..-++++||+... .|++ +|+-.+....|-...+..|.+ +-...|+|+++.||
T Consensus 276 ~v~Ig~~~vv~a~s~V~----~~v~~~~~~~~G~Pa~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~ 341 (341)
T 3eh0_A 276 HMEICDKVTVTGMGMVM----RPITEPGVYSSGIPLQPNKVWRKTAALVMNIDDMSKRLKSLERKVNQQD 341 (341)
T ss_dssp SEEECSSEEECTTCEEC----SCBCSCEEEECCCCCEEHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCC
T ss_pred CCEECCCCEEeeCCEEC----CCcCCCCeEEEecCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcC
Confidence 33444556666664322 3332 466666544443333333322 22345677777664
No 9
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=37.77 E-value=60 Score=21.34 Aligned_cols=20 Identities=15% Similarity=0.399 Sum_probs=11.7
Q ss_pred ccceeEEeecCCCCCccccc
Q 033936 76 PRSHIHLISTAGGFLNKQLE 95 (108)
Q Consensus 76 prSrI~LiSr~g~~l~kq~e 95 (108)
++=|||+|.|..|-.++..+
T Consensus 93 ~HlH~HiiPr~~~d~~~~~~ 112 (147)
T 1fit_A 93 KHVHVHVLPRKAGDFHRNDS 112 (147)
T ss_dssp SSCCEEEEEECTTC------
T ss_pred cEEEEEEECCcCCCCCCcch
Confidence 67899999998655444433
No 10
>3piv_A Interferon; zebrafish, cytokine; 2.09A {Danio rerio}
Probab=37.45 E-value=26 Score=25.23 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=16.8
Q ss_pred ccCCCCCCcc---hh-hhhhHHHHHHHHH
Q 033936 29 DEFHFPSDLI---SI-QDRKDEALQVLRS 53 (108)
Q Consensus 29 ddfhfp~D~i---s~-~~RKDeam~~Lk~ 53 (108)
.||.||.++. +. |. |+.| .++.+
T Consensus 31 ~dF~fP~e~~~~~~~~q~-k~qa-~v~~e 57 (164)
T 3piv_A 31 LETPFPSRLYTLMDKSKV-EDQV-KFLVL 57 (164)
T ss_dssp CCSCCCHHHHHHHHTSCH-HHHH-HHHHH
T ss_pred CCCCCcHHHHcccccchH-HHHH-HHHHH
Confidence 7999999998 33 45 7777 55554
No 11
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=37.13 E-value=41 Score=21.72 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=22.9
Q ss_pred CcchhhhhhHHHHHHH------HHHHHHHHHHHhccc
Q 033936 36 DLISIQDRKDEALQVL------RSDLMATLNKEVKSL 66 (108)
Q Consensus 36 D~is~~~RKDeam~~L------k~dlma~L~keVksL 66 (108)
+++.++..|||-|.+| |.+..+.|+.+..-+
T Consensus 15 ~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 15 DFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999998 667777787765433
No 12
>3se4_B Interferon omega-1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens}
Probab=37.01 E-value=35 Score=24.85 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=17.9
Q ss_pred ccCCCCCCcch-hhhhhHHHHHHHHHH
Q 033936 29 DEFHFPSDLIS-IQDRKDEALQVLRSD 54 (108)
Q Consensus 29 ddfhfp~D~is-~~~RKDeam~~Lk~d 54 (108)
.||.||.++.+ .|..|.+|..++.+-
T Consensus 39 ~dF~fP~e~~~~~q~qk~qa~~~l~em 65 (177)
T 3se4_B 39 RDFRFPQEMVKGSQLQKAHVMSVLHEM 65 (177)
T ss_dssp CCCCCCTTCC-----CHHHHHHHHHHH
T ss_pred CCCCCCHHHcccccccHHHHHHHHHHH
Confidence 48999999986 456898888876653
No 13
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=34.67 E-value=29 Score=19.09 Aligned_cols=33 Identities=15% Similarity=0.355 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHh-----------cccccCCccccc
Q 033936 43 RKDEALQVLRSDLMATLNKEV-----------KSLDEDNWMFEG 75 (108)
Q Consensus 43 RKDeam~~Lk~dlma~L~keV-----------ksLdeDnWmFe~ 75 (108)
|-+|.-+.|-.+|.++|.+.. ...+.++|.|.|
T Consensus 11 rs~e~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e~~~~~w~~~G 54 (62)
T 1otf_A 11 RTDEQKETLIRQVSEAMANSLDAPLERVRVLITEMPKNHFGIGG 54 (62)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGGEEETT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCHHHeEECC
Confidence 445555566666666666543 345566676655
No 14
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=34.27 E-value=14 Score=24.89 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhcccccC
Q 033936 51 LRSDLMATLNKEVKSLDED 69 (108)
Q Consensus 51 Lk~dlma~L~keVksLdeD 69 (108)
-.+.+--.|+|||+.|||.
