BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033937
(108 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449457536|ref|XP_004146504.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Cucumis sativus]
gi|449499984|ref|XP_004160970.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Cucumis sativus]
Length = 107
Score = 208 bits (529), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 102/106 (96%), Positives = 103/106 (97%)
Query: 3 SRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 62
SRPMEED KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE
Sbjct: 2 SRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 61
Query: 63 NVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
NVREMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 62 NVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107
>gi|356513032|ref|XP_003525218.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Glycine max]
Length = 108
Score = 205 bits (522), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 103/107 (96%), Positives = 104/107 (97%), Gaps = 1/107 (0%)
Query: 3 SRPMEEDNV-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 61
SRPMEED V KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 2 SRPMEEDTVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 61
Query: 62 ENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
ENVREMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 62 ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
>gi|357521397|ref|XP_003630987.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355525009|gb|AET05463.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|388506390|gb|AFK41261.1| unknown [Medicago truncatula]
Length = 108
Score = 205 bits (521), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 103/107 (96%), Positives = 104/107 (97%), Gaps = 1/107 (0%)
Query: 3 SRPMEEDNV-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 61
SRPMEED V KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 2 SRPMEEDAVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 61
Query: 62 ENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
ENVREMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 62 ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
>gi|359806642|ref|NP_001241022.1| uncharacterized protein LOC100793233 [Glycine max]
gi|255633912|gb|ACU17317.1| unknown [Glycine max]
Length = 108
Score = 204 bits (518), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 102/107 (95%), Positives = 103/107 (96%), Gaps = 1/107 (0%)
Query: 3 SRPMEEDNV-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 61
SRPMEED KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 2 SRPMEEDAAGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 61
Query: 62 ENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
ENVREMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 62 ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
>gi|225424416|ref|XP_002285043.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Vitis vinifera]
Length = 107
Score = 204 bits (518), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 100/106 (94%), Positives = 103/106 (97%)
Query: 3 SRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 62
S PMEED+ KNEEE+FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE
Sbjct: 2 SGPMEEDSAKNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 61
Query: 63 NVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
NVREMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 62 NVREMWTEVPKTGKGKKKANPVNKDRFISKMFLRGDSVIIVLRNPK 107
>gi|351727138|ref|NP_001238430.1| uncharacterized protein LOC100500203 [Glycine max]
gi|255629692|gb|ACU15195.1| unknown [Glycine max]
Length = 117
Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 101/107 (94%), Positives = 103/107 (96%), Gaps = 1/107 (0%)
Query: 3 SRPMEEDNV-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 61
SRPMEED KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 2 SRPMEEDTAGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 61
Query: 62 ENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
ENVREMWTE+PKTGKGKKK+ PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 62 ENVREMWTEVPKTGKGKKKSQPVNKDRFISKMFLRGDSVIIVLRNPK 108
>gi|255573198|ref|XP_002527528.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus communis]
gi|223533078|gb|EEF34837.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus communis]
Length = 103
Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/103 (96%), Positives = 101/103 (98%)
Query: 6 MEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 65
MEED KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 1 MEEDVTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 60
Query: 66 EMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
EMWTE+PKTGKGKKKA+PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61 EMWTEVPKTGKGKKKAMPVNKDRFISKMFLRGDSVIIVLRNPK 103
>gi|30690747|ref|NP_850477.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|42571273|ref|NP_973710.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145332931|ref|NP_001078331.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|7362764|emb|CAB83134.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|28466881|gb|AAO44049.1| At2g47640 [Arabidopsis thaliana]
gi|110743879|dbj|BAE99774.1| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255774|gb|AEC10868.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255775|gb|AEC10869.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|332646880|gb|AEE80401.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
Length = 108
Score = 201 bits (512), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 100/107 (93%), Positives = 104/107 (97%), Gaps = 1/107 (0%)
Query: 3 SRPMEED-NVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 61
S+PMEED N K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVL
Sbjct: 2 SKPMEEDTNGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVL 61
Query: 62 ENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
ENVREMWTE+PKTGKGKKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 62 ENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108
>gi|224068340|ref|XP_002302713.1| predicted protein [Populus trichocarpa]
gi|224128478|ref|XP_002320342.1| predicted protein [Populus trichocarpa]
gi|118481477|gb|ABK92681.1| unknown [Populus trichocarpa]
gi|222844439|gb|EEE81986.1| predicted protein [Populus trichocarpa]
gi|222861115|gb|EEE98657.1| predicted protein [Populus trichocarpa]
Length = 108
Score = 201 bits (511), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 101/107 (94%), Positives = 103/107 (96%), Gaps = 1/107 (0%)
Query: 3 SRPMEEDN-VKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 61
SRPMEED KNEEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 2 SRPMEEDAPSKNEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 61
Query: 62 ENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
ENVREMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 62 ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
>gi|297821194|ref|XP_002878480.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297324318|gb|EFH54739.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 109
Score = 201 bits (510), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 99/108 (91%), Positives = 103/108 (95%), Gaps = 2/108 (1%)
Query: 3 SRPMEEDNV--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
S+PMEED K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMV
Sbjct: 2 SKPMEEDTTQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMV 61
Query: 61 LENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
LENVREMWTE+PKTGKGKKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 62 LENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109
>gi|217075318|gb|ACJ86019.1| unknown [Medicago truncatula]
Length = 108
Score = 200 bits (509), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 101/107 (94%), Positives = 102/107 (95%), Gaps = 1/107 (0%)
Query: 3 SRPMEEDNV-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 61
SRPMEED V KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRV AFDRHCNMVL
Sbjct: 2 SRPMEEDAVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVGAFDRHCNMVL 61
Query: 62 ENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
ENVREMW E+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 62 ENVREMWAEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
>gi|297737605|emb|CBI26806.3| unnamed protein product [Vitis vinifera]
Length = 103
Score = 200 bits (509), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 98/103 (95%), Positives = 101/103 (98%)
Query: 6 MEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 65
MEED+ KNEEE+FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR
Sbjct: 1 MEEDSAKNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 60
Query: 66 EMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61 EMWTEVPKTGKGKKKANPVNKDRFISKMFLRGDSVIIVLRNPK 103
>gi|226506222|ref|NP_001147167.1| LOC100280773 [Zea mays]
gi|195607934|gb|ACG25797.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|195622778|gb|ACG33219.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|238013460|gb|ACR37765.1| unknown [Zea mays]
gi|413942324|gb|AFW74973.1| Small nuclear ribonucleoprotein Sm D2 isoform 1 [Zea mays]
gi|413942325|gb|AFW74974.1| Small nuclear ribonucleoprotein Sm D2 isoform 2 [Zea mays]
gi|413942326|gb|AFW74975.1| Small nuclear ribonucleoprotein Sm D2 isoform 3 [Zea mays]
Length = 104
Score = 199 bits (507), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/102 (95%), Positives = 100/102 (98%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
EE N+K EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE
Sbjct: 3 EETNIKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
MWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 63 MWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 104
>gi|18407411|ref|NP_566107.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145331435|ref|NP_001078076.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145339793|ref|NP_567134.3| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|20196966|gb|AAM14847.1| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|20197310|gb|AAC63620.2| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255773|gb|AEC10867.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255776|gb|AEC10870.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|332646879|gb|AEE80400.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
Length = 109
Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/108 (91%), Positives = 103/108 (95%), Gaps = 2/108 (1%)
Query: 3 SRPMEED--NVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
S+PMEED K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMV
Sbjct: 2 SKPMEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMV 61
Query: 61 LENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
LENVREMWTE+PKTGKGKKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 62 LENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109
>gi|357521399|ref|XP_003630988.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355525010|gb|AET05464.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
Length = 104
Score = 198 bits (504), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 100/104 (96%), Positives = 101/104 (97%), Gaps = 1/104 (0%)
Query: 6 MEEDNV-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64
MEED V KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV
Sbjct: 1 MEEDAVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 60
Query: 65 REMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
REMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61 REMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 104
>gi|242086617|ref|XP_002439141.1| hypothetical protein SORBIDRAFT_09g001270 [Sorghum bicolor]
gi|190688742|gb|ACE86405.1| putative small nuclear ribonucleoprotein D2 [Sorghum bicolor]
gi|241944426|gb|EES17571.1| hypothetical protein SORBIDRAFT_09g001270 [Sorghum bicolor]
Length = 104
Score = 198 bits (503), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 97/101 (96%), Positives = 99/101 (98%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
EE NVK EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE
Sbjct: 3 EETNVKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
MWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP
Sbjct: 63 MWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 103
>gi|116780023|gb|ABK21523.1| unknown [Picea sitchensis]
Length = 108
Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/107 (91%), Positives = 102/107 (95%), Gaps = 1/107 (0%)
Query: 3 SRPMEED-NVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 61
S+PM+ED K EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 2 SKPMDEDMPEKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 61
Query: 62 ENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
ENV+EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 62 ENVKEMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
>gi|192910682|gb|ACF06449.1| small nuclear ribonucleoprotein-like protein [Elaeis guineensis]
Length = 105
Score = 194 bits (494), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 98/105 (93%), Positives = 100/105 (95%), Gaps = 2/105 (1%)
Query: 6 MEEDN--VKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 63
ME+D K EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN
Sbjct: 1 MEDDANAGKKEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 60
Query: 64 VREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
VREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61 VREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 105
>gi|297824871|ref|XP_002880318.1| hypothetical protein ARALYDRAFT_483945 [Arabidopsis lyrata subsp.
lyrata]
gi|21554692|gb|AAM63661.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|21592784|gb|AAM64733.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|297326157|gb|EFH56577.1| hypothetical protein ARALYDRAFT_483945 [Arabidopsis lyrata subsp.
lyrata]
Length = 105
Score = 194 bits (493), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 97/105 (92%), Positives = 100/105 (95%), Gaps = 2/105 (1%)
Query: 6 MEED--NVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 63
MEED K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLEN
Sbjct: 1 MEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLEN 60
Query: 64 VREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
VREMWTE+PKTGKGKKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61 VREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 105
>gi|413918936|gb|AFW58868.1| hypothetical protein ZEAMMB73_850141 [Zea mays]
Length = 104
Score = 194 bits (493), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 95/102 (93%), Positives = 99/102 (97%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
+E+ K EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE
Sbjct: 3 DENAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
MWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 63 MWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 104
>gi|297743892|emb|CBI36862.3| unnamed protein product [Vitis vinifera]
Length = 170
Score = 194 bits (492), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 96/104 (92%), Positives = 99/104 (95%), Gaps = 1/104 (0%)
Query: 6 MEED-NVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64
ME+D KNE EEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV
Sbjct: 67 MEDDATAKNEGEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 126
Query: 65 REMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
REMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 127 REMWTEVPKTGKGKKKANPVNKDRFISKMFLRGDSVIIVLRNPK 170
>gi|297604251|ref|NP_001055168.2| Os05g0314100 [Oryza sativa Japonica Group]
gi|54291778|gb|AAV32147.1| putative small nuclear ribonucleoprotein D2 [Oryza sativa Japonica
Group]
gi|215768148|dbj|BAH00377.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768714|dbj|BAH00943.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196532|gb|EEC78959.1| hypothetical protein OsI_19425 [Oryza sativa Indica Group]
gi|222631079|gb|EEE63211.1| hypothetical protein OsJ_18021 [Oryza sativa Japonica Group]
gi|255676234|dbj|BAF17082.2| Os05g0314100 [Oryza sativa Japonica Group]
Length = 105
Score = 194 bits (492), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 95/102 (93%), Positives = 97/102 (95%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
E K EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE
Sbjct: 4 EATQGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 63
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
MWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 64 MWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 105
>gi|212722184|ref|NP_001131740.1| uncharacterized protein LOC100193106 [Zea mays]
gi|194692396|gb|ACF80282.1| unknown [Zea mays]
gi|195629728|gb|ACG36505.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|413918934|gb|AFW58866.1| Small nuclear ribonucleoprotein Sm D2 isoform 1 [Zea mays]
gi|413918935|gb|AFW58867.1| Small nuclear ribonucleoprotein Sm D2 isoform 2 [Zea mays]
Length = 105
Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/97 (96%), Positives = 96/97 (98%)
Query: 12 KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 71
K EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 9 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 68
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 69 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 105
>gi|212720721|ref|NP_001132149.1| uncharacterized protein LOC100193568 [Zea mays]
gi|194693576|gb|ACF80872.1| unknown [Zea mays]
gi|414586342|tpg|DAA36913.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
gi|414586343|tpg|DAA36914.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
Length = 105
Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/102 (93%), Positives = 98/102 (96%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
E + K EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE
Sbjct: 4 ENEAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 63
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
MWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 64 MWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 105
>gi|414586344|tpg|DAA36915.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
Length = 102
Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/97 (96%), Positives = 96/97 (98%)
Query: 12 KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 71
K EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 6 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 65
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 66 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 102
>gi|326493364|dbj|BAJ85143.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 107
Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/100 (93%), Positives = 97/100 (97%)
Query: 9 DNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 68
D K EEEEF+TGPLS+LM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW
Sbjct: 8 DQGKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 67
Query: 69 TELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
TE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 68 TEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 107
>gi|225437378|ref|XP_002268945.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Vitis vinifera]
Length = 104
Score = 191 bits (486), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 96/104 (92%), Positives = 99/104 (95%), Gaps = 1/104 (0%)
Query: 6 MEED-NVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64
ME+D KNE EEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV
Sbjct: 1 MEDDATAKNEGEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 60
Query: 65 REMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
REMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61 REMWTEVPKTGKGKKKANPVNKDRFISKMFLRGDSVIIVLRNPK 104
>gi|242076520|ref|XP_002448196.1| hypothetical protein SORBIDRAFT_06g022770 [Sorghum bicolor]
gi|241939379|gb|EES12524.1| hypothetical protein SORBIDRAFT_06g022770 [Sorghum bicolor]
Length = 105
Score = 191 bits (485), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 93/96 (96%), Positives = 95/96 (98%)
Query: 12 KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 71
K EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 9 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 68
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP
Sbjct: 69 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 104
>gi|357495275|ref|XP_003617926.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355519261|gb|AET00885.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
Length = 159
Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/105 (87%), Positives = 98/105 (93%)
Query: 4 RPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 63
+PME+ + N+EEEFN GPLSVL MSV+NNTQVLINCRNNKKLLGRV AFDRHCNMVLEN
Sbjct: 55 KPMEDAVIMNQEEEFNIGPLSVLYMSVRNNTQVLINCRNNKKLLGRVMAFDRHCNMVLEN 114
Query: 64 VREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
VREMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 115 VREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 159
>gi|357126948|ref|XP_003565149.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 1 [Brachypodium distachyon]
gi|357126950|ref|XP_003565150.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 2 [Brachypodium distachyon]
Length = 105
Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/97 (94%), Positives = 95/97 (97%)
Query: 12 KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 71
K EEEEF+TGPLSVLM+SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+
Sbjct: 9 KKEEEEFSTGPLSVLMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 68
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 69 PKTGKGKKKAHPVNKDRFISKMFLRGDSVIIVLRNPK 105
>gi|388501344|gb|AFK38738.1| unknown [Medicago truncatula]
Length = 97
Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/96 (92%), Positives = 92/96 (95%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 72
N+EEEFN GPLSVL MSV+NNTQVLINCRNNKKLLGRV AFDRHCNMVLENVREMWTE+P
Sbjct: 2 NQEEEFNIGPLSVLYMSVRNNTQVLINCRNNKKLLGRVMAFDRHCNMVLENVREMWTEVP 61
Query: 73 KTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
KTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 62 KTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 97
>gi|380027112|ref|XP_003697276.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Apis florea]
Length = 133
Score = 175 bits (443), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 83/90 (92%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 37 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 96
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKKA PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 97 KKKAKPVNKDRFISKMFLRGDSVILVLRNP 126
>gi|66500455|ref|XP_397475.2| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 1 [Apis mellifera]
gi|340709815|ref|XP_003393496.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Bombus terrestris]
gi|350410361|ref|XP_003489020.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Bombus impatiens]
gi|383861912|ref|XP_003706428.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Megachile rotundata]
Length = 120
Score = 174 bits (442), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/90 (92%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKKA PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKAKPVNKDRFISKMFLRGDSVILVLRNP 113
>gi|328792204|ref|XP_003251694.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Apis mellifera]
Length = 122
Score = 174 bits (441), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 83/90 (92%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 26 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 85
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKKA PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 86 KKKAKPVNKDRFISKMFLRGDSVILVLRNP 115
>gi|307177333|gb|EFN66506.1| Probable small nuclear ribonucleoprotein Sm D2 [Camponotus
floridanus]
Length = 137
Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/90 (91%), Positives = 86/90 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 41 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 100
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKKA PVNKDRFI KMFLRGDSVI+VLRNP
Sbjct: 101 KKKAKPVNKDRFIPKMFLRGDSVILVLRNP 130
>gi|156544546|ref|XP_001607849.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Nasonia vitripennis]
Length = 120
Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/90 (91%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKKA PVNKDRFISKMFLRGDSVI+V+RNP
Sbjct: 84 KKKAKPVNKDRFISKMFLRGDSVILVVRNP 113
>gi|321460184|gb|EFX71229.1| hypothetical protein DAPPUDRAFT_309154 [Daphnia pulex]
Length = 122
Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/90 (90%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKG
Sbjct: 25 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKG 84
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 85 KKKSKPVNKDRFISKMFLRGDSVILVLRNP 114
>gi|307194529|gb|EFN76821.1| Probable small nuclear ribonucleoprotein Sm D2 [Harpegnathos
saltator]
gi|322786953|gb|EFZ13177.1| hypothetical protein SINV_00701 [Solenopsis invicta]
Length = 110
Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 82/90 (91%), Positives = 86/90 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 14 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 73
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKKA PVNKDRFI KMFLRGDSVI+VLRNP
Sbjct: 74 KKKAKPVNKDRFIPKMFLRGDSVILVLRNP 103
>gi|115629150|ref|XP_001178435.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like
[Strongylocentrotus purpuratus]
gi|115918091|ref|XP_001177365.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like
[Strongylocentrotus purpuratus]
Length = 118
Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 78/90 (86%), Positives = 85/90 (94%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE PK GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTETPKAGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KK++ PVNKDR+I+KMFLRGDSVI+VLRNP
Sbjct: 84 KKRSKPVNKDRYITKMFLRGDSVILVLRNP 113
>gi|145343983|ref|XP_001416522.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576747|gb|ABO94815.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 103
Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/103 (78%), Positives = 89/103 (86%)
Query: 6 MEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 65
M+ + EE EF TGPLSVL SVK NTQVLINCRNN+KLL RV+AFDRHCNMVLENV+
Sbjct: 1 MDARDGDKEENEFVTGPLSVLTASVKANTQVLINCRNNRKLLARVKAFDRHCNMVLENVK 60
Query: 66 EMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
E+WTE+PKTGKG KA PVNKDRFISKMFLRGDSVI+VLRNPK
Sbjct: 61 EIWTEVPKTGKGAAKAKPVNKDRFISKMFLRGDSVILVLRNPK 103
>gi|384247738|gb|EIE21224.1| small nuclear ribonucleo protein Sm D2 [Coccomyxa subellipsoidea
C-169]
Length = 110
Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 79/106 (74%), Positives = 93/106 (87%)
Query: 3 SRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 62
+ P ++ K EEE F TGPLSVL SVK+N+QVLINCRNN+KLLGRV+AFDRHCNM+LE
Sbjct: 5 TNPSVDELEKREEELFRTGPLSVLTTSVKSNSQVLINCRNNRKLLGRVKAFDRHCNMILE 64
Query: 63 NVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
NV+EMWTE+PKTGKGKK + PVNKDRFI K+F+RGDSVI+VLRNPK
Sbjct: 65 NVKEMWTEIPKTGKGKKGSTPVNKDRFIPKLFIRGDSVILVLRNPK 110
>gi|168057690|ref|XP_001780846.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667702|gb|EDQ54325.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 99
Score = 164 bits (416), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/97 (91%), Positives = 94/97 (96%)
Query: 12 KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 71
K EEEEF+TGPLSVL MSVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+
Sbjct: 3 KTEEEEFSTGPLSVLAMSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 62
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
PKTGKGKKKA PVNKDRFISKMFLRG+SVIIVLRNPK
Sbjct: 63 PKTGKGKKKAKPVNKDRFISKMFLRGESVIIVLRNPK 99
>gi|302766595|ref|XP_002966718.1| hypothetical protein SELMODRAFT_439675 [Selaginella moellendorffii]
gi|300166138|gb|EFJ32745.1| hypothetical protein SELMODRAFT_439675 [Selaginella moellendorffii]
Length = 1249
Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 91/106 (85%), Positives = 96/106 (90%), Gaps = 2/106 (1%)
Query: 3 SRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 62
+R MEED K EEEFN GPLSVL SVK NTQVLINCRNN+KLLGRV+AFDRHCNMVLE
Sbjct: 1025 ARAMEEDTKK--EEEFNIGPLSVLTSSVKQNTQVLINCRNNRKLLGRVKAFDRHCNMVLE 1082
Query: 63 NVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
NVREMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVL+NPK
Sbjct: 1083 NVREMWTEVPKTGKGKKKAKPVNKDRFISKMFLRGDSVIIVLKNPK 1128
>gi|443703701|gb|ELU01136.1| hypothetical protein CAPTEDRAFT_149444 [Capitella teleta]
Length = 118
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/100 (86%), Positives = 94/100 (94%)
Query: 8 EDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
E+ + E+EEFNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 15 EELAQREQEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 74
Query: 68 WTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
WTE+PKTGKGKKK+ PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 75 WTEVPKTGKGKKKSKPVNKDRFISKMFLRGDSVILVLRNP 114
>gi|308801164|ref|XP_003075361.1| small nuclear ribonucleoprotein D2-like protein (ISS) [Ostreococcus
tauri]
gi|116061917|emb|CAL52635.1| small nuclear ribonucleoprotein D2-like protein (ISS), partial
[Ostreococcus tauri]
Length = 103
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/91 (83%), Positives = 83/91 (91%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
F TGPLSVL SVK NTQVLINCRNN+KLL RV+AFDRHCNMVLENV+E+WTE+PKTGKG
Sbjct: 13 FTTGPLSVLTASVKANTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEIWTEVPKTGKG 72
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
KA PVNKDRF+SKMFLRGDSVI+VLRNPK
Sbjct: 73 SAKAKPVNKDRFVSKMFLRGDSVILVLRNPK 103
>gi|328768266|gb|EGF78313.1| hypothetical protein BATDEDRAFT_90808 [Batrachochytrium
dendrobatidis JAM81]
Length = 115
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/93 (79%), Positives = 84/93 (90%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF TGPLS+L +VKN++QVL+ CRNN+KLL RV+AFDRHCNMVLENV+EMWTE P+
Sbjct: 21 EEAEFQTGPLSILTQAVKNSSQVLVVCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPQ 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
TGKG KKA PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 81 TGKGIKKAKPVNKDRFISKMFLRGDSVILVLRN 113
>gi|241690286|ref|XP_002411748.1| small nuclear ribonucleoprotein sm D2, putative [Ixodes scapularis]
gi|215504583|gb|EEC14077.1| small nuclear ribonucleoprotein sm D2, putative [Ixodes scapularis]
gi|442752791|gb|JAA68555.1| Putative small nuclear ribonucleoprotein d2 polypeptide [Ixodes
ricinus]
Length = 118
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/90 (86%), Positives = 84/90 (93%), Gaps = 1/90 (1%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGK
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPKTGKS 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KK PVNKDR+ISKMFLRGDSVI+VL+NP
Sbjct: 84 KKNN-PVNKDRYISKMFLRGDSVILVLKNP 112
>gi|427786227|gb|JAA58565.1| Putative small nuclear ribonucleoprotein d2 polypeptide
[Rhipicephalus pulchellus]
Length = 118
Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/90 (86%), Positives = 84/90 (93%), Gaps = 1/90 (1%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGK
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPKTGKS 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KK PVNKDR+ISKMFLRGDSVI+VL+NP
Sbjct: 84 KKNN-PVNKDRYISKMFLRGDSVILVLKNP 112
>gi|221114937|ref|XP_002158231.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Hydra magnipapillata]
Length = 118
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/90 (84%), Positives = 85/90 (94%), Gaps = 1/90 (1%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
F TGPLSVLM SVKNNTQVLINCRNN+KLLGRV+AFDRHCNMVLENV+EMW E+PKTGKG
Sbjct: 24 FKTGPLSVLMTSVKNNTQVLINCRNNRKLLGRVKAFDRHCNMVLENVKEMWYEIPKTGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKA P+NKDR+I+KMFLRGDSVI+VL+NP
Sbjct: 84 -KKAKPINKDRYIAKMFLRGDSVILVLKNP 112
>gi|346468901|gb|AEO34295.1| hypothetical protein [Amblyomma maculatum]
gi|346468903|gb|AEO34296.1| hypothetical protein [Amblyomma maculatum]
gi|346468905|gb|AEO34297.1| hypothetical protein [Amblyomma maculatum]
Length = 118
Score = 160 bits (406), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 77/90 (85%), Positives = 84/90 (93%), Gaps = 1/90 (1%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGK
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPRTGKS 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KK PVNKDR+ISKMFLRGDSVI+VL+NP
Sbjct: 84 KKNN-PVNKDRYISKMFLRGDSVILVLKNP 112
>gi|260835152|ref|XP_002612573.1| hypothetical protein BRAFLDRAFT_265042 [Branchiostoma floridae]
gi|229297951|gb|EEN68582.1| hypothetical protein BRAFLDRAFT_265042 [Branchiostoma floridae]
Length = 116
Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 83/100 (83%), Positives = 93/100 (93%)
Query: 8 EDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
E+ + E+EEFNTGPLSVL SVKNNTQVLINCRNNKKLL RV+AFDRHCNMVLENV+EM
Sbjct: 11 EELAQREQEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEM 70
Query: 68 WTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
WTE+PKTGKGKKK+ P+NKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 71 WTEVPKTGKGKKKSKPINKDRYISKMFLRGDSVILVLRNP 110
>gi|134948671|ref|NP_001077096.1| small nuclear ribonucleoprotein sm d2 [Bombyx mori]
gi|117606770|gb|ABK42005.1| small nuclear ribonucleoprotein sm d2 [Bombyx mori]
Length = 119
Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 77/90 (85%), Positives = 84/90 (93%), Gaps = 1/90 (1%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
F+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKG
Sbjct: 24 FSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KK VNKD+FISKMFLRGDSVI+VLRNP
Sbjct: 84 -KKGKAVNKDKFISKMFLRGDSVILVLRNP 112
>gi|405978739|gb|EKC43103.1| Putative small nuclear ribonucleoprotein Sm D2 [Crassostrea gigas]
Length = 119
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/100 (83%), Positives = 93/100 (93%)
Query: 8 EDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
E+ + E+EEFNTGPLSVL SVKNNTQVLINCRNNKKLL RV+AFDRHCNMVLENV+EM
Sbjct: 15 EELSQREQEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEM 74
Query: 68 WTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
WTE+PKTGKGKKK+ PVNKDR+ISKMFLRGDSVI++LRNP
Sbjct: 75 WTEVPKTGKGKKKSKPVNKDRYISKMFLRGDSVILILRNP 114
>gi|196006700|ref|XP_002113216.1| hypothetical protein TRIADDRAFT_57149 [Trichoplax adhaerens]
gi|190583620|gb|EDV23690.1| hypothetical protein TRIADDRAFT_57149 [Trichoplax adhaerens]
Length = 173
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/100 (76%), Positives = 89/100 (89%), Gaps = 1/100 (1%)
Query: 8 EDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
E+ K EEE FNTGPLS+L +VKN+ QVLINCRNN+K+L RV+AFDRHCNMVLENV+EM
Sbjct: 66 EELAKVEEELFNTGPLSILTQAVKNSDQVLINCRNNRKILARVKAFDRHCNMVLENVKEM 125
Query: 68 WTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
WTE P+TGKG +KA PVNKDR+ISKMFLRGDSVI+VL+NP
Sbjct: 126 WTETPRTGKG-RKAKPVNKDRYISKMFLRGDSVILVLKNP 164
>gi|357627860|gb|EHJ77403.1| small nuclear ribonucleoprotein sm d2 [Danaus plexippus]
Length = 109
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/90 (85%), Positives = 84/90 (93%), Gaps = 1/90 (1%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
F+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKG
Sbjct: 14 FSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKG 73
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KK VNKD+FISKMFLRGDSVI+VLRNP
Sbjct: 74 -KKGKAVNKDKFISKMFLRGDSVILVLRNP 102
>gi|255070809|ref|XP_002507486.1| small nuclear ribonucleoprotein sm D2 [Micromonas sp. RCC299]
gi|226522761|gb|ACO68744.1| small nuclear ribonucleoprotein sm D2 [Micromonas sp. RCC299]
Length = 101
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/97 (75%), Positives = 87/97 (89%)
Query: 12 KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 71
KNE ++F GPLSVL SVK + QVLI+CRNN+KLLGRV+AFDRHCNMVLENV+E+WTE+
Sbjct: 5 KNEGQDFQAGPLSVLSHSVKTSAQVLISCRNNRKLLGRVKAFDRHCNMVLENVKELWTEI 64
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
PKTGKG KKA ++KDRF+SKMF+RGDSVI+VLRNPK
Sbjct: 65 PKTGKGCKKARTISKDRFLSKMFIRGDSVILVLRNPK 101
>gi|328867188|gb|EGG15571.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 110
Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/107 (79%), Positives = 98/107 (91%)
Query: 1 MSSRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
MSS PM+++ +++ +EF TGPLS+LM SVKNNTQ+LIN RNNKKLL RVRAFDRHCNMV
Sbjct: 1 MSSTPMDQEEDRDDLKEFETGPLSILMESVKNNTQILINVRNNKKLLARVRAFDRHCNMV 60
Query: 61 LENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
LENV+EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVI+VL+NP
Sbjct: 61 LENVKEMWTEVPKTGKGKKKAKPVNKDRFISKMFLRGDSVILVLKNP 107
>gi|242024699|ref|XP_002432764.1| small nuclear ribonucleoprotein sm D2, putative [Pediculus humanus
corporis]
gi|212518249|gb|EEB20026.1| small nuclear ribonucleoprotein sm D2, putative [Pediculus humanus
corporis]
Length = 110
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/96 (87%), Positives = 91/96 (94%)
Query: 12 KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 71
K EEEEF+TGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHCNMVLENV+EMWTEL
Sbjct: 8 KREEEEFSTGPLSVLSQSVKNNTQVLINCRNNRKLLGRVKAFDRHCNMVLENVKEMWTEL 67
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
P++GKGKKKA VNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 68 PRSGKGKKKAKSVNKDRFISKMFLRGDSVILVLRNP 103
>gi|391344476|ref|XP_003746524.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Metaseiulus occidentalis]
Length = 116
Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/90 (85%), Positives = 81/90 (90%), Gaps = 1/90 (1%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
F TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE P+T KG
Sbjct: 23 FETGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTETPRTAKG 82
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
+K PVNKDRFI KMFLRGDSVIIVLRNP
Sbjct: 83 -RKGQPVNKDRFIPKMFLRGDSVIIVLRNP 111
>gi|159480556|ref|XP_001698348.1| small nuclear ribonucleoprotein Sm D2 [Chlamydomonas reinhardtii]
gi|158282088|gb|EDP07841.1| small nuclear ribonucleoprotein Sm D2 [Chlamydomonas reinhardtii]
Length = 110
Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/91 (80%), Positives = 82/91 (90%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
+ TGPLSVL SVK N QVLINCRNN KLL RV+AFDRHCNM+LENV+EMWTE+PKTGKG
Sbjct: 20 YRTGPLSVLTQSVKTNGQVLINCRNNHKLLARVKAFDRHCNMILENVKEMWTEIPKTGKG 79
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
+K + PVNKDRF+SKMFLRGDSVI+VLRNPK
Sbjct: 80 QKASRPVNKDRFVSKMFLRGDSVIMVLRNPK 110
>gi|156361110|ref|XP_001625363.1| predicted protein [Nematostella vectensis]
gi|156212193|gb|EDO33263.1| predicted protein [Nematostella vectensis]
Length = 119
Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/100 (82%), Positives = 92/100 (92%)
Query: 8 EDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
E+ + E+EEFNTGPLSVL SVKNNTQVLINCRNN+KLL RV+AFDRHCNMVLENV+EM
Sbjct: 15 EELAQREQEEFNTGPLSVLTQSVKNNTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEM 74
Query: 68 WTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
WTE PK+GKGKKKA PVNKDR+I+KMFLRGDSVI+VLRNP
Sbjct: 75 WTETPKSGKGKKKAKPVNKDRYIAKMFLRGDSVILVLRNP 114
>gi|303274376|ref|XP_003056509.1| small nuclear ribonucleoprotein sm D2 [Micromonas pusilla CCMP1545]
gi|226462593|gb|EEH59885.1| small nuclear ribonucleoprotein sm D2 [Micromonas pusilla CCMP1545]
Length = 103
Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/97 (74%), Positives = 87/97 (89%)
Query: 12 KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 71
K E++EF+TGPLSVL SVK N+QVLINCRNN+KLLG+++AFDRHCNMVLENV+E W E+
Sbjct: 7 KFEDQEFDTGPLSVLTQSVKTNSQVLINCRNNRKLLGQIKAFDRHCNMVLENVKEYWLEV 66
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
KTGKG K+ P++K+RFISKMFLRGDSVI+VLRNPK
Sbjct: 67 SKTGKGVKRTTPIHKERFISKMFLRGDSVILVLRNPK 103
>gi|357495277|ref|XP_003617927.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355519262|gb|AET00886.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
Length = 81
Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 77/81 (95%), Positives = 79/81 (97%)
Query: 28 MSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD 87
MSV+NNTQVLINCRNNKKLLGRV AFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNKD
Sbjct: 1 MSVRNNTQVLINCRNNKKLLGRVMAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKD 60
Query: 88 RFISKMFLRGDSVIIVLRNPK 108
RFISKMFLRGDSVIIVLRNPK
Sbjct: 61 RFISKMFLRGDSVIIVLRNPK 81
>gi|302839956|ref|XP_002951534.1| hypothetical protein VOLCADRAFT_81522 [Volvox carteri f.
