Query 033936
Match_columns 108
No_of_seqs 20 out of 22
Neff 2.0
Searched_HMMs 13730
Date Mon Mar 25 13:18:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033936.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033936hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iru2_ d.153.1.4 (2:) Proteas 44.3 11 0.00083 24.5 3.7 50 44-102 162-211 (217)
2 d1wu3i_ a.26.1.3 (I:) Interfer 43.3 9 0.00066 26.2 3.1 24 29-53 34-57 (161)
3 d1ryph_ d.153.1.4 (H:) Proteas 42.8 6.8 0.0005 25.6 2.3 54 6-65 124-178 (205)
4 d2ux0a1 d.17.4.7 (A:387-521) A 40.8 8.8 0.00064 21.6 2.4 29 44-72 2-30 (135)
5 d1rh2a_ a.26.1.3 (A:) Interfer 39.0 10 0.00074 25.5 2.8 25 29-53 29-53 (154)
6 d1pb6a1 a.4.1.9 (A:14-85) Hypo 37.3 13 0.00097 20.6 2.7 25 44-68 48-72 (72)
7 d1jssa_ d.129.3.2 (A:) Cholest 32.5 6.4 0.00046 24.8 0.8 24 63-86 14-37 (199)
8 d1otfa_ d.80.1.1 (A:) 4-oxaloc 32.0 20 0.0015 19.5 2.9 33 43-75 11-54 (59)
9 d1ev0a_ d.71.1.1 (A:) Cell div 31.9 17 0.0012 21.6 2.7 23 48-71 9-31 (58)
10 d1s0ya_ d.80.1.1 (A:) Trans-3- 30.4 26 0.0019 19.3 3.3 34 43-76 11-55 (62)
11 d1em2a_ d.129.3.2 (A:) Lipid t 29.8 22 0.0016 22.3 3.2 29 54-84 15-43 (214)
12 d2bcgg1 c.3.1.3 (G:5-301) Guan 28.4 4.6 0.00033 23.1 -0.4 34 59-93 255-296 (297)
13 d1v97a4 d.87.2.1 (A:415-528) X 26.8 33 0.0024 20.9 3.6 33 28-60 77-111 (114)
14 d1t56a1 a.4.1.9 (A:22-94) Ethr 26.5 23 0.0017 19.2 2.5 26 44-69 47-72 (73)
15 d1v7ba1 a.4.1.9 (A:1-74) Trans 26.3 33 0.0024 18.7 3.2 26 44-69 48-73 (74)
16 d1mwwa_ d.80.1.4 (A:) Hypothet 25.8 27 0.0019 21.1 2.9 35 41-75 68-113 (120)
17 d3dwya1 a.29.2.1 (A:1084-1197) 25.7 31 0.0023 20.9 3.2 27 50-77 6-32 (114)
18 d1wdka3 c.2.1.6 (A:311-496) Fa 24.4 5.8 0.00043 25.9 -0.5 69 11-83 4-75 (186)
19 d1f0ya2 c.2.1.6 (A:12-203) Sho 24.3 9 0.00066 25.2 0.4 47 13-63 6-55 (192)
20 d2np5a1 a.4.1.9 (A:9-77) Trans 23.8 44 0.0032 17.8 3.4 24 44-67 45-68 (69)
21 d1xl3c1 a.243.1.1 (C:2-92) Tye 23.7 34 0.0025 21.8 3.2 36 32-67 53-88 (91)
22 d1v2ya_ d.15.1.1 (A:) Ubiquiti 21.9 31 0.0023 20.9 2.7 44 43-86 25-96 (105)
23 d1whua_ a.4.9.1 (A:) Polynucle 21.7 20 0.0014 22.2 1.7 20 43-62 43-62 (104)
24 d1mo6a2 d.48.1.1 (A:270-329) R 21.5 41 0.003 19.5 3.0 23 43-65 33-57 (60)
25 d1rxqa_ a.213.1.1 (A:) YfiT {B 21.4 39 0.0028 20.5 3.1 31 42-73 18-48 (174)
26 d2ou6a1 a.213.1.2 (A:2-184) Hy 20.7 51 0.0037 20.4 3.6 33 43-75 30-62 (183)
No 1
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}
Probab=44.33 E-value=11 Score=24.48 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccccCCcccccccceeEEeecCCCCCcccccccccCCC