T Consensus 55 tL~~v~v~LrkEIk~LdEn 73 (86)
T 3r84_A 55 RLDKSTTQLRKEIQLLDEN 73 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3447778899999999984
No 15
>3s9d_A Interferon alpha-2; human, type I interferons, IFNA2, ifnar2, SUB-complex of the interferon signaling complex; 2.00A {Homo sapiens} PDB: 3se3_B* 2lms_A* 1itf_A 2hym_B 2ksx_A 2kz1_A 2lag_A 1rh2_A 3ux9_A
Probab=33.97 E-value=18 Score=26.20 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=14.0
Q ss_pred ccCCCCCCcchhhhhhHHHHHHHHH
Q 033936 29 DEFHFPSDLISIQDRKDEALQVLRS 53 (108)
Q Consensus 29 ddfhfp~D~is~~~RKDeam~~Lk~ 53 (108)
.||.||.++...|..|++|..++.+
T Consensus 37 ~dF~fP~e~~~~q~qk~qa~~~l~e 61 (168)
T 3s9d_A 37 HDFGFPQEEFGNQFQKAETIPVLAA 61 (168)
T ss_dssp CCCCCCGGGC-------CCHHHHHH
T ss_pred CCCCCCHHHHhhhhhHHHHHHHHHH
Confidence 4899999998556788877766554
No 16
>3oq3_A IFN-alpha-5, interferon alpha-5; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Mus musculus} SCOP: a.26.1.3
Probab=33.19 E-value=45 Score=24.04 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=19.3
Q ss_pred ccCCCCCCcchh-hhhhHHHHHHHHH
Q 033936 29 DEFHFPSDLISI-QDRKDEALQVLRS 53 (108)
Q Consensus 29 ddfhfp~D~is~-~~RKDeam~~Lk~ 53 (108)
.||.||.++.+. |..|..|..++.+
T Consensus 34 ~dF~fP~e~~~~~q~qk~qa~~~~~e 59 (166)
T 3oq3_A 34 KDFGFPQEKVGAQQIQEAQAIPVLSE 59 (166)
T ss_dssp CCCCCCSTTSCTTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHcccccccHHHHHHHHHH
Confidence 489999999864 5578888876655
No 17
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=32.95 E-value=31 Score=19.11 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH-----------hcccccCCccccc
Q 033936 43 RKDEALQVLRSDLMATLNKE-----------VKSLDEDNWMFEG 75 (108)
Q Consensus 43 RKDeam~~Lk~dlma~L~ke-----------VksLdeDnWmFe~ 75 (108)
|-+|.-..|..+|.+.|.+. +...+.++|-|.|
T Consensus 12 ~s~eqk~~l~~~lt~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG 55 (64)
T 3abf_A 12 RPPEKKRELVRRLTEMASRLLGEPYEEVRVILYEVRRDQWAAGG 55 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECGGGEEETT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECC
Confidence 44455555666666666653 2344556677765
No 18
>1wu3_I Interferon beta, IFN-beta; alpha-helix-bundle, cytokine; 2.15A {Mus musculus} SCOP: a.26.1.3 PDB: 1ifa_A
Probab=32.39 E-value=36 Score=24.47 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=20.1
Q ss_pred ccCCCCCCcchhhhhhHHHHHHHHHH
Q 033936 29 DEFHFPSDLISIQDRKDEALQVLRSD 54 (108)
Q Consensus 29 ddfhfp~D~is~~~RKDeam~~Lk~d 54 (108)