nagariensis]
gi|300263143|gb|EFJ47345.1| hypothetical protein VOLCADRAFT_81522 [Volvox carteri f.
nagariensis]
Length = 110
Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/91 (80%), Positives = 81/91 (89%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
+ TGPLSVL SVK N QVLINCRNN KLL RV+AFDRHCNM+LENV+EMWTE+PKTGKG
Sbjct: 20 YRTGPLSVLTQSVKTNGQVLINCRNNHKLLARVKAFDRHCNMILENVKEMWTEIPKTGKG 79
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
K + PVNKDRF+SKMFLRGDSVI+VLRNPK
Sbjct: 80 SKGSRPVNKDRFVSKMFLRGDSVIMVLRNPK 110
>gi|168017146|ref|XP_001761109.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687795|gb|EDQ74176.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 99
Score = 157 bits (397), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 89/97 (91%), Positives = 93/97 (95%)
Query: 12 KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 71
K EEEEF+TGPLSVL MSVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+
Sbjct: 3 KTEEEEFSTGPLSVLTMSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 62
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
PK GKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 63 PKAGKGKKKAKPVNKDRFISKMFLRGDSVIIVLRNPK 99
>gi|126697412|gb|ABO26663.1| small nuclear ribonucleoprotein D2-like protein [Haliotis discus
discus]
Length = 119
Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/94 (87%), Positives = 89/94 (94%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
E+EEFNT PLSVL SVKNNTQVLINCRNNKKLL RV+AFDRHCNMVLENV+EMWTE+PK
Sbjct: 21 EQEEFNTEPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPK 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
TGKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 81 TGKGKKKSKPVNKDRYISKMFLRGDSVILVLRNP 114
>gi|168044533|ref|XP_001774735.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673890|gb|EDQ60406.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 103
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
F+TGPLSVL MSVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKG
Sbjct: 13 FSTGPLSVLTMSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKG 72
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
KKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 73 KKKAKPVNKDRFISKMFLRGDSVIIVLRNPK 103
>gi|428173912|gb|EKX42811.1| hypothetical protein GUITHDRAFT_153446 [Guillardia theta CCMP2712]
Length = 99
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/93 (77%), Positives = 84/93 (90%)
Query: 15 EEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKT 74
+E+F+ GPLS+L SV+ N QVLINCRNN+KLL RV+AFDRHCNMVLENV+EMWTE P+T
Sbjct: 6 KEDFSAGPLSLLADSVRKNCQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTEAPRT 65
Query: 75 GKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
GKGK K+ PVNKDRFISKMFLRGDSVI+VL+NP
Sbjct: 66 GKGKAKSKPVNKDRFISKMFLRGDSVIMVLKNP 98
>gi|307108556|gb|EFN56796.1| hypothetical protein CHLNCDRAFT_22041 [Chlorella variabilis]
Length = 115
Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 77/110 (70%), Positives = 89/110 (80%), Gaps = 3/110 (2%)
Query: 2 SSRPMEEDNVKNEEEEFNTGPLSVLMMSV---KNNTQVLINCRNNKKLLGRVRAFDRHCN 58
+++P ++ K EE+ F TGPLSVL MS QVLINCRNN+KLLGRV+AFDRHCN
Sbjct: 6 AAQPSVDELEKKEEDLFRTGPLSVLTMSRCLRVACVQVLINCRNNRKLLGRVKAFDRHCN 65
Query: 59 MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
MVLENV+E WTE+PK GKG K + PVNKDRFISKMFLRGDSVI+VLRNPK
Sbjct: 66 MVLENVKEFWTEIPKRGKGAKASKPVNKDRFISKMFLRGDSVILVLRNPK 115
>gi|291224549|ref|XP_002732266.1| PREDICTED: Small Nuclear Ribonucleoprotein family member
(snr-4)-like [Saccoglossus kowalevskii]
Length = 123
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/90 (90%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKG
Sbjct: 29 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKG 88
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 89 KKKSKPVNKDRYISKMFLRGDSVILVLRNP 118
>gi|348676937|gb|EGZ16754.1| hypothetical protein PHYSODRAFT_559644 [Phytophthora sojae]
Length = 123
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/97 (82%), Positives = 88/97 (90%)
Query: 11 VKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 70
V+ +EEEF GPLSVLM SVKNN+QVLIN RNN KLL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 25 VQEDEEEFQKGPLSVLMHSVKNNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTE 84
Query: 71 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
+PK+GKGKK A PVNKDRF+SKMFLRGDSVIIVLRNP
Sbjct: 85 VPKSGKGKKAAKPVNKDRFVSKMFLRGDSVIIVLRNP 121
>gi|256085048|ref|XP_002578736.1| small nuclear ribonucleoprotein Sm D2 [Schistosoma mansoni]
gi|360045476|emb|CCD83024.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
mansoni]
Length = 124
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/101 (79%), Positives = 92/101 (91%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
EE+ + E++EF TGPLSVL +VKNNTQVLINCRNNKKLL RV+AFDRHCNMVLENV+E
Sbjct: 14 EEELYEIEKQEFETGPLSVLTNAVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKE 73
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
MWTE+P+ GKGKKK+ PVNKDRFISK+FLRGDSVI+VLRNP
Sbjct: 74 MWTEVPRPGKGKKKSKPVNKDRFISKLFLRGDSVILVLRNP 114
>gi|22203734|gb|AAM94277.1| small nuclear ribonucleoprotein D2-like protein [Azumapecten
farreri]
Length = 119
Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/90 (88%), Positives = 86/90 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLL RV+AFDRHCNMVLENV+EMWTE+PKTGKG
Sbjct: 25 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKG 84
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 85 KKKSKPVNKDRYISKMFLRGDSVILVLRNP 114
>gi|226470754|emb|CAX76810.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470756|emb|CAX76811.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470758|emb|CAX76812.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470760|emb|CAX76813.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470762|emb|CAX76814.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470764|emb|CAX76815.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470766|emb|CAX76816.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470768|emb|CAX76817.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473196|emb|CAX71284.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473198|emb|CAX71285.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473200|emb|CAX71286.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473202|emb|CAX71287.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
Length = 124
Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/101 (79%), Positives = 92/101 (91%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
EE+ + E++EF TGPLSVL +VKNNTQVLINCRNNKKLL RV+AFDRHCNMVLENV+E
Sbjct: 14 EEELYEIEKQEFETGPLSVLTNAVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKE 73
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
MWTE+P+ GKGKKK+ PVNKDRFISK+FLRGDSVI+VLRNP
Sbjct: 74 MWTEVPRPGKGKKKSKPVNKDRFISKLFLRGDSVILVLRNP 114
>gi|225712108|gb|ACO11900.1| Probable small nuclear ribonucleoprotein Sm D2 [Lepeophtheirus
salmonis]
Length = 115
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/90 (90%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLE+V+EMWTE+PKTGKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLESVKEMWTEMPKTGKG 82
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKKA PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 83 KKKAKPVNKDRYISKMFLRGDSVILVLRNP 112
>gi|313226859|emb|CBY22004.1| unnamed protein product [Oikopleura dioica]
gi|313242576|emb|CBY34708.1| unnamed protein product [Oikopleura dioica]
Length = 118
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/90 (81%), Positives = 80/90 (88%), Gaps = 1/90 (1%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
F TGPLSVL SV+NNTQVLINCRNN+KL+GRV+AFDRHCNMVLENV+EMW E PKT KG
Sbjct: 25 FQTGPLSVLTESVRNNTQVLINCRNNRKLMGRVKAFDRHCNMVLENVKEMWVERPKTAKG 84
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
K PVN+DRFISKMFLRGDSVIIVL+NP
Sbjct: 85 -KGGQPVNRDRFISKMFLRGDSVIIVLKNP 113
>gi|328768108|gb|EGF78155.1| hypothetical protein BATDEDRAFT_91018 [Batrachochytrium
dendrobatidis JAM81]
Length = 109
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/88 (78%), Positives = 78/88 (88%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF TGPLS+L +VKN++QVL+ CRNN+KLL RV+AFDRHCNMVLENV+EMWTE P+
Sbjct: 21 EEAEFQTGPLSILTQAVKNSSQVLVVCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPQ 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVI 101
TGKG KKA PVNKDRFISKMFLRGDS I
Sbjct: 81 TGKGIKKAKPVNKDRFISKMFLRGDSGI 108
>gi|384500116|gb|EIE90607.1| small nuclear ribonucleoprotein Sm D2 [Rhizopus delemar RA 99-880]
Length = 113
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/89 (79%), Positives = 80/89 (89%), Gaps = 1/89 (1%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNN Q+LI+CRNN KLL RV+AFDRHCNMVLENV+EMWTE P+TGKG
Sbjct: 24 FNTGPLSVLQQSVKNNNQILISCRNNHKLLARVKAFDRHCNMVLENVKEMWTETPRTGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRN 106
KA PVNKDRF+SKMFLRGD+V++VLRN
Sbjct: 84 -SKAKPVNKDRFVSKMFLRGDTVVLVLRN 111
>gi|313214959|emb|CBY41164.1| unnamed protein product [Oikopleura dioica]
Length = 118
Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 73/90 (81%), Positives = 80/90 (88%), Gaps = 1/90 (1%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
F TGPLSVL SV+NNTQVLINCRNN+KL+GRV+AFDRHCNMVLENV+EMW E PKT KG
Sbjct: 25 FQTGPLSVLTESVRNNTQVLINCRNNRKLMGRVKAFDRHCNMVLENVKEMWVERPKTSKG 84
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
K PVN+DRFISKMFLRGDSVIIVL+NP
Sbjct: 85 -KGGQPVNRDRFISKMFLRGDSVIIVLKNP 113
>gi|358342021|dbj|GAA49579.1| small nuclear ribonucleoprotein D2 [Clonorchis sinensis]
Length = 124
Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 79/101 (78%), Positives = 92/101 (91%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
EE+ + E++EF TGPLSVL +VKNNTQVLINCRNNKKLL RV+AFDRHCNMVLENV+E
Sbjct: 15 EEELYELEKQEFETGPLSVLTNAVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKE 74
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
MWTE+P+ GKGKKK+ PVNKDR+ISK+FLRGDSVI+VLRNP
Sbjct: 75 MWTEVPRPGKGKKKSKPVNKDRYISKLFLRGDSVILVLRNP 115
>gi|91090234|ref|XP_968776.1| PREDICTED: similar to CG1249 CG1249-PA [Tribolium castaneum]
gi|270013456|gb|EFA09904.1| hypothetical protein TcasGA2_TC012054 [Tribolium castaneum]
Length = 118
Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/90 (88%), Positives = 86/90 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCN+VLENV+EMWTELP+ GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNIVLENVKEMWTELPRPGKG 82
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKKA PVNKDRFISKMFLRGD+VIIV+RNP
Sbjct: 83 KKKAKPVNKDRFISKMFLRGDAVIIVVRNP 112
>gi|332376785|gb|AEE63532.1| unknown [Dendroctonus ponderosae]
Length = 117
Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 79/90 (87%), Positives = 86/90 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+ GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRPGKG 82
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKKA PVNKDRFISKMFLRGD+VI+++RNP
Sbjct: 83 KKKAKPVNKDRFISKMFLRGDAVIMIVRNP 112
>gi|195061660|ref|XP_001996040.1| GH14279 [Drosophila grimshawi]
gi|193891832|gb|EDV90698.1| GH14279 [Drosophila grimshawi]
Length = 128
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/90 (91%), Positives = 86/90 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 32 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 91
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 92 KKKVKPVNKDRFISKMFLRGDSVILVLRNP 121
>gi|218189807|gb|EEC72234.1| hypothetical protein OsI_05349 [Oryza sativa Indica Group]
Length = 96
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/75 (96%), Positives = 73/75 (97%)
Query: 34 TQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 93
VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKM
Sbjct: 22 VAVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKM 81
Query: 94 FLRGDSVIIVLRNPK 108
FLRGDSVIIVLRNPK
Sbjct: 82 FLRGDSVIIVLRNPK 96
>gi|339252990|ref|XP_003371718.1| small nuclear ribonucleoprotein Sm D2 [Trichinella spiralis]
gi|316967993|gb|EFV52337.1| small nuclear ribonucleoprotein Sm D2 [Trichinella spiralis]
Length = 118
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/101 (64%), Positives = 86/101 (85%)
Query: 8 EDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
E+ + E E+F GPLSVL +V+ N+QVLI+CR+N+KL+ RV+AFDRHCNM+LENV+EM
Sbjct: 9 EELAQKETEDFEVGPLSVLTHAVRTNSQVLIDCRHNRKLIARVKAFDRHCNMILENVKEM 68
Query: 68 WTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
WTE+P+ GKG+K+ VNKDRFISKMFLRGD VI+V++NP+
Sbjct: 69 WTEIPRVGKGQKRGNAVNKDRFISKMFLRGDIVILVMKNPQ 109
>gi|195144664|ref|XP_002013316.1| GL23477 [Drosophila persimilis]
gi|194102259|gb|EDW24302.1| GL23477 [Drosophila persimilis]
Length = 124
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/90 (91%), Positives = 86/90 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 28 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 87
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 88 KKKVKPVNKDRFISKMFLRGDSVILVLRNP 117
>gi|119115655|ref|XP_318388.2| AGAP003936-PA [Anopheles gambiae str. PEST]
gi|116119487|gb|EAA13684.2| AGAP003936-PA [Anopheles gambiae str. PEST]
Length = 119
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/91 (89%), Positives = 87/91 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPRTGKG 82
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
KKK PVNKDRFISKMFLRGDSVI+VLRNP+
Sbjct: 83 KKKVKPVNKDRFISKMFLRGDSVILVLRNPQ 113
>gi|255564180|ref|XP_002523087.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus communis]
gi|223537649|gb|EEF39272.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus communis]
Length = 169
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/151 (56%), Positives = 93/151 (61%), Gaps = 53/151 (35%)
Query: 11 VKNEEEEFNTGPLSVLMMSVKNNTQV---------------------------------- 36
VKN+ EEF+TG LSVLMMSV+NNT++
Sbjct: 19 VKNKSEEFSTGSLSVLMMSVRNNTELGSYESGCNSPNTPLIYGPKFLAWLVKSTRLTWVC 78
Query: 37 ----------LINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE---------LPKTGKG 77
INCRNNKKLLGRVR FDRHCNMVLENVREMWTE +PKTGKG
Sbjct: 79 LPARLLLVLCSINCRNNKKLLGRVRTFDRHCNMVLENVREMWTEVYNYTLFIWVPKTGKG 138
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
KKKA PVNKDRFISKMFLRGDSVIIVLRNP+
Sbjct: 139 KKKAQPVNKDRFISKMFLRGDSVIIVLRNPE 169
>gi|148692587|gb|EDL24534.1| mCG49049 [Mus musculus]
Length = 118
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/100 (84%), Positives = 92/100 (92%)
Query: 8 EDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
E+ K EEEFNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14 EELQKRAEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73
Query: 68 WTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
WTE+PK+GKGKKK+ PVNKDR+ISKMFLRGD VI+VLRNP
Sbjct: 74 WTEVPKSGKGKKKSKPVNKDRYISKMFLRGDLVIVVLRNP 113
>gi|194899029|ref|XP_001979065.1| GG10522 [Drosophila erecta]
gi|190650768|gb|EDV48023.1| GG10522 [Drosophila erecta]
Length = 121
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/90 (91%), Positives = 86/90 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 25 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 84
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 85 KKKVKPVNKDRFISKMFLRGDSVILVLRNP 114
>gi|21357623|ref|NP_649645.1| small ribonucleoprotein particle protein SmD2 [Drosophila
melanogaster]
gi|195109364|ref|XP_001999257.1| GI23171 [Drosophila mojavensis]
gi|195343951|ref|XP_002038554.1| GM10560 [Drosophila sechellia]
gi|195568713|ref|XP_002102358.1| GD19551 [Drosophila simulans]
gi|390178314|ref|XP_001358903.3| GA11659 [Drosophila pseudoobscura pseudoobscura]
gi|33112452|sp|Q9VI10.1|SMD2_DROME RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|7298930|gb|AAF54135.1| small ribonucleoprotein particle protein SmD2 [Drosophila
melanogaster]
gi|17861966|gb|AAL39460.1| LD03002p [Drosophila melanogaster]
gi|193915851|gb|EDW14718.1| GI23171 [Drosophila mojavensis]
gi|194133575|gb|EDW55091.1| GM10560 [Drosophila sechellia]
gi|194198285|gb|EDX11861.1| GD19551 [Drosophila simulans]
gi|220952896|gb|ACL88991.1| snRNP2-PA [synthetic construct]
gi|388859402|gb|EAL28046.3| GA11659 [Drosophila pseudoobscura pseudoobscura]
Length = 119
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/90 (91%), Positives = 86/90 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 82
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 83 KKKVKPVNKDRFISKMFLRGDSVILVLRNP 112
>gi|444732316|gb|ELW72617.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 199
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/90 (85%), Positives = 84/90 (93%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGR +AFDRHCNM LENV+EMWTE+PK+GKG
Sbjct: 15 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRGKAFDRHCNMALENVKEMWTEVPKSGKG 74
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK PVNKDR+ISKMFLRGDSVI+VL+NP
Sbjct: 75 KKKFKPVNKDRYISKMFLRGDSVIVVLQNP 104
>gi|195453024|ref|XP_002073604.1| GK14204 [Drosophila willistoni]
gi|194169689|gb|EDW84590.1| GK14204 [Drosophila willistoni]
Length = 120
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/90 (91%), Positives = 86/90 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKVKPVNKDRFISKMFLRGDSVILVLRNP 113
>gi|157124529|ref|XP_001654090.1| small nuclear ribonucleoprotein sm d2 [Aedes aegypti]
gi|108873936|gb|EAT38161.1| AAEL009914-PA [Aedes aegypti]
Length = 119
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/91 (89%), Positives = 87/91 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKG 82
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
KKK PVNKDRFISKMFLRGDSVI+VLRNP+
Sbjct: 83 KKKVKPVNKDRFISKMFLRGDSVILVLRNPQ 113
>gi|195502267|ref|XP_002098148.1| GE24106 [Drosophila yakuba]
gi|194184249|gb|EDW97860.1| GE24106 [Drosophila yakuba]
Length = 123
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/90 (91%), Positives = 86/90 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 27 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 86
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 87 KKKVKPVNKDRFISKMFLRGDSVILVLRNP 116
>gi|195399858|ref|XP_002058536.1| GJ14487 [Drosophila virilis]
gi|194142096|gb|EDW58504.1| GJ14487 [Drosophila virilis]
Length = 125
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/90 (91%), Positives = 86/90 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 29 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 88
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 89 KKKVKPVNKDRFISKMFLRGDSVILVLRNP 118
>gi|225711330|gb|ACO11511.1| Probable small nuclear ribonucleoprotein Sm D2 [Caligus
rogercresseyi]
Length = 115
Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/90 (87%), Positives = 86/90 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKK LGRV+AFDRHCNMVLE+V+EMWTE+PKTGKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKPLGRVKAFDRHCNMVLESVKEMWTEMPKTGKG 82
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKKA PVNKDR+ISKMFLRGDS+I+VLRNP
Sbjct: 83 KKKAKPVNKDRYISKMFLRGDSIILVLRNP 112
>gi|312078721|ref|XP_003141861.1| small Nuclear Ribonucleoprotein family member [Loa loa]
gi|307762971|gb|EFO22205.1| small nuclear ribonucleoprotein Sm D2 [Loa loa]
Length = 121
Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/105 (80%), Positives = 92/105 (87%)
Query: 3 SRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 62
S +E+ E+EEFN GPLSVL SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLE
Sbjct: 9 SEMTQEELAAKEQEEFNVGPLSVLTQSVKNNAQVLINCRNNKKLLGRVKAFDRHCNMVLE 68
Query: 63 NVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
NV+EMWTELPKTGKGKKKA PV KDRFI+KMFLRGDSVIIVL+NP
Sbjct: 69 NVKEMWTELPKTGKGKKKAKPVAKDRFITKMFLRGDSVIIVLKNP 113
>gi|406866515|gb|EKD19555.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 106
Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 80/91 (87%), Gaps = 1/91 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF +GPLS+L +V+++TQVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 15 EEHEFTSGPLSILQTAVRSHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEAPK 74
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
T G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 75 TS-GGKKGRPVNKDRFISKMFLRGDSVILVL 104
>gi|320170085|gb|EFW46984.1| small nuclear ribonucleoprotein sm d2 [Capsaspora owczarzaki ATCC
30864]
Length = 118
Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 69/105 (65%), Positives = 85/105 (80%)
Query: 3 SRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 62
S+ E + ++E+EEF GPLSVL +V++N QV INCRNN+KLL RV+AFDRH NM+LE
Sbjct: 8 SQMSEAELAQHEKEEFEKGPLSVLTKAVRSNAQVFINCRNNRKLLARVKAFDRHFNMILE 67
Query: 63 NVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
+VRE WTE + GKGK K+ PVNKDRFISK+FLRGDSVII+L NP
Sbjct: 68 DVREFWTEGTRAGKGKTKSKPVNKDRFISKLFLRGDSVIIILPNP 112
>gi|222619939|gb|EEE56071.1| hypothetical protein OsJ_04893 [Oryza sativa Japonica Group]
Length = 104
Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/74 (94%), Positives = 73/74 (98%)
Query: 35 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 94
QVLINC+NNKKLLGRVRAFD HCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMF
Sbjct: 31 QVLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF 90
Query: 95 LRGDSVIIVLRNPK 108
LRGDSVIIVL+NPK
Sbjct: 91 LRGDSVIIVLKNPK 104
>gi|170594601|ref|XP_001902052.1| Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain. [Brugia malayi]
gi|158590996|gb|EDP29611.1| Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain., putative [Brugia malayi]
Length = 121
Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/105 (80%), Positives = 92/105 (87%)
Query: 3 SRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 62
S +E+ E+EEFN GPLSVL SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLE
Sbjct: 9 SEMTQEELAAKEQEEFNVGPLSVLTQSVKNNAQVLINCRNNKKLLGRVKAFDRHCNMVLE 68
Query: 63 NVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
NV+EMWTELPKTGKGKKKA PV KDRFI+KMFLRGDSVII+L+NP
Sbjct: 69 NVKEMWTELPKTGKGKKKAKPVAKDRFITKMFLRGDSVIIILKNP 113
>gi|167516090|ref|XP_001742386.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779010|gb|EDQ92624.1| predicted protein [Monosiga brevicollis MX1]
Length = 123
Score = 147 bits (372), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 75/101 (74%), Positives = 88/101 (87%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
+E+ K E++EF +GP+SVL SVK+NTQVLI CRNNKKLL RV+AFDRHCNMVLE V+E
Sbjct: 18 QEELEKIEQQEFESGPMSVLTQSVKSNTQVLIFCRNNKKLLARVKAFDRHCNMVLEQVKE 77
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
MWTE PK GKG+KK P+NKDRFISKMFLRGD+VI+VLRNP
Sbjct: 78 MWTETPKAGKGQKKKKPINKDRFISKMFLRGDTVILVLRNP 118
>gi|198434899|ref|XP_002127683.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 119
Score = 147 bits (372), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 77/90 (85%), Positives = 83/90 (92%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
F TGPLSVL SVKNNTQVLINCRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK+GKG
Sbjct: 24 FQTGPLSVLTDSVKNNTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK PVN+DRFISKMFLRGDSVIIVL+NP
Sbjct: 84 KKKQQPVNRDRFISKMFLRGDSVIIVLKNP 113
>gi|112143936|gb|ABI13177.1| putative small nuclear ribonucleoprotein d2 [Emiliania huxleyi]
Length = 110
Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/91 (89%), Positives = 86/91 (94%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
F+TGPLSVL SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK GKG
Sbjct: 20 FHTGPLSVLTQSVKSNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKKGKG 79
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
KKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 80 VKKAKPVNKDRFISKMFLRGDSVIIVLRNPK 110
>gi|112253319|gb|ABI14247.1| Sm-like protein [Pfiesteria piscicida]
gi|112253321|gb|ABI14248.1| small nuclear ribonucleoprotein D2-like protein [Pfiesteria
piscicida]
Length = 101
Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 87/106 (82%), Gaps = 9/106 (8%)
Query: 3 SRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 62
++P E+DN F+ GPLSVL VK+N+QVLINCRNN+K+L RV+AFDRH NMVLE
Sbjct: 5 AKPEEKDN-------FDVGPLSVLQKCVKDNSQVLINCRNNRKILARVKAFDRHSNMVLE 57
Query: 63 NVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
NVREMWTE+P GKKKA PVNKDRFI+K+FLRGDSVI+VLRNPK
Sbjct: 58 NVREMWTEVPHG--GKKKAKPVNKDRFITKLFLRGDSVILVLRNPK 101
>gi|170030740|ref|XP_001843246.1| small nuclear ribonucleoprotein sm d2 [Culex quinquefasciatus]
gi|167867922|gb|EDS31305.1| small nuclear ribonucleoprotein sm d2 [Culex quinquefasciatus]
Length = 119
Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 86/91 (94%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+ GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRAGKG 82
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
KKK PVNKDRFISKMFLRGDSVI+VLRNP+
Sbjct: 83 KKKVKPVNKDRFISKMFLRGDSVILVLRNPQ 113
>gi|402587026|gb|EJW80962.1| small nuclear ribonucleoprotein Sm D2 [Wuchereria bancrofti]
Length = 111
Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 83/101 (82%), Positives = 91/101 (90%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
+E+ E+EEFN GPLSVL SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+E
Sbjct: 3 QEELAAKEQEEFNVGPLSVLTQSVKNNAQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 62
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
MWTELPKTGKGKKKA PV KDRFI+KMFLRGDSVII+L+NP
Sbjct: 63 MWTELPKTGKGKKKAKPVAKDRFITKMFLRGDSVIIILKNP 103
>gi|325183558|emb|CCA18019.1| hypothetical protein SORBIDRAFT_06g022770 [Albugo laibachii Nc14]
Length = 110
Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/97 (76%), Positives = 86/97 (88%)
Query: 11 VKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 70
V+ EE+F GPLS+LM SVKNN+QVLIN RNN KLL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 12 VQENEEDFQKGPLSILMHSVKNNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTE 71
Query: 71 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
+PK+GKGKK PVNKDRF+SK+FLRGDSV++VLRNP
Sbjct: 72 VPKSGKGKKSGKPVNKDRFVSKLFLRGDSVVLVLRNP 108
>gi|444732321|gb|ELW72622.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 170
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/90 (84%), Positives = 83/90 (92%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGR +AFDRHCNM LENV+EMWTE+PK+GKG
Sbjct: 15 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRGKAFDRHCNMALENVKEMWTEVPKSGKG 74
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK PVNKDR+ISK FLRGDSVI+VL+NP
Sbjct: 75 KKKFKPVNKDRYISKKFLRGDSVIVVLQNP 104
>gi|134108164|ref|XP_777280.1| hypothetical protein CNBB2650 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259967|gb|EAL22633.1| hypothetical protein CNBB2650 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 165
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/93 (78%), Positives = 81/93 (87%), Gaps = 4/93 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E + GPLSVL SV+N++QVLI+ RNNKKLL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 75 EEYEISQGPLSVLQQSVRNSSQVLISLRNNKKLLARVKAFDRHCNMVLENVKEMWTETPK 134
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
GKGKK PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 135 -GKGKK---PVNKDRFISKMFLRGDSVILVLRN 163
>gi|225714876|gb|ACO13284.1| Small nuclear ribonucleoprotein Sm D2 [Esox lucius]
Length = 121
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/100 (83%), Positives = 92/100 (92%)
Query: 8 EDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
E+ K EEE FNTGPLSVL SVK+NTQVLINCRNNKKLLGRV+AF RHCNMVLENV+EM
Sbjct: 14 EELQKREEEGFNTGPLSVLTQSVKSNTQVLINCRNNKKLLGRVKAFGRHCNMVLENVKEM 73
Query: 68 WTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
WTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74 WTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|309264759|ref|XP_003086355.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Mus
musculus]
Length = 118
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/90 (84%), Positives = 84/90 (93%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRN KKLLGRV+AFDRHCNMVLENV+EMWTE+PK+ KG
Sbjct: 24 FNTGPLSVLSQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKD +ISK+FLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDCYISKIFLRGDSVIVVLRNP 113
>gi|58263220|ref|XP_569020.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|321249059|ref|XP_003191330.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
gi|57223670|gb|AAW41713.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
gi|317457797|gb|ADV19543.1| Pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
gi|405118541|gb|AFR93315.1| pre-mRNA splicing factor [Cryptococcus neoformans var. grubii H99]
Length = 111
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/93 (78%), Positives = 81/93 (87%), Gaps = 4/93 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E + GPLSVL SV+N++QVLI+ RNNKKLL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 21 EEYEISQGPLSVLQQSVRNSSQVLISLRNNKKLLARVKAFDRHCNMVLENVKEMWTETPK 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
GKGKK PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 81 -GKGKK---PVNKDRFISKMFLRGDSVILVLRN 109
>gi|63501063|ref|XP_619909.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Mus
musculus]
Length = 118
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/90 (84%), Positives = 84/90 (93%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRN KKLLGRV+AFDRHCNMVLENV+EMWTE+PK+ KG
Sbjct: 24 FNTGPLSVLSQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKD +ISK+FLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDCYISKIFLRGDSVIVVLRNP 113
>gi|430813655|emb|CCJ29007.1| unnamed protein product [Pneumocystis jirovecii]
Length = 114
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 80/93 (86%), Gaps = 1/93 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
E EF+TGPLSVL +V+N+ QVLI+CRNN+KLL RV+AFDRH NMVLENV+EMWTE P+
Sbjct: 21 EAYEFDTGPLSVLQQAVRNHNQVLISCRNNRKLLARVKAFDRHSNMVLENVKEMWTETPR 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
KG KK PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 81 NSKG-KKGKPVNKDRFISKMFLRGDSVILVLRN 112
>gi|57900175|dbj|BAD88260.1| putative small nuclear ribonucleoprotein [Oryza sativa Japonica
Group]
Length = 431
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 69/73 (94%), Positives = 72/73 (98%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
VLINC+NNKKLLGRVRAFD HCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFL
Sbjct: 359 VLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL 418
Query: 96 RGDSVIIVLRNPK 108
RGDSVIIVL+NPK
Sbjct: 419 RGDSVIIVLKNPK 431
>gi|403280870|ref|XP_003931930.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Saimiri
boliviensis boliviensis]
Length = 212
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/89 (84%), Positives = 83/89 (93%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+ KG
Sbjct: 25 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKG 84
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRN 106
KKK+ PVNKDR+ISKMFL G SVI+VL+N
Sbjct: 85 KKKSKPVNKDRYISKMFLCGGSVIVVLQN 113
>gi|403332734|gb|EJY65407.1| Small nuclear riboprotein Sm D2 [Oxytricha trifallax]
Length = 103
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/95 (73%), Positives = 83/95 (87%), Gaps = 1/95 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
+E+ F+ GPLS+L +VK N+QVL+NCRNN+KLLGRV+AFDRH NMVLENV EMWTE PK
Sbjct: 10 QEDTFHEGPLSLLTKAVKTNSQVLVNCRNNRKLLGRVKAFDRHMNMVLENVCEMWTETPK 69
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
KG KKA PVN++R+ISKMFLRGDSVIIV+RNPK
Sbjct: 70 PHKG-KKAHPVNRERYISKMFLRGDSVIIVIRNPK 103
>gi|17558868|ref|NP_506004.1| Protein SNR-4 [Caenorhabditis elegans]
gi|2833296|sp|Q18786.1|SMD2_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|3875190|emb|CAB01413.1| Protein SNR-4 [Caenorhabditis elegans]
Length = 118
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/100 (80%), Positives = 89/100 (89%)
Query: 8 EDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
E+ E+EEFN GPLS+L SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14 EELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73
Query: 68 WTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
WTE+PKTGKGKKKA V KDRFISKMFLRGDSVI+V++NP
Sbjct: 74 WTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
>gi|410909734|ref|XP_003968345.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Takifugu
rubripes]
Length = 124
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/90 (90%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 30 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 89
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVIIVLRNP
Sbjct: 90 KKKSKPVNKDRYISKMFLRGDSVIIVLRNP 119
>gi|229366980|gb|ACQ58470.1| Small nuclear ribonucleoprotein Sm D2 [Anoplopoma fimbria]
Length = 118
Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/90 (90%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVIIVLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIIVLRNP 113
>gi|341904454|gb|EGT60287.1| CBN-SNR-4 protein [Caenorhabditis brenneri]
Length = 118
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/100 (80%), Positives = 89/100 (89%)
Query: 8 EDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
E+ E+EEFN GPLS+L SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14 EELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73
Query: 68 WTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
WTE+PKTGKGKKKA V KDRFISKMFLRGDSVI+V++NP
Sbjct: 74 WTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
>gi|308503579|ref|XP_003113973.1| CRE-SNR-4 protein [Caenorhabditis remanei]
gi|308261358|gb|EFP05311.1| CRE-SNR-4 protein [Caenorhabditis remanei]
Length = 118
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/100 (80%), Positives = 89/100 (89%)
Query: 8 EDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
E+ E+EEFN GPLS+L SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14 EELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73
Query: 68 WTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
WTE+PKTGKGKKKA V KDRFISKMFLRGDSVI+V++NP
Sbjct: 74 WTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
>gi|402217994|gb|EJT98072.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 111
Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 71/93 (76%), Positives = 81/93 (87%), Gaps = 4/93 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E + GPLSVL SV+N+TQ+LI+ RNN+KLL RV+AFDRH NMVLENV+EMWTE+PK
Sbjct: 21 EEYEISQGPLSVLQQSVRNHTQILISLRNNRKLLARVKAFDRHTNMVLENVKEMWTEVPK 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
GKGKK PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 81 -GKGKK---PVNKDRFISKMFLRGDSVILVLRN 109
>gi|417408038|gb|JAA50593.1| Putative small nuclear ribonucleoprotein snrnp sm core protein,
partial [Desmodus rotundus]
Length = 140
Score = 144 bits (363), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 80/90 (88%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 46 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 105
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 106 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 135
>gi|345315929|ref|XP_001520002.2| PREDICTED: small nuclear ribonucleoprotein Sm D2-like
[Ornithorhynchus anatinus]
Length = 123
Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 80/90 (88%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 29 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 88
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 89 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 118
>gi|444730749|gb|ELW71123.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 149
Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 80/90 (88%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 55 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 114
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 115 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 144
>gi|432893287|ref|XP_004075904.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Oryzias
latipes]
Length = 118
Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 80/90 (88%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|4759158|ref|NP_004588.1| small nuclear ribonucleoprotein Sm D2 isoform 1 [Homo sapiens]
gi|58037145|ref|NP_081219.1| small nuclear ribonucleoprotein Sm D2 [Mus musculus]
gi|77735903|ref|NP_001029648.1| small nuclear ribonucleoprotein Sm D2 [Bos taurus]
gi|157820925|ref|NP_001102869.1| small nuclear ribonucleoprotein Sm D2 [Rattus norvegicus]
gi|302191671|ref|NP_001180521.1| small nuclear ribonucleoprotein Sm D2 [Macaca mulatta]
gi|318085119|ref|NP_001187657.1| small nuclear ribonucleoprotein sm d2 [Ictalurus punctatus]
gi|343887362|ref|NP_001230582.1| small nuclear ribonucleoprotein Sm D2 [Sus scrofa]
gi|356991224|ref|NP_001239341.1| small nuclear ribonucleoprotein Sm D2 [Canis lupus familiaris]
gi|149722210|ref|XP_001502799.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Equus
caballus]
gi|291414848|ref|XP_002723659.1| PREDICTED: small nuclear ribonucleoprotein D2 [Oryctolagus
cuniculus]
gi|296234130|ref|XP_002762293.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
gi|297705196|ref|XP_002829469.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Pongo abelii]
gi|301786280|ref|XP_002928550.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Ailuropoda
melanoleuca]
gi|327286749|ref|XP_003228092.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Anolis
carolinensis]
gi|334328787|ref|XP_001365173.2| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Monodelphis
domestica]