Q 033936 44 KDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAGGFLNKQLETSKSRNL 102 (108)
Q Consensus 44 KDeam~~Lk~dlma~L~keVksLdeDnWmFe~prSrI~LiSr~g~~l~kq~e~sk~~nl 102 (108)
.|||...++..+.++..+++.+- ..=+|-.|.+-|-....+.++..+|-+
T Consensus 162 ~~ea~~l~~~al~~a~~rd~~sg---------~~i~i~vi~~~G~~~~~~~~~~~~~~~ 211 (217)
T d1iru2_ 162 QTEARDLVERCMRVLYYRDARSY---------NRFQTATVTEKGVEIEGPLSTETNWDI 211 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTCC---------SCEEEEEEETTEEEEEEEECCCCCCGG
T ss_pred HHHHHHHHHHHHHHHHHhcCcCC---------CcEEEEEEeCCCEEEcCCeeccccHHH
Confidence 68999999999999998887762 223588888888777777777777754
No 2
>d1wu3i_ a.26.1.3 (I:) Interferon-beta {Mouse (Mus musculus) [TaxId: 10090]}
Probab=43.35 E-value=9 Score=26.17 Aligned_cols=24 Identities=13% Similarity=0.345 Sum_probs=19.9
Q ss_pred ccCCCCCCcchhhhhhHHHHHHHHH
Q 033936 29 DEFHFPSDLISIQDRKDEALQVLRS 53 (108)
Q Consensus 29 ddfhfp~D~is~~~RKDeam~~Lk~ 53 (108)
.||.||.++.. |.-|++|..++-+
T Consensus 34 ~dF~fP~e~~~-q~Qk~~a~~v~~e 57 (161)
T d1wu3i_ 34 ADFKIPMEMTE-KMQKSYTAFAIQE 57 (161)
T ss_dssp CCCCCCGGGGS-CCCHHHHHHHHHH
T ss_pred CCCCCcHHHHh-hccHHHHHHHHHH
Confidence 69999999876 7779999887655
No 3
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=42.79 E-value=6.8 Score=25.65 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=32.7
Q ss_pred CCCcceeccceecC-CCcccccccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHhcc
Q 033936 6 PANSSISTTPLVGG-GSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKS 65 (108)
Q Consensus 6 PA~S~VSttav~gG-G~s~~~~~~ddfhfp~D~is~~~RKDeam~~Lk~dlma~L~keVks 65 (108)
|.-+....-+++-| |+..+...+|.. |..|+- .|||+..++..|..+++..+.+
T Consensus 124 ~~G~~~~~~~~a~G~g~~~~~~~Le~~-~~~~ms-----~~ea~~l~~~al~~a~~rD~~s 178 (205)
T d1ryph_ 124 LGGSVHKLPYAIAGSGSTFIYGYCDKN-FRENMS-----KEETVDFIKHSLSQAIKWDGSS 178 (205)
T ss_dssp TTSCCEEESEEEESGGGGGGHHHHHHH-CCTTCC-----HHHHHHHHHHHHHHHHHHBTTC
T ss_pred CCCcEEecCeEEeecCcHHHHHHHHhh-hhcccC-----HHHHHHHHHHHHHHHHHhcCcC
Confidence 33344444454444 444555555543 444542 4899999999999888876554
No 4
>d2ux0a1 d.17.4.7 (A:387-521) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.84 E-value=8.8 Score=21.61 Aligned_cols=29 Identities=14% Similarity=0.453 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccccCCcc
Q 033936 44 KDEALQVLRSDLMATLNKEVKSLDEDNWM 72 (108)
Q Consensus 44 KDeam~~Lk~dlma~L~keVksLdeDnWm 72 (108)
+|+.+.+.+++|++.+++-.+++...++.