-||.||..+ -.|..|..|..++-+-
T Consensus 34 ~df~fP~e~-~~q~qk~~a~~~~~em 58 (161)
T 1wu3_I 34 ADFKIPMEM-TEKMQKSYTAFAIQEM 58 (161)
T ss_dssp CCCCCCGGG-GSCCCHHHHHHHHHHH
T ss_pred ccCCCCHHH-HhHhHHHHHHHHHHHH
Confidence 479999999 8888898887766553
No 19
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=30.56 E-value=20 Score=20.78 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCCccccc
Q 033936 45 DEALQVLRSDLMATLNKEVKSLDEDNWMFEG 75 (108)
Q Consensus 45 Deam~~Lk~dlma~L~keVksLdeDnWmFe~ 75 (108)
.|.|+.|-.-+-.-| .+|++|+..|++.|.
T Consensus 5 Ke~mq~LNdrlAsyi-dkVR~LE~~N~~Le~ 34 (39)
T 1gk7_A 5 KVELQELNDRFANYI-DKVRFLEQQNKILLA 34 (39)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 456888866665445 569999999888764
No 20
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=30.41 E-value=91 Score=22.52 Aligned_cols=84 Identities=15% Similarity=0.235 Sum_probs=48.9
Q ss_pred cceeccceecC-CCcccccccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHhcccccCCcccccccceeEEeecCC
Q 033936 9 SSISTTPLVGG-GSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAG 87 (108)
Q Consensus 9 S~VSttav~gG-G~s~~~~~~ddfhfp~D~is~~~RKDeam~~Lk~dlma~L~keVksLdeDnWmFe~prSrI~LiSr~g 87 (108)
+....-+++.| |+..+...+|.. |-.|+ -.|||+...+..+.+++...+- .+..=.|.+|.+-|
T Consensus 118 ~~~~~~~~aiGsgs~~a~~~Le~~-~~~~m-----s~eeA~~la~~al~~~~~~D~~---------sg~~iev~vi~~dg 182 (234)
T 3unf_H 118 SYSRLPFTALGSGQGAAVALLEDR-FQPNM-----TLEAAQELLVEAITAGILSDLG---------SGGNVDACVITAGG 182 (234)
T ss_dssp CEEECSEEEEETTHHHHHHHHHHH-CCSSC-----CHHHHHHHHHHHHHHHHHHBTT---------CCSCEEEEEEESSC
T ss_pred CEEeccEEEEcCCchhhHHHHHhc-cCCCC-----CHHHHHHHHHHHHHHHHhhcCC---------CCCcEEEEEEECCC
Confidence 33333334444 433444455554 22232 2478888888878777755432 23444677777777
Q ss_pred CCCcccccccccCCCCCCCC
Q 033936 88 GFLNKQLETSKSRNLAPSKF 107 (108)
Q Consensus 88 ~~l~kq~e~sk~~nl~~~k~ 107 (108)
=..-.+.++..+|...+..|
T Consensus 183 ~~~l~~~~i~~~~~~~~~~~ 202 (234)
T 3unf_H 183 AKLQRALSTPTEPVQRAGRY 202 (234)
T ss_dssp EEEEEEEECCCCCCCCCCCC
T ss_pred EEEeCceecccccccccccc
Confidence 66677778888887766544
No 21
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=29.42 E-value=41 Score=18.41 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHh-----------cccccCCccccc
Q 033936 43 RKDEALQVLRSDLMATLNKEV-----------KSLDEDNWMFEG 75 (108)
Q Consensus 43 RKDeam~~Lk~dlma~L~keV-----------ksLdeDnWmFe~ 75 (108)
|-+|.-+.|-.+|.+.|.+.. ...+.++|.|.|
T Consensus 11 rs~eqk~~l~~~i~~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG 54 (61)