gi|344269659|ref|XP_003406666.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Loxodonta
africana]
gi|348557650|ref|XP_003464632.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cavia
porcellus]
gi|390465430|ref|XP_003733405.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
gi|397493317|ref|XP_003817554.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Pan
paniscus]
gi|397493319|ref|XP_003817555.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Pan
paniscus]
gi|397493321|ref|XP_003817556.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 3 [Pan
paniscus]
gi|397493323|ref|XP_003817557.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4 [Pan
paniscus]
gi|397493325|ref|XP_003817558.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 5 [Pan
paniscus]
gi|402905973|ref|XP_003915782.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Papio
anubis]
gi|403267451|ref|XP_003925846.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Saimiri
boliviensis boliviensis]
gi|403299046|ref|XP_003940303.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Saimiri
boliviensis boliviensis]
gi|410054097|ref|XP_003953576.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Pan troglodytes]
gi|410982696|ref|XP_003997684.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Felis
catus]
gi|426243035|ref|XP_004015372.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Ovis aries]
gi|426389216|ref|XP_004061020.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Gorilla
gorilla gorilla]
gi|426389218|ref|XP_004061021.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Gorilla
gorilla gorilla]
gi|426389220|ref|XP_004061022.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 3 [Gorilla
gorilla gorilla]
gi|441655899|ref|XP_004091080.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|441655902|ref|XP_004091081.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|441655911|ref|XP_004091083.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|51338666|sp|P62316.1|SMD2_HUMAN RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|59800293|sp|P62317.1|SMD2_MOUSE RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|109894870|sp|Q3SZF8.1|SMD2_BOVIN RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|6980599|pdb|1B34|B Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain
gi|225734043|pdb|3CW1|C Chain C, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734052|pdb|3CW1|P Chain P, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734061|pdb|3CW1|Q Chain Q, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734070|pdb|3CW1|R Chain R, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|315583603|pdb|3PGW|Y Chain Y, Crystal Structure Of Human U1 Snrnp
gi|315583612|pdb|3PGW|V Chain V, Crystal Structure Of Human U1 Snrnp
gi|332639435|pdb|2Y9A|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639442|pdb|2Y9A|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639449|pdb|2Y9A|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639459|pdb|2Y9B|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639466|pdb|2Y9B|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639473|pdb|2Y9B|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639483|pdb|2Y9C|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639490|pdb|2Y9C|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639497|pdb|2Y9C|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639507|pdb|2Y9D|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639514|pdb|2Y9D|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639521|pdb|2Y9D|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|343781211|pdb|3S6N|B Chain B, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
gi|444302197|pdb|4F7U|B Chain B, Macromolecular Machine 6
gi|444302199|pdb|4F7U|D Chain D, Macromolecular Machine 6
gi|453055423|pdb|1VU2|B Chain B, The 8s Snrnp Assembly Intermediate
gi|453055431|pdb|1VU2|J Chain J, The 8s Snrnp Assembly Intermediate
gi|453055439|pdb|1VU2|R Chain R, The 8s Snrnp Assembly Intermediate
gi|453055447|pdb|1VU2|Z Chain Z, The 8s Snrnp Assembly Intermediate
gi|453055455|pdb|1VU2|HH Chain h, The 8s Snrnp Assembly Intermediate
gi|453055463|pdb|1VU2|PP Chain p, The 8s Snrnp Assembly Intermediate
gi|453055475|pdb|1VU2|XX Chain x, The 8s Snrnp Assembly Intermediate
gi|453055479|pdb|1VU3|B Chain B, The 8s Snrnp Assembly Intermediate
gi|453055487|pdb|1VU3|J Chain J, The 8s Snrnp Assembly Intermediate
gi|453055495|pdb|1VU3|R Chain R, The 8s Snrnp Assembly Intermediate
gi|453055503|pdb|1VU3|Z Chain Z, The 8s Snrnp Assembly Intermediate
gi|453055511|pdb|1VU3|HH Chain h, The 8s Snrnp Assembly Intermediate
gi|453055519|pdb|1VU3|PP Chain p, The 8s Snrnp Assembly Intermediate
gi|453056011|pdb|4F77|J Chain J, The 8s Snrnp Assembly Intermediate
gi|453056019|pdb|4F77|B Chain B, The 8s Snrnp Assembly Intermediate
gi|453056027|pdb|4F77|R Chain R, The 8s Snrnp Assembly Intermediate
gi|453056035|pdb|4F77|Z Chain Z, The 8s Snrnp Assembly Intermediate
gi|453056043|pdb|4F77|HH Chain h, The 8s Snrnp Assembly Intermediate
gi|453056051|pdb|4F77|PP Chain p, The 8s Snrnp Assembly Intermediate
gi|453056063|pdb|4F77|XX Chain x, The 8s Snrnp Assembly Intermediate
gi|4558644|gb|AAD22673.1|AC007191_1 SMD2_HUMAN [Homo sapiens]
gi|600748|gb|AAC13776.1| Sm D2 [Homo sapiens]
gi|12653431|gb|AAH00486.1| Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Homo
sapiens]
gi|12804955|gb|AAH01930.1| Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Homo
sapiens]
gi|12840909|dbj|BAB25006.1| unnamed protein product [Mus musculus]
gi|26353034|dbj|BAC40147.1| unnamed protein product [Mus musculus]
gi|27696661|gb|AAH43014.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|30109280|gb|AAH51208.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|74354236|gb|AAI02878.1| Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Bos taurus]
gi|109734134|gb|AAI16859.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|109734137|gb|AAI16861.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|119577777|gb|EAW57373.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa, isoform
CRA_a [Homo sapiens]
gi|123980686|gb|ABM82172.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [synthetic
construct]
gi|123995513|gb|ABM85358.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [synthetic
construct]
gi|148691165|gb|EDL23112.1| mCG4862 [Mus musculus]
gi|149056801|gb|EDM08232.1| rCG54604 [Rattus norvegicus]
gi|158257256|dbj|BAF84601.1| unnamed protein product [Homo sapiens]
gi|197245986|gb|AAI68781.1| Small nuclear ribonucleoprotein D2 [Rattus norvegicus]
gi|208967434|dbj|BAG73731.1| small nuclear ribonucleoprotein D2 polypeptide [synthetic
construct]
gi|296477468|tpg|DAA19583.1| TPA: small nuclear ribonucleoprotein Sm D2 [Bos taurus]
gi|308323619|gb|ADO28945.1| small nuclear ribonucleoprotein sm d2 [Ictalurus punctatus]
gi|383412347|gb|AFH29387.1| small nuclear ribonucleoprotein Sm D2 isoform 1 [Macaca mulatta]
gi|387018126|gb|AFJ51181.1| Small nuclear ribonucleoprotein Sm D2 [Crotalus adamanteus]
gi|387542088|gb|AFJ71671.1| small nuclear ribonucleoprotein Sm D2 isoform 1 [Macaca mulatta]
gi|410291960|gb|JAA24580.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Pan
troglodytes]
gi|410332637|gb|JAA35265.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Pan
troglodytes]
Length = 118
Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 80/90 (88%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|348508217|ref|XP_003441651.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Oreochromis
niloticus]
Length = 118
Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 80/90 (88%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|60834798|gb|AAX37111.1| small nuclear ribonucleoprotein D2 polypeptide [synthetic
construct]
Length = 119
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 80/90 (88%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|281348790|gb|EFB24374.1| hypothetical protein PANDA_018526 [Ailuropoda melanoleuca]
gi|355703667|gb|EHH30158.1| hypothetical protein EGK_10765, partial [Macaca mulatta]
gi|440902304|gb|ELR53111.1| Small nuclear ribonucleoprotein Sm D2, partial [Bos grunniens
mutus]
Length = 117
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 80/90 (88%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 82
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 83 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 112
>gi|62955141|ref|NP_001017582.1| small nuclear ribonucleoprotein Sm D2 [Danio rerio]
gi|62204867|gb|AAH93003.1| Si:dkey-113g17.2 [Danio rerio]
gi|169145930|emb|CAQ13816.1| novel protein similar to vertebrate small nuclear ribonucleoprotein
D2 polypeptide 16.5kDa (SNRPD2) [Danio rerio]
gi|225706716|gb|ACO09204.1| Small nuclear ribonucleoprotein Sm D2 [Osmerus mordax]
Length = 118
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 80/90 (88%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|52346166|ref|NP_001005128.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
(Silurana) tropicalis]
gi|50417589|gb|AAH77664.1| MGC89748 protein [Xenopus (Silurana) tropicalis]
gi|89272067|emb|CAJ81304.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
(Silurana) tropicalis]
gi|170285025|gb|AAI61312.1| MGC89748 protein [Xenopus (Silurana) tropicalis]
Length = 118
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 80/90 (88%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|354486715|ref|XP_003505524.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cricetulus
griseus]
Length = 139
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 74/89 (83%), Positives = 82/89 (92%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+ KG
Sbjct: 45 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSDKG 104
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRN 106
KKK+ P+NK +ISKMFL GDSVI+VLRN
Sbjct: 105 KKKSKPINKGHYISKMFLSGDSVIVVLRN 133
>gi|291290931|ref|NP_001167498.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
laevis]
gi|57032687|gb|AAH88924.1| Unknown (protein for MGC:85085) [Xenopus laevis]
Length = 118
Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/90 (88%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|431909174|gb|ELK12764.1| Small nuclear ribonucleoprotein Sm D2 [Pteropus alecto]
Length = 138
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/90 (88%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 44 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 103
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 104 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 133
>gi|395334237|gb|EJF66613.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 111
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/93 (77%), Positives = 80/93 (86%), Gaps = 4/93 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E + GPLSVL +V+N+TQVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTELPK
Sbjct: 21 EEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTELPK 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
GK KK PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 81 -GKNKK---PVNKDRFISKMFLRGDSVILVLRN 109
>gi|237649049|ref|NP_808210.2| small nuclear ribonucleoprotein Sm D2 isoform 2 [Homo sapiens]
gi|332257074|ref|XP_003277641.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4
[Nomascus leucogenys]
gi|332257076|ref|XP_003277642.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 5
[Nomascus leucogenys]
gi|332856260|ref|XP_001166252.2| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4 [Pan
troglodytes]
gi|395854166|ref|XP_003799569.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Otolemur
garnettii]
gi|397493327|ref|XP_003817559.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 6 [Pan
paniscus]
gi|402905975|ref|XP_003915783.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Papio
anubis]
gi|410054100|ref|XP_003953577.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Pan troglodytes]
gi|410982698|ref|XP_003997685.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Felis
catus]
gi|426389224|ref|XP_004061024.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 5 [Gorilla
gorilla gorilla]
gi|426389226|ref|XP_004061025.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 6 [Gorilla
gorilla gorilla]
gi|441655907|ref|XP_004091082.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|119577778|gb|EAW57374.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa, isoform
CRA_b [Homo sapiens]
gi|351697916|gb|EHB00835.1| Small nuclear ribonucleoprotein Sm D2 [Heterocephalus glaber]
gi|432101631|gb|ELK29680.1| Small nuclear ribonucleoprotein Sm D2 [Myotis davidii]
Length = 108
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/90 (88%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 14 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 73
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 103
>gi|344249248|gb|EGW05352.1| Small nuclear ribonucleoprotein Sm D2 [Cricetulus griseus]
Length = 108
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/89 (83%), Positives = 82/89 (92%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+ KG
Sbjct: 14 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSDKG 73
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRN 106
KKK+ P+NK +ISKMFL GDSVI+VLRN
Sbjct: 74 KKKSKPINKGHYISKMFLSGDSVIVVLRN 102
>gi|225704668|gb|ACO08180.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/90 (87%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVL+NCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|426389222|ref|XP_004061023.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4 [Gorilla
gorilla gorilla]
Length = 136
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/90 (88%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 42 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 101
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 102 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 131
>gi|209731722|gb|ACI66730.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209733910|gb|ACI67824.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209737798|gb|ACI69768.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209738154|gb|ACI69946.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|225704008|gb|ACO07850.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
gi|225705510|gb|ACO08601.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
gi|303663493|gb|ADM16106.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 118
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/90 (87%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVL+NCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|225704522|gb|ACO08107.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/90 (87%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVL+NCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|395529567|ref|XP_003766882.1| PREDICTED: uncharacterized protein LOC100930002 [Sarcophilus
harrisii]
Length = 242
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/90 (87%), Positives = 86/90 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 148 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 207
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKD +ISKMFLRGDSVI+VLRNP
Sbjct: 208 KKKSKPVNKDHYISKMFLRGDSVIVVLRNP 237
>gi|294882885|ref|XP_002769869.1| Small nuclear ribonucleoprotein Sm D2, putative [Perkinsus marinus
ATCC 50983]
gi|239873682|gb|EER02587.1| Small nuclear ribonucleoprotein Sm D2, putative [Perkinsus marinus
ATCC 50983]
Length = 110
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/93 (73%), Positives = 81/93 (87%), Gaps = 3/93 (3%)
Query: 16 EEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTG 75
++F TGPLS+L + + N+QVLINCRNN+K+LGRV+AFDRH NMVLENVRE+WTE+PK G
Sbjct: 18 DKFETGPLSLLTKACEENSQVLINCRNNRKILGRVKAFDRHFNMVLENVRELWTEVPKGG 77
Query: 76 KGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
KK PVNKDRF+SKMFLRGDSVI+VLRNPK
Sbjct: 78 SNKK---PVNKDRFVSKMFLRGDSVIMVLRNPK 107
>gi|221221306|gb|ACM09314.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 121
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/90 (87%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVL+NCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|308322523|gb|ADO28399.1| small nuclear ribonucleoprotein sm d2 [Ictalurus furcatus]
Length = 123
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/90 (88%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 29 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 88
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 89 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 118
>gi|324546471|gb|ADY49713.1| Small nuclear ribonucleoprotein Sm D2, partial [Ascaris suum]
Length = 120
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/101 (80%), Positives = 91/101 (90%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
+E+ E+EEFN GPLS+L SVKNN QV+INCRNN+KLLGRV+AFDRHCNMVLENV+E
Sbjct: 13 QEELQAKEQEEFNVGPLSILTQSVKNNAQVMINCRNNRKLLGRVKAFDRHCNMVLENVKE 72
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
MWTELPKTGKGKKKA PV KDRFISKMFLRGDSVI+VL+NP
Sbjct: 73 MWTELPKTGKGKKKAKPVAKDRFISKMFLRGDSVILVLKNP 113
>gi|409083385|gb|EKM83742.1| hypothetical protein AGABI1DRAFT_124072 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 111
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/93 (76%), Positives = 80/93 (86%), Gaps = 4/93 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E + GPLSVL +V+N+TQVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK
Sbjct: 21 EEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEIPK 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
GK KK PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 81 -GKNKK---PVNKDRFISKMFLRGDSVILVLRN 109
>gi|225703700|gb|ACO07696.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/90 (86%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVL+NCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR++SKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYVSKMFLRGDSVIVVLRNP 113
>gi|440635668|gb|ELR05587.1| small nuclear ribonucleoprotein D2 [Geomyces destructans 20631-21]
Length = 118
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 79/91 (86%), Gaps = 1/91 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
E+ EF +GPLS+L +V++++QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE P+
Sbjct: 27 EQHEFTSGPLSILQTAVRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 86
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 87 LA-GGKKGRPVNKDRFISKMFLRGDSVILVL 116
>gi|407927523|gb|EKG20414.1| hypothetical protein MPH_02260 [Macrophomina phaseolina MS6]
Length = 118
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/98 (69%), Positives = 81/98 (82%), Gaps = 1/98 (1%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
E + + EE EF +GPLS+L +V+++TQVLI+CRNN+KLL RV+AFDRHCNMVLENV+E
Sbjct: 20 EYEIAQLEEHEFTSGPLSLLQTAVRSHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKE 79
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
MWTE PK G K PVNKDRFISKMFLRGDSVI+VL
Sbjct: 80 MWTEKPKLANG-KPGRPVNKDRFISKMFLRGDSVILVL 116
>gi|225704396|gb|ACO08044.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/90 (86%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVL+NCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR++SKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYVSKMFLRGDSVIVVLRNP 113
>gi|453086972|gb|EMF15013.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 121
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 79/91 (86%), Gaps = 1/91 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
E EF +GPLS+L +V+ +TQVLI+CRNN+KLLGRV+AFDRHCNMVLENV+EMW+E P+
Sbjct: 30 ETHEFTSGPLSLLQTAVRQHTQVLISCRNNRKLLGRVKAFDRHCNMVLENVKEMWSETPR 89
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
T GKK + VNKDRFISKMFLRGDSVI+VL
Sbjct: 90 TSDGKKGRV-VNKDRFISKMFLRGDSVILVL 119
>gi|449302285|gb|EMC98294.1| hypothetical protein BAUCODRAFT_146847 [Baudoinia compniacensis
UAMH 10762]
Length = 119
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 78/91 (85%), Gaps = 1/91 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
E EF +GPLS+L +V+N+TQVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE P+
Sbjct: 28 ETHEFTSGPLSLLQTAVRNHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 87
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
G K+ PVNKDRFISKMFLRGDSVI+VL
Sbjct: 88 LTDG-KRGRPVNKDRFISKMFLRGDSVILVL 117
>gi|71021395|ref|XP_760928.1| hypothetical protein UM04781.1 [Ustilago maydis 521]
gi|46101003|gb|EAK86236.1| hypothetical protein UM04781.1 [Ustilago maydis 521]
gi|343426204|emb|CBQ69735.1| probable small nuclear ribonucleoprotein chain D2 [Sporisorium
reilianum SRZ2]
gi|443900125|dbj|GAC77452.1| 17 beta-hydroxysteroid dehydrogenase type 3 [Pseudozyma antarctica
T-34]
Length = 111
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 80/93 (86%), Gaps = 4/93 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
E+ E + GPLSVL SV+N+TQ+LI RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK
Sbjct: 21 EQYEISQGPLSVLQQSVRNHTQILIALRNNKKLLARVKAFDRHSNMVLENVKEMWTEVPK 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
GKGKK PVNKDRFISKMFLRGDSV++VLRN
Sbjct: 81 -GKGKK---PVNKDRFISKMFLRGDSVVLVLRN 109
>gi|26337731|dbj|BAC32551.1| unnamed protein product [Mus musculus]
Length = 118
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/90 (87%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLS+L SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSMLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|330793131|ref|XP_003284639.1| hypothetical protein DICPUDRAFT_86347 [Dictyostelium purpureum]
gi|325085438|gb|EGC38845.1| hypothetical protein DICPUDRAFT_86347 [Dictyostelium purpureum]
Length = 116
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/91 (82%), Positives = 84/91 (92%)
Query: 17 EFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGK 76
++ GPLS+LM SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTE+PKT K
Sbjct: 18 DYEKGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAK 77
Query: 77 GKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
GKKKA P+NKDRFISKMFLRGDSVI+VL+NP
Sbjct: 78 GKKKAKPINKDRFISKMFLRGDSVILVLKNP 108
>gi|388857230|emb|CCF49243.1| probable small nuclear ribonucleoprotein chain D2 [Ustilago hordei]
Length = 111
Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 80/93 (86%), Gaps = 4/93 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
E+ E + GPLSVL SV+N+TQ+LI RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK
Sbjct: 21 EQYEISQGPLSVLQQSVRNHTQILIALRNNKKLLARVKAFDRHSNMVLENVKEMWTEVPK 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
GKGKK PVNKDRFISKMFLRGDSV++VLRN
Sbjct: 81 -GKGKK---PVNKDRFISKMFLRGDSVVLVLRN 109
>gi|225715792|gb|ACO13742.1| Small nuclear ribonucleoprotein Sm D2 [Esox lucius]
Length = 121
Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/90 (87%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVK+NTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKSNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|452985934|gb|EME85690.1| hypothetical protein MYCFIDRAFT_82569 [Pseudocercospora fijiensis
CIRAD86]
Length = 122
Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 78/91 (85%), Gaps = 1/91 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
E EF +GPLS+L +V+ +TQVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE+P+
Sbjct: 31 ETHEFTSGPLSLLQTAVRQHTQVLISCRNNRKLLCRVKAFDRHCNMVLENVKEMWTEIPR 90
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 91 LADG-KKGRPVNKDRFISKMFLRGDSVILVL 120
>gi|389739270|gb|EIM80464.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 111
Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 80/93 (86%), Gaps = 4/93 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E + GPLSVL +V+N+TQVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK
Sbjct: 21 EEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEIPK 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
GK KK PVNKDRFISKMFLRGDSVI++LRN
Sbjct: 81 -GKNKK---PVNKDRFISKMFLRGDSVILILRN 109
>gi|389644410|ref|XP_003719837.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae 70-15]
gi|351639606|gb|EHA47470.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae 70-15]
gi|440470057|gb|ELQ39146.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae Y34]
gi|440490054|gb|ELQ69649.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae P131]
Length = 117
Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/98 (68%), Positives = 81/98 (82%), Gaps = 1/98 (1%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
E + + EE EF+ GPLS+L +V+++TQVLI+ RNN+KLL RV+AFDRHCNMVLENV+E
Sbjct: 19 EYEIAQLEEHEFSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKE 78
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
MWTE P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 79 MWTETPRLASG-KKGRPVNKDRFISKMFLRGDSVILVL 115
>gi|237858781|ref|NP_001153822.1| small nuclear ribonucleoprotein D2-like [Acyrthosiphon pisum]
gi|193606141|ref|XP_001943704.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Acyrthosiphon pisum]
gi|54287930|gb|AAV31412.1| putative small nuclear ribonucleoprotein D2-like protein [Toxoptera
citricida]
gi|239790582|dbj|BAH71844.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790584|dbj|BAH71845.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790586|dbj|BAH71846.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790588|dbj|BAH71847.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790590|dbj|BAH71848.1| ACYPI003451 [Acyrthosiphon pisum]
Length = 125
Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/91 (80%), Positives = 85/91 (93%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
F TGP+SVL SV+NNTQVLINCRNN+KLL R++AFDRHCNMVLENVREMWTELPKTGKG
Sbjct: 25 FTTGPMSVLTQSVRNNTQVLINCRNNRKLLARIKAFDRHCNMVLENVREMWTELPKTGKG 84
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
KKKA V++D++ISKMFLRGDSVI+V++NPK
Sbjct: 85 KKKAKAVSRDKYISKMFLRGDSVILVVKNPK 115
>gi|452846138|gb|EME48071.1| hypothetical protein DOTSEDRAFT_21783 [Dothistroma septosporum
NZE10]
Length = 121
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 78/91 (85%), Gaps = 1/91 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
E+ EF +GPLS+L +V+ +TQVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE+P+
Sbjct: 30 EQHEFTSGPLSLLQTAVRQHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEIPR 89
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
G KK VNKDRFISKMFLRGDSVI+VL
Sbjct: 90 LADG-KKGRAVNKDRFISKMFLRGDSVILVL 119
>gi|209738048|gb|ACI69893.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|221220052|gb|ACM08687.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|221221714|gb|ACM09518.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|303664033|gb|ADM16126.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 121
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/90 (86%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVK+NTQVL+NCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKSNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|66809065|ref|XP_638255.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74853875|sp|Q54NC5.1|SMD2_DICDI RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|60466721|gb|EAL64772.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 112
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/102 (75%), Positives = 92/102 (90%), Gaps = 1/102 (0%)
Query: 6 MEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 65
M ++ ++++ ++ N GPLS+LM SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLENV+
Sbjct: 4 MNDETMEDKPDDSN-GPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVK 62
Query: 66 EMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
E+WTE+PKT KGKKKA P+NKDRFISKMFLRGDSVI+VL+NP
Sbjct: 63 EIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 104
>gi|310794394|gb|EFQ29855.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 118
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 78/91 (85%), Gaps = 1/91 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF+ GPLS+L +V+++TQVLI+ RNN+KLL RV+AFDRHCNMVLENV+EMWTE P+
Sbjct: 27 EEHEFSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 86
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 87 LANG-KKGRPVNKDRFISKMFLRGDSVILVL 116
>gi|388583928|gb|EIM24229.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 111
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 80/93 (86%), Gaps = 4/93 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E + GPLSVL SVKNNTQ+L++ RNN+KLL RV+AFDRH NMVLENV+EMWTE PK
Sbjct: 21 EEFELSQGPLSVLQQSVKNNTQILVSLRNNRKLLARVKAFDRHSNMVLENVKEMWTETPK 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
GKGK+ P+NKDRFISKMFLRGDSVI+VLRN
Sbjct: 81 -GKGKQ---PINKDRFISKMFLRGDSVILVLRN 109
>gi|380476129|emb|CCF44882.1| small nuclear ribonucleoprotein Sm D2 [Colletotrichum higginsianum]
Length = 118
Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 78/91 (85%), Gaps = 1/91 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF+ GPLS+L +V+++TQVLI+ RNN+KLL RV+AFDRHCNMVLENV+EMWTE P+
Sbjct: 27 EEHEFSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 86
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 87 LANG-KKGRPVNKDRFISKMFLRGDSVILVL 116
>gi|213405485|ref|XP_002173514.1| small nuclear ribonucleoprotein Sm D2 [Schizosaccharomyces
japonicus yFS275]
gi|212001561|gb|EEB07221.1| small nuclear ribonucleoprotein Sm D2 [Schizosaccharomyces
japonicus yFS275]
Length = 114
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 79/94 (84%), Gaps = 1/94 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF++GPLSVL +VKN+ QVLINCRNNKKLL RV+AFDRH NMVLENV+EMWTE K
Sbjct: 21 EEYEFSSGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTERRK 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
T G KK P+N+DRFISKMFLRGD V++V+R P
Sbjct: 81 TSSG-KKGKPINRDRFISKMFLRGDGVVLVVRIP 113
>gi|393247820|gb|EJD55327.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 111
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 80/93 (86%), Gaps = 4/93 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E + GPLSVL +V+N+TQVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK
Sbjct: 21 EEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHTNMVLENVKEMWTEVPK 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
GK KK PVNKDRFISKMFLRGDSV++VLRN
Sbjct: 81 -GKNKK---PVNKDRFISKMFLRGDSVVLVLRN 109
>gi|398391274|ref|XP_003849097.1| small nuclear ribonucleoprotein Sm D2 [Zymoseptoria tritici IPO323]
gi|339468973|gb|EGP84073.1| hypothetical protein MYCGRDRAFT_101457 [Zymoseptoria tritici
IPO323]
Length = 122
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 78/91 (85%), Gaps = 1/91 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
E EF +GPLS+L +V+N+ QVLI+CRNN+K+L RV+AFDRHCNMVLENV+EMWTE+P+
Sbjct: 31 ETHEFTSGPLSLLQTAVRNHAQVLISCRNNRKMLARVKAFDRHCNMVLENVKEMWTEVPR 90
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 91 LTDG-KKGRPVNKDRFISKMFLRGDSVILVL 120
>gi|225704950|gb|ACO08321.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/90 (85%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVL+NCRNNK+LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKELLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDS+I+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSIIVVLRNP 113
>gi|353237783|emb|CCA69748.1| probable small nuclear ribonucleoprotein chain D2 [Piriformospora
indica DSM 11827]
Length = 122
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 79/93 (84%), Gaps = 4/93 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E + GPLSVL SV+N+TQ+LI+ RNN+KLL RV+AFDRH NMVLENV+EMWTE P
Sbjct: 32 EEHEISQGPLSVLQQSVRNHTQILISLRNNRKLLARVKAFDRHSNMVLENVKEMWTETP- 90
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
+GK KK PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 91 SGKNKK---PVNKDRFISKMFLRGDSVILVLRN 120
>gi|225705318|gb|ACO08505.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 111
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 78/90 (86%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVK+NTQVL+NCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 14 FNTGPLSVLTQSVKSNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 73
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 103
>gi|429861913|gb|ELA36576.1| small nuclear ribonucleoprotein sm d2 [Colletotrichum
gloeosporioides Nara gc5]
Length = 118
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/98 (68%), Positives = 81/98 (82%), Gaps = 1/98 (1%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
E + + EE EF+ GPLS+L +V+++TQVLI+ RNN+KLL RV+AFDRHCNMVLENV+E
Sbjct: 20 EYEIAQLEEHEFSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKE 79
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
MWTE P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 80 MWTETPRLANG-KKGRPVNKDRFISKMFLRGDSVILVL 116
>gi|296213417|ref|XP_002753261.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
Length = 118
Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/89 (88%), Positives = 86/89 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRN 106
KKK+ PVNKDR+ISKMFLRGDSVI+VLRN
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRN 112
>gi|296204251|ref|XP_002749249.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
Length = 118
Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 78/90 (86%), Positives = 86/90 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGR +AFDRHCNMVLEN++EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRAKAFDRHCNMVLENMKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|109085944|ref|XP_001108236.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
Length = 118
Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/90 (87%), Positives = 86/90 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNT PLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTSPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|403288352|ref|XP_003935370.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 1
[Saimiri boliviensis boliviensis]
gi|403288354|ref|XP_003935371.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 2
[Saimiri boliviensis boliviensis]
Length = 145
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/90 (86%), Positives = 86/90 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AF+RHCNMVLENV+E WTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFNRHCNMVLENVKETWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|340517487|gb|EGR47731.1| predicted protein [Trichoderma reesei QM6a]
gi|358388581|gb|EHK26174.1| hypothetical protein TRIVIDRAFT_35950 [Trichoderma virens Gv29-8]
Length = 117
Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 66/98 (67%), Positives = 82/98 (83%), Gaps = 1/98 (1%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
E + + EE EF++GPLS+L +V+++TQVLI+ R+N+KLL RV+AFDRHCNMVLENV+E
Sbjct: 19 EYEIAQLEEYEFSSGPLSILQTAVRSHTQVLISIRSNRKLLARVKAFDRHCNMVLENVKE 78
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
MWTE P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 79 MWTETPRLADG-KKGRPVNKDRFISKMFLRGDSVILVL 115
>gi|242221237|ref|XP_002476371.1| predicted protein [Postia placenta Mad-698-R]
gi|220724376|gb|EED78423.1| predicted protein [Postia placenta Mad-698-R]
Length = 111
Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 80/93 (86%), Gaps = 4/93 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E + GPLSVL +V+N+TQVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK
Sbjct: 21 EEFEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEMPK 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
GK KK PVNKDRFISKMFLRGDSVI++LRN
Sbjct: 81 -GKNKK---PVNKDRFISKMFLRGDSVILILRN 109
>gi|109131908|ref|XP_001099573.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
Length = 118
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/90 (87%), Positives = 86/90 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLR DSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRRDSVIVVLRNP 113
>gi|239788764|dbj|BAH71046.1| ACYPI003451 [Acyrthosiphon pisum]
Length = 125
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/91 (80%), Positives = 84/91 (92%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
F TGP+SVL SV+NNTQVLINCRNN+KLL R++AFDRHCNMVLENVREMWTELPKTGKG
Sbjct: 25 FTTGPMSVLTQSVRNNTQVLINCRNNRKLLARIKAFDRHCNMVLENVREMWTELPKTGKG 84
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
KKKA V++D++ISKMFLRGDSVI+V+ NPK
Sbjct: 85 KKKAKAVSRDKYISKMFLRGDSVILVVMNPK 115
>gi|225709580|gb|ACO10636.1| Small nuclear ribonucleoprotein Sm D2 [Caligus rogercresseyi]
Length = 121
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/90 (85%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVK+NTQVL+NCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKSNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVN+DR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNRDRYISKMFLRGDSVIVVLRNP 113
>gi|225704758|gb|ACO08225.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/90 (85%), Positives = 86/90 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVL+NCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR++SKMF RGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYVSKMFQRGDSVIVVLRNP 113
>gi|170084079|ref|XP_001873263.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650815|gb|EDR15055.1| predicted protein [Laccaria bicolor S238N-H82]
gi|336377064|gb|EGO05399.1| hypothetical protein SERLA73DRAFT_174539 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390107|gb|EGO31250.1| hypothetical protein SERLADRAFT_456135 [Serpula lacrymans var.