T Consensus 2 ~~~d~~~~~~eI~~l~~~~~~A~~~~D~~ 30 (135)
T d2ux0a1 2 EDEDLKVRKQEIIKITEQLIEAINNGDFE 30 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHcCCHH
Confidence 46677778888888888888877776663
No 5
>d1rh2a_ a.26.1.3 (A:) Interferon-alpha 2b {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.00 E-value=10 Score=25.48 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=20.3
Q ss_pred ccCCCCCCcchhhhhhHHHHHHHHH
Q 033936 29 DEFHFPSDLISIQDRKDEALQVLRS 53 (108)
Q Consensus 29 ddfhfp~D~is~~~RKDeam~~Lk~ 53 (108)
-||.||.+...-|..|++|..++-+
T Consensus 29 ~dF~fP~e~~~~q~qk~~~~~~~~e 53 (154)
T d1rh2a_ 29 HDFGFPQEEFGNQFQKAETIPVLHE 53 (154)
T ss_pred CCCCChhhhccccccHHHHHHHHHH
Confidence 5899999987778889998876544
No 6
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=37.26 E-value=13 Score=20.61 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccc
Q 033936 44 KDEALQVLRSDLMATLNKEVKSLDE 68 (108)
Q Consensus 44 KDeam~~Lk~dlma~L~keVksLde 68 (108)
||+.+..+-...++.+...+++++|
T Consensus 48 K~~l~~~~~~~~~~~~~~~l~a~~E 72 (72)
T d1pb6a1 48 KEALYIAVLRQILDIWLAPLKAFRE 72 (72)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8899999999899988888888765
No 7
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.53 E-value=6.4 Score=24.82 Aligned_cols=24 Identities=17% Similarity=0.421 Sum_probs=21.4
Q ss_pred hcccccCCcccccccceeEEeecC
Q 033936 63 VKSLDEDNWMFEGPRSHIHLISTA 86 (108)
Q Consensus 63 VksLdeDnWmFe~prSrI~LiSr~ 86 (108)
..++++++|.+......|-+-+|+
T Consensus 14 ~~~~~~~~W~~~~~~~~v~v~~~~ 37 (199)
T d1jssa_ 14 YHSIEEDEWRVAKKAKDVTVWRKP 37 (199)
T ss_dssp HTTSCGGGCEEEEEETTEEEEEEE
T ss_pred hcCcCcCCCeEEEecCCEEEEEEE
Confidence 356899999999999999999886
No 8
>d1otfa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase {Pseudomonas sp., DmpI [TaxId: 306]}
Probab=32.00 E-value=20 Score=19.52 Aligned_cols=33 Identities=15% Similarity=0.368 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHH-----------hcccccCCccccc
Q 033936 43 RKDEALQVLRSDLMATLNKE-----------VKSLDEDNWMFEG 75 (108)
Q Consensus 43 RKDeam~~Lk~dlma~L~ke-----------VksLdeDnWmFe~ 75 (108)
|=+|.-+.|-.++-++|.+. +...+.+||.|.|
T Consensus 11 rs~eqK~~l~~~it~~~~~~~g~~~~~v~V~i~E~~~~nw~~gG 54 (59)
T d1otfa_ 11 RTDEQKETLIRQVSEAMANSLDAPLERVRVLITEMPKNHFGIGG 54 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGGEEETT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeChhhEEECC
Confidence 33444444545555555443 2346778888876
No 9
>d1ev0a_ d.71.1.1 (A:) Cell division protein MinE topological specificity domain {Escherichia coli [TaxId: 562]}
Probab=31.93 E-value=17 Score=21.62 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhcccccCCc
Q 033936 48 LQVLRSDLMATLNKEVKSLDEDNW 71 (108)
Q Consensus 48 m~~Lk~dlma~L~keVksLdeDnW 71 (108)
+-.|+.||++.++|=|+ +|.|.-
T Consensus 9 Lp~Lq~eil~VI~KyV~-Id~d~v 31 (58)
T d1ev0a_ 9 LPQLRKDILEVICKYVQ-IDPEMV 31 (58)
T ss_dssp HHHHHHHHHHHHHHHSC-CCGGGE
T ss_pred HHHHHHHHHHHHHHhEe-ecHHHe
Confidence 56899999999999998 666544
No 10
>d1s0ya_ d.80.1.1 (A:) Trans-3-chloroacrylic acid dehalogenase alpha-subunit, CaaD1 {Pseudomonas pavonaceae [TaxId: 47881]}
Probab=30.35 E-value=26 Score=19.25 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHh-----------cccccCCcccccc
Q 033936 43 RKDEALQVLRSDLMATLNKEV-----------KSLDEDNWMFEGP 76 (108)
Q Consensus 43 RKDeam~~Lk~dlma~L~keV-----------ksLdeDnWmFe~p 76 (108)
|=+|.-..|-.+|.+++.+-. ...+.+||.+.|.