T 2opa_A 11 RTDEQKRNLVEKVTEAVKETTGASEEKIVVFIEEMRKDHYAVAG 54 (61)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEEcCHHHeeECC
Confidence 444555556666666666542 345566776655
No 22
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=29.24 E-value=64 Score=22.73 Aligned_cols=84 Identities=18% Similarity=0.236 Sum_probs=42.6
Q ss_pred cceeccceecC-CCcccccccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHhcccccCCcccccccceeEEeecCC
Q 033936 9 SSISTTPLVGG-GSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAG 87 (108)
Q Consensus 9 S~VSttav~gG-G~s~~~~~~ddfhfp~D~is~~~RKDeam~~Lk~dlma~L~keVksLdeDnWmFe~prSrI~LiSr~g 87 (108)
+....-+++.| |+..+...+|.. |..|+ -.|||+...+..+..+++....+ +..-.|.+|.+-|
T Consensus 118 ~~~~~~~~aiGsgs~~a~~~Le~~-~~~~m-----s~eeA~~la~~al~~~~~~d~~s---------g~~i~v~vi~~~g 182 (222)
T 1ryp_I 118 STDVGYYLSLGSGSLAAMAVLESH-WKQDL-----TKEEAIKLASDAIQAGIWNDLGS---------GSNVDVCVMEIGK 182 (222)
T ss_dssp CEEECSEEEESTTHHHHHHHHHHH-CCSSC-----CHHHHHHHHHHHHHHHHHHCTTC---------CSCEEEEEEETTS
T ss_pred CEEecCEEEECCCHHHHHHHHHhh-CCCCc-----CHHHHHHHHHHHHHHHHhccccC---------CCcEEEEEEECCC
Confidence 33343344444 333444444443 33343 34788888888887776654322 2333466666544
Q ss_pred -CCCcccccccccCCCCCCCC
Q 033936 88 -GFLNKQLETSKSRNLAPSKF 107 (108)
Q Consensus 88 -~~l~kq~e~sk~~nl~~~k~ 107 (108)
=..-++.+...+|.+.+.+|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ 203 (222)
T 1ryp_I 183 DAEYLRNYLTPNVREEKQKSY 203 (222)
T ss_dssp CEEEEEEEECCCCCCCCSSCC
T ss_pred CEEEEeceecCCcccccccCc
Confidence 22224444555676654433
No 23
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=28.02 E-value=29 Score=19.94 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHH-------hcccccCCccccc
Q 033936 42 DRKDEALQVLRSDLMATLNKE-------VKSLDEDNWMFEG 75 (108)
Q Consensus 42 ~RKDeam~~Lk~dlma~L~ke-------VksLdeDnWmFe~ 75 (108)
+.|.+-+..|-..+.+.|... +...+.+||.|.|
T Consensus 13 eqK~~L~~~it~~~~~~lg~~~~~v~V~i~E~~~~~w~~gG 53 (62)
T 3m20_A 13 GKKREFVERLTSVAAEIYGMDRSAITILIHEPPAENVGVGG 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTSCEEEEECCCGGGEEETT
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeCHHHeEECC
Confidence 334444444444444444333 2345678888876
No 24
>3h36_A Polyribonucleotide nucleotidyltransferase; polyribonucleotide nucleotidyltransfer structural genomics, PSI-2, protein structure initiative; 1.80A {Streptococcus mutans}
Probab=27.42 E-value=60 Score=20.20 Aligned_cols=20 Identities=10% Similarity=0.227 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 033936 43 RKDEALQVLRSDLMATLNKE 62 (108)