lacrymans S7.9]
Length = 111
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 79/93 (84%), Gaps = 4/93 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E + GPLSVL +V+N+ QVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK
Sbjct: 21 EEHEISQGPLSVLQQAVRNHAQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEVPK 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
GK KK PVNKDRFISKMFLRGDSVI++LRN
Sbjct: 81 -GKNKK---PVNKDRFISKMFLRGDSVILILRN 109
>gi|358392303|gb|EHK41707.1| hypothetical protein TRIATDRAFT_30322 [Trichoderma atroviride IMI
206040]
Length = 117
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/98 (67%), Positives = 82/98 (83%), Gaps = 1/98 (1%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
E + + EE EF++GPLS+L +V+++TQVLI+ R+N+KLL RV+AFDRHCNMVLENV+E
Sbjct: 19 EYEIAQLEEYEFSSGPLSILQTAVRSHTQVLISIRSNRKLLARVKAFDRHCNMVLENVKE 78
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
MWTE P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 79 MWTETPRLADG-KKGRPVNKDRFISKMFLRGDSVILVL 115
>gi|392571577|gb|EIW64749.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 111
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 79/93 (84%), Gaps = 4/93 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E + GPLSVL +V+N+TQVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK
Sbjct: 21 EEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEMPK 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
GK KK VNKDRFISKMFLRGDSVI+VLRN
Sbjct: 81 -GKNKK---AVNKDRFISKMFLRGDSVILVLRN 109
>gi|340368003|ref|XP_003382542.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Amphimedon queenslandica]
Length = 119
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/90 (84%), Positives = 83/90 (92%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLS+L SVK NTQVLINCRNN+KLL RV+AFDRH NMVLENV+EMWTE PKTGKG
Sbjct: 23 FNTGPLSLLTQSVKYNTQVLINCRNNRKLLARVKAFDRHFNMVLENVKEMWTETPKTGKG 82
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKKA PVNKDRFI+KMF+RGDSVI+VLRNP
Sbjct: 83 KKKARPVNKDRFIAKMFIRGDSVILVLRNP 112
>gi|298710498|emb|CBJ25562.1| small nuclear ribonucleoprotein D2-like protein [Ectocarpus
siliculosus]
Length = 82
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/81 (79%), Positives = 73/81 (90%)
Query: 27 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 86
M SVKNNTQVLIN RNN KLL R++AFDRHCNMVL +V+EMWTE PKTGKG+KKA VNK
Sbjct: 1 MQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNK 60
Query: 87 DRFISKMFLRGDSVIIVLRNP 107
DR++SKMFLRGDSV++VLRNP
Sbjct: 61 DRYVSKMFLRGDSVVLVLRNP 81
>gi|19115418|ref|NP_594506.1| Sm snRNP core protein Smd2 [Schizosaccharomyces pombe 972h-]
gi|12230558|sp|O14036.1|SMD2_SCHPO RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=Complexed with cdc5 protein 9; AltName:
Full=snRNP core protein D2
gi|2414614|emb|CAB16363.1| Sm snRNP core protein Smd2 [Schizosaccharomyces pombe]
Length = 115
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/94 (71%), Positives = 77/94 (81%), Gaps = 1/94 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF+ GPLSVL +VKN+ QVLINCRNNKKLL RV+AFDRH NMVLENV+EMWTE +
Sbjct: 21 EEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKR 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
T G KK +NKDRFISKMFLRGD V++V+R P
Sbjct: 81 TASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113
>gi|331242627|ref|XP_003333959.1| small nuclear ribonucleoprotein Sm D2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309312949|gb|EFP89540.1| small nuclear ribonucleoprotein Sm D2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|328861040|gb|EGG10144.1| hypothetical protein MELLADRAFT_94522 [Melampsora larici-populina
98AG31]
Length = 111
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/102 (70%), Positives = 84/102 (82%), Gaps = 5/102 (4%)
Query: 6 MEEDNVKN-EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64
++E+ ++ EE E TGPLSVL SVKN+TQ+LI RNN+KLL RV+AFDRH NMVL NV
Sbjct: 12 LDEEKIRALEEHEIATGPLSVLQSSVKNHTQILIALRNNRKLLARVKAFDRHSNMVLVNV 71
Query: 65 REMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
+EMWTELPK GK KK PVNKDRFISKMFLRGDSVI+VLR+
Sbjct: 72 KEMWTELPK-GKNKK---PVNKDRFISKMFLRGDSVILVLRH 109
>gi|322703763|gb|EFY95367.1| small nuclear ribonucleoprotein Sm D2 [Metarhizium anisopliae ARSEF
23]
Length = 121
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 77/91 (84%), Gaps = 1/91 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF +GPLS+L +VK++TQVLI+ RNN+KLL RV+AFDRHCNMVLENV+EMW E P+
Sbjct: 30 EEHEFTSGPLSILQTAVKSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWDETPR 89
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 90 LADG-KKGRPVNKDRFISKMFLRGDSVILVL 119
>gi|109510075|ref|XP_001054247.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Rattus
norvegicus]
gi|109512989|ref|XP_214847.2| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Rattus
norvegicus]
Length = 118
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/90 (85%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL S+KNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+E+WTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSIKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEIWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRG+SVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGNSVIVVLRNP 113
>gi|323456239|gb|EGB12106.1| hypothetical protein AURANDRAFT_20164 [Aureococcus anophagefferens]
Length = 104
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/93 (78%), Positives = 86/93 (92%)
Query: 15 EEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKT 74
E EF TGPLS+L+ S+K+N+QVLIN RNN KLL RV+AFDRHCNMVLENV+E+WTE+PKT
Sbjct: 9 ENEFATGPLSLLLHSMKSNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEVWTEIPKT 68
Query: 75 GKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
GKGKKK+ PVNK+R+ISKMFLRGDSVI+VLRNP
Sbjct: 69 GKGKKKSKPVNKERYISKMFLRGDSVILVLRNP 101
>gi|392597247|gb|EIW86569.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 111
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 79/93 (84%), Gaps = 4/93 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E + GPLSVL +V+N+ QVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK
Sbjct: 21 EEHEISQGPLSVLQQAVRNHAQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEVPK 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
GK KK PVNKDRFISKMFLRGDSVI++LRN
Sbjct: 81 -GKNKK---PVNKDRFISKMFLRGDSVILILRN 109
>gi|402078814|gb|EJT74079.1| small nuclear ribonucleoprotein Sm D2 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 117
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 77/91 (84%), Gaps = 1/91 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF+ GPLS+L +V+++ QVLI+ RNN+KLL RV+AFDRHCNMVLENV+EMWTE P+
Sbjct: 26 EEHEFSAGPLSILQTAVRSHAQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 85
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 86 LANG-KKGRPVNKDRFISKMFLRGDSVILVL 115
>gi|342880846|gb|EGU81864.1| hypothetical protein FOXB_07659 [Fusarium oxysporum Fo5176]
Length = 118
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 77/91 (84%), Gaps = 1/91 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF+ GPLS+L +V+++ QVLI+ RNN+KLL RV+AFDRHCNMVLENV+EMWTE P+
Sbjct: 27 EEHEFSAGPLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 86
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 87 LANG-KKGRPVNKDRFISKMFLRGDSVILVL 116
>gi|237832903|ref|XP_002365749.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma gondii
ME49]
gi|401408795|ref|XP_003883846.1| hypothetical protein NCLIV_035950 [Neospora caninum Liverpool]
gi|211963413|gb|EEA98608.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma gondii
ME49]
gi|221488207|gb|EEE26421.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma gondii
GT1]
gi|221508720|gb|EEE34289.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma gondii
VEG]
gi|325118263|emb|CBZ53814.1| hypothetical protein NCLIV_035950 [Neospora caninum Liverpool]
Length = 104
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/88 (76%), Positives = 78/88 (88%), Gaps = 1/88 (1%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 80
GPLSVL SVK+N+QVLINCRNN+K+LGRV+AFDRHCN+VL +VREMWTE K G GKKK
Sbjct: 18 GPLSVLAASVKDNSQVLINCRNNRKVLGRVKAFDRHCNLVLTDVREMWTETSKGG-GKKK 76
Query: 81 ALPVNKDRFISKMFLRGDSVIIVLRNPK 108
VNKDRFISK+FLRGD+VI++LRNPK
Sbjct: 77 VRTVNKDRFISKLFLRGDAVILILRNPK 104
>gi|156058484|ref|XP_001595165.1| hypothetical protein SS1G_03254 [Sclerotinia sclerotiorum 1980]
gi|154701041|gb|EDO00780.1| hypothetical protein SS1G_03254 [Sclerotinia sclerotiorum 1980
UF-70]
gi|347839440|emb|CCD54012.1| similar to small nuclear ribonucleoprotein sm d2 [Botryotinia
fuckeliana]
Length = 118
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/92 (71%), Positives = 80/92 (86%), Gaps = 3/92 (3%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF +GPLS+L +V+++ QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE P+
Sbjct: 27 EEHEFTSGPLSLLQAAVRSHGQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 86
Query: 74 -TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
+G GK + PVNKDRFISKMFLRGDSVI+VL
Sbjct: 87 LSGGGKGR--PVNKDRFISKMFLRGDSVILVL 116
>gi|390604110|gb|EIN13501.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 111
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 79/93 (84%), Gaps = 4/93 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E + GPLSVL +V+N+ QVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK
Sbjct: 21 EEHEISQGPLSVLQQAVRNHAQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEVPK 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
GK KK PVNKDRFISKMFLRGDSVI+VLR+
Sbjct: 81 -GKNKK---PVNKDRFISKMFLRGDSVILVLRH 109
>gi|302909473|ref|XP_003050081.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256731018|gb|EEU44368.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 117
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/98 (67%), Positives = 80/98 (81%), Gaps = 1/98 (1%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
E + + EE EF+ GPLS+L +V+++ QVLI+ RNN+KLL RV+AFDRHCNMVLENV+E
Sbjct: 19 EYEIAQLEEHEFSAGPLSILQTAVRSHIQVLISIRNNRKLLARVKAFDRHCNMVLENVKE 78
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
MWTE P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 79 MWTETPRLANG-KKGRPVNKDRFISKMFLRGDSVILVL 115
>gi|46125281|ref|XP_387194.1| hypothetical protein FG07018.1 [Gibberella zeae PH-1]
Length = 155
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/98 (67%), Positives = 80/98 (81%), Gaps = 1/98 (1%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
E + + EE EF+ GPLS+L +V+++ QVLI+ RNN+KLL RV+AFDRHCNMVLENV+E
Sbjct: 57 EYEIAQLEEYEFSAGPLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKE 116
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
MWTE P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 117 MWTETPRLA-GGKKGRPVNKDRFISKMFLRGDSVILVL 153
>gi|393218655|gb|EJD04143.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 112
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/93 (73%), Positives = 80/93 (86%), Gaps = 4/93 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE+E + GPLSVL+ +V+N+ QVLI+ RNNKKLL RV+AFDRH NMVLENV+EMW E+PK
Sbjct: 22 EEQEISQGPLSVLLQAVRNHHQVLISLRNNKKLLARVKAFDRHTNMVLENVKEMWVEVPK 81
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
GK KK PVNKDRFISKMFLRGDSVI++LRN
Sbjct: 82 -GKNKK---PVNKDRFISKMFLRGDSVILILRN 110
>gi|400600870|gb|EJP68538.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 118
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 77/91 (84%), Gaps = 1/91 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF+ GPLS+L +V+++ QVLI+ RNN+KLL RV+AFDRHCNMVLENV+EMWTE P+
Sbjct: 27 EEHEFSAGPLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 86
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 87 LADG-KKGRPVNKDRFISKMFLRGDSVILVL 116
>gi|408397992|gb|EKJ77129.1| hypothetical protein FPSE_02773 [Fusarium pseudograminearum CS3096]
Length = 117
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/98 (67%), Positives = 80/98 (81%), Gaps = 1/98 (1%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
E + + EE EF+ GPLS+L +V+++ QVLI+ RNN+KLL RV+AFDRHCNMVLENV+E
Sbjct: 19 EYEIAQLEEYEFSAGPLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKE 78
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
MWTE P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 79 MWTETPRLA-GGKKGRPVNKDRFISKMFLRGDSVILVL 115
>gi|355763191|gb|EHH62129.1| hypothetical protein EGM_20337, partial [Macaca fascicularis]
Length = 117
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/90 (86%), Positives = 85/90 (94%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 82
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKD +ISKMFLR DSVI+VLRNP
Sbjct: 83 KKKSKPVNKDHYISKMFLRRDSVIVVLRNP 112
>gi|348572834|ref|XP_003472197.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cavia
porcellus]
Length = 117
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/100 (73%), Positives = 84/100 (84%), Gaps = 1/100 (1%)
Query: 8 EDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
E+ K EEE+FNTGPLSVL S+KNNTQVLI+CRNNKKLLG V+AFDRHCNMVLENV+EM
Sbjct: 14 EELQKREEEKFNTGPLSVLTQSIKNNTQVLIDCRNNKKLLGLVKAFDRHCNMVLENVKEM 73
Query: 68 WTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
WTE+ KK+ PVNKD +ISKMFL G+SVI+VLRNP
Sbjct: 74 WTEV-PKSGKGKKSKPVNKDCYISKMFLHGESVIMVLRNP 112
>gi|441600622|ref|XP_004087625.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 1
[Nomascus leucogenys]
gi|441600625|ref|XP_004087626.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 2
[Nomascus leucogenys]
Length = 118
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/90 (78%), Positives = 82/90 (91%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCR++KKLLG V+AF+RHCNMVLEN++EMWTE+PK+ KG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRSSKKLLGHVKAFERHCNMVLENMKEMWTEVPKSSKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKD +ISKMFL GD VI+VLRNP
Sbjct: 84 KKKSKPVNKDCYISKMFLHGDLVIVVLRNP 113
>gi|345568451|gb|EGX51345.1| hypothetical protein AOL_s00054g415 [Arthrobotrys oligospora ATCC
24927]
Length = 112
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 76/91 (83%), Gaps = 1/91 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF GPLS+L +V+ + QVLI+CRNN+KLL RV+AFDRH NMVLENV+EMWTE P+
Sbjct: 21 EEYEFANGPLSILQTAVRTHNQVLISCRNNRKLLARVKAFDRHSNMVLENVKEMWTETPR 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
+G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 81 NAQG-KKGRPVNKDRFISKMFLRGDSVILVL 110
>gi|242762206|ref|XP_002340329.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
stipitatus ATCC 10500]
gi|218723525|gb|EED22942.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
stipitatus ATCC 10500]
Length = 114
Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 75/91 (82%), Gaps = 4/91 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E GPLS+L + + +TQVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 26 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 85
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
GKG+ VNKDRFISKMFLRGDSVI+VL
Sbjct: 86 GGKGR----GVNKDRFISKMFLRGDSVILVL 112
>gi|119478615|ref|XP_001259398.1| small nuclear ribonucleoprotein SmD2, putative [Neosartorya
fischeri NRRL 181]
gi|121713894|ref|XP_001274558.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus
clavatus NRRL 1]
gi|119402711|gb|EAW13132.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus
clavatus NRRL 1]
gi|119407552|gb|EAW17501.1| small nuclear ribonucleoprotein SmD2, putative [Neosartorya
fischeri NRRL 181]
Length = 115
Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 75/91 (82%), Gaps = 4/91 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E GPLS+L + + +TQVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 27 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 86
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
GKG+ VNKDRFISKMFLRGDSVI+VL
Sbjct: 87 GGKGRG----VNKDRFISKMFLRGDSVILVL 113
>gi|70997219|ref|XP_753362.1| small nuclear ribonucleoprotein SmD2 [Aspergillus fumigatus Af293]
gi|66850998|gb|EAL91324.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus
fumigatus Af293]
gi|159126913|gb|EDP52029.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus
fumigatus A1163]
Length = 122
Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 75/91 (82%), Gaps = 4/91 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E GPLS+L + + +TQVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 34 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 93
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
GKG+ VNKDRFISKMFLRGDSVI+VL
Sbjct: 94 GGKGRG----VNKDRFISKMFLRGDSVILVL 120
>gi|212529806|ref|XP_002145060.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
marneffei ATCC 18224]
gi|210074458|gb|EEA28545.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
marneffei ATCC 18224]
Length = 114
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 75/91 (82%), Gaps = 4/91 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E GPLS+L + + +TQVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 26 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 85
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
GKG+ VNKDRFISKMFLRGDSVI+VL
Sbjct: 86 GGKGR----GVNKDRFISKMFLRGDSVILVL 112
>gi|255954305|ref|XP_002567905.1| Pc21g08660 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589616|emb|CAP95763.1| Pc21g08660 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 123
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 74/91 (81%), Gaps = 4/91 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E GPLS+L + + +TQVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 35 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 94
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
KGK VNKDRFISKMFLRGDSVI++L
Sbjct: 95 GAKGKG----VNKDRFISKMFLRGDSVILIL 121
>gi|425772328|gb|EKV10736.1| Small nuclear ribonucleoprotein SmD2, putative [Penicillium
digitatum Pd1]
gi|425777592|gb|EKV15755.1| Small nuclear ribonucleoprotein SmD2, putative [Penicillium
digitatum PHI26]
Length = 117
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 74/91 (81%), Gaps = 4/91 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E GPLS+L + + +TQVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 29 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 88
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
KGK VNKDRFISKMFLRGDSVI+VL
Sbjct: 89 GAKGKG----VNKDRFISKMFLRGDSVILVL 115
>gi|115387341|ref|XP_001211176.1| small nuclear ribonucleoprotein Sm D2 [Aspergillus terreus NIH2624]
gi|114195260|gb|EAU36960.1| small nuclear ribonucleoprotein Sm D2 [Aspergillus terreus NIH2624]
Length = 115
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 74/91 (81%), Gaps = 4/91 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E GPLS+L + + +TQVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 27 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 86
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
KGK VNKDRFISKMFLRGDSVI+VL
Sbjct: 87 GSKGKG----VNKDRFISKMFLRGDSVILVL 113
>gi|109122268|ref|XP_001083377.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
Length = 118
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/89 (85%), Positives = 85/89 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
F+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FHTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRN 106
KKK+ PVNKDR+ISKMFLR DSV++VLRN
Sbjct: 84 KKKSKPVNKDRYISKMFLRQDSVVLVLRN 112
>gi|317034834|ref|XP_001401271.2| small nuclear ribonucleoprotein Sm D2 [Aspergillus niger CBS
513.88]
gi|350639668|gb|EHA28022.1| hypothetical protein ASPNIDRAFT_41962 [Aspergillus niger ATCC 1015]
gi|358374829|dbj|GAA91418.1| small nuclear ribonucleoprotein SmD2 [Aspergillus kawachii IFO
4308]
Length = 115
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 74/91 (81%), Gaps = 4/91 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E GPLS+L + + +TQVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 27 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 86
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
G GK VNKDRFISKMFLRGDSVI+VL
Sbjct: 87 GGNGKG----VNKDRFISKMFLRGDSVILVL 113
>gi|134081955|emb|CAK97221.1| unnamed protein product [Aspergillus niger]
Length = 117
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 74/91 (81%), Gaps = 4/91 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E GPLS+L + + +TQVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 29 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 88
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
G GK VNKDRFISKMFLRGDSVI+VL
Sbjct: 89 GGNGK----GVNKDRFISKMFLRGDSVILVL 115
>gi|268557296|ref|XP_002636637.1| C. briggsae CBR-SNR-4 protein [Caenorhabditis briggsae]
Length = 118
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/90 (83%), Positives = 83/90 (92%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
F+ GPLS+L SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKG
Sbjct: 24 FSVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKKA V KDRFISKMFLRGDSVI+V++NP
Sbjct: 84 KKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
>gi|346975454|gb|EGY18906.1| small nuclear ribonucleoprotein Sm D2 [Verticillium dahliae
VdLs.17]
Length = 122
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/96 (68%), Positives = 78/96 (81%), Gaps = 6/96 (6%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV-----REMW 68
EE EF+ GPLS+L +V+++TQVLI+ RNN+KLL RV+AFDRHCNMVLENV +EMW
Sbjct: 26 EEHEFSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVVRTRLKEMW 85
Query: 69 TELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
TE P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 86 TETPRNADG-KKGRPVNKDRFISKMFLRGDSVILVL 120
>gi|224010008|ref|XP_002293962.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970634|gb|EED88971.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 108
Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 75/91 (82%)
Query: 17 EFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGK 76
+ +GP SVL +VK NTQVL+N RNN KLLGRV+A+DRH N++LE+V+EMWTE K GK
Sbjct: 9 DLKSGPFSVLFKAVKGNTQVLVNVRNNHKLLGRVKAYDRHMNLLLEDVKEMWTEYSKGGK 68
Query: 77 GKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
G+K+ +NKDR++SKMFLRGDSVI+V+ NP
Sbjct: 69 GRKRGTSINKDRYVSKMFLRGDSVILVVSNP 99
>gi|349803317|gb|AEQ17131.1| putative small nuclear ribonucleoprotein sm d2 [Pipa carvalhoi]
Length = 116
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 78/90 (86%), Positives = 85/90 (94%), Gaps = 2/90 (2%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLL V+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLL--VKAFDRHCNMVLENVKEMWTEVPKSGKG 81
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 82 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 111
>gi|336274873|ref|XP_003352190.1| hypothetical protein SMAC_02625 [Sordaria macrospora k-hell]
Length = 108
Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 76/91 (83%), Gaps = 1/91 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF+ GPLS+L +V++++QVLI+ RN +K+L RV+AFDRH NMVLENV+EMWTE P+
Sbjct: 17 EEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPR 76
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
GKK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 77 LANGKKGK-PVNKDRFISKMFLRGDSVILVL 106
>gi|164426898|ref|XP_961124.2| small nuclear ribonucleoprotein Sm D2 [Neurospora crassa OR74A]
gi|157071520|gb|EAA31888.2| small nuclear ribonucleoprotein Sm D2 [Neurospora crassa OR74A]
Length = 119
Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 76/91 (83%), Gaps = 1/91 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF+ GPLS+L +V++++QVLI+ RN +K+L RV+AFDRH NMVLENV+EMWTE P+
Sbjct: 28 EEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPR 87
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
GKK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 88 LANGKKGK-PVNKDRFISKMFLRGDSVILVL 117
>gi|380092270|emb|CCC10046.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 119
Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 76/91 (83%), Gaps = 1/91 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF+ GPLS+L +V++++QVLI+ RN +K+L RV+AFDRH NMVLENV+EMWTE P+
Sbjct: 28 EEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPR 87
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
GKK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 88 LANGKKGK-PVNKDRFISKMFLRGDSVILVL 117
>gi|336472988|gb|EGO61148.1| small nuclear ribonucleoprotein Sm D2 [Neurospora tetrasperma FGSC
2508]
gi|350293763|gb|EGZ74848.1| small nuclear ribonucleoprotein Sm D2 [Neurospora tetrasperma FGSC
2509]
Length = 119
Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 76/91 (83%), Gaps = 1/91 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF+ GPLS+L +V++++QVLI+ RN +K+L RV+AFDRH NMVLENV+EMWTE P+
Sbjct: 28 EEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPR 87
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
GKK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 88 LANGKKGK-PVNKDRFISKMFLRGDSVILVL 117
>gi|432102126|gb|ELK29935.1| Small nuclear ribonucleoprotein Sm D2 [Myotis davidii]
Length = 109
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 80/101 (79%), Gaps = 1/101 (0%)
Query: 8 EDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
E+ K EEE NT PLSVL SVKNNTQVLIN R NK LLGRV+AFD H NMVLENV E+
Sbjct: 4 EEPQKRGEEELNTSPLSVLTPSVKNNTQVLINYRKNKNLLGRVKAFDGHYNMVLENVEEL 63
Query: 68 WTELPKTGKGKKKALPVNKDRFISKMFLR-GDSVIIVLRNP 107
TE+PK+ KG+KK+ PV+KDR+IS MF R GDSVI+ LR+P
Sbjct: 64 GTEVPKSDKGRKKSKPVHKDRYISAMFPRAGDSVIVGLRHP 104
>gi|189208117|ref|XP_001940392.1| small nuclear ribonucleoprotein Sm D2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330933723|ref|XP_003304270.1| hypothetical protein PTT_16802 [Pyrenophora teres f. teres 0-1]
gi|187976485|gb|EDU43111.1| small nuclear ribonucleoprotein Sm D2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311319198|gb|EFQ87625.1| hypothetical protein PTT_16802 [Pyrenophora teres f. teres 0-1]
gi|451847200|gb|EMD60508.1| hypothetical protein COCSADRAFT_163837 [Cochliobolus sativus
ND90Pr]
gi|451997866|gb|EMD90331.1| hypothetical protein COCHEDRAFT_1157376 [Cochliobolus
heterostrophus C5]
Length = 117
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 77/102 (75%), Gaps = 1/102 (0%)
Query: 3 SRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 62
S E + + EE E TGPLS+L +V++ TQVLI+CRNN+K+L RV+AFDRHCNMVLE
Sbjct: 15 SELTEYEVAQVEEHELTTGPLSILQTAVRSRTQVLISCRNNRKILARVKAFDRHCNMVLE 74
Query: 63 NVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
N +EMWTE P+ G VNKDRFISK+FLRGDSVI+VL
Sbjct: 75 NAKEMWTETPRLANG-SYGRKVNKDRFISKLFLRGDSVILVL 115
>gi|358053885|dbj|GAB00018.1| hypothetical protein E5Q_06720 [Mixia osmundae IAM 14324]
Length = 111
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/102 (66%), Positives = 82/102 (80%), Gaps = 5/102 (4%)
Query: 6 MEEDNVKN-EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64
M+E ++ EE E + GPL+VL SVKN+TQ+L+ RN KLL RV+AFDRH NMVLENV
Sbjct: 12 MDEAQIRALEEHEISQGPLNVLQQSVKNHTQILVALRNGHKLLARVKAFDRHSNMVLENV 71
Query: 65 REMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
+EMWTE+PK GK KK PVNKDRFISK+FLRGDSVI+VLR+
Sbjct: 72 KEMWTEIPK-GKNKK---PVNKDRFISKLFLRGDSVIMVLRS 109
>gi|145535864|ref|XP_001453665.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421387|emb|CAK86268.1| unnamed protein product [Paramecium tetraurelia]
Length = 103
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/95 (67%), Positives = 75/95 (78%), Gaps = 1/95 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
+EE GP +L ++V +NTQVLI RNN+KLLGRV+AFDRH NM+LENV EMWTE+PK
Sbjct: 10 QEETLEKGPFGLLTITVSHNTQVLIELRNNRKLLGRVKAFDRHMNMILENVTEMWTEIPK 69
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
KG KKA NK+RFI KMFLRGDSVI +LRNPK
Sbjct: 70 GNKG-KKAHATNKERFIPKMFLRGDSVIYILRNPK 103
>gi|396486327|ref|XP_003842389.1| similar to small nuclear ribonucleoprotein sm d2 [Leptosphaeria
maculans JN3]
gi|312218965|emb|CBX98910.1| similar to small nuclear ribonucleoprotein sm d2 [Leptosphaeria
maculans JN3]
Length = 117
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/98 (63%), Positives = 76/98 (77%), Gaps = 1/98 (1%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
E + + EE E TGPLS+L +V++ TQVLI+CRNN+K+L RV+AFDRHCNMVLEN +E
Sbjct: 19 EYEVAQVEEHELTTGPLSILQTAVRSRTQVLISCRNNRKILARVKAFDRHCNMVLENAKE 78
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
MWTE P+ G VNKDRFISK+FLRGDSVI+VL
Sbjct: 79 MWTETPRLSNG-SMGRKVNKDRFISKLFLRGDSVILVL 115
>gi|148709180|gb|EDL41126.1| mCG49198 [Mus musculus]
Length = 118
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/90 (83%), Positives = 83/90 (92%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRN KKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNK+ +ISKMFL GDS I+VLRNP
Sbjct: 84 KKKSKPVNKNCYISKMFLHGDSFIVVLRNP 113
>gi|444724875|gb|ELW65462.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 117
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 1/90 (1%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLS L SVKNNTQVLINC NNKKLLGRV+AFDRHCNMVLENV+EMWTE+