T Consensus 11 rt~eqK~~l~~~it~~~~~~~g~~~e~v~V~i~E~~~~nw~~gG~ 55 (62)
T d1s0ya_ 11 RTDEQKRALSAGLLRVISEATGEPRENIFFVIREGSGINFVEHGE 55 (62)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGEEETTE
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeChHHeEECCE
Confidence 445555556666666665543 3466778887663
No 11
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.81 E-value=22 Score=22.30 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcccccCCcccccccceeEEee
Q 033936 54 DLMATLNKEVKSLDEDNWMFEGPRSHIHLIS 84 (108)
Q Consensus 54 dlma~L~keVksLdeDnWmFe~prSrI~LiS 84 (108)
+.++.+.+-+. ++++|+++.....+-.+.
T Consensus 15 e~~~~~~~il~--~~~~W~~~~~~~~~~~~~ 43 (214)
T d1em2a_ 15 EATAVVDQILA--QEENWKFEKNNEYGDTVY 43 (214)
T ss_dssp HHHHHHHHHHT--TGGGCEEEEECTTCCEEE
T ss_pred HHHHHHHHHhh--CCCCCeEEEEcCCEEEEE
Confidence 44444443332 567899976555444443
No 12
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.40 E-value=4.6 Score=23.07 Aligned_cols=34 Identities=18% Similarity=0.389 Sum_probs=18.6
Q ss_pred HHHHhccc--ccCCccccc---cccee---EEeecCCCCCccc
Q 033936 59 LNKEVKSL--DEDNWMFEG---PRSHI---HLISTAGGFLNKQ 93 (108)
Q Consensus 59 L~keVksL--deDnWmFe~---prSrI---~LiSr~g~~l~kq 93 (108)
|+.+|.++ ++|++...+ ....| ++||. ..|||+|
T Consensus 255 ~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~-~s~~~~~ 296 (297)
T d2bcgg1 255 LDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIAD-PTYFPEK 296 (297)
T ss_dssp CSCCCCEEEEETTTTEEEEEEETTEEEECSCEEEC-GGGCGGG
T ss_pred eCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEC-hhhccCC
Confidence 34567766 667776542 22223 26666 4477765
No 13
>d1v97a4 d.87.2.1 (A:415-528) Xanthine oxidase, domain 4 (?) {Cow (Bos taurus) [TaxId: 9913]}
Probab=26.79 E-value=33 Score=20.92 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=23.3
Q ss_pred cccCCCCCCcc--hhhhhhHHHHHHHHHHHHHHHH
Q 033936 28 TDEFHFPSDLI--SIQDRKDEALQVLRSDLMATLN 60 (108)
Q Consensus 28 ~ddfhfp~D~i--s~~~RKDeam~~Lk~dlma~L~ 60 (108)
.++++.+.|.- +..|||.=|...|+.-+.+.|+
T Consensus 77 ~~~i~p~~d~~g~saeYRk~l~~~ll~k~~~~v~~ 111 (114)
T d1v97a4 77 AEELSLSPDAPGGMIEFRRTLTLSFFFKFYLTVLK 111 (114)
T ss_dssp HHHTCCCTTCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677763 6788888888877776666654
No 14
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=26.49 E-value=23 Score=19.17 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccccC
Q 033936 44 KDEALQVLRSDLMATLNKEVKSLDED 69 (108)
Q Consensus 44 KDeam~~Lk~dlma~L~keVksLdeD 69 (108)
|++.+..+-...++.+...++.+-+|
T Consensus 47 K~~L~~~~~~~~~~~~~~~~~~~~~~ 72 (73)
T d1t56a1 47 KEAVLLTLLDRVVNQADMALQTLAEN 72 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888888888887766543
No 15
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=26.31 E-value=33 Score=18.70 Aligned_cols=26 Identities=19% Similarity=0.320 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccccC
Q 033936 44 KDEALQVLRSDLMATLNKEVKSLDED 69 (108)
Q Consensus 44 KDeam~~Lk~dlma~L~keVksLdeD 69 (108)
|++-+..+-+.+.+.+.+++..+..|
T Consensus 48 K~~L~~~~~~~~~~~~~~~l~~~~~d 73 (74)
T d1v7ba1 48 RHALLLGMHELLADDWDKELRDITRD 73 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 78888888888888888888877654
No 16
>d1mwwa_ d.80.1.4 (A:) Hypothetical protein HI1388.1 {Haemophilus influenzae [TaxId: 727]}
Probab=25.83 E-value=27 Score=21.09 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=25.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHh-----------cccccCCccccc
Q 033936 41 QDRKDEALQVLRSDLMATLNKEV-----------KSLDEDNWMFEG 75 (108)
Q Consensus 41 ~~RKDeam~~Lk~dlma~L~keV-----------ksLdeDnWmFe~ 75 (108)