Q Consensus 43 RKDeam~~Lk~dlma~L~ke 62 (108)
-+++++..+|.++++.|..+
T Consensus 36 eR~~a~~~ik~~v~~~l~e~ 55 (93)
T 3h36_A 36 ASEIATEAVKEHVTAEYEER 55 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34789999999999999643
No 25
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A
Probab=27.30 E-value=69 Score=22.98 Aligned_cols=49 Identities=16% Similarity=0.111 Sum_probs=30.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcccc--c--CCcccccccceeEEeecCCCCCcc
Q 033936 41 QDRKDEALQVLRSDLMATLNKEVKSLD--E--DNWMFEGPRSHIHLISTAGGFLNK 92 (108)
Q Consensus 41 ~~RKDeam~~Lk~dlma~L~keVksLd--e--DnWmFe~prSrI~LiSr~g~~l~k 92 (108)
+.+++..++.|++.|.+.+.+=++.|. . .+|.+ .++.++ +.++|||..+
T Consensus 66 l~~~~p~~~~L~~~i~~~~~~~~~~l~~~~~~~~~~i--~~~W~~-~~~~G~~~~~ 118 (216)
T 2rg4_A 66 LPWRFPIFADLVKSLDAHVAAFAEDLEFELDGKALRL--EDIWIN-ILPEGGVHGS 118 (216)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTCCCEE--EEEEEE-EECTTCCEEE
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHcCCCCCCCceEE--eeEEEE-EcCCCCcccC
Confidence 457788899999988888887777663 1 22322 133333 3466776543
No 26
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=26.77 E-value=1e+02 Score=19.44 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=10.3
Q ss_pred cccceeEEeecC
Q 033936 75 GPRSHIHLISTA 86 (108)
Q Consensus 75 ~prSrI~LiSr~ 86 (108)
-++-|+|+|.|.
T Consensus 98 v~HlH~Hiip~~ 109 (119)
T 4egu_A 98 VKHLHYHILAGK 109 (119)
T ss_dssp SCSCCEEEEESS
T ss_pred cCEEEEEEeCCc
Confidence 368899999998
No 27
>1b5l_A Interferon TAU; cytokine; 2.10A {Pichia pastoris} SCOP: a.26.1.3
Probab=25.90 E-value=44 Score=24.32 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=18.8
Q ss_pred ccCCCCCCcch-hhhhhHHHHHHHHH
Q 033936 29 DEFHFPSDLIS-IQDRKDEALQVLRS 53 (108)
Q Consensus 29 ddfhfp~D~is-~~~RKDeam~~Lk~ 53 (108)
-||.||.++.+ .|..|+.|..++-+
T Consensus 34 ~dF~fP~e~~~~~q~qk~~a~~v~~e 59 (172)
T 1b5l_A 34 KDFGLPQEMVEGDQLQKDQAFPVLYE 59 (172)
T ss_dssp CCCCCCTHHHHHTCSCHHHHHHHHHH
T ss_pred cCCCCCHHHcccccccHHHHHHHHHH
Confidence 47999999985 46678887776554
No 28
>3piw_A Type I interferon 2; zebrafish, interleukin, cytokine; 1.49A {Danio rerio}
Probab=25.68 E-value=61 Score=23.31 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=20.5
Q ss_pred ccCCCCCCcch-hhhh-hHHHHHHHHHHHH
Q 033936 29 DEFHFPSDLIS-IQDR-KDEALQVLRSDLM 56 (108)
Q Consensus 29 ddfhfp~D~is-~~~R-KDeam~~Lk~dlm 56 (108)
.||.||.++.+ .|.. |+.|..++.+-+.