Sbjct: 24 FNTGPLSELTQSVKNNTQVLINCCNNKKLLGRVKAFDRHCNMVLENVKEMWTEV-PKSGK 82
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KK+ PVNKDR+ISKMFLRGD VI+VL+NP
Sbjct: 83 GKKSKPVNKDRYISKMFLRGDLVIVVLQNP 112
>gi|320590837|gb|EFX03280.1| small nuclear ribonucleoprotein sm d2 [Grosmannia clavigera kw1407]
Length = 116
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/98 (65%), Positives = 79/98 (80%), Gaps = 2/98 (2%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
E + + E+ EF+ GPLS+L +V+ +TQVLI+ R+N+KLL RV+AFDRHCNM+LENV+E
Sbjct: 19 EYEIAQLEQWEFSNGPLSILQTAVRTHTQVLISIRSNRKLLARVKAFDRHCNMILENVKE 78
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
MWTE P T KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 79 MWTETPVT--NGKKGRPVNKDRFISKMFLRGDSVILVL 114
>gi|50555361|ref|XP_505089.1| YALI0F06644p [Yarrowia lipolytica]
gi|49650959|emb|CAG77896.1| YALI0F06644p [Yarrowia lipolytica CLIB122]
Length = 115
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/93 (69%), Positives = 76/93 (81%), Gaps = 1/93 (1%)
Query: 12 KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 71
K EE EF+ GPLS+L +V+N+TQVLI+CRNNKKLL RV+AFDRH NMVLENV+EMWTE
Sbjct: 22 KLEEYEFSHGPLSLLQRAVQNHTQVLISCRNNKKLLARVKAFDRHSNMVLENVKEMWTEK 81
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
KT G K V KDRFISKMFLRGD+VI+V+
Sbjct: 82 TKTASG-KPGKTVTKDRFISKMFLRGDTVILVV 113
>gi|378726124|gb|EHY52583.1| small nuclear ribonucleoprotein Sm D2 [Exophiala dermatitidis
NIH/UT8656]
Length = 100
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 76/91 (83%), Gaps = 5/91 (5%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
E E +TGPLS+LM + + +TQVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE K
Sbjct: 13 EAHELSTGPLSILMTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--K 70
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
T KG K VNKDRFISKMFLRGDSVI+VL
Sbjct: 71 T-KGNSKG--VNKDRFISKMFLRGDSVILVL 98
>gi|219113577|ref|XP_002186372.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583222|gb|ACI65842.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 122
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 79/105 (75%), Gaps = 6/105 (5%)
Query: 9 DNVKNEEE------EFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 62
DN +N E + +GP S+L +V+ NTQVLIN RNN KLL RV+A+DRH N++LE
Sbjct: 3 DNHENGESTSEHATDLKSGPFSILYQAVRGNTQVLINVRNNHKLLARVKAYDRHMNLLLE 62
Query: 63 NVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
+V+EMWTE+ K GKG+ + VNKDR++SKMFLRGDSVI+V+ NP
Sbjct: 63 DVKEMWTEVSKGGKGRTRGTAVNKDRYVSKMFLRGDSVILVVSNP 107
>gi|340959200|gb|EGS20381.1| putative small nuclear ribonucleoprotein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 592
Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 62/91 (68%), Positives = 74/91 (81%), Gaps = 2/91 (2%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E GPLS+L +V+++TQVLI+ R+ +KLL RV+AFDRHCNM+LENV+EMWTE P
Sbjct: 502 EEWEMANGPLSLLQTAVRSHTQVLISVRSGRKLLARVKAFDRHCNMILENVKEMWTETPV 561
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
T KK PVNKDRFISKMFLRGDSV+IVL
Sbjct: 562 T--NGKKGRPVNKDRFISKMFLRGDSVVIVL 590
>gi|452825642|gb|EME32637.1| small nuclear ribonucleoprotein D2 [Galdieria sulphuraria]
Length = 119
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/100 (66%), Positives = 83/100 (83%), Gaps = 6/100 (6%)
Query: 9 DNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 68
D VK+EE F+ GPLS+L+ VK+ T VLIN RN+KKLLG+V+AFDRH NM+LENV+E+W
Sbjct: 26 DTVKSEE--FSQGPLSLLVDCVKDGTPVLINVRNSKKLLGKVKAFDRHFNMILENVKEIW 83
Query: 69 TELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
TE+PK+ KKA PVNKDRFI KMFLRGDSV++VL+ P+
Sbjct: 84 TEIPKS----KKARPVNKDRFIPKMFLRGDSVVLVLKAPQ 119
>gi|297598393|ref|NP_001045506.2| Os01g0967000 [Oryza sativa Japonica Group]
gi|255674111|dbj|BAF07420.2| Os01g0967000 [Oryza sativa Japonica Group]
Length = 226
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/64 (95%), Positives = 63/64 (98%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
VLINC+NNKKLLGRVRAFD HCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFL
Sbjct: 155 VLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL 214
Query: 96 RGDS 99
RGDS
Sbjct: 215 RGDS 218
>gi|118388573|ref|XP_001027383.1| Sm protein [Tetrahymena thermophila]
gi|89309153|gb|EAS07141.1| Sm protein [Tetrahymena thermophila SB210]
Length = 103
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 80/103 (77%), Gaps = 1/103 (0%)
Query: 6 MEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 65
MEE+ EE F+ GP S+L +VK NTQVLI RNN+K+L +VRAFDRH NMVLENV
Sbjct: 1 MEEEKKLTPEETFSQGPFSLLFKAVKANTQVLIALRNNRKMLAKVRAFDRHMNMVLENVL 60
Query: 66 EMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
EMWTE+P+ G KK+ P+ K+R+I+K+FLRGDSVI VL+NP+
Sbjct: 61 EMWTEVPRGSHG-KKSKPMKKERYITKLFLRGDSVIFVLKNPQ 102
>gi|392576339|gb|EIW69470.1| hypothetical protein TREMEDRAFT_30560, partial [Tremella
mesenterica DSM 1558]
Length = 117
Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/93 (72%), Positives = 77/93 (82%), Gaps = 5/93 (5%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E + GPLSVL +V+N +QVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE PK
Sbjct: 20 EEYEISQGPLSVLQQAVRNQSQVLISLRNNKKLLARVKAFDRHANMVLENVKEMWTETPK 79
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVII-VLR 105
GKGKK +NKDRFISK+FLRGDSVI+ VLR
Sbjct: 80 -GKGKK---TINKDRFISKLFLRGDSVILGVLR 108
>gi|340501173|gb|EGR27984.1| small nuclear ribonucleoprotein sm d2, putative [Ichthyophthirius
multifiliis]
Length = 103
Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/102 (63%), Positives = 79/102 (77%), Gaps = 1/102 (0%)
Query: 6 MEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 65
M+E+ K E+ F+TGP S+L +VK NTQVLI RNN+K+L RVRAFDRH NMVLENV
Sbjct: 1 MDEEISKIPEDNFSTGPFSLLFKAVKANTQVLIALRNNRKILARVRAFDRHMNMVLENVL 60
Query: 66 EMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
EMWTE+P+ G+K P+ K+R+ SKMFLRGDSVI VLRNP
Sbjct: 61 EMWTEVPRGSHGQKSK-PMRKERYHSKMFLRGDSVIFVLRNP 101
>gi|290972303|ref|XP_002668893.1| predicted protein [Naegleria gruberi]
gi|290991668|ref|XP_002678457.1| predicted protein [Naegleria gruberi]
gi|284082430|gb|EFC36149.1| predicted protein [Naegleria gruberi]
gi|284092069|gb|EFC45713.1| predicted protein [Naegleria gruberi]
Length = 118
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 80/88 (90%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 80
GPLS+L+ SV+ TQ+LI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK+GKG+KK
Sbjct: 30 GPLSLLLESVREQTQILISCRNNRKLLARVKAFDRHCNMVLENVQEMWTEQPKSGKGRKK 89
Query: 81 ALPVNKDRFISKMFLRGDSVIIVLRNPK 108
+ P+NK RF +K+FLRGDSVI+VLRNPK
Sbjct: 90 SKPINKTRFTNKLFLRGDSVILVLRNPK 117
>gi|302695697|ref|XP_003037527.1| hypothetical protein SCHCODRAFT_13757 [Schizophyllum commune H4-8]
gi|300111224|gb|EFJ02625.1| hypothetical protein SCHCODRAFT_13757 [Schizophyllum commune H4-8]
Length = 127
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 69/109 (63%), Positives = 80/109 (73%), Gaps = 20/109 (18%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE------- 66
EE E + GPLSVL +V+N+TQVLI+ RN+KKLL RV+AFDRH NMVLENV+E
Sbjct: 21 EEHEISQGPLSVLQQAVRNHTQVLISLRNDKKLLARVKAFDRHSNMVLENVKEARQFTFS 80
Query: 67 ---------MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
MWTE+PK GK KK PVNKDRFISKMFLRGDSVI++LRN
Sbjct: 81 LPLNAYTQQMWTEIPK-GKNKK---PVNKDRFISKMFLRGDSVILILRN 125
>gi|380800505|gb|AFE72128.1| small nuclear ribonucleoprotein Sm D2 isoform 1, partial [Macaca
mulatta]
Length = 89
Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 74/84 (88%), Positives = 81/84 (96%)
Query: 24 SVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALP 83
SVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ P
Sbjct: 1 SVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKP 60
Query: 84 VNKDRFISKMFLRGDSVIIVLRNP 107
VNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 61 VNKDRYISKMFLRGDSVIVVLRNP 84
>gi|444705722|gb|ELW47114.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 118
Score = 130 bits (327), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 74/90 (82%), Positives = 81/90 (90%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINC NNKKLLGRV+AFDRHCNM LEN++EMWTE PK+GKG
Sbjct: 24 FNTGPLSVLTPSVKNNTQVLINCCNNKKLLGRVKAFDRHCNMALENMKEMWTEDPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKD +ISKMFL GDSVI+VL NP
Sbjct: 84 KKKSKPVNKDGYISKMFLHGDSVIVVLWNP 113
>gi|413942323|gb|AFW74972.1| hypothetical protein ZEAMMB73_294095 [Zea mays]
Length = 116
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/73 (84%), Positives = 67/73 (91%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
EE N+K EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE
Sbjct: 3 EETNIKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
Query: 67 MWTELPKTGKGKK 79
MWTE+ +T + K
Sbjct: 63 MWTEVGRTERSLK 75
>gi|169844304|ref|XP_001828873.1| pre-mRNA splicing factor [Coprinopsis cinerea okayama7#130]
gi|116509985|gb|EAU92880.1| pre-mRNA splicing factor [Coprinopsis cinerea okayama7#130]
Length = 130
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/112 (62%), Positives = 78/112 (69%), Gaps = 23/112 (20%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE------- 66
EE E + GPLSVL +V+N+ QVLI+ RNNKKLL RV+AFDRH NMVLENV+E
Sbjct: 21 EEHEISQGPLSVLQQAVRNHAQVLISLRNNKKLLARVKAFDRHSNMVLENVKEERPSPFT 80
Query: 67 ------------MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
MWTE PK GK KK PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 81 TIQEPRLMVNSQMWTETPK-GKNKK---PVNKDRFISKMFLRGDSVILVLRN 128
>gi|412990385|emb|CCO19703.1| Small nuclear ribonucleoprotein Sm D2 [Bathycoccus prasinos]
Length = 97
Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 80/97 (82%), Gaps = 2/97 (2%)
Query: 12 KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 71
K+ E+ GPLSVL+ ++K N+QVLINCRNN+KLLGRV+AFDRH N++LENV+E+WT+
Sbjct: 3 KDFTEDSEHGPLSVLVSAIKTNSQVLINCRNNRKLLGRVKAFDRHLNLLLENVKEVWTD- 61
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
+ + + K P NKDRFISK+FLRGDS+I+VL+NPK
Sbjct: 62 -RNSQKESKTPPSNKDRFISKLFLRGDSIILVLKNPK 97
>gi|315042035|ref|XP_003170394.1| hypothetical protein MGYG_07638 [Arthroderma gypseum CBS 118893]
gi|311345428|gb|EFR04631.1| hypothetical protein MGYG_07638 [Arthroderma gypseum CBS 118893]
Length = 135
Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 71/91 (78%), Gaps = 4/91 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E TGPLS+L + + ++QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 47 EEHELTTGPLSILQTATRAHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 103
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
K VNKDRFISKMFLRGDSVI+VL
Sbjct: 104 -KPKGGKGKGVNKDRFISKMFLRGDSVILVL 133
>gi|432118204|gb|ELK38063.1| Small nuclear ribonucleoprotein Sm D2 [Myotis davidii]
Length = 118
Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/89 (75%), Positives = 77/89 (86%)
Query: 19 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGK 78
NTGP S+L SVKNNTQVLINCRNNKKLLG V+AFDRHCNMVLENV+EMWT +PK+GK K
Sbjct: 25 NTGPFSMLTQSVKNNTQVLINCRNNKKLLGWVKAFDRHCNMVLENVKEMWTGVPKSGKSK 84
Query: 79 KKALPVNKDRFISKMFLRGDSVIIVLRNP 107
+K+ VNKD +ISKMFL D VI+V+RNP
Sbjct: 85 EKSKTVNKDFYISKMFLHRDLVIVVMRNP 113
>gi|328765680|gb|EGF75829.1| hypothetical protein BATDEDRAFT_15195 [Batrachochytrium
dendrobatidis JAM81]
Length = 74
Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 67/73 (91%)
Query: 29 SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 88
+VKN++QVL+ CRNN+KLL RV+AFDRHCNMVLENV+EMWTE P+TGKG KKA PVNKDR
Sbjct: 1 AVKNSSQVLVVCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPQTGKGIKKAKPVNKDR 60
Query: 89 FISKMFLRGDSVI 101
FISKMFLRGDS I
Sbjct: 61 FISKMFLRGDSGI 73
>gi|156083176|ref|XP_001609072.1| small nuclear ribonucleoprotein [Babesia bovis T2Bo]
gi|154796322|gb|EDO05504.1| small nuclear ribonucleoprotein, putative [Babesia bovis]
Length = 162
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/96 (63%), Positives = 80/96 (83%), Gaps = 3/96 (3%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 72
E+++ +GPLSVL V++N+QVLINCR+N+KLLGRV+AFDRH NM+L +VREMWTE+
Sbjct: 70 TEDKDCPSGPLSVLEACVRDNSQVLINCRSNRKLLGRVKAFDRHFNMILTDVREMWTEV- 128
Query: 73 KTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
G GKKK + NKDR+IS++FLRGDSV++VL NPK
Sbjct: 129 SGGGGKKKYM--NKDRYISRLFLRGDSVVVVLSNPK 162
>gi|258567138|ref|XP_002584313.1| small nuclear ribonucleoprotein Sm D2 [Uncinocarpus reesii 1704]
gi|237905759|gb|EEP80160.1| small nuclear ribonucleoprotein Sm D2 [Uncinocarpus reesii 1704]
Length = 114
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 72/91 (79%), Gaps = 4/91 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E TGPLS+L + ++++QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 26 EEHELTTGPLSILQTATRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
K VNKDRF+SKMFLRGDSVI+VL
Sbjct: 83 -KPKGGKGKGVNKDRFVSKMFLRGDSVILVL 112
>gi|296809754|ref|XP_002845215.1| small nuclear ribonucleoprotein Sm D2 [Arthroderma otae CBS 113480]
gi|327292564|ref|XP_003230980.1| small nuclear ribonucleoprotein SmD2 [Trichophyton rubrum CBS
118892]
gi|238842603|gb|EEQ32265.1| small nuclear ribonucleoprotein Sm D2 [Arthroderma otae CBS 113480]
gi|326466786|gb|EGD92239.1| small nuclear ribonucleoprotein SmD2 [Trichophyton rubrum CBS
118892]
Length = 114
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 71/91 (78%), Gaps = 4/91 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E TGPLS+L + + ++QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 26 EEHELTTGPLSILQTATRAHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
K VNKDRFISKMFLRGDSVI+VL
Sbjct: 83 -KPKGGKGKGVNKDRFISKMFLRGDSVILVL 112
>gi|367050014|ref|XP_003655386.1| hypothetical protein THITE_2119053 [Thielavia terrestris NRRL 8126]
gi|347002650|gb|AEO69050.1| hypothetical protein THITE_2119053 [Thielavia terrestris NRRL 8126]
Length = 116
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/98 (63%), Positives = 77/98 (78%), Gaps = 2/98 (2%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
E + + E E + GPLS+L +V++++QVLI+ R+N+KLL RV+AFDRHCNM+LENV+E
Sbjct: 19 EYEIAQLESWEMSNGPLSLLQTAVRSHSQVLISIRSNRKLLARVKAFDRHCNMILENVKE 78
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
MWTE P KK PVNKDRFISKMFLRGDSVIIVL
Sbjct: 79 MWTETPV--HNGKKGRPVNKDRFISKMFLRGDSVIIVL 114
>gi|119174655|ref|XP_001239674.1| hypothetical protein CIMG_09295 [Coccidioides immitis RS]
gi|392869868|gb|EAS28397.2| small nuclear ribonucleoprotein Sm D2 [Coccidioides immitis RS]
Length = 114
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 72/91 (79%), Gaps = 4/91 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E TGPLS+L + ++++QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 26 EEHELTTGPLSILQTATRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
K VNKDRF+SKMFLRGDSVI+VL
Sbjct: 83 -KPKGGKGKGVNKDRFVSKMFLRGDSVILVL 112
>gi|300175427|emb|CBK20738.2| unnamed protein product [Blastocystis hominis]
Length = 457
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/96 (69%), Positives = 79/96 (82%)
Query: 12 KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 71
K+EE EF GPLS+L +VKN T VLIN RNN KLL V+AFDRHCNMVLENV+E+WTE+
Sbjct: 358 KSEEAEFAQGPLSILYRAVKNGTSVLINVRNNHKLLCHVKAFDRHCNMVLENVKEIWTEV 417
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
PK+GKGKKKA + KDRFI K+FLRGDSV++V NP
Sbjct: 418 PKSGKGKKKAKAITKDRFIPKLFLRGDSVVVVCSNP 453
>gi|169614612|ref|XP_001800722.1| hypothetical protein SNOG_10452 [Phaeosphaeria nodorum SN15]
gi|160702782|gb|EAT81846.2| hypothetical protein SNOG_10452 [Phaeosphaeria nodorum SN15]
Length = 133
Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 78/118 (66%), Gaps = 17/118 (14%)
Query: 3 SRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 62
S E + + EE E TGPLS+L +V++ TQVLI+CRNN+K+L RV+AFDRHCNMVLE
Sbjct: 15 SELTEYEVAQVEEHELTTGPLSILQTAVRSRTQVLISCRNNRKILARVKAFDRHCNMVLE 74
Query: 63 NVREMWTELPKTGKGKKKALPVNKDRFISKM----------------FLRGDSVIIVL 104
N +EMWTE P+ G + VNKDRFISK+ FLRGDSVI+VL
Sbjct: 75 NAKEMWTETPRLANG-QYGRKVNKDRFISKLYVSSAFKTYAMLTASSFLRGDSVILVL 131
>gi|367028268|ref|XP_003663418.1| hypothetical protein MYCTH_2305356 [Myceliophthora thermophila ATCC
42464]
gi|347010687|gb|AEO58173.1| hypothetical protein MYCTH_2305356 [Myceliophthora thermophila ATCC
42464]
Length = 116
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/98 (63%), Positives = 76/98 (77%), Gaps = 2/98 (2%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
E + + E E + GPLS+L +V+++ QVLI+ R+N+KLL RV+AFDRHCNM+LENV+E
Sbjct: 19 EYEIAQLEAWEMSNGPLSLLQTAVRSHAQVLISIRSNRKLLARVKAFDRHCNMILENVKE 78
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
MWTE P KK PVNKDRFISKMFLRGDSVIIVL
Sbjct: 79 MWTETPV--HNGKKGRPVNKDRFISKMFLRGDSVIIVL 114
>gi|171685514|ref|XP_001907698.1| hypothetical protein [Podospora anserina S mat+]
gi|170942718|emb|CAP68371.1| unnamed protein product [Podospora anserina S mat+]
Length = 116
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 74/91 (81%), Gaps = 2/91 (2%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
E E + GPLS+L +V++++QVLI+ R+N+KLL RV+AFDRHCNM+LENV+EMWTE P
Sbjct: 26 EAYEMSNGPLSLLQTAVRSHSQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTETPV 85
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 86 --HNGKKGRPVNKDRFISKMFLRGDSVILVL 114
>gi|325091149|gb|EGC44459.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus H88]
Length = 187
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 76/91 (83%), Gaps = 4/91 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E +GPLS+L + +++ QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 99 EEHELTSGPLSILQTATRSHAQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 158
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
GKGK VNKDRF+SKMFLRGDSVI+VL
Sbjct: 159 GGKGKG----VNKDRFVSKMFLRGDSVILVL 185
>gi|399217363|emb|CCF74250.1| unnamed protein product [Babesia microti strain RI]
Length = 103
Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 74/88 (84%), Gaps = 3/88 (3%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 80
GPLS++ V +N+QVLINCRNN+K+L RV+AFDRHCNM+L + REMWT + +G GK+K
Sbjct: 19 GPLSLIAECVMDNSQVLINCRNNRKILARVKAFDRHCNMILVDAREMWT-VKSSGGGKQK 77
Query: 81 ALPVNKDRFISKMFLRGDSVIIVLRNPK 108
VNKDRFISKMFLRGDSVI+VLRNPK
Sbjct: 78 F--VNKDRFISKMFLRGDSVIVVLRNPK 103
>gi|295670567|ref|XP_002795831.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|225677515|gb|EEH15799.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides
brasiliensis Pb03]
gi|226284916|gb|EEH40482.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 114
Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 72/91 (79%), Gaps = 4/91 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E +GPLS+L + ++++QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 26 EEHELTSGPLSILQTATRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
K VNKDRF+SKMFLRGDSVI+VL
Sbjct: 83 -KPKGGKGKGVNKDRFVSKMFLRGDSVILVL 112
>gi|226295357|gb|EEH50777.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides
brasiliensis Pb18]
Length = 114
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 72/91 (79%), Gaps = 4/91 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E +GPLS+L + ++++QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 26 EEHELTSGPLSILQTATRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
K VNKDRF+SKMFLRGDSVI+VL
Sbjct: 83 -KPKGGKGKGVNKDRFVSKMFLRGDSVILVL 112
>gi|67624703|ref|XP_668634.1| small nuclear ribonucleoprotein [Cryptosporidium hominis TU502]
gi|126649020|ref|XP_001388072.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|54659846|gb|EAL38408.1| small nuclear ribonucleoprotein [Cryptosporidium hominis]
gi|126117160|gb|EAZ51260.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
Length = 106
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 80
GPLS+L VK NTQ+L+NCRNN+K+LGRV+AFDRHCN++L + RE+WTE K+GK K
Sbjct: 20 GPLSLLTECVKTNTQILVNCRNNRKILGRVKAFDRHCNLLLTDAREIWTESMKSGK-KGS 78
Query: 81 ALPVNKDRFISKMFLRGDSVIIVLRNP 107
A +NKDRFISK+F+RGDSVI++L++P
Sbjct: 79 AKYINKDRFISKLFVRGDSVILILKSP 105
>gi|154283173|ref|XP_001542382.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus NAm1]
gi|150410562|gb|EDN05950.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus NAm1]
Length = 103
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 71/91 (78%), Gaps = 4/91 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E +GPLS+L + +++ QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 15 EEHELTSGPLSILQTATRSHAQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 71
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
K VNKDRF+SKMFLRGDSVI+VL
Sbjct: 72 -KPKGGKGKGVNKDRFVSKMFLRGDSVILVL 101
>gi|261189633|ref|XP_002621227.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
SLH14081]
gi|225561709|gb|EEH09989.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus
G186AR]
gi|239591463|gb|EEQ74044.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
SLH14081]
gi|239613006|gb|EEQ89993.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
ER-3]
gi|240275314|gb|EER38828.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
Length = 114
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 71/91 (78%), Gaps = 4/91 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E +GPLS+L + +++ QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 26 EEHELTSGPLSILQTATRSHAQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
K VNKDRF+SKMFLRGDSVI+VL
Sbjct: 83 -KPKGGKGKGVNKDRFVSKMFLRGDSVILVL 112
>gi|50787671|emb|CAH04406.1| small nuclear riboprotein Sm D2 [Euplotes vannus]
Length = 113
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/104 (63%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 5 PMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64
P E +EE GPLS+L +VK N Q+L+NCRNN+KLL R +AFDRH NMVLENV
Sbjct: 11 PEEAQRHVPQEETITEGPLSLLTKAVKTNCQILVNCRNNRKLLARCKAFDRHMNMVLENV 70
Query: 65 REMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
EMWTE+PK KGKK PVNK+RFI K+FLRGDSVI+V++NPK
Sbjct: 71 CEMWTEMPKKQKGKKTK-PVNKERFIHKLFLRGDSVILVIKNPK 113
>gi|71031308|ref|XP_765296.1| small nuclear ribonucleoprotein D2 [Theileria parva strain Muguga]
gi|68352252|gb|EAN33013.1| small nuclear ribonucleoprotein D2, putative [Theileria parva]
Length = 106
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/104 (63%), Positives = 77/104 (74%), Gaps = 8/104 (7%)
Query: 5 PMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64
PME DN N GPLS+L V+ N QVLINCRNN+K+L RV+AFDRHCNM+L NV
Sbjct: 11 PMELDNKDNP-----AGPLSILEECVRENCQVLINCRNNRKILARVKAFDRHCNMILTNV 65
Query: 65 REMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
REMWT K G GKKK KDRF+S++FLRGDSVI+VL+NPK
Sbjct: 66 REMWTVRGK-GTGKKKL--ETKDRFLSRLFLRGDSVIVVLKNPK 106
>gi|403253972|ref|XP_003919759.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Saimiri
boliviensis boliviensis]
Length = 117
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 75/90 (83%), Gaps = 1/90 (1%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
NTGPLSVL SVKN+TQVLINCRNNK+LLGRV+AF RHCNMVLENV+EMWTE
Sbjct: 24 LNTGPLSVLTQSVKNSTQVLINCRNNKQLLGRVKAFHRHCNMVLENVKEMWTE-VPKSSK 82
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KK+ PV+KDR +SKMFLRGDSV +VLRNP
Sbjct: 83 GKKSKPVSKDRRVSKMFLRGDSVTVVLRNP 112
>gi|209877963|ref|XP_002140423.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556029|gb|EEA06074.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 111
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%), Gaps = 3/110 (2%)
Query: 1 MSSRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
MS P + + ++ N GPLS+L V+ NTQ+L+NCRNN+K+LGRV+AFDRHCN++
Sbjct: 1 MSIVPTNNEVAEVTKDGPNEGPLSLLSECVRTNTQILVNCRNNRKILGRVKAFDRHCNLL 60
Query: 61 LENVREMWTELPKTGKGKKKALP---VNKDRFISKMFLRGDSVIIVLRNP 107
L +VRE+WTE KT +KK +NKDRFISK+F+RGDSVI++L++P
Sbjct: 61 LTDVREIWTEAVKTNSSQKKKSSNRFINKDRFISKLFVRGDSVILILKSP 110
>gi|281209973|gb|EFA84141.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 667
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 68/88 (77%), Positives = 77/88 (87%)
Query: 8 EDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
E ++E++EF TGPLS+LM SV NTQVLIN RNNKKLLG VRAFDRHCNMVLENV+EM
Sbjct: 5 EQEERDEQKEFETGPLSILMDSVNKNTQVLINVRNNKKLLGTVRAFDRHCNMVLENVKEM 64
Query: 68 WTELPKTGKGKKKALPVNKDRFISKMFL 95
WTE+PKTGKGKKKA PVNKDRFISK+ +
Sbjct: 65 WTEIPKTGKGKKKAKPVNKDRFISKILI 92
>gi|119570508|gb|EAW50123.1| hCG2040270 [Homo sapiens]
Length = 117
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 77/90 (85%), Gaps = 1/90 (1%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTG LSVL SVKNNTQVLINCR+N KLLG V+AF RHCNMVLENV+E WTE+PK+GKG
Sbjct: 24 FNTGQLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFHRHCNMVLENVKETWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KK PVNKD +IS+MFL GD VI+VLRNP
Sbjct: 84 KKSK-PVNKDCYISRMFLHGDLVIVVLRNP 112
>gi|322696181|gb|EFY87977.1| small nuclear ribonucleoprotein Sm D2 [Metarhizium acridum CQMa
102]
Length = 120
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/80 (71%), Positives = 67/80 (83%), Gaps = 1/80 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF +GPLS+L +VK++TQVLI+ RNN+KLL RV+AFDRHCNMVLENV+EMWTE P+
Sbjct: 42 EEHEFTSGPLSILQTAVKSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 101
Query: 74 TGKGKKKALPVNKDRFISKM 93
G KK PVNKDRFISKM
Sbjct: 102 LADG-KKGRPVNKDRFISKM 120
>gi|169779295|ref|XP_001824112.1| small nuclear ribonucleoprotein Sm D2 [Aspergillus oryzae RIB40]
gi|238499931|ref|XP_002381200.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus flavus
NRRL3357]
gi|83772851|dbj|BAE62979.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692953|gb|EED49299.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus flavus
NRRL3357]
gi|391873159|gb|EIT82233.1| small nuclear ribonucleoprotein (snRNP) Sm core protein
[Aspergillus oryzae 3.042]
Length = 115
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 69/91 (75%), Gaps = 4/91 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E GPLS+L + + +TQVLI CR+N++LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 27 EEHELTAGPLSLLQTATRTHTQVLIACRSNRRLLARVKAFDRHCNMVLENVKEMWTE--- 83
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
K VNKDRFISKMFLRGDSVI+VL
Sbjct: 84 -KPKGGKGKGVNKDRFISKMFLRGDSVILVL 113
>gi|212529808|ref|XP_002145061.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
marneffei ATCC 18224]
gi|210074459|gb|EEA28546.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
marneffei ATCC 18224]
Length = 117
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 70/90 (77%), Gaps = 4/90 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E GPLS+L + + +TQVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 26 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 85
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
GKG+ VNKDRFISKM+ S++I+
Sbjct: 86 GGKGRG----VNKDRFISKMYTSPASLLII 111
>gi|344302812|gb|EGW33086.1| hypothetical protein SPAPADRAFT_60395 [Spathaspora passalidarum
NRRL Y-27907]
Length = 112
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/95 (62%), Positives = 77/95 (81%), Gaps = 3/95 (3%)
Query: 12 KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 71
K EE EF GP+S+L +V NNT ++I+CRNN KL+ +V+AFDRHCN+VLENV+E+WTE
Sbjct: 19 KLEEFEFTHGPMSLLQNAVNNNTPIVISCRNNHKLIAKVKAFDRHCNLVLENVKELWTET 78
Query: 72 PKTGKGKK-KALPVNKDRFISKMFLRGDSVIIVLR 105
K KGKK K+ P K+RF+SKMFLRGDSVII+++
Sbjct: 79 VKNNKGKKIKSTP--KERFVSKMFLRGDSVIIIVK 111
>gi|346325342|gb|EGX94939.1| small nuclear ribonucleoprotein Sm D2 [Cordyceps militaris CM01]
Length = 145
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 71/89 (79%), Gaps = 1/89 (1%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
E + + EE EF+ GPLS+L +V+++ QVLI+ RNN+KLL RV+AFDRHCNMVLENV+E
Sbjct: 44 EYEIAQLEEHEFSAGPLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKE 103
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFL 95
MWTE P+ G KK PVNKDRFISKM++
Sbjct: 104 MWTETPRLADG-KKGRPVNKDRFISKMYV 131
>gi|403414237|emb|CCM00937.1| predicted protein [Fibroporia radiculosa]
Length = 114
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/97 (67%), Positives = 75/97 (77%), Gaps = 9/97 (9%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRH----CNMVLENVREMWT 69
EE E + GPLSVL +V+N+TQVLI+ RNNKKLL RV+AFDRH C V + +MWT
Sbjct: 21 EEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSTGKCKRV-QTFVQMWT 79
Query: 70 ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
ELPK GK KK PVNKDRFISKMFLRGDSVI++LRN
Sbjct: 80 ELPK-GKNKK---PVNKDRFISKMFLRGDSVILILRN 112
>gi|126137433|ref|XP_001385240.1| hypothetical protein PICST_60825 [Scheffersomyces stipitis CBS
6054]
gi|126092462|gb|ABN67211.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 112
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 76/94 (80%), Gaps = 1/94 (1%)
Query: 12 KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 71
K EE EF GP+S++ +V NNT ++I+CRNN KL+G+VRAFDRHCN++LENV+E+WTE
Sbjct: 19 KLEEFEFAHGPMSLIQNAVNNNTPIVISCRNNHKLIGKVRAFDRHCNLILENVKELWTET 78
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 105
K KGK ++++RFISK+FLRGDS++I+L+
Sbjct: 79 SKNNKGKATK-SISRERFISKLFLRGDSIVIILK 111
>gi|448118540|ref|XP_004203524.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
gi|448120946|ref|XP_004204107.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