.-|-+|.-..|-.+|.+.|.+.. ...+.+||.|.|
T Consensus 68 ~grs~eqK~~l~~~lt~~l~~~lgi~~~~v~I~i~e~~~~~W~~~G 113 (120)
T d1mwwa_ 68 AGRMEGTKKRLIKMLFSELEYKLGIRAHDVEITIKEQPAHCWGFRG 113 (120)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECGGGEEETT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEECCHHHeEECC
Confidence 34778888888888888888764 345667777765
No 17
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.66 E-value=31 Score=20.86 Aligned_cols=27 Identities=33% Similarity=0.456 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhcccccCCccccccc
Q 033936 50 VLRSDLMATLNKEVKSLDEDNWMFEGPR 77 (108)
Q Consensus 50 ~Lk~dlma~L~keVksLdeDnWmFe~pr 77 (108)
+|+..+|..|++ +..-+.++|-|..|-
T Consensus 6 el~~~l~~~l~~-l~~~~p~a~pF~~pv 32 (114)
T d3dwya1 6 ELRQALMPTLEA-LYRQDPESLPFRQPV 32 (114)
T ss_dssp HHHHHHHHHHHH-HHTCTTTTGGGSSCC
T ss_pred HHHHHHHHHHHH-HHhcCcCCCccCCCC
Confidence 466666666664 344577999998873
No 18
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}
Probab=24.44 E-value=5.8 Score=25.86 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=38.0
Q ss_pred eeccceecCC--Cc-ccccccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHhcccccCCcccccccceeEEe
Q 033936 11 ISTTPLVGGG--SS-SNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLI 83 (108)
Q Consensus 11 VSttav~gGG--~s-~~~~~~ddfhfp~D~is~~~RKDeam~~Lk~dlma~L~keVksLdeDnWmFe~prSrI~Li 83 (108)
|..-||+|+| |+ ++...+ ..-++ .-..|+-+|++...+..+...|++.++......=.-+....+|...
T Consensus 4 I~~vaViGaG~mG~~iA~~~a-~~G~~---V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 75 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSA-SKGTP---ILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPT 75 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHH-HTTCC---EEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHH-hCCCe---EEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecc
Confidence 4567899998 22 332111 11121 3456677888888888888888877764333322233333445443
No 19
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.33 E-value=9 Score=25.17 Aligned_cols=47 Identities=15% Similarity=0.332 Sum_probs=23.3
Q ss_pred ccceecCC--Cc-ccccccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 033936 13 TTPLVGGG--SS-SNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEV 63 (108)
Q Consensus 13 ttav~gGG--~s-~~~~~~ddfhfp~D~is~~~RKDeam~~Lk~dlma~L~keV 63 (108)
.-+|+|+| |+ ++. .+-..-++ .-..|+-++++...++.+...|++.+
T Consensus 6 kvaViGaG~mG~~iA~-~~a~~G~~---V~l~D~~~~~l~~a~~~i~~~l~~~~ 55 (192)
T d1f0ya2 6 HVTVIGGGLMGAGIAQ-VAAATGHT---VVLVDQTEDILAKSKKGIEESLRKVA 55 (192)
T ss_dssp EEEEECCSHHHHHHHH-HHHHTTCE---EEEECSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECcCHHHHHHHH-HHHhCCCc---EEEEECChHHHHHHHhhHHHHHHHHH
Confidence 45789998 32 322 22222121 23445566666666665555555443
No 20
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=23.82 E-value=44 Score=17.80 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccc
Q 033936 44 KDEALQVLRSDLMATLNKEVKSLD 67 (108)
Q Consensus 44 KDeam~~Lk~dlma~L~keVksLd 67 (108)
||+.+..+-...++.+.+++..++
T Consensus 45 K~~L~~~~~~~~~~~~~~~~~~~~ 68 (69)
T d2np5a1 45 KDEMFAFALRTLVDKLLARLSEVE 68 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 888888888889999888887765
No 21
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Probab=23.68 E-value=34 Score=21.79 Aligned_cols=36 Identities=19% Similarity=0.382 Sum_probs=31.0
Q ss_pred CCCCCcchhhhhhHHHHHHHHHHHHHHHHHHhcccc
Q 033936 32 HFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLD 67 (108)
Q Consensus 32 hfp~D~is~~~RKDeam~~Lk~dlma~L~keVksLd 67 (108)
+||.+.++--+.++..+++...+|=+++.+|=.-|.