T Consensus 36 ~dF~fP~e~~~~~q~q~k~~a~~~l~emLq 65 (161)
T 3piw_A 36 VRITFPKYALQSNNSNQKTGVAKAVYKIMD 65 (161)
T ss_dssp CCCCCCGGGGCCSSTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHhccchhhHHHHHHHHHHHHHH
Confidence 48999999865 4566 8888887766443
No 29
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=24.94 E-value=73 Score=18.09 Aligned_cols=33 Identities=21% Similarity=0.455 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHH-----------hcccccCCccccc
Q 033936 43 RKDEALQVLRSDLMATLNKE-----------VKSLDEDNWMFEG 75 (108)
Q Consensus 43 RKDeam~~Lk~dlma~L~ke-----------VksLdeDnWmFe~ 75 (108)
|-+|.-..|-.+|.++|.+. +...+.++|.|.|
T Consensus 11 rs~eqk~~L~~~it~~~~~~lg~p~~~v~V~i~e~~~~~w~~gG 54 (65)
T 3ry0_A 11 RSPQEVAALGEALTAAAHETLGTPVEAVRVIVEETPPERWFVGG 54 (65)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECC
Confidence 34444445555555555443 3445677887766
No 30
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=23.97 E-value=38 Score=22.66 Aligned_cols=50 Identities=30% Similarity=0.419 Sum_probs=35.7
Q ss_pred ccccccccCCCCCCcchhhhhh-----HHHHHHHHHHHHHHHHHHhcccccCCccccccc
Q 033936 23 SNNTATDEFHFPSDLISIQDRK-----DEALQVLRSDLMATLNKEVKSLDEDNWMFEGPR 77 (108)
Q Consensus 23 ~~~~~~ddfhfp~D~is~~~RK-----Deam~~Lk~dlma~L~keVksLdeDnWmFe~pr 77 (108)
++..|=++. -+|=+.||. .+.|..||.||++.+.|-|. .|+|+-.+.-.+
T Consensus 14 Sa~vAKeRL----qlILahdR~~~~~~pd~l~~lk~eIl~VIsKYv~-Id~~~v~V~l~~ 68 (95)
T 2kxo_A 14 TATVARDRL----QIIIAQERAQEGQTPDYLPTLRKALMEVLSKYVN-VSLDNIRISQEK 68 (95)
T ss_dssp CSCCSSEEE----EEEEEEEECSSCCCCCSHHHHHHHHHHHHHHHSC-CCTTSEEEEEEE
T ss_pred cHHHHHHHH----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhee-cchhheEEEEEe
Confidence 444455555 356667776 26789999999999999998 687776654443
No 31
>1xl3_C Protein type A, secretion control protein; YOPN, TYEA, type III secretion, cell invasion; HET: MLY; 2.20A {Yersinia pestis} SCOP: a.243.1.1
Probab=23.66 E-value=76 Score=21.68 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=31.8
Q ss_pred CCCCCcchhhhhhHHHHHHHHHHHHHHHHHHhcccccC
Q 033936 32 HFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDED 69 (108)
Q Consensus 32 hfp~D~is~~~RKDeam~~Lk~dlma~L~keVksLdeD 69 (108)
+||.+.++-.+-+...+++...+|=+++.+|=.-|.+|
T Consensus 54 ~iP~~vf~d~e~R~~lL~a~Q~AlD~aI~~Ede~l~~~ 91 (92)
T 1xl3_C 54 LFPLGVFSDEEQRQNLLQMCQNAIDMAIESEEEELSEL 91 (92)
T ss_dssp TSCGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HCCHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 46899999999999999999999999999986655443
No 32
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=23.37 E-value=1.5e+02 Score=19.40 Aligned_cols=13 Identities=38% Similarity=0.557 Sum_probs=10.9
Q ss_pred ccceeEEeecCCC
Q 033936 76 PRSHIHLISTAGG 88 (108)
Q Consensus 76 prSrI~LiSr~g~ 88 (108)
++=|||+|.|..|
T Consensus 93 ~HlHiHviPr~~~ 105 (149)
T 2eo4_A 93 FHLHVHIIPTWEG 105 (149)
T ss_dssp CSCCEEEEEECSS
T ss_pred CEEEEEEECCcCC
Confidence 6789999999855
No 33
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=22.98 E-value=68 Score=22.05 Aligned_cols=20 Identities=15% Similarity=0.385 Sum_probs=16.9
Q ss_pred ccCCccccc-ccceeEEeecC
Q 033936 67 DEDNWMFEG-PRSHIHLISTA 86 (108)
Q Consensus 67 deDnWmFe~-prSrI~LiSr~ 86 (108)
++++|++.. ....|.+-+|.