gi|359384392|emb|CCE79096.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
gi|359384975|emb|CCE78510.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
Length = 113
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 76/94 (80%), Gaps = 1/94 (1%)
Query: 12 KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 71
K EE EF GP+S+L +VKN T V+++CRNN KL+ RV+AFDRHCN++LENV+E+WTE
Sbjct: 19 KLEEFEFTYGPMSLLQDAVKNGTPVVVSCRNNHKLVARVKAFDRHCNLILENVKELWTES 78
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 105
+ KG +K ++K+RF+SKMFLRGDSVIIVL+
Sbjct: 79 VRNNKG-QKVNSISKERFVSKMFLRGDSVIIVLK 111
>gi|444721759|gb|ELW62473.1| putative small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 135
Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 70/78 (89%), Gaps = 2/78 (2%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGP SVLM SVKNNTQVLI+C +NKK++G ++AFDRHC+MVLENV+EMWTE+PK+ KG
Sbjct: 24 FNTGPHSVLMQSVKNNTQVLIHC-HNKKVMGHMKAFDRHCDMVLENVKEMWTEVPKSRKG 82
Query: 78 KKKALPVNKDRFISKMFL 95
KK+ PVNKD +ISKMFL
Sbjct: 83 -KKSKPVNKDHYISKMFL 99
>gi|238006980|gb|ACR34525.1| unknown [Zea mays]
gi|414586341|tpg|DAA36912.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
Length = 85
Score = 120 bits (301), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 5/79 (6%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
E + K EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE
Sbjct: 4 ENEAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 63
Query: 67 MWTE-----LPKTGKGKKK 80
MWTE P+ + K++
Sbjct: 64 MWTEDFLSRSPRLARAKRR 82
>gi|146421306|ref|XP_001486603.1| hypothetical protein PGUG_02274 [Meyerozyma guilliermondii ATCC
6260]
gi|146390018|gb|EDK38176.1| hypothetical protein PGUG_02274 [Meyerozyma guilliermondii ATCC
6260]
Length = 112
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/94 (61%), Positives = 76/94 (80%), Gaps = 1/94 (1%)
Query: 12 KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 71
K EE EF GP+S+L ++ NNT V+I+CRNN K++ RV+AFDRHCNMVLENV+E+WTE
Sbjct: 19 KLEEFEFAHGPMSLLQNALDNNTPVVISCRNNHKMVARVKAFDRHCNMVLENVKELWTES 78
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 105
K GKG K V+K+RF+SK+FLRGDSV+IV++
Sbjct: 79 VKNGKG-KVVNSVSKERFVSKLFLRGDSVVIVVK 111
>gi|47215802|emb|CAG02856.1| unnamed protein product [Tetraodon nigroviridis]
Length = 108
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/77 (88%), Positives = 74/77 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 82
Query: 78 KKKALPVNKDRFISKMF 94
KKK+ PVNKDR+ISKMF
Sbjct: 83 KKKSKPVNKDRYISKMF 99
>gi|84994530|ref|XP_951987.1| small nuclear ribonucleoprotein [Theileria annulata strain Ankara]
gi|65302148|emb|CAI74255.1| small nuclear ribonucleoprotein, putative [Theileria annulata]
Length = 106
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 77/107 (71%), Gaps = 8/107 (7%)
Query: 2 SSRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 61
+ ME DN N GPLS+L V+ N QVLINCRNN+K+L RV+AFDRHCNM+L
Sbjct: 8 DTTSMELDNKDNP-----VGPLSILEECVRENCQVLINCRNNRKILARVKAFDRHCNMIL 62
Query: 62 ENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
+VREMWT K G GKKK KDRFI+++FLRGDSVI+VL+NPK
Sbjct: 63 TDVREMWTVRGK-GTGKKKL--ETKDRFITRLFLRGDSVIVVLKNPK 106
>gi|109089899|ref|XP_001087489.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
gi|355745907|gb|EHH50532.1| hypothetical protein EGM_01380 [Macaca fascicularis]
Length = 118
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/89 (80%), Positives = 79/89 (88%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSV SVKNNTQVLINC NNKKLLG V+AFDRH NMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVPTQSVKNNTQVLINCGNNKKLLGHVKAFDRHRNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRN 106
KKK+ PVNKD +ISKMFL DSVI+VLRN
Sbjct: 84 KKKSKPVNKDCYISKMFLHRDSVIVVLRN 112
>gi|397621815|gb|EJK66477.1| hypothetical protein THAOC_12605 [Thalassiosira oceanica]
Length = 112
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 75/91 (82%)
Query: 17 EFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGK 76
+ +GP +VL +VK NTQVL+N RNN KLLGRV+A+DRH N++LE+V+EMWTE K GK
Sbjct: 14 DLKSGPFNVLYKAVKGNTQVLVNVRNNHKLLGRVKAYDRHMNLLLEDVKEMWTEQSKGGK 73
Query: 77 GKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
GKK+ VNKDR++SKMFLRGDSVI+V+ NP
Sbjct: 74 GKKRGTSVNKDRYVSKMFLRGDSVILVVSNP 104
>gi|355562622|gb|EHH19216.1| hypothetical protein EGK_19888 [Macaca mulatta]
Length = 118
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/89 (79%), Positives = 79/89 (88%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSV SVKNNTQVLINC NNKKLLG V+AFDRH NMVLE+V+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVPTQSVKNNTQVLINCGNNKKLLGHVKAFDRHRNMVLEDVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRN 106
KKK+ PVNKD +ISKMFL DSVI+VLRN
Sbjct: 84 KKKSKPVNKDCYISKMFLHRDSVIVVLRN 112
>gi|50423747|ref|XP_460458.1| DEHA2F02156p [Debaryomyces hansenii CBS767]
gi|49656127|emb|CAG88765.1| DEHA2F02156p [Debaryomyces hansenii CBS767]
Length = 115
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Query: 12 KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 71
K EE EF GP+S+L +V N + V+I+CRNN KL+ +V+AFDRHCN++LENV+E+WTE
Sbjct: 19 KLEEFEFTHGPMSLLQNAVNNGSPVVISCRNNHKLIAKVKAFDRHCNLILENVKELWTES 78
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 105
K KGKK +K+RF+SKMFLRGDSV+IVL+
Sbjct: 79 VKNNKGKKIK-STSKERFVSKMFLRGDSVVIVLK 111
>gi|226470770|emb|CAX76818.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
Length = 87
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 70/76 (92%)
Query: 32 NNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFIS 91
N VLINCRNNKKLL RV+AFDRHCNMVLENV+EMWTE+P+ GKGKKK+ PVNKDRFIS
Sbjct: 2 NKCLVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPRPGKGKKKSKPVNKDRFIS 61
Query: 92 KMFLRGDSVIIVLRNP 107
K+FLRGDSVI+VLRNP
Sbjct: 62 KLFLRGDSVILVLRNP 77
>gi|154310658|ref|XP_001554660.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
Length = 116
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 69/81 (85%), Gaps = 3/81 (3%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF +GPLS+L +V+++ QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE P+
Sbjct: 27 EEHEFTSGPLSLLQAAVRSHGQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 86
Query: 74 -TGKGKKKALPVNKDRFISKM 93
+G GK + PVNKDRFISK+
Sbjct: 87 LSGGGKGR--PVNKDRFISKI 105
>gi|260942737|ref|XP_002615667.1| hypothetical protein CLUG_04549 [Clavispora lusitaniae ATCC 42720]
gi|238850957|gb|EEQ40421.1| hypothetical protein CLUG_04549 [Clavispora lusitaniae ATCC 42720]
Length = 112
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 75/94 (79%), Gaps = 5/94 (5%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF GP+SV+ S+ NNT V+++CRNN K++G+V+AFDRHCN++LE+V+E+WTE +
Sbjct: 21 EEFEFTHGPMSVIQSSMNNNTPVVVHCRNNHKVIGKVKAFDRHCNLILEDVKELWTETTR 80
Query: 74 TGKGK--KKALPVNKDRFISKMFLRGDSVIIVLR 105
KG K A +K+RFISK+FLRGDSVIIVL+
Sbjct: 81 NSKGAVIKTA---SKERFISKLFLRGDSVIIVLK 111
>gi|255724860|ref|XP_002547359.1| small nuclear ribonucleoprotein Sm D2 [Candida tropicalis MYA-3404]
gi|240135250|gb|EER34804.1| small nuclear ribonucleoprotein Sm D2 [Candida tropicalis MYA-3404]
Length = 112
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 74/92 (80%), Gaps = 1/92 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EFN GP+S+L +VKNNT ++I+CRNN KL+G+VRAFDRHCN+VLENV+++W+E
Sbjct: 21 EEYEFNHGPMSILNNAVKNNTPIIISCRNNHKLIGKVRAFDRHCNLVLENVKDLWSE-DI 79
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 105
KK V K+RFISK+FLRGDSVII+L+
Sbjct: 80 KNNKGKKIKSVPKERFISKLFLRGDSVIIILK 111
>gi|448517223|ref|XP_003867742.1| Smd2 core Sm protein [Candida orthopsilosis Co 90-125]
gi|380352081|emb|CCG22305.1| Smd2 core Sm protein [Candida orthopsilosis]
Length = 111
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 78/103 (75%), Gaps = 2/103 (1%)
Query: 3 SRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 62
S E + K EE EF GP+S++ + K NT V+I+CRNN KL+G++RAFDRHCN+VLE
Sbjct: 10 SELTEFELAKLEEFEFLHGPMSLINQAQKQNTPVIISCRNNHKLVGKIRAFDRHCNLVLE 69
Query: 63 NVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 105
NV+E+WTE K + K+ V+++RFISKMFLRGDSVII+L+
Sbjct: 70 NVKELWTETVKNEFNQTKS--VSRERFISKMFLRGDSVIIILK 110
>gi|354543718|emb|CCE40440.1| hypothetical protein CPAR2_104760 [Candida parapsilosis]
Length = 111
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 78/103 (75%), Gaps = 2/103 (1%)
Query: 3 SRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 62
S E + K EE EF GP+S++ + K NT V+I+CRNN KL+G++RAFDRHCN+VLE
Sbjct: 10 SELTELELAKLEEFEFLHGPMSLINQAQKENTPVIISCRNNHKLVGKIRAFDRHCNLVLE 69
Query: 63 NVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 105
NV+E+WTE K + K+ V+++RFISK+FLRGDSVII+L+
Sbjct: 70 NVKELWTETVKNEFNQTKS--VSRERFISKLFLRGDSVIIILK 110
>gi|12718491|emb|CAC28820.1| probable small nuclear ribonucleoprotein chain D2 [Neurospora
crassa]
Length = 126
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 67/83 (80%), Gaps = 1/83 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF+ GPLS+L +V++++QVLI+ RN +K+L RV+AFDRH NMVLENV+EMWTE P+
Sbjct: 28 EEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPR 87
Query: 74 TGKGKKKALPVNKDRFISKMFLR 96
G KK PVNKDRFISKMF+
Sbjct: 88 LANG-KKGKPVNKDRFISKMFVH 109
>gi|403222339|dbj|BAM40471.1| small nuclear ribonucleoprotein [Theileria orientalis strain
Shintoku]
Length = 105
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 76/106 (71%), Gaps = 9/106 (8%)
Query: 3 SRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 62
S ME DN + +GPLS+L V+ N QVLINCRNN+K+L RV+AFDRH NM+L
Sbjct: 9 SSSMEVDN-----RDSPSGPLSILEECVRENCQVLINCRNNRKILARVKAFDRHFNMILT 63
Query: 63 NVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
+VREMWT KG KK + KDRFI+++FLRGDSVI+VL+NPK
Sbjct: 64 DVREMWTV---KSKGNKKKMET-KDRFITRLFLRGDSVIVVLKNPK 105
>gi|241951640|ref|XP_002418542.1| small nuclear ribonucleoprotein sm d2, putative; small nuclear
riboucleoprotein (snrnp) core protein d2, putative
[Candida dubliniensis CD36]
gi|223641881|emb|CAX43844.1| small nuclear ribonucleoprotein sm d2, putative [Candida
dubliniensis CD36]
Length = 112
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 75/92 (81%), Gaps = 1/92 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EFN GP+S+L +VKN+T ++I+CRNN KL+G+VRAFDRHCN+VLENV+E+WTE
Sbjct: 21 EEYEFNHGPMSILNNAVKNDTPIIISCRNNHKLIGKVRAFDRHCNLVLENVKELWTE-DI 79
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 105
KK ++K+RFISK+FLRGDSVII+L+
Sbjct: 80 KNNKGKKIKSISKERFISKLFLRGDSVIIILK 111
>gi|238882386|gb|EEQ46024.1| small nuclear ribonucleoprotein Sm D2 [Candida albicans WO-1]
Length = 112
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 75/92 (81%), Gaps = 1/92 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EFN GP+S+L +VKN++ ++I+CRNN KL+G+VRAFDRHCN+VLENV+E+WTE
Sbjct: 21 EEYEFNHGPMSILNNAVKNDSPIIISCRNNHKLIGKVRAFDRHCNLVLENVKELWTE-DI 79
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 105
KK ++K+RFISKMFLRGDSVII+L+
Sbjct: 80 KNNKGKKIKSISKERFISKMFLRGDSVIIILK 111
>gi|259487148|tpe|CBF85589.1| TPA: small nuclear ribonucleoprotein SmD2, putative
(AFU_orthologue; AFUA_5G12910) [Aspergillus nidulans
FGSC A4]
Length = 113
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 69/89 (77%), Gaps = 4/89 (4%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
E + + EE E + GPLS+L +V+ NTQVLI+ R+N+KLL RV+AFDRH NMVLENV+E
Sbjct: 19 EYEIAQIEEYELSNGPLSLLQTAVRTNTQVLISLRSNRKLLARVKAFDRHSNMVLENVKE 78
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFL 95
MWTE K GKG+ PVNKDRFISKM+L
Sbjct: 79 MWTEPQKGGKGR----PVNKDRFISKMYL 103
>gi|444706234|gb|ELW47583.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 86
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/81 (80%), Positives = 75/81 (92%)
Query: 27 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 86
M SVKNNTQVLINCRNN+KLLG V+AF+RHCN+VLEN++EMWTE+PK+GKGKKK+ PVNK
Sbjct: 1 MKSVKNNTQVLINCRNNEKLLGHVKAFNRHCNVVLENLKEMWTEVPKSGKGKKKSKPVNK 60
Query: 87 DRFISKMFLRGDSVIIVLRNP 107
D +ISKMFL GDSVIIVL NP
Sbjct: 61 DCYISKMFLHGDSVIIVLGNP 81
>gi|149245030|ref|XP_001527049.1| small nuclear ribonucleoprotein Sm D2 [Lodderomyces elongisporus
NRRL YB-4239]
gi|146449443|gb|EDK43699.1| small nuclear ribonucleoprotein Sm D2 [Lodderomyces elongisporus
NRRL YB-4239]
Length = 110
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 77/103 (74%), Gaps = 3/103 (2%)
Query: 3 SRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 62
S E++ K EE EF GP+S++ + N ++I+CRNN KL+G+VRAFDRHCN+VLE
Sbjct: 10 SELTEKELAKLEEFEFLHGPMSLIHQAQTENLPIVISCRNNHKLVGKVRAFDRHCNLVLE 69
Query: 63 NVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 105
NV+E+WTE T GK K +P ++RFISKMFLRGDSVIIV++
Sbjct: 70 NVKELWTE-KVTEFGKTKNVP--RERFISKMFLRGDSVIIVVK 109
>gi|326472609|gb|EGD96618.1| small nuclear ribonucleoprotein Sm D2 [Trichophyton tonsurans CBS
112818]
gi|326483579|gb|EGE07589.1| small nuclear ribonucleoprotein Sm D2 [Trichophyton equinum CBS
127.97]
Length = 129
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 71/117 (60%), Gaps = 30/117 (25%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E TGPLS+L + + ++QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 15 EEHELTTGPLSILQTATRAHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 71
Query: 74 TGKGKKKALPVNKDRFISKM--------------------------FLRGDSVIIVL 104
K VNKDRFISKM FLRGDSVI+VL
Sbjct: 72 -KPKGGKGKGVNKDRFISKMYVYTKLARTFPSHRICDNTILTRPSRFLRGDSVILVL 127
>gi|296418693|ref|XP_002838960.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634953|emb|CAZ83151.1| unnamed protein product [Tuber melanosporum]
Length = 96
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 67/91 (73%), Gaps = 17/91 (18%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
E+ EF+ GPLS+L +V+++ QVLI+CRNN+KLL RV+AFDRHCNMVLEN R
Sbjct: 21 EKYEFSAGPLSILQTAVRSHNQVLISCRNNRKLLARVKAFDRHCNMVLENGR-------- 72
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
PVNKDRFISKMFLRGDSVI+VL
Sbjct: 73 ---------PVNKDRFISKMFLRGDSVILVL 94
>gi|320583711|gb|EFW97924.1| Core Sm protein Sm D2 [Ogataea parapolymorpha DL-1]
Length = 110
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 71/93 (76%), Gaps = 4/93 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
E+ EFN GPL +L ++ NN VLI+ RNN KLL +V+AFDRHCNM+LENV+E+WTE
Sbjct: 21 EDYEFNNGPLRLLTNAIHNNATVLISLRNNHKLLAKVKAFDRHCNMILENVKEIWTETNP 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
+ KK + ++RF+SKMFLRGDSVI+VL++
Sbjct: 81 DDRNKK----MMRERFVSKMFLRGDSVIVVLKH 109
>gi|344232757|gb|EGV64630.1| Sm-like ribonucleo protein [Candida tenuis ATCC 10573]
Length = 137
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 72/88 (81%), Gaps = 3/88 (3%)
Query: 19 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGK 78
N GP+S+L +V NNT V+I+CRNN KL+ +V+AFDRHCN++LENV+E+WTE K KG
Sbjct: 51 NHGPMSLLKEAVANNTPVVISCRNNHKLVAKVKAFDRHCNLILENVKELWTEPVKNNKG- 109
Query: 79 KKALPVN-KDRFISKMFLRGDSVIIVLR 105
K + VN K+RF+SK+FLRGDSVI+V++
Sbjct: 110 -KVIKVNQKERFVSKLFLRGDSVIVVVK 136
>gi|351699571|gb|EHB02490.1| Small nuclear ribonucleoprotein Sm D2 [Heterocephalus glaber]
Length = 91
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Query: 35 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 94
QVLINC +NKKLLG +AFDR CNMVLEN++EMWTE+PK G+GKKK PV KD +ISK+F
Sbjct: 15 QVLINC-HNKKLLGCAKAFDRDCNMVLENMKEMWTEVPKRGQGKKKFKPVRKDHYISKIF 73
Query: 95 LRGDSVIIVLRNP 107
L GDSVI+VL+NP
Sbjct: 74 LHGDSVIMVLQNP 86
>gi|403287226|ref|XP_003934853.1| PREDICTED: uncharacterized protein LOC101043343 [Saimiri
boliviensis boliviensis]
Length = 269
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/100 (69%), Positives = 83/100 (83%), Gaps = 1/100 (1%)
Query: 8 EDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
E+ K+E EEFNTGPLSVL SVKNNTQ L+NC +NKKLL V+A DRHCNMVLEN EM
Sbjct: 14 EELQKHEGEEFNTGPLSVLTKSVKNNTQGLLNCHSNKKLLDPVKASDRHCNMVLEN-EEM 72
Query: 68 WTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
TE+PK+GKGKKK+ PV+KDR+I+KMFL G+ I+VLR+P
Sbjct: 73 RTEVPKSGKGKKKSKPVDKDRYIAKMFLCGNWAIVVLRHP 112
>gi|366992940|ref|XP_003676235.1| hypothetical protein NCAS_0D02930 [Naumovozyma castellii CBS 4309]
gi|342302101|emb|CCC69874.1| hypothetical protein NCAS_0D02930 [Naumovozyma castellii CBS 4309]
Length = 110
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 80/111 (72%), Gaps = 11/111 (9%)
Query: 1 MSSRPMEE---DNVKNEEE-EFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRH 56
+S+RP E D +K EE EF GP+S++ S+ + V+I+ RNN K++ RV+AFDRH
Sbjct: 5 LSNRPKSELTRDELKQLEEFEFKHGPMSLITDSMNSKVPVIISLRNNHKIIARVKAFDRH 64
Query: 57 CNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
CNMVLENV+E+WTE K GK VN++RFISK+FLRGDSVI++++ P
Sbjct: 65 CNMVLENVKELWTE--KKGKS-----TVNRERFISKLFLRGDSVIVIVKAP 108
>gi|365990359|ref|XP_003672009.1| hypothetical protein NDAI_0I01970 [Naumovozyma dairenensis CBS 421]
gi|343770783|emb|CCD26766.1| hypothetical protein NDAI_0I01970 [Naumovozyma dairenensis CBS 421]
Length = 110
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 72/94 (76%), Gaps = 7/94 (7%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF GP+S++ SV + V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE
Sbjct: 22 EEFEFKHGPMSLINDSVISKVPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--- 78
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KGK+ +N++RFISK+FLRGDS+I++L+ P
Sbjct: 79 -KKGKQ---IINRERFISKLFLRGDSIIVILKAP 108
>gi|67470740|ref|XP_651333.1| small nuclear ribonucleoprotein Sm D2 [Entamoeba histolytica
HM-1:IMSS]
gi|167383658|ref|XP_001736617.1| small nuclear ribonucleoprotein sm D2 [Entamoeba dispar SAW760]
gi|167391078|ref|XP_001739631.1| small nuclear ribonucleoprotein sm D2 [Entamoeba dispar SAW760]
gi|56468055|gb|EAL45945.1| small nuclear ribonucleoprotein Sm D2, putative [Entamoeba
histolytica HM-1:IMSS]
gi|165896637|gb|EDR23988.1| small nuclear ribonucleoprotein sm D2, putative [Entamoeba dispar
SAW760]
gi|165900902|gb|EDR27123.1| small nuclear ribonucleoprotein sm D2, putative [Entamoeba dispar
SAW760]
gi|407040095|gb|EKE39972.1| LSM domain containing protein [Entamoeba nuttalli P19]
gi|449709579|gb|EMD48820.1| small nuclear ribonucleoprotein sm D2, putative [Entamoeba
histolytica KU27]
Length = 101
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 80
GP +L +V+ + QVLINCRNNKKL+ RV+AFDRH NMVLEN++E+WTE+ + GK K
Sbjct: 11 GPFQLLTEAVEKHGQVLINCRNNKKLICRVKAFDRHFNMVLENIKEIWTEMKRDSDGKLK 70
Query: 81 ALPVNKDRFISKMFLRGDSVIIVLRNP 107
A R ISKMFLRGDSVI++++NP
Sbjct: 71 AKLCQ--RSISKMFLRGDSVIVIVKNP 95
>gi|327352187|gb|EGE81044.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
ATCC 18188]
Length = 131
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 68/93 (73%), Gaps = 4/93 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E +GPLS+L + +++ QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 26 EEHELTSGPLSILQTATRSHAQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
K VNKDRF+SKM+++ ++ ++ N
Sbjct: 83 -KPKGGKGKGVNKDRFVSKMYVQTNTCLLATGN 114
>gi|70942126|ref|XP_741266.1| small nuclear ribonucleoprotein [Plasmodium chabaudi chabaudi]
gi|70945863|ref|XP_742706.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56519539|emb|CAH84536.1| small nuclear ribonucleoprotein, putative [Plasmodium chabaudi
chabaudi]
gi|56521836|emb|CAH78030.1| hypothetical protein PC000715.02.0 [Plasmodium chabaudi chabaudi]
Length = 101
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 80/108 (74%), Gaps = 7/108 (6%)
Query: 1 MSSRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
M S + E+N N E+ GPL +L VK+N QVLINCRNN+KLLGRV+AFDRHCN++
Sbjct: 1 MKSETVVEENRDNPED----GPLGLLSECVKDNAQVLINCRNNRKLLGRVKAFDRHCNLL 56
Query: 61 LENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
L VRE+W E+ K K KKK NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 57 LTEVREIWVEVVKDKKKKKKI---NKDRYISILFLRGDSVILILRNPK 101
>gi|255718831|ref|XP_002555696.1| KLTH0G15246p [Lachancea thermotolerans]
gi|238937080|emb|CAR25259.1| KLTH0G15246p [Lachancea thermotolerans CBS 6340]
Length = 108
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 71/94 (75%), Gaps = 7/94 (7%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF GP+S++ ++ + V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE
Sbjct: 21 EEFEFKHGPMSLINDAMVSKVPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--- 77
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
K KK VN++RFISK+FLRGDS+IIVLR P
Sbjct: 78 --KQNKKT--VNRERFISKLFLRGDSIIIVLRAP 107
>gi|403216466|emb|CCK70963.1| hypothetical protein KNAG_0F03010 [Kazachstania naganishii CBS
8797]
Length = 110
Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 69/94 (73%), Gaps = 7/94 (7%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E GP+S++ +V + T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE
Sbjct: 22 EEFELRHGPMSLINEAVISRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--- 78
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KK NK+RFISK+FLRGDSVII+L+ P
Sbjct: 79 ----KKHNKTTNKERFISKLFLRGDSVIIILKAP 108
>gi|440292632|gb|ELP85819.1| small nuclear ribonucleoprotein Sm D2, putative [Entamoeba invadens
IP1]
Length = 100
Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 68/88 (77%), Gaps = 2/88 (2%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 80
GP +L +V+ ++QV+INCRNNKKL+ RV+AFDRH NMVLENV+E WTE+ K +GK K
Sbjct: 11 GPFQLLTEAVEKHSQVIINCRNNKKLVCRVKAFDRHFNMVLENVKEYWTEMQKMPEGKPK 70
Query: 81 ALPVNKDRFISKMFLRGDSVIIVLRNPK 108
P R +SKMFLRGDSVIIV++ P+
Sbjct: 71 --PKTCHRNVSKMFLRGDSVIIVVKAPE 96
>gi|363750444|ref|XP_003645439.1| hypothetical protein Ecym_3115 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889073|gb|AET38622.1| Hypothetical protein Ecym_3115 [Eremothecium cymbalariae
DBVPG#7215]
Length = 108
Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 72/94 (76%), Gaps = 7/94 (7%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF GP+S+L ++ + + V+I+ RNN K++ R+++FDRHCNMVLENV+E+WTE
Sbjct: 21 EEFEFKHGPMSLLHDAMTSRSPVIISLRNNHKIIARIKSFDRHCNMVLENVKELWTE--- 77
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
+GKK NK+RFISK+FLRGDSVI+VL+ P
Sbjct: 78 -KEGKKLT---NKERFISKLFLRGDSVIVVLKAP 107
>gi|45201373|ref|NP_986943.1| AGR277Wp [Ashbya gossypii ATCC 10895]
gi|44986307|gb|AAS54767.1| AGR277Wp [Ashbya gossypii ATCC 10895]
gi|374110193|gb|AEY99098.1| FAGR277Wp [Ashbya gossypii FDAG1]
Length = 108
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 72/94 (76%), Gaps = 7/94 (7%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF GP+S++ ++ T V+I+ RNN K++ RV++FDRHCNMVLENV+E+W+E
Sbjct: 21 EEFEFKHGPMSLIQEAMTARTPVIISLRNNHKIIARVKSFDRHCNMVLENVKEIWSE--- 77
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
+GKK + NK+RFISK+FLRGDSVI+VL+ P
Sbjct: 78 -REGKKIS---NKERFISKLFLRGDSVIVVLKAP 107
>gi|82915132|ref|XP_728974.1| small nuclear ribonucleoprotein [Plasmodium yoelii yoelii 17XNL]
gi|23485713|gb|EAA20539.1| small nuclear ribonucleoprotein. [Plasmodium yoelii yoelii]
Length = 101
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 78/108 (72%), Gaps = 7/108 (6%)
Query: 1 MSSRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
M S E+N N E GPL +L VK+N QVLINCRNN+KLLGRV+AFDRHCN++
Sbjct: 1 MKSETANEENRDNPE----NGPLGLLSECVKDNAQVLINCRNNRKLLGRVKAFDRHCNLL 56
Query: 61 LENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
L VRE+W E+ K K KKK NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 57 LTEVREIWVEIIKDKKKKKKI---NKDRYISILFLRGDSVILILRNPK 101
>gi|302652082|ref|XP_003017901.1| small nuclear ribonucleoprotein SmD2, putative [Trichophyton
verrucosum HKI 0517]
gi|291181486|gb|EFE37256.1| small nuclear ribonucleoprotein SmD2, putative [Trichophyton
verrucosum HKI 0517]
Length = 111
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/80 (63%), Positives = 60/80 (75%), Gaps = 4/80 (5%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E TGPLS+L + + ++QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 36 EEHELTTGPLSILQTATRAHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 92
Query: 74 TGKGKKKALPVNKDRFISKM 93
K VNKDRFISKM
Sbjct: 93 -KPKGGKGKGVNKDRFISKM 111
>gi|444729289|gb|ELW69714.1| Deleted in malignant brain tumors 1 protein [Tupaia chinensis]
Length = 1650
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 61/78 (78%), Positives = 72/78 (92%)
Query: 29 SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 88
++KN TQVLINCRNNKKLLG V+AFDRH NMVLEN++E+WTE+PK+GKGKKK+ PVNKDR
Sbjct: 1567 TLKNITQVLINCRNNKKLLGHVKAFDRHRNMVLENMKEIWTEVPKSGKGKKKSKPVNKDR 1626
Query: 89 FISKMFLRGDSVIIVLRN 106
+ISKMFL GDSVI+VL N
Sbjct: 1627 YISKMFLCGDSVIVVLWN 1644
>gi|124801422|ref|XP_001349689.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
gi|3845296|gb|AAC71962.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 101
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/108 (59%), Positives = 79/108 (73%), Gaps = 7/108 (6%)
Query: 1 MSSRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
M S E+N N E+ GPL +L VK+N QVLINCRNN+K+LGRV+AFDRHCN++
Sbjct: 1 MKSEVTIEENRDNPED----GPLGLLSECVKDNAQVLINCRNNRKILGRVKAFDRHCNLL 56
Query: 61 LENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
L VRE+W E+ K K KKK NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 57 LTGVREIWVEVVKDKKKKKKI---NKDRYISILFLRGDSVILILRNPK 101
>gi|254582138|ref|XP_002497054.1| ZYRO0D14366p [Zygosaccharomyces rouxii]
gi|238939946|emb|CAR28121.1| ZYRO0D14366p [Zygosaccharomyces rouxii]
Length = 110
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 68/90 (75%), Gaps = 7/90 (7%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
F GPLS++ SV V+I+ RNN K++ RV+AFDRHCNM+LENV+E+WTE KG
Sbjct: 26 FKNGPLSLINDSVTTKNPVIISLRNNHKIIARVKAFDRHCNMILENVKELWTE----KKG 81
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
K+ VNK+RFISK+FLRGDSVI++L+ P
Sbjct: 82 KR---VVNKERFISKLFLRGDSVIVILKAP 108
>gi|68071819|ref|XP_677823.1| small nuclear ribonucleoprotein [Plasmodium berghei strain ANKA]
gi|56498082|emb|CAH95523.1| small nuclear ribonucleoprotein, putative [Plasmodium berghei]
Length = 101
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/108 (59%), Positives = 78/108 (72%), Gaps = 7/108 (6%)
Query: 1 MSSRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
M + E+N N E GPL +L VK+N QVLINCRNN+KLLGRV+AFDRHCN++
Sbjct: 1 MKTETPTEENRDNPE----NGPLGLLSECVKDNAQVLINCRNNRKLLGRVKAFDRHCNLL 56
Query: 61 LENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
L VRE+W E+ K K KKK NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 57 LTEVREIWVEVIKDKKKKKKI---NKDRYISILFLRGDSVILILRNPK 101
>gi|156093647|ref|XP_001612862.1| small nuclear ribonucleoprotein Sm D2 [Plasmodium vivax Sal-1]
gi|221052951|ref|XP_002257850.1| small nuclear ribonucleoprotein [Plasmodium knowlesi strain H]
gi|148801736|gb|EDL43135.1| small nuclear ribonucleoprotein Sm D2, putative [Plasmodium vivax]
gi|193807682|emb|CAQ38386.1| small nuclear ribonucleoprotein, putative [Plasmodium knowlesi
strain H]
gi|390371035|dbj|GAB64916.1| small nuclear ribonucleoprotein Sm D2 [Plasmodium cynomolgi strain
B]
Length = 101
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/108 (58%), Positives = 78/108 (72%), Gaps = 7/108 (6%)
Query: 1 MSSRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
M + E+N N E+ GPL +L VK+N QVLINCRNN+KLL RV+AFDRHCN++
Sbjct: 1 MKTETTVEENRDNPED----GPLGLLSECVKDNAQVLINCRNNRKLLARVKAFDRHCNLL 56
Query: 61 LENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
L VRE+W E+ K K KKK NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 57 LTEVREIWVEVVKDKKKKKKI---NKDRYISILFLRGDSVILILRNPK 101
>gi|444315235|ref|XP_004178275.1| hypothetical protein TBLA_0A09730 [Tetrapisispora blattae CBS 6284]
gi|387511314|emb|CCH58756.1| hypothetical protein TBLA_0A09730 [Tetrapisispora blattae CBS 6284]
Length = 109
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 72/94 (76%), Gaps = 7/94 (7%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF GP+S++ ++ + T ++I+ RNN K++ RV+AFD+HCNMVLENV+E+WTE
Sbjct: 21 EEFEFKHGPMSLINDALISKTPIIISLRNNHKIIARVKAFDKHCNMVLENVKELWTE--- 77
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
G K +NK+RFISK+FLRGDSVI++L++P
Sbjct: 78 -RNGNK---LINKERFISKLFLRGDSVIVILKSP 107
>gi|410074971|ref|XP_003955068.1| hypothetical protein KAFR_0A04970 [Kazachstania africana CBS 2517]
gi|372461650|emb|CCF55933.1| hypothetical protein KAFR_0A04970 [Kazachstania africana CBS 2517]
Length = 114
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 67/90 (74%), Gaps = 7/90 (7%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
F GPLS++ SV V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE K GK
Sbjct: 30 FKHGPLSLINDSVLTRRPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--KKGKS 87
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
VN++RFISK+FLRGDSVI+VL+ P
Sbjct: 88 -----LVNRERFISKLFLRGDSVIVVLKAP 112
>gi|116208252|ref|XP_001229935.1| predicted protein [Chaetomium globosum CBS 148.51]
gi|88184016|gb|EAQ91484.1| predicted protein [Chaetomium globosum CBS 148.51]
Length = 103
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 63/80 (78%), Gaps = 2/80 (2%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
E E + GPLS+L +V++++QVLI+ R+N+KLL RV+AFDRHCNM+LENV+EMWTE P
Sbjct: 26 ENWEMSNGPLSLLQTAVRSHSQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTETP- 84
Query: 74 TGKGKKKALPVNKDRFISKM 93
KK PVNKDRFISKM
Sbjct: 85 -VHNGKKGRPVNKDRFISKM 103
>gi|320037519|gb|EFW19456.1| small nuclear ribonucleoprotein Sm D2 [Coccidioides posadasii str.