T Consensus 53 ~iP~~~f~d~e~R~~lL~a~Q~ALD~aI~~Eeeel~ 88 (91)
T d1xl3c1 53 LFPLGVFSDEEQRQNLLQMCQNAIDMAIESEEEELS 88 (91)
T ss_dssp TSCGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCHHhcCCHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 479999999999999999999999999988865543
No 22
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.94 E-value=31 Score=20.87 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc------------------------ccccCCcccc----cccceeEEeecC
Q 033936 43 RKDEALQVLRSDLMATLNKEVK------------------------SLDEDNWMFE----GPRSHIHLISTA 86 (108)
Q Consensus 43 RKDeam~~Lk~dlma~L~keVk------------------------sLdeDnWmFe----~prSrI~LiSr~ 86 (108)
..+.....||..|.+.+.=.+. -|.||+|... ...+.||||-|.
T Consensus 25 ~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~gI~~g~~l~lv~r~ 96 (105)
T d1v2ya_ 25 VQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKL 96 (105)
T ss_dssp CTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSSEEEEEEECS
T ss_pred CCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcCCCCCCEEEEEEec
Confidence 4566778888888777665554 3888888554 378999999774
No 23
>d1whua_ a.4.9.1 (A:) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.72 E-value=20 Score=22.17 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 033936 43 RKDEALQVLRSDLMATLNKE 62 (108)
Q Consensus 43 RKDeam~~Lk~dlma~L~ke 62 (108)
-+++|+..||.++++.|..+
T Consensus 43 eR~~al~~ik~ei~~~l~e~ 62 (104)
T d1whua_ 43 SRDEAVNKIRLDTEEHLKEK 62 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 45788889999999888543
No 24
>d1mo6a2 d.48.1.1 (A:270-329) RecA protein, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=21.53 E-value=41 Score=19.47 Aligned_cols=23 Identities=26% Similarity=0.422 Sum_probs=17.2
Q ss_pred hhHHHHHHHHH--HHHHHHHHHhcc
Q 033936 43 RKDEALQVLRS--DLMATLNKEVKS 65 (108)
Q Consensus 43 RKDeam~~Lk~--dlma~L~keVks 65 (108)
=||-|..-|++ +|++.|.++|+.
T Consensus 33 Gre~a~~~L~enpel~~eie~~ir~ 57 (60)
T d1mo6a2 33 GKENARNFLVENADVADEIEKKIKE 57 (60)
T ss_dssp SHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 46777777776 788888888764
No 25
>d1rxqa_ a.213.1.1 (A:) YfiT {Bacillus subtilis [TaxId: 1423]}
Probab=21.40 E-value=39 Score=20.49 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcccccCCccc
Q 033936 42 DRKDEALQVLRSDLMATLNKEVKSLDEDNWMF 73 (108)
Q Consensus 42 ~RKDeam~~Lk~dlma~L~keVksLdeDnWmF 73 (108)
..+++.++.|++ ..+.|.+.|+.|+++-|.+
T Consensus 18 ~~~~~~i~~L~~-~~~~L~~~l~~Ls~e~l~~ 48 (174)
T d1rxqa_ 18 EQKDKWIQVLEE-VPAKLKQAVEVMTDSQLDT 48 (174)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHTTCCHHHHTS
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHcCCHHHhcC
Confidence 345777777765 4788889999999987764
No 26
>d2ou6a1 a.213.1.2 (A:2-184) Hypothetical protein DR1065 {Deinococcus radiodurans [TaxId: 1299]}
Probab=20.69 E-value=51 Score=20.42 Aligned_cols=33 Identities=21% Similarity=0.070 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcccccCCccccc
Q 033936 43 RKDEALQVLRSDLMATLNKEVKSLDEDNWMFEG 75 (108)
Q Consensus 43 RKDeam~~Lk~dlma~L~keVksLdeDnWmFe~ 75 (108)
.+-..+.....+.++.+.+.|+.|+++.+.|..
T Consensus 30 ~~~~~L~~~L~~~R~~~l~~le~LseEqL~~~p 62 (183)
T d2ou6a1 30 PHIGALVEMLTYARLTTLQAVEGLPEDQLWATA 62 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCGGGTTCCB
T ss_pred ccHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCC
Confidence 344567778889999999999999999877653
Done!