T Consensus 29 ~~~gW~~~~~~~~gv~vy~~~ 49 (221)
T 3p0l_A 29 NQEGWKKESQQDNGDKVMSKV 49 (221)
T ss_dssp SCTTCEEEEECTTSCEEEEEE
T ss_pred CCCCCeEeeecCCCcEEEEEE
Confidence 678999995 88888888886
No 34
>1whu_A Polynucleotide phosphorylase; 3'-5' RNA exonuclease; pnpase, alpha-helical domain, structural genomics; NMR {Mus musculus} SCOP: a.4.9.1
Probab=22.88 E-value=67 Score=20.64 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHH
Q 033936 43 RKDEALQVLRSDLMATL 59 (108)
Q Consensus 43 RKDeam~~Lk~dlma~L 59 (108)
-+++|+..||+++++.|
T Consensus 43 eR~~al~~ik~~v~~~l 59 (104)
T 1whu_A 43 SRDEAVNKIRLDTEEHL 59 (104)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45789999999999888
No 35
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=22.86 E-value=1.2e+02 Score=20.73 Aligned_cols=44 Identities=9% Similarity=0.092 Sum_probs=25.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcccccCCcccccccceeEEeecCC
Q 033936 41 QDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAG 87 (108)
Q Consensus 41 ~~RKDeam~~Lk~dlma~L~keVksLdeDnWmFe~prSrI~LiSr~g 87 (108)
..++.+-.+ +-++.++.|.+... +++.|++.....-|.+.+++.
T Consensus 18 ~~~~~~y~~-~a~~~~~~~l~~~~--~~~~W~~~~~~~gv~v~~~~~ 61 (231)
T 2r55_A 18 LYFQSMAAQ-MSEAVAEKMLQYRR--DTAGWKICREGNGVSVSWRPS 61 (231)
T ss_dssp --CHHHHHH-HHHHHHHHHHHHHH--CCSSCEEEECCSSEEEEEEEC
T ss_pred chhHHHHHH-HHHHHHHHHHHHhc--CCCCCEEEEeCCCEEEEEEcc
Confidence 344444333 33334444444432 357899999999999988863
No 36
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=22.66 E-value=79 Score=18.43 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH-----------hcccccCCcccccc
Q 033936 43 RKDEALQVLRSDLMATLNKE-----------VKSLDEDNWMFEGP 76 (108)
Q Consensus 43 RKDeam~~Lk~dlma~L~ke-----------VksLdeDnWmFe~p 76 (108)
|-+|.-..|-.+|.++|.+. +...+.++|-|.|.
T Consensus 12 rs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG~ 56 (72)
T 3mb2_A 12 RSTEQKAELARALSAAAAAAFDVPLAEVRLIIQEVPPTHWTVGGI 56 (72)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGGEEETTE
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCE
Confidence 33444444555555544443 23456688888763
No 37
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=22.59 E-value=92 Score=16.66 Aligned_cols=20 Identities=35% Similarity=0.508 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 033936 43 RKDEALQVLRSDLMATLNKE 62 (108)
Q Consensus 43 RKDeam~~Lk~dlma~L~ke 62 (108)
|-+|.-..|..+|-++|.+.