Silveira]
Length = 100
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 60/79 (75%), Gaps = 4/79 (5%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E TGPLS+L + ++++QVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 26 EEHELTTGPLSILQTATRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 74 TGKGKKKALPVNKDRFISK 92
K VNKDRF+SK
Sbjct: 83 -KPKGGKGKGVNKDRFVSK 100
>gi|328350738|emb|CCA37138.1| Probable small nuclear ribonucleoprotein Sm D2 [Komagataella
pastoris CBS 7435]
Length = 108
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 67/94 (71%), Gaps = 7/94 (7%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
E EF GP+S+L + + V+I+ RN+ KL+ +V+AFDRHCNMVLENV+E WT++
Sbjct: 21 EAYEFQYGPMSILTTATNTQSTVIISLRNDHKLIAKVKAFDRHCNMVLENVKEFWTDI-- 78
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
G K V ++RF+SKMFLRGDSV+++L++
Sbjct: 79 -NNGTK----VTRERFVSKMFLRGDSVVVILKHS 107
>gi|367005899|ref|XP_003687681.1| hypothetical protein TPHA_0K01130 [Tetrapisispora phaffii CBS 4417]
gi|357525986|emb|CCE65247.1| hypothetical protein TPHA_0K01130 [Tetrapisispora phaffii CBS 4417]
Length = 109
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 68/90 (75%), Gaps = 7/90 (7%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
F GP+S++ S+ T V+I+ RNN K++ RV+AFD+HCNMVLENV+E+WTE K
Sbjct: 25 FKHGPMSLINDSMIAKTPVIISLRNNHKIIARVKAFDKHCNMVLENVKELWTE-----KN 79
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
K K +NK+RFISK+FLRGDSVIIVL+ P
Sbjct: 80 KDKV--INKERFISKLFLRGDSVIIVLKAP 107
>gi|367016959|ref|XP_003682978.1| hypothetical protein TDEL_0G04000 [Torulaspora delbrueckii]
gi|359750641|emb|CCE93767.1| hypothetical protein TDEL_0G04000 [Torulaspora delbrueckii]
Length = 109
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 67/87 (77%), Gaps = 7/87 (8%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 80
GPLS++ SV + T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE +G K
Sbjct: 28 GPLSLINDSVVSKTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE----KRGNKA 83
Query: 81 ALPVNKDRFISKMFLRGDSVIIVLRNP 107
NK+RFISK+FLRGDSVI+VL+ P
Sbjct: 84 E---NKERFISKLFLRGDSVIVVLKAP 107
>gi|254566467|ref|XP_002490344.1| Core Sm protein Sm D2 [Komagataella pastoris GS115]
gi|238030140|emb|CAY68063.1| Core Sm protein Sm D2 [Komagataella pastoris GS115]
Length = 124
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 67/94 (71%), Gaps = 7/94 (7%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
E EF GP+S+L + + V+I+ RN+ KL+ +V+AFDRHCNMVLENV+E WT++
Sbjct: 37 EAYEFQYGPMSILTTATNTQSTVIISLRNDHKLIAKVKAFDRHCNMVLENVKEFWTDI-- 94
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
G K V ++RF+SKMFLRGDSV+++L++
Sbjct: 95 -NNGTK----VTRERFVSKMFLRGDSVVVILKHS 123
>gi|385303470|gb|EIF47543.1| small nuclear ribonucleoprotein sm d2 [Dekkera bruxellensis
AWRI1499]
Length = 136
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 67/91 (73%), Gaps = 4/91 (4%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
E+ EFN GP+ +L +VK+ + +LI+ RNN KL+ +V+AFDRHCNM+LENVRE W E
Sbjct: 21 EQYEFNHGPMRLLSKAVKDXSTILISLRNNHKLIAKVKAFDRHCNMILENVREFWNETXP 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
+ +K + ++RF+ KMFLRGDSVI++L
Sbjct: 81 NDRKRK----IVRERFVLKMFLRGDSVIVIL 107
>gi|156840670|ref|XP_001643714.1| hypothetical protein Kpol_1009p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156114337|gb|EDO15856.1| hypothetical protein Kpol_1009p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 109
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 68/90 (75%), Gaps = 7/90 (7%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
F GP+S++ S+ T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE KG
Sbjct: 25 FKHGPMSLIDESMVLRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE----KKG 80
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
K +NK+RFISK+FLRGDS+I++L+ P
Sbjct: 81 NKT---INKERFISKLFLRGDSIIVILKAP 107
>gi|6323305|ref|NP_013377.1| Smd2p [Saccharomyces cerevisiae S288c]
gi|6226704|sp|Q06217.2|SMD2_YEAST RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|2340971|gb|AAB67368.1| Ylr275wp [Saccharomyces cerevisiae]
gi|151940982|gb|EDN59363.1| Sm D2 [Saccharomyces cerevisiae YJM789]
gi|190405334|gb|EDV08601.1| small nuclear ribonucleoprotein Sm D2 [Saccharomyces cerevisiae
RM11-1a]
gi|259148258|emb|CAY81505.1| Smd2p [Saccharomyces cerevisiae EC1118]
gi|285813692|tpg|DAA09588.1| TPA: Smd2p [Saccharomyces cerevisiae S288c]
gi|349579983|dbj|GAA25144.1| K7_Smd2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 110
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 67/87 (77%), Gaps = 7/87 (8%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 80
GP+S++ ++ T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE K GK
Sbjct: 29 GPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--KKGKN--- 83
Query: 81 ALPVNKDRFISKMFLRGDSVIIVLRNP 107
+N++RFISK+FLRGDSVI+VL+ P
Sbjct: 84 --VINRERFISKLFLRGDSVIVVLKTP 108
>gi|50287515|ref|XP_446187.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525494|emb|CAG59111.1| unnamed protein product [Candida glabrata]
Length = 110
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 66/90 (73%), Gaps = 7/90 (7%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
F GP+S++ ++ V+I+ RNN KL+ RV+AFDRHCN+VLENV+E+WTE
Sbjct: 26 FKHGPMSLINDAMITRNPVIISLRNNHKLIARVKAFDRHCNLVLENVKELWTE------- 78
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KK +N++RFISK+FLRGDSVI++L+ P
Sbjct: 79 KKNKQTINRERFISKLFLRGDSVIVILKAP 108
>gi|145509212|ref|XP_001440550.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407767|emb|CAK73153.1| unnamed protein product [Paramecium tetraurelia]
Length = 152
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 64/106 (60%), Gaps = 14/106 (13%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE GP +L +++ +NTQ + RNN+K LGRV+AFDRH NM+LEN+ EMW E+ K
Sbjct: 50 EEATLEKGPFGLLTITMNHNTQAFLELRNNRKHLGRVKAFDRHMNMILENLTEMWIEISK 109
Query: 74 TGKGKKKALPVNKDR-----------FISKMFLRGDSVIIVLRNPK 108
KGK P K R +I KMFLRGDSVI LRN K
Sbjct: 110 ETKGKS---PCYKQRKIQNQYKIIFYYIPKMFLRGDSVIYTLRNLK 152
>gi|50306997|ref|XP_453476.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642610|emb|CAH00572.1| KLLA0D09284p [Kluyveromyces lactis]
Length = 110
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 69/93 (74%), Gaps = 7/93 (7%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE E GP+S++ S+ T V+I+ RNN KL+ RV++FD+HCNMVLENV+E+WTE
Sbjct: 25 EEFEMKYGPMSLIRESMLQRTPVIISLRNNHKLIARVKSFDKHCNMVLENVKEIWTE--- 81
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
GKK VN++RF++K+FLRGDSVIIV++
Sbjct: 82 NVNGKK----VNRERFVAKLFLRGDSVIIVVKT 110
>gi|392297783|gb|EIW08882.1| Smd2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 80
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 59/74 (79%), Gaps = 7/74 (9%)
Query: 34 TQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 93
T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE K GK +N++RFISK+
Sbjct: 12 TPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--KKGKN-----VINRERFISKL 64
Query: 94 FLRGDSVIIVLRNP 107
FLRGDSVI+VL+ P
Sbjct: 65 FLRGDSVIVVLKTP 78
>gi|403272537|ref|XP_003928113.1| PREDICTED: LOW QUALITY PROTEIN: probable small nuclear
ribonucleoprotein Sm D2-like [Saimiri boliviensis
boliviensis]
Length = 221
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FN+GPLSVL SVKN QVLI+C NNKKLLG V AFD HCN VLENV+EM TE+
Sbjct: 24 FNSGPLSVLTQSVKNTPQVLISCSNNKKLLGGVXAFDGHCNAVLENVKEMGTEV-PKSGK 82
Query: 78 KKKALPVNKDRFISKMFLRGD 98
KK+ PVNK R+I MFL D
Sbjct: 83 GKKSKPVNKARYIPGMFLLRD 103
>gi|164657289|ref|XP_001729771.1| hypothetical protein MGL_3315 [Malassezia globosa CBS 7966]
gi|159103664|gb|EDP42557.1| hypothetical protein MGL_3315 [Malassezia globosa CBS 7966]
Length = 104
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 51/59 (86%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 72
E+ E + GPLSVL SV+N++QVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE+P
Sbjct: 21 EQYEISQGPLSVLQQSVRNHSQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEVP 79
>gi|444720876|gb|ELW61643.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 144
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 62/83 (74%)
Query: 25 VLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPV 84
+L S KNNTQ LINC +KK+LG V FDRH MVLENV+ M TE PK GK KKK+ PV
Sbjct: 1 MLTQSAKNNTQELINCFYDKKILGCVETFDRHYTMVLENVKRMRTEFPKNGKDKKKSKPV 60
Query: 85 NKDRFISKMFLRGDSVIIVLRNP 107
NKDR+ISKMFL + I+VL+NP
Sbjct: 61 NKDRYISKMFLHRNVGIVVLQNP 83
>gi|224137176|ref|XP_002327056.1| predicted protein [Populus trichocarpa]
gi|222835371|gb|EEE73806.1| predicted protein [Populus trichocarpa]
Length = 127
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 75/118 (63%), Gaps = 16/118 (13%)
Query: 3 SRPMEEDNV----KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCN 58
SR +E+D + EEE+F TGPLS LM+S+K NTQVLIN NNKKLL A H
Sbjct: 2 SRAIEKDATGREEEEEEEDFGTGPLSFLMISIKRNTQVLINLCNNKKLL----AHSHHMV 57
Query: 59 MVLENVR-------EMWTEL-PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
+ L R + L KTGKG++KA +N++RFISK+FLRGDSVI++L N +
Sbjct: 58 VWLAAGRLYPSCRFHAYALLVEKTGKGEEKARTINRERFISKIFLRGDSVIVILMNQR 115
>gi|444721316|gb|ELW62058.1| putative small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 165
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 55/69 (79%), Gaps = 2/69 (2%)
Query: 31 KNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFI 90
KN+TQVL++CRN +KLLGR +A DR CNMV +NV+E+W E+P++GKGKK PV+KD +
Sbjct: 70 KNSTQVLLDCRN-QKLLGRAKALDRRCNMVPDNVKELWAEVPQSGKGKKSK-PVHKDCHV 127
Query: 91 SKMFLRGDS 99
S+M L G S
Sbjct: 128 SRMLLPGLS 136
>gi|14596019|gb|AAK68737.1| small nuclear ribonucleoprotein-like protein [Arabidopsis
thaliana]
Length = 135
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/51 (86%), Positives = 46/51 (90%), Gaps = 2/51 (3%)
Query: 3 SRPMEEDN--VKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVR 51
S+PMEED K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVR
Sbjct: 2 SKPMEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVR 52
>gi|330038624|ref|XP_003239651.1| small nuclear ribonucleoprotein SM D2 [Cryptomonas paramecium]
gi|327206575|gb|AEA38753.1| small nuclear ribonucleoprotein SM D2 [Cryptomonas paramecium]
Length = 85
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 58/87 (66%), Gaps = 7/87 (8%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
+N P +L+ +V +N V+I RNN+KL+G +RAFD+H N++LENVRE+WT +
Sbjct: 4 YNKSPFFLLVQAVISNRPVIIFVRNNRKLVGYIRAFDKHVNLILENVRELWTTCVEKN-- 61
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVL 104
+R+I+KM LRGDS++++L
Sbjct: 62 -----IFYHERYIAKMILRGDSIVLLL 83
>gi|313233805|emb|CBY09974.1| unnamed protein product [Oikopleura dioica]
Length = 53
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/49 (79%), Positives = 42/49 (85%), Gaps = 1/49 (2%)
Query: 59 MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
MVLENV+EMW E PKT KGK PVN+DRFISKMFLRGDSVIIVL+NP
Sbjct: 1 MVLENVKEMWVERPKTSKGKG-GQPVNRDRFISKMFLRGDSVIIVLKNP 48
>gi|123414193|ref|XP_001304446.1| Sm protein [Trichomonas vaginalis G3]
gi|121885898|gb|EAX91516.1| Sm protein [Trichomonas vaginalis G3]
Length = 111
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 68/109 (62%), Gaps = 5/109 (4%)
Query: 1 MSSRPMEEDNVKNEE-EEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM 59
M+ P ED+++ E TGP++ ++ +V + +LI R+N+KL G ++A DRH NM
Sbjct: 1 MTEDPQPEDSMEPSEMTNLQTGPMAPIVKAVYDKEPLLIALRSNRKLYGYIKAVDRHWNM 60
Query: 60 VLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
+LE+V E+ T P G+ A P+ R I+++FLRGD+VI + NPK
Sbjct: 61 ILEHVIEI-TPTP-AKPGQPAAAPIQ--RRINRLFLRGDNVICIYPNPK 105
>gi|161899517|ref|XP_001712984.1| mRNA splicing factor [Bigelowiella natans]
gi|75756479|gb|ABA27372.1| mRNA splicing factor [Bigelowiella natans]
Length = 101
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 19 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGK 78
N GP +L K N++++I+ +N K G +R FD+HCN++LE+V E+W E +
Sbjct: 14 NKGPFMLLSKVTKLNSKIIISSNDNHKFYGFIRGFDKHCNLMLEDVTEIWKEETTDARSL 73
Query: 79 KKALPVNKDRFISKMFLRGDSVIIV 103
KK + + K++FI K+F RGD+VI++
Sbjct: 74 KKKVVI-KEKFIPKLFFRGDAVILI 97
>gi|449017972|dbj|BAM81374.1| similar to Sm protein D2 [Cyanidioschyzon merolae strain 10D]
Length = 332
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 56/84 (66%), Gaps = 6/84 (7%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
P ++L + + L++CR+NKKL G +RA+D+H N+++E+VRE+W E +
Sbjct: 242 PFTLLDRCITDRVPCLVSCRHNKKLYGTLRAYDKHFNLIMEHVREIWQE------SQPDR 295
Query: 82 LPVNKDRFISKMFLRGDSVIIVLR 105
P ++RFIS++F+RGD VI ++R
Sbjct: 296 PPDLRERFISRLFVRGDGVIFIVR 319
>gi|429327958|gb|AFZ79718.1| hypothetical protein BEWA_025670 [Babesia equi]
Length = 921
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/120 (37%), Positives = 69/120 (57%), Gaps = 20/120 (16%)
Query: 6 MEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLIN------------CRNNKKLLGR---- 49
+EE + K E + + ++ + ++T ++++ C KL R
Sbjct: 803 LEETSNKTAEAQVQSASVTSSQIPSDDSTNIIVSVTTGILGTSALACFAGWKLYNRYKGD 862
Query: 50 --VRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
V+AFDRHCNM+L + RE+WTE K G GKK+ + KDR +S++FLRGDSVI+VL+NP
Sbjct: 863 PWVKAFDRHCNMILTDARELWTETVKVG-GKKQRSSI-KDRHLSRVFLRGDSVIVVLKNP 920
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 1 MSSRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
MSSR E ++ E ++ GPLS+L V+ N++VL++ RNN+K+LGR ++ N++
Sbjct: 1 MSSRVKEAPQMEVENKDSPAGPLSILEECVRENSKVLVDLRNNRKILGRETRLEK--NVI 58
Query: 61 LE 62
LE
Sbjct: 59 LE 60
>gi|67522691|ref|XP_659406.1| hypothetical protein AN1802.2 [Aspergillus nidulans FGSC A4]
gi|40745811|gb|EAA64967.1| hypothetical protein AN1802.2 [Aspergillus nidulans FGSC A4]
Length = 73
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 46/63 (73%), Gaps = 4/63 (6%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N Q L+ ++ L RV+AFDRH NMVLENV+EMWTE K GKG+ PVNKDRFISK
Sbjct: 5 NIQTLLQKPRSECTLARVKAFDRHSNMVLENVKEMWTEPQKGGKGR----PVNKDRFISK 60
Query: 93 MFL 95
M+L
Sbjct: 61 MYL 63
>gi|302408451|ref|XP_003002060.1| small nuclear ribonucleoprotein Sm D2 [Verticillium albo-atrum
VaMs.102]
gi|261358981|gb|EEY21409.1| small nuclear ribonucleoprotein Sm D2 [Verticillium albo-atrum
VaMs.102]
Length = 96
Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 50/71 (70%), Gaps = 2/71 (2%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
E + + EE EF+ GPLS+L +V+++TQVLI+ RNN+KLL RV+AFDRHCNM + +
Sbjct: 19 EYEIAQLEEHEFSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMCVPPLHR 78
Query: 67 MWTEL--PKTG 75
+ E P+ G
Sbjct: 79 VSPEASSPRPG 89
>gi|399949825|gb|AFP65482.1| small nuclear ribonucleoprotein SM D2 [Chroomonas mesostigmatica
CCMP1168]
Length = 85
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
Query: 19 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGK 78
N PL + N V+I RNNKKLLG +RAFDRH N++++N +E+WT K K K
Sbjct: 4 NESPLDFFSEIIIGNRPVMIFIRNNKKLLGYIRAFDRHMNLIIDNGKEIWTS--KCSKKK 61
Query: 79 KKALPVNKDRFISKMFLRGDSVIIVLR 105
K ++F K+ LRGDS+I+++R
Sbjct: 62 VKF----HEKFFPKLVLRGDSIILIVR 84
>gi|443924031|gb|ELU43110.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 125
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 39/47 (82%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
EE E + GPLSVL SV+N+TQVLI+ RNNKKLL RV+AFDRH NMV
Sbjct: 68 EEHEISQGPLSVLQQSVRNHTQVLISLRNNKKLLARVKAFDRHSNMV 114
>gi|194745332|ref|XP_001955142.1| GF18622 [Drosophila ananassae]
gi|190628179|gb|EDV43703.1| GF18622 [Drosophila ananassae]
Length = 56
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/49 (89%), Positives = 47/49 (95%)
Query: 59 MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
MVLENV+EMWTELP+TGKGKKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 1 MVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 49
>gi|242087889|ref|XP_002439777.1| hypothetical protein SORBIDRAFT_09g019920 [Sorghum bicolor]
gi|241945062|gb|EES18207.1| hypothetical protein SORBIDRAFT_09g019920 [Sorghum bicolor]
Length = 105
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 37/39 (94%)
Query: 70 ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
++PKTGKGKK ALPVNKDRFISK+FLRG+ VIIVLR+PK
Sbjct: 67 QVPKTGKGKKAALPVNKDRFISKIFLRGNRVIIVLRDPK 105
>gi|402077069|gb|EJT72418.1| hypothetical protein GGTG_09284, partial [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 142
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 38/48 (79%)
Query: 16 EEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 63
EF+ GPLS+L +V + QVLI+ RNN+KLL RV+AFD HCNMVLEN
Sbjct: 95 HEFSAGPLSILQSAVCSRAQVLISIRNNRKLLARVKAFDYHCNMVLEN 142
>gi|154344332|ref|XP_001568110.1| small nuclear ribonucleoprotein SmD2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065444|emb|CAM40878.1| small nuclear ribonucleoprotein SmD2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 103
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 55/87 (63%), Gaps = 10/87 (11%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 80
GP S+L S+K N +V I CRN+K LL V AFD+H N+VL+ V+E+ TE G ++
Sbjct: 27 GPFSLLDTSMKENKRVFIQCRNSKALLAHVIAFDKHFNLVLKGVQEI-TE----SHGSEQ 81
Query: 81 ALPVNKDRFISKMFLRGDSVIIVLRNP 107
K R I +FLRG+SV+ +++ P
Sbjct: 82 -----KQRTIENLFLRGESVVFIVKLP 103
>gi|19074769|ref|NP_586275.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 [Encephalitozoon cuniculi GB-M1]
gi|19069411|emb|CAD25879.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 [Encephalitozoon cuniculi GB-M1]
Length = 135
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
Query: 13 NEEEEFN-TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 71
NE+E GPLS++ ++ VL++ R+N+K+LGRV A+DRH N+++E+ +E+ T
Sbjct: 11 NEKETMEMKGPLSLVRRAMVKMKPVLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTR 70
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
K KG+KK R + K+F+RGD+VI+V
Sbjct: 71 GKN-KGRKKRQGCEFSRKLGKVFIRGDTVILV 101
>gi|449329925|gb|AGE96193.1| small nuclear ribonucleoprotein d2 [Encephalitozoon cuniculi]
Length = 135
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
Query: 13 NEEEEFN-TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 71
NE+E GPLS++ ++ VL++ R+N+K+LGRV A+DRH N+++E+ +E+ T
Sbjct: 11 NEKETMEMKGPLSLVRRAMVKMKPVLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTR 70
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
K KG+KK R + K+F+RGD+VI+V
Sbjct: 71 GKN-KGRKKRQGCEFSRKLGKVFIRGDTVILV 101
>gi|146098272|ref|XP_001468379.1| small nuclear ribonucleoprotein SmD2 [Leishmania infantum JPCM5]
gi|157875373|ref|XP_001686081.1| small nuclear ribonucleoprotein SmD2 [Leishmania major strain
Friedlin]
gi|398021989|ref|XP_003864157.1| small nuclear ribonucleoprotein SmD2 [Leishmania donovani]
gi|401428184|ref|XP_003878575.1| small nuclear ribonucleoprotein SmD2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|68129154|emb|CAJ06890.1| small nuclear ribonucleoprotein SmD2 [Leishmania major strain
Friedlin]
gi|134072746|emb|CAM71463.1| small nuclear ribonucleoprotein SmD2 [Leishmania infantum JPCM5]
gi|322494823|emb|CBZ30127.1| small nuclear ribonucleoprotein SmD2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322502391|emb|CBZ37475.1| small nuclear ribonucleoprotein SmD2 [Leishmania donovani]
Length = 103
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 54/87 (62%), Gaps = 10/87 (11%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 80
GP S+L ++K +V I CRN+K LL V AFD+H N+VL+ V+E+ TE G ++
Sbjct: 27 GPFSLLDTAMKEKKRVFIQCRNSKALLAHVIAFDKHFNLVLKGVQEI-TE----SHGSEQ 81
Query: 81 ALPVNKDRFISKMFLRGDSVIIVLRNP 107
K R I +FLRG+SVI +++ P
Sbjct: 82 -----KQRTIENLFLRGESVIFIVKLP 103
>gi|401827885|ref|XP_003888235.1| Sm-like ribonucleoprotein subunit D2 [Encephalitozoon hellem ATCC
50504]
gi|392999435|gb|AFM99254.1| Sm-like ribonucleoprotein subunit D2 [Encephalitozoon hellem ATCC
50504]
Length = 128
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 60/92 (65%), Gaps = 2/92 (2%)
Query: 13 NEEEEFNT-GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 71
NE+E GPLS++ ++ VL++ RNN+K++G+V A+DRH N+++E+ +E+ T
Sbjct: 11 NEKEAMEMKGPLSLVHRAMVKMMPVLVSLRNNRKVVGKVIAYDRHYNLLMEDAKELGTMR 70
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
K +GKKK R + +F+RGD+VI+V
Sbjct: 71 GKN-RGKKKRQGCGFSRRLGNVFIRGDTVILV 101
>gi|449292825|gb|EMC90804.1| Small nuclear ribonucleoprotein Sm D2 [Columba livia]
Length = 54
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/49 (85%), Positives = 48/49 (97%)
Query: 59 MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
MVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 1 MVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 49
>gi|396082353|gb|AFN83963.1| small nuclear ribonucleoprotein D2 [Encephalitozoon romaleae
SJ-2008]
Length = 128
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 60/92 (65%), Gaps = 2/92 (2%)
Query: 13 NEEEEFNT-GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 71
NE+EE GPLS++ ++ VL++ RNN+K++G+V A+DRH N+++ + +E+ +
Sbjct: 11 NEKEEMEMKGPLSLVHRAMVKAMPVLVSLRNNRKVMGKVIAYDRHYNLLMGDAKEIGN-M 69
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
KGKKK + R + +F+RGD+VI+V
Sbjct: 70 RGRNKGKKKRQGCDFSRRLGNVFIRGDTVILV 101
>gi|303391220|ref|XP_003073840.1| small nuclear ribonucleoprotein D2 [Encephalitozoon intestinalis
ATCC 50506]
gi|303302988|gb|ADM12480.1| small nuclear ribonucleoprotein D2 [Encephalitozoon intestinalis
ATCC 50506]
Length = 136
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 5 PMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64
P DN +E GPLS++ ++ VLI+ RNN+K+ G+V A+DRH N+++
Sbjct: 4 PNNPDNPGEKESMEMKGPLSLVRRAMVKMIPVLISLRNNRKVTGKVVAYDRHYNLLVREA 63
Query: 65 REMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
RE T + KG+KK R + +F+RGD+VI+V
Sbjct: 64 REFGTARGRN-KGRKKRQGSEFSRKLGNVFIRGDTVILV 101
>gi|71417383|ref|XP_810555.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma cruzi strain CL
Brener]
gi|70875103|gb|EAN88704.1| small nuclear ribonucleoprotein SmD2, putative [Trypanosoma cruzi]
Length = 111
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 11/87 (12%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 80
GP SVL +++N T+V I R NK L+ V AFD+H N+VL +V EL K +
Sbjct: 32 GPFSVLDSAMRNGTRVFIQSRFNKSLVATVVAFDKHFNLVLRDV----VELAMVNKQQ-- 85
Query: 81 ALPVNKDRFISKMFLRGDSVIIVLRNP 107
K+R I MFLRG SV+ +++ P
Sbjct: 86 -----KERSIRNMFLRGGSVVFIVKLP 107
>gi|71406106|ref|XP_805619.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma cruzi strain CL
Brener]
gi|70869094|gb|EAN83768.1| small nuclear ribonucleoprotein SmD2, putative [Trypanosoma cruzi]
Length = 111
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 11/87 (12%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 80
GP SVL +++N T+V I R NK L+ V AFD+H N+VL +V EL K +
Sbjct: 32 GPFSVLDSAMRNGTRVFIQSRFNKSLVATVVAFDKHFNLVLRDV----VELAMVNKEQ-- 85
Query: 81 ALPVNKDRFISKMFLRGDSVIIVLRNP 107
K+R I MFLRG SV+ +++ P
Sbjct: 86 -----KERSIRNMFLRGGSVVFIVKLP 107
>gi|165934067|gb|ABY74561.1| small nuclear ribonucleoprotein D2 (predicted) [Callithrix jacchus]
Length = 53
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 45/49 (91%), Gaps = 1/49 (2%)
Query: 59 MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
MVLENV+EMWTE+PK+GK KK+ PV+KDR+ISKMF RGDSVI+VLRNP
Sbjct: 1 MVLENVKEMWTEVPKSGK-GKKSKPVSKDRYISKMFRRGDSVIVVLRNP 48
>gi|9837176|gb|AAG00462.1|AF280394_1 Sm-D2 [Trypanosoma brucei]
gi|261326673|emb|CBH09635.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma brucei gambiense
DAL972]
Length = 111
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 17/91 (18%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 80
GP +L +VKN T+V I R NK L+ V AFD+H N+VL + E+
Sbjct: 32 GPFCLLDSAVKNGTRVFIQSRYNKSLVATVVAFDKHFNLVLRDAVELTM----------- 80
Query: 81 ALPVN---KDRFISKMFLRGDSVIIVLRNPK 108
VN K+R I MFLRG SV+ ++R P+
Sbjct: 81 ---VNNEQKERSIRNMFLRGASVVFIVRLPQ 108
>gi|84043878|ref|XP_951729.1| small nuclear ribonucleoprotein [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|33348718|gb|AAQ16042.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|62358544|gb|AAX79005.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma brucei]
Length = 111
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 17/91 (18%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 80
GP +L +VKN T+V I R NK L+ V AFD+H N+VL + E+
Sbjct: 32 GPFCLLDSAVKNGTRVFIQSRYNKSLVATVVAFDKHFNLVLRDAVELTM----------- 80
Query: 81 ALPVN---KDRFISKMFLRGDSVIIVLRNPK 108
VN K+R I MFLRG SV+ ++R P+
Sbjct: 81 ---VNNEQKERSIRNMFLRGASVVFIVRLPQ 108
>gi|342180098|emb|CCC89574.1| putative small nuclear ribonucleoprotein SmD2 [Trypanosoma
congolense IL3000]
Length = 111
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 17/91 (18%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 80
GP +L +VKN T+V I R NK L+ V AFD+H N+VL + E+
Sbjct: 32 GPFCLLDSAVKNGTRVFIQSRYNKSLVATVVAFDKHFNLVLRDAVEL------------- 78
Query: 81 ALPVN---KDRFISKMFLRGDSVIIVLRNPK 108
+ +N K+R I MFLRG SV+ +++ P+
Sbjct: 79 -MMINDEQKERSIRNMFLRGASVVFIVKLPQ 108
>gi|162606564|ref|XP_001713312.1| small nuclear ribonucleoprotein SM D2 [Guillardia theta]
gi|12580778|emb|CAC27096.1| small nuclear ribonucleoprotein SM D2 [Guillardia theta]
Length = 82
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 17/89 (19%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM------WTELPKTG 75
P + V+N+ V+I RNNK+++G++ +D+H N++LENV E+ ++EL K
Sbjct: 3 PFDYISGCVRNDKSVMIILRNNKRMIGKIINYDKHLNLLLENVNEIKFVGENFSELIKI- 61
Query: 76 KGKKKALPVNKDRFISKMFLRGDSVIIVL 104
K +FI K+FLRGD+++++L
Sbjct: 62 ----------KSKFIPKVFLRGDNIVLIL 80
>gi|313218736|emb|CBY43160.1| unnamed protein product [Oikopleura dioica]
Length = 58
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVR 51
F TGPLSVL SV+NNTQVLINCRNN+KL+GRV+
Sbjct: 25 FQTGPLSVLTESVRNNTQVLINCRNNRKLMGRVK 58
>gi|340054745|emb|CCC49047.1| putative small nuclear ribonucleoprotein SmD2 [Trypanosoma vivax
Y486]
Length = 111
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 80
GP S+L +V++ T+V I R NK L+ V AFD+H N+VL + E+ + K +
Sbjct: 32 GPFSLLESAVRDGTRVFIQSRFNKSLVATVVAFDKHFNLVLRDAVELT--MVKNEQ---- 85
Query: 81 ALPVNKDRFISKMFLRGDSVIIVLRNPK 108
++R I MFLRG SV+ V++ P+
Sbjct: 86 -----RERSIRNMFLRGSSVVFVVKLPQ 108
>gi|84995764|ref|XP_952604.1| u6 snrna-associated sm-like protein Lsm3 [Theileria annulata strain
Ankara]
gi|65302765|emb|CAI74872.1| u6 snrna-associated sm-like protein Lsm3, putative [Theileria
annulata]
Length = 94
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
+ + C+N ++L+GR+ AFD HCNMVL +V E T + K + V K R +F+
Sbjct: 22 IYLKCKNGRELVGRLHAFDEHCNMVLSDVTETITTVDADDNSKNETTKVTK-RDNGTIFV 80
Query: 96 RGDSVIIV 103
RGDS++++
Sbjct: 81 RGDSLVLL 88
>gi|303314445|ref|XP_003067231.1| conserved hypothetical protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240106899|gb|EER25086.1| conserved hypothetical protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 44
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 36/46 (78%), Gaps = 4/46 (8%)
Query: 59 MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
MVLENV+EMWTE PK K VNKDRF+SKMFLRGDSVI+VL
Sbjct: 1 MVLENVKEMWTEKPKG----GKGKGVNKDRFVSKMFLRGDSVILVL 42
>gi|341881025|gb|EGT36960.1| hypothetical protein CAEBREN_23318 [Caenorhabditis brenneri]
Length = 102
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L +S+ + +V + RN+++L GR+RAFD+H NMVL +V E T + + +
Sbjct: 17 PLDLLRLSL--DEKVYVKMRNDRELRGRLRAFDQHLNMVLSDVEETIT-TREVDEDTFEE 73
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ R + +F+RGDSVI+V
Sbjct: 74 IYRQSKRVVPMLFVRGDSVILV 95
>gi|268552449|ref|XP_002634207.1| C. briggsae CBR-LSM-3 protein [Caenorhabditis briggsae]
Length = 102
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L +S+ + +V + RN+++L GR+RAFD+H NMVL V E T + + +
Sbjct: 17 PLDLLRLSL--DEKVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETIT-TREVDEDTFEE 73
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ R + +F+RGDSVI+V
Sbjct: 74 IYRQSKRVVPMLFVRGDSVILV 95
>gi|17543872|ref|NP_502579.1| Protein LSM-3 [Caenorhabditis elegans]
gi|14530659|emb|CAB60606.2| Protein LSM-3 [Caenorhabditis elegans]
Length = 102