T Consensus 14 ~s~e~k~~l~~~l~~~l~~~ 33 (63)
T 2x4k_A 14 RSDEQLKNLVSEVTDAVEKT 33 (63)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 34454555666666666554
No 38
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=22.48 E-value=30 Score=24.72 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhccccc
Q 033936 52 RSDLMATLNKEVKSLDE 68 (108)
Q Consensus 52 k~dlma~L~keVksLde 68 (108)
.+++--.||||||-|||
T Consensus 59 Ls~~a~~LRkEIK~lDe 75 (115)
T 4gwp_A 59 LDKSTTQLRKEIQLLDE 75 (115)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34677889999999998
No 39
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=21.41 E-value=1.1e+02 Score=17.52 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=8.0
Q ss_pred cccccCCccccc
Q 033936 64 KSLDEDNWMFEG 75 (108)
Q Consensus 64 ksLdeDnWmFe~ 75 (108)
...+.++|.|.|
T Consensus 46 ~e~~~~~w~~gG 57 (67)
T 3m21_A 46 DEVDSNNYGLGG 57 (67)
T ss_dssp EECCTTTEEETT
T ss_pred EEeCHHHeEECC
Confidence 345667887766
No 40
>1uvq_C Orexin; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens}
Probab=21.27 E-value=37 Score=19.77 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=12.1
Q ss_pred CCCcceeccceecCCCc
Q 033936 6 PANSSISTTPLVGGGSS 22 (108)
Q Consensus 6 PA~S~VSttav~gGG~s 22 (108)
|..+-||=+||.|||+-
T Consensus 8 ~pSTKVsWAaVtgggsl 24 (33)
T 1uvq_C 8 LPSTKVSWAAVGGGGSL 24 (33)
T ss_pred CCccccceEEecCCcee
Confidence 44567888888888743
No 41
>4b8u_A 3-hydroxydecanoyl-[acyl-carrier-protein] dehydrat; lyase, fatty acid biosynthesis, inhibitor, bacterial virulen discovery; HET: IBK; 2.76A {Pseudomonas aeruginosa}
Probab=20.70 E-value=39 Score=24.45 Aligned_cols=50 Identities=16% Similarity=0.011 Sum_probs=27.3
Q ss_pred ccccCCCCCCcchhhhhhHHHHHHHHHHHHHHH--HHHhcccccCCcccccc
Q 033936 27 ATDEFHFPSDLISIQDRKDEALQVLRSDLMATL--NKEVKSLDEDNWMFEGP 76 (108)
Q Consensus 27 ~~ddfhfp~D~is~~~RKDeam~~Lk~dlma~L--~keVksLdeDnWmFe~p 76 (108)
|+=.-|||-|++----===|||.++-.-++... ......|.-|+|+|-++
T Consensus 65 wfF~gHFp~~PVMPGvL~~EamaQ~~~~~l~~~~~~~~~~~~~i~~~kFr~~ 116 (171)
T 4b8u_A 65 WFFACHFEGDPVMPGCLGLDAMWQLVGFYLGWQGNPGRGRALGSGEVKFFGQ 116 (171)
T ss_dssp HHHHHSCTTSCCCCHHHHHHHHHHHHHHHHHHTTCCSEEEEEEESCEEECCC
T ss_pred CeEeccCCCCCCCCccHHHHHHHHHhhhhhccccCCCeeEEeccceeEEEee
Confidence 344458899874222122367877644332211 12345566789999864
No 42
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=20.28 E-value=8.8 Score=25.35 Aligned_cols=12 Identities=25% Similarity=0.811 Sum_probs=9.4
Q ss_pred cccCCCCCCcch
Q 033936 28 TDEFHFPSDLIS 39 (108)
Q Consensus 28 ~ddfhfp~D~is 39 (108)
++.|+|||++.-
T Consensus 17 LEkf~YpWEmMp 28 (65)
T 1zv1_A 17 LEKFRYPWELMP 28 (65)
T ss_dssp HHHTTCCGGGHH
T ss_pred HHHhCCCHHHhH
Confidence 567999999843
Done!