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L +S+ + +V + RN+++L GR+RAFD+H NMVL V E T + + +
Sbjct: 17 PLDLLRLSL--DERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETIT-TREVDEDTFEE 73
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ R + +F+RGDSVI+V
Sbjct: 74 IYKQTKRVVPMLFVRGDSVILV 95
>gi|401399263|ref|XP_003880515.1| deha2e04510p, related [Neospora caninum Liverpool]
gi|325114925|emb|CBZ50482.1| deha2e04510p, related [Neospora caninum Liverpool]
Length = 96
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 9/85 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL---PKTGKGK 78
PL ++ +S+ + +V I CR +++++G++ A+D H NMVL +V E+ T + P TG +
Sbjct: 10 PLDIVRVSLDD--RVTIKCRGDREVMGKLHAYDMHLNMVLGDVEEVATTVTTDPLTGDEQ 67
Query: 79 KKALPVNKDRFISKMFLRGDSVIIV 103
K R + +FLRGD++I+V
Sbjct: 68 TK----KTTRRLPLIFLRGDAIILV 88
>gi|66362586|ref|XP_628259.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|46229856|gb|EAK90674.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
Length = 95
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + QV + CR N++L G + A+D H NMVL NV E + E +
Sbjct: 7 PLDLIRLSL--DEQVFVKCRGNRELKGTLYAYDPHMNMVLGNVEETYYEEESKSDTQNSE 64
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K R I +FLRGD +I+V
Sbjct: 65 KKLKKRR-IEMLFLRGDLIILV 85
>gi|67484430|ref|XP_657435.1| U6 snRNA-associated Sm-like protein LSm3 [Entamoeba histolytica
HM-1:IMSS]
gi|56474688|gb|EAL52049.1| U6 snRNA-associated Sm-like protein LSm3, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449702203|gb|EMD42886.1| U6 snrnaassociated Sm family LSm3 protein [Entamoeba histolytica
KU27]
Length = 78
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 17/82 (20%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
P+ ++ +S+ +N V I R +KL G++RAFD+H N++L NV EM+ E K +
Sbjct: 9 PIDLIKLSLDDN--VFIKLRGGRKLKGKLRAFDQHLNIILTNVSEMYQE-------KTRT 59
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
PV +++RGD VI++
Sbjct: 60 FPV--------LYIRGDLVILI 73
>gi|442746065|gb|JAA65192.1| Putative small nuclear ribonucleoprotein d2 polypeptide, partial
[Ixodes ricinus]
Length = 131
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 18 FNTGP-LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFD---RHCNMVLENVREMWTELP- 72
FNTGP L + K NT K L V D +CNM +ENV+EMWTE
Sbjct: 13 FNTGPPLRADAVRTKTNTLSSHTTAGTNKKLAWVGVKDIRTVYCNMFVENVKEMWTETSN 72
Query: 73 KTGKGKKKALPV-NKDR--FISKMFLRGDSVIIVLRNP 107
+ + +++ PV KDR +MFLRGDSVI+VL P
Sbjct: 73 ERERYREETNPVRTKDRPTIYQRMFLRGDSVILVLNEP 110
>gi|237844935|ref|XP_002371765.1| LSM domain-containing protein [Toxoplasma gondii ME49]
gi|211969429|gb|EEB04625.1| LSM domain-containing protein [Toxoplasma gondii ME49]
gi|221480823|gb|EEE19247.1| LSM domain-containing protein, putative [Toxoplasma gondii GT1]
gi|221501570|gb|EEE27343.1| LSM domain-containing protein, putative [Toxoplasma gondii VEG]
Length = 96
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 9/85 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL---PKTGKGK 78
PL ++ +S+ + +V I CR +++++G++ A+D H NMVL +V E+ T + P TG +
Sbjct: 10 PLDIVRVSL--DERVTIKCRGDREVVGKLHAYDMHLNMVLGDVEEVATTVTSDPLTGDEQ 67
Query: 79 KKALPVNKDRFISKMFLRGDSVIIV 103
K R + +FLRGD++I+V
Sbjct: 68 TK----KTTRRLPLIFLRGDAIILV 88
>gi|156400726|ref|XP_001638943.1| predicted protein [Nematostella vectensis]
gi|156226068|gb|EDO46880.1| predicted protein [Nematostella vectensis]
Length = 102
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 16 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILSDVEETITTVEIDEETFEEL 73
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
NK R + MF+RGD VI+V
Sbjct: 74 FRTNK-RTVPMMFIRGDGVILV 94
>gi|50546547|ref|XP_500743.1| YALI0B11022p [Yarrowia lipolytica]
gi|49646609|emb|CAG82989.1| YALI0B11022p [Yarrowia lipolytica CLIB122]
Length = 94
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 15/90 (16%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL----PKTGKG 77
PL ++ +S+ N V + R ++L G + A+D HC+MVL NV E E PK
Sbjct: 12 PLDLIGLSLNEN--VFVKLRGGRELYGLLHAYDIHCSMVLGNVEETVFEYVEGSPKLEAR 69
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ +F+RGDSVI+V NP
Sbjct: 70 KKKS---------EMLFVRGDSVILVTSNP 90
>gi|308492161|ref|XP_003108271.1| CRE-LSM-3 protein [Caenorhabditis remanei]
gi|308249119|gb|EFO93071.1| CRE-LSM-3 protein [Caenorhabditis remanei]
Length = 102
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
P+ +L +S+ + +V + RN++++ GR+RAFD+H NMVL V E T + + +
Sbjct: 17 PIDLLRLSL--DERVYVKMRNDREIRGRLRAFDQHLNMVLSEVEETIT-TREVDEDTFEE 73
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ R + +F+RGDSVI+V
Sbjct: 74 IYRQTKRVVPMLFVRGDSVILV 95
>gi|301760133|ref|XP_002915871.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Ailuropoda
melanoleuca]
Length = 182
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 11/99 (11%)
Query: 8 EDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
E+ K E+ E N GPLSVL +S ++NT +LI+ RN++K V+A D H +
Sbjct: 89 EEPEKWEDRESNMGPLSVLTVS-QDNTLMLIHGRNSEKPPAHVKASDGHSTWCWRS---- 143
Query: 68 WTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
WTE P+ + V+K +S++FL D V++V +N
Sbjct: 144 WTESPRAARA------VSKVCHLSRLFLCRDLVVLVPQN 176
>gi|407038130|gb|EKE38950.1| LSM domain containing protein [Entamoeba nuttalli P19]
Length = 78
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 17/82 (20%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
P+ ++ +S+ +N V I R +KL G++RAFD+H N++L NV E++ E K +
Sbjct: 9 PIDLIKLSLDDN--VFIKLRGGRKLKGKLRAFDQHLNIILTNVSEIYQE-------KTRT 59
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
PV +++RGD VI++
Sbjct: 60 FPV--------LYIRGDLVILI 73
>gi|399216324|emb|CCF73012.1| unnamed protein product [Babesia microti strain RI]
Length = 93
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 11/90 (12%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE---MWTELPKTGKGK 78
PL ++ +++ + V I + N+++ G++ A+D HCN++LE+ E + TE P+TG
Sbjct: 10 PLDLIRLTL--DEYVYIKSKGNREITGKLHAYDEHCNIILEDAVETITVITEDPETGTES 67
Query: 79 KKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
N D +F+RGDS+I+V +PK
Sbjct: 68 TSVNTKNSDV----LFVRGDSIILV--SPK 91
>gi|281352778|gb|EFB28362.1| hypothetical protein PANDA_003898 [Ailuropoda melanoleuca]
Length = 107
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 11/99 (11%)
Query: 8 EDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
E+ K E+ E N GPLSVL +S ++NT +LI+ RN++K V+A D H +
Sbjct: 14 EEPEKWEDRESNMGPLSVLTVS-QDNTLMLIHGRNSEKPPAHVKASDGHSTWCWRS---- 68
Query: 68 WTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
WTE P+ + V+K +S++FL D V++V +N
Sbjct: 69 WTESPRAARA------VSKVCHLSRLFLCRDLVVLVPQN 101
>gi|294886769|ref|XP_002771844.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239875644|gb|EER03660.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|302372346|gb|ADL28384.1| putative Sm-like RNA-binding protein [Perkinsus marinus ATCC 50439]
Length = 92
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
P ++ +S+ QV CR ++ L GR+ A+D H NMVL V E+ P +G K
Sbjct: 10 PFELVKLSLDERIQV--KCRGDRYLRGRLVAYDSHLNMVLSEVEEVIE--PPVKEGVKHR 65
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
P+ +D + +F+RGD +I+V
Sbjct: 66 RPIRRD--LDTIFVRGDGIILV 85
>gi|196003100|ref|XP_002111417.1| hypothetical protein TRIADDRAFT_23866 [Trichoplax adhaerens]
gi|190585316|gb|EDV25384.1| hypothetical protein TRIADDRAFT_23866 [Trichoplax adhaerens]
Length = 104
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
Query: 11 VKNEEEEFNT--GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 68
V EE NT PL ++ +S+ + ++L+ RN+++L GR+ A+D+H NMVL +V E
Sbjct: 4 VATNEETSNTVEEPLDLVRLSL--DERILVKMRNDRELRGRLHAYDQHLNMVLGDVEETI 61
Query: 69 TELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
T + + ++ +K R I +++RGD VI+V
Sbjct: 62 TTVEIDDETFEELYKTSK-RQIPMLYVRGDGVILV 95
>gi|384252623|gb|EIE26099.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 95
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE+ PL ++ +S+ + ++ + R +++L GR+ A+D+H NM+L V E T +
Sbjct: 3 EEDATVKEPLDLIRLSL--DERIYVKLRGDRELRGRLHAYDQHLNMILGEVEETITSIEI 60
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ + NK R + +F+RGD VI+V
Sbjct: 61 DDETYEEIIKTNK-RAVPFLFVRGDGVILV 89
>gi|15223768|ref|NP_177812.1| U6 snRNA-associated Sm-like protein LSm3 [Arabidopsis thaliana]
gi|12322228|gb|AAG51149.1|AC079283_6 Sm-like protein [Arabidopsis thaliana]
gi|21592388|gb|AAM64339.1| Sm-like protein [Arabidopsis thaliana]
gi|98961019|gb|ABF58993.1| At1g76860 [Arabidopsis thaliana]
gi|332197775|gb|AEE35896.1| U6 snRNA-associated Sm-like protein LSm3 [Arabidopsis thaliana]
Length = 98
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 72
EEE PL ++ +S+ + ++ + R++++L G++ AFD+H NM+L +V E T +
Sbjct: 3 GEEEATVREPLDLIRLSL--DERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60
Query: 73 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ + K R I +F+RGD VI+V
Sbjct: 61 IDDETYEEIVRTTK-RTIEFLFVRGDGVILV 90
>gi|224011054|ref|XP_002294484.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969979|gb|EED88318.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 90
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 53/83 (63%), Gaps = 5/83 (6%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + +V + CRN+++L G++ AFD+H NMVL +V E T + + ++
Sbjct: 5 PLDLIKLSI--DERVYVKCRNDRELRGKLHAFDQHLNMVLSDVEETITSTEEDDETGEEI 62
Query: 82 LPVNK-DRFISKMFLRGDSVIIV 103
VNK R + +F+RGD V++V
Sbjct: 63 --VNKRTRSVGMLFVRGDIVVLV 83
>gi|148908265|gb|ABR17247.1| unknown [Picea sitchensis]
Length = 97
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 72
EE+ PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T +
Sbjct: 3 TEEDSAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITTVE 60
Query: 73 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ + +K R + +F+RGD VI+V
Sbjct: 61 IDDETYEEIVKTSK-RVVPYLFVRGDGVILV 90
>gi|326498435|dbj|BAJ98645.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326513560|dbj|BAJ87799.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 101
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 72
+EE+ PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T +
Sbjct: 7 SEEDVAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTSIE 64
Query: 73 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ + +K R I +F+RGD VI+V
Sbjct: 65 IDDETYEEIVRTSK-RTIPYLFVRGDGVILV 94
>gi|289742031|gb|ADD19763.1| small nuclear ribonucleoprotein LsM3 [Glossina morsitans morsitans]
Length = 102
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + +V + RN ++L GR+ AFD+H NMVL + E T + + ++
Sbjct: 17 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 74
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 75 YKTTK-RTIPMLFVRGDGVILV 95
>gi|72008835|ref|XP_786272.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Strongylocentrotus purpuratus]
Length = 105
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 18 PLDLIRLSL--DERIYVKMRNDRELKGRLHAYDQHLNMILGDVEETVTAVEIDEETYEEI 75
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 76 YKSTK-RSIQMLFVRGDGVILV 96
>gi|390178194|ref|XP_002137483.2| GA30187 [Drosophila pseudoobscura pseudoobscura]
gi|388859360|gb|EDY68041.2| GA30187 [Drosophila pseudoobscura pseudoobscura]
Length = 100
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + +V + RN ++L GR+ AFD+H NMVL + E T + + ++
Sbjct: 15 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 72
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 73 YKTTK-RTIPMLFVRGDGVILV 93
>gi|403221689|dbj|BAM39821.1| U6 snRNA-associated sm-like protein Lsm3 [Theileria orientalis
strain Shintoku]
Length = 93
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 9/85 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL---PKTGKGK 78
PL ++ +++ + + + C+N ++L+GR+ AFD HCNMVL V E T + P T +
Sbjct: 10 PLDMIRLNL--DEMIYLKCKNGRELIGRLHAFDDHCNMVLSEVTETITTVDGEPNTNQQP 67
Query: 79 KKALPVNKDRFISKMFLRGDSVIIV 103
K R +F+RGDS+I++
Sbjct: 68 NKV----TRRDSRTVFVRGDSLILL 88
>gi|195144968|ref|XP_002013468.1| GL23390 [Drosophila persimilis]
gi|198477437|ref|XP_002136616.1| GA29226 [Drosophila pseudoobscura pseudoobscura]
gi|194102411|gb|EDW24454.1| GL23390 [Drosophila persimilis]
gi|198142908|gb|EDY71620.1| GA29226 [Drosophila pseudoobscura pseudoobscura]
Length = 103
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + +V + RN ++L GR+ AFD+H NMVL + E T + + ++
Sbjct: 18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 75
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 76 YKTTK-RTIPMLFVRGDGVILV 96
>gi|348682103|gb|EGZ21919.1| hypothetical protein PHYSODRAFT_285678 [Phytophthora sojae]
Length = 92
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 9/85 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT--EL-PKTGKGK 78
PL ++ +SV ++ + CR +++L G ++A+D+H NMVL +V E T EL P+T +
Sbjct: 7 PLDLIKLSVAE--RIYVKCRGDRELRGVLQAYDQHLNMVLSDVEETITVQELDPETYEEL 64
Query: 79 KKALPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 65 IK----QSKRTIEMLFVRGDVVILV 85
>gi|110743008|dbj|BAE99397.1| hypothetical protein [Arabidopsis thaliana]
Length = 96
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE+ PL ++ +S++ ++ + R++++L G++ AFD+H NM+L +V E+ T +
Sbjct: 3 EEDATVREPLDLIRLSIEE--RIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEI 60
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ + K R + +F+RGD VI+V
Sbjct: 61 DDETYEEIVRTTK-RTVPFLFVRGDGVILV 89
>gi|15218164|ref|NP_173542.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
gi|8920641|gb|AAF81363.1|AC036104_12 Contains similarity to Lsm3 protein from Homo sapiens gb|AJ238095
and contains a conserved Sm protein PF|01423 motif. EST
gb|AI998441 comes from this gene [Arabidopsis thaliana]
gi|12248017|gb|AAG50100.1|AF334722_1 unknown protein [Arabidopsis thaliana]
gi|332191952|gb|AEE30073.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
Length = 97
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE+ PL ++ +S++ ++ + R++++L G++ AFD+H NM+L +V E+ T +
Sbjct: 4 EEDATVREPLDLIRLSIEE--RIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEI 61
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ + K R + +F+RGD VI+V
Sbjct: 62 DDETYEEIVRTTK-RTVPFLFVRGDGVILV 90
>gi|25012398|gb|AAN71307.1| RE11655p [Drosophila melanogaster]
Length = 103
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + +V + RN ++L GR+ AFD+H NMVL + E T + + ++
Sbjct: 18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 75
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 76 YKTAK-RTIPMLFVRGDGVILV 96
>gi|351724771|ref|NP_001236557.1| uncharacterized protein LOC100306547 [Glycine max]
gi|255628849|gb|ACU14769.1| unknown [Glycine max]
Length = 97
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 72
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T +
Sbjct: 3 TEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIITTVE 60
Query: 73 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ + K R + +F+RGD VI+V
Sbjct: 61 IDDETYEEIVRTTK-RTVPFLFVRGDGVILV 90
>gi|170029969|ref|XP_001842863.1| snrnp sm protein [Culex quinquefasciatus]
gi|167865323|gb|EDS28706.1| snrnp sm protein [Culex quinquefasciatus]
Length = 101
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN ++L GR+ AFD+H NMVL + E T + + ++
Sbjct: 15 PLDLIRLSL--DEKIYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 72
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+K R I +F+RGD VI+V
Sbjct: 73 YKTSK-RTIPMLFVRGDGVILV 93
>gi|301106621|ref|XP_002902393.1| U6 snRNA-associated Sm-like protein LSm3, putative [Phytophthora
infestans T30-4]
gi|262098267|gb|EEY56319.1| U6 snRNA-associated Sm-like protein LSm3, putative [Phytophthora
infestans T30-4]
Length = 92
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 9/85 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT--EL-PKTGKGK 78
PL ++ +SV ++ + CR +++L G ++A+D+H NMVL +V E T EL P+T +
Sbjct: 7 PLDLIKLSVAE--RIYVKCRGDRELRGVLQAYDQHLNMVLSDVEETITVQELDPETYEEL 64
Query: 79 KKALPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 65 IK----QSKRTIEMLFVRGDVVILV 85
>gi|313247586|emb|CBY15769.1| unnamed protein product [Oikopleura dioica]
Length = 103
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L +S+ + ++ + RN ++L GR+ AFD+H NM+L +V E T + + ++
Sbjct: 19 PLDLLRLSL--DERIFVKLRNERELTGRLHAFDQHLNMILGDVEETVTNVEIDDETYEEI 76
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 77 YRQVK-RSIPMLFVRGDGVILV 97
>gi|351722343|ref|NP_001235961.1| uncharacterized protein LOC100499782 [Glycine max]
gi|255626487|gb|ACU13588.1| unknown [Glycine max]
Length = 97
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 72
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T +
Sbjct: 3 TEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
Query: 73 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ + K R + +F+RGD VI+V
Sbjct: 61 IDDETYEEIVRTTK-RTVPFLFVRGDGVILV 90
>gi|290989375|ref|XP_002677313.1| predicted protein [Naegleria gruberi]
gi|284090920|gb|EFC44569.1| predicted protein [Naegleria gruberi]
Length = 95
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + QV I + +++L G + A+D+H NMVL NV E E+ + ++
Sbjct: 9 PLDLIRLSL--DEQVYIKLKGDRELRGTLHAYDQHLNMVLGNVEETIHEIDIDKETNEQQ 66
Query: 82 LPVNKDRFISKMFLRGDSVIIVL 104
+ + R I +FLRGD VI+V+
Sbjct: 67 MK-STTRKIGMLFLRGDGVILVV 88
>gi|19112539|ref|NP_595747.1| U6 snRNP-associated protein Lsm3 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|10720084|sp|Q9Y7M4.2|LSM3_SCHPO RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm3
gi|6942158|emb|CAB42366.2| U6 snRNP-associated protein Lsm3 (predicted) [Schizosaccharomyces
pombe]
Length = 93
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + V + R +++L GR+ A+D H NMVL + E+ T K KA
Sbjct: 10 PLDLVRLSL--DEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKA 67
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
L + + +F+RGDSVI++
Sbjct: 68 LKTIRKHY-EMLFVRGDSVILI 88
>gi|429327225|gb|AFZ78985.1| U6 small nuclear ribonucleoprotein, putative [Babesia equi]
Length = 93
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 7/71 (9%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL---PKTGKGKKKALPVNKDRFISK 92
+ + C+ ++++GR+ A+D HCNM+L + +E T P T + KK+ V +D
Sbjct: 22 IYLRCKGGREIVGRLHAYDEHCNMILSDAKETITTAEIEPTTNEEIKKS--VQRDS--GT 77
Query: 93 MFLRGDSVIIV 103
+F+RGDS+I++
Sbjct: 78 VFIRGDSLILL 88
>gi|357475053|ref|XP_003607812.1| U6 snRNA-associated Sm-like protein LSm3 [Medicago truncatula]
gi|355508867|gb|AES90009.1| U6 snRNA-associated Sm-like protein LSm3 [Medicago truncatula]
Length = 98
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 72
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T +
Sbjct: 4 TEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 61
Query: 73 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ + K R + +F+RGD VI+V
Sbjct: 62 IDDETYEEIVRTTK-RTVPFLFVRGDGVILV 91
>gi|24649486|ref|NP_732931.1| LSm3, isoform A [Drosophila melanogaster]
gi|281362412|ref|NP_001163707.1| LSm3, isoform B [Drosophila melanogaster]
gi|23172108|gb|AAN13967.1| LSm3, isoform A [Drosophila melanogaster]
gi|189181823|gb|ACD81688.1| FI09213p [Drosophila melanogaster]
gi|272477132|gb|ACZ95002.1| LSm3, isoform B [Drosophila melanogaster]
Length = 103
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + +V + RN ++L GR+ AFD+H NMVL + E T + + ++
Sbjct: 18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 75
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 76 YKTAK-RTIPMLFVRGDGVILV 96
>gi|297850550|ref|XP_002893156.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
lyrata]
gi|297338998|gb|EFH69415.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
lyrata]
Length = 98
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE+ PL ++ +S++ ++ + R++++L G++ AFD+H NM+L +V E+ T +
Sbjct: 4 EEDATVREPLDLIRLSIEE--RIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTVEI 61
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ + K R + +F+RGD VI+V
Sbjct: 62 DDETYEEIVRTTK-RTVPFLFVRGDGVILV 90
>gi|157123813|ref|XP_001653925.1| snrnp sm protein [Aedes aegypti]
gi|108874209|gb|EAT38434.1| AAEL009671-PA [Aedes aegypti]
Length = 101
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN ++L GR+ AFD+H NMVL + E T + + ++
Sbjct: 15 PLDLIRLSL--DEKIYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 72
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 73 YKTTK-RTIPMLFVRGDGVILV 93
>gi|149235353|ref|XP_001523555.1| hypothetical protein LELG_05401 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452964|gb|EDK47220.1| hypothetical protein LELG_05401 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 90
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 10 NVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MW 68
VK E ++ PL ++ + + V++ R ++L G+++ +D HCNMVL + E ++
Sbjct: 3 TVKTEHQQLQE-PLDLIRFQLDDY--VVVKLRGARELYGKLQGYDSHCNMVLSDATETIY 59
Query: 69 TELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ P T KKK +F+RGDSVI++
Sbjct: 60 GDSPDTKPVKKKT---------DMVFVRGDSVILI 85
>gi|198433468|ref|XP_002128408.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm3
[Ciona intestinalis]
Length = 105
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + +V + RN ++L GR+ A+D+H NMVL V E T + + ++
Sbjct: 19 PLDLIRLSL--DERVYVKMRNERELRGRLHAYDQHLNMVLGEVEETVTAVEIDEETYEEI 76
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 77 YKQTK-RTIPMLFVRGDGVILV 97
>gi|156544005|ref|XP_001607844.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Nasonia
vitripennis]
Length = 103
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN ++L GR+ A+D+H NMVL V E T + + ++
Sbjct: 16 PLDLIRLSL--DERIYVKMRNERELRGRLHAYDQHLNMVLGEVEETVTTIEIDEETYEEV 73
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 74 YRTTK-RTIPMLFVRGDGVILV 94
>gi|388493932|gb|AFK35032.1| unknown [Lotus japonicus]
gi|388511495|gb|AFK43809.1| unknown [Lotus japonicus]
Length = 97
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T +
Sbjct: 4 EEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEI 61
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ + K R + +F+RGD VI+V
Sbjct: 62 DDETYEEIVRTTK-RTVPFLFVRGDGVILV 90
>gi|255583342|ref|XP_002532432.1| snrnp sm protein, putative [Ricinus communis]
gi|223527852|gb|EEF29947.1| snrnp sm protein, putative [Ricinus communis]
Length = 97
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 72
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T +
Sbjct: 3 TEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
Query: 73 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ + K R + +F+RGD VI+V
Sbjct: 61 IDDETYEEIVRTTK-RTVPFLFVRGDGVILV 90
>gi|297842449|ref|XP_002889106.1| hypothetical protein ARALYDRAFT_895567 [Arabidopsis lyrata subsp.
lyrata]
gi|297334947|gb|EFH65365.1| hypothetical protein ARALYDRAFT_895567 [Arabidopsis lyrata subsp.
lyrata]
Length = 98
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 72
EE+ PL ++ +S+ + ++ + R++++L G++ AFD+H NM+L +V E T +
Sbjct: 3 GEEDATVREPLDLIRLSL--DERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60
Query: 73 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ + K R I +F+RGD VI+V
Sbjct: 61 IDDETYEEIVRTTK-RTIEFLFVRGDGVILV 90
>gi|241171152|ref|XP_002410602.1| snrnp sm protein, putative [Ixodes scapularis]
gi|215494871|gb|EEC04512.1| snrnp sm protein, putative [Ixodes scapularis]
Length = 102
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN ++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 16 PLDLVRLSL--DEKIYVKMRNERELRGRLHAYDQHLNMILGDVEETVTSVEIDEETYEEV 73
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 74 YKSTK-RSIPMLFVRGDGVILV 94
>gi|332373734|gb|AEE62008.1| unknown [Dendroctonus ponderosae]
Length = 101
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 16 PLDLVRLSL--DEKIYVKMRNDRELKGRLHAYDQHMNMILSDVEETITTVEIDEETYEEV 73
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 74 YKSTK-RNIPMLFVRGDGVILV 94
>gi|224062892|ref|XP_002300922.1| predicted protein [Populus trichocarpa]
gi|222842648|gb|EEE80195.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 72
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T +
Sbjct: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
Query: 73 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ + + R + +F+RGD VI+V
Sbjct: 61 IDDETYEEIVRATR-RTVPFLFVRGDGVILV 90
>gi|260822318|ref|XP_002606549.1| hypothetical protein BRAFLDRAFT_247418 [Branchiostoma floridae]
gi|229291892|gb|EEN62559.1| hypothetical protein BRAFLDRAFT_247418 [Branchiostoma floridae]
Length = 98
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 11 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEI 68
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 69 YKTTK-RNIPMLFVRGDGVILV 89
>gi|224085111|ref|XP_002307496.1| predicted protein [Populus trichocarpa]
gi|359493111|ref|XP_002266320.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform 1
[Vitis vinifera]
gi|222856945|gb|EEE94492.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 72
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T +
Sbjct: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
Query: 73 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ + + R + +F+RGD VI+V
Sbjct: 61 IDDETYEEIVRTTR-RTVPFLFVRGDGVILV 90
>gi|110755468|ref|XP_001121255.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Apis
mellifera]
gi|340729056|ref|XP_003402825.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 1
[Bombus terrestris]
gi|340729058|ref|XP_003402826.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 2
[Bombus terrestris]
gi|350401475|ref|XP_003486164.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Bombus
impatiens]
gi|380013750|ref|XP_003690912.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Apis
florea]
Length = 103
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN ++L GR+ A+D+H NMVL E T + + ++
Sbjct: 16 PLDLIRLSL--DERIYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEEV 73
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R IS +F+RGD VI+V
Sbjct: 74 YRTTK-RNISMLFVRGDGVILV 94
>gi|291239206|ref|XP_002739490.1| PREDICTED: Lsm3 protein-like [Saccoglossus kowalevskii]
Length = 103
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 16 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEI 73
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 74 YKSTK-RNIPMLFVRGDGVILV 94
>gi|383857174|ref|XP_003704080.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Megachile
rotundata]
Length = 103
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN ++L GR+ A+D+H NMVL E T + + ++
Sbjct: 16 PLDLIRLSL--DERIYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEEV 73
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R IS +F+RGD VI+V
Sbjct: 74 YRTTK-RNISMLFVRGDGVILV 94
>gi|307178237|gb|EFN67022.1| U6 snRNA-associated Sm-like protein LSm3 [Camponotus floridanus]
Length = 98
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S++ ++ + RN ++L G++ AFD+H NMVL +V E+ + + + +
Sbjct: 16 PLDLIKLSLEE--RIYVKMRNERELRGKLHAFDQHLNMVLGDVEEIIN-IVEIDEETYEE 72
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K R I +F+RGD VI+V
Sbjct: 73 IYRQKKRTIQMLFVRGDGVILV 94
>gi|302855073|ref|XP_002959037.1| hypothetical protein VOLCADRAFT_108433 [Volvox carteri f.
nagariensis]
gi|300255603|gb|EFJ39898.1| hypothetical protein VOLCADRAFT_108433 [Volvox carteri f.
nagariensis]
Length = 97
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + R ++L GR+ A+D+H NM+L V E T + + ++
Sbjct: 13 PLDLIRLSL--DERIYVKLRGERELRGRLHAYDQHLNMILGEVEETLTTVEIDDETYEEI 70
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K R I +F+RGD VI+V
Sbjct: 71 IKTQK-RVIPFLFVRGDGVILV 91
>gi|126336227|ref|XP_001366562.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 1
[Monodelphis domestica]
gi|149636433|ref|XP_001506609.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Ornithorhynchus anatinus]
Length = 102
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gi|300120504|emb|CBK20058.2| Like-Sm ribonucleoprotein, core [Blastocystis hominis]
Length = 458
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 9/85 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL---PKTGKGK 78
P ++ +S+ + +V+I CR+ +++ G++ A+D+H NMV+ N +E T + P+T
Sbjct: 374 PFDLIRLSL--DEEVVIKCRHGREIRGKLLAYDQHLNMVVSNAKETQTIVTVDPETNNEV 431
Query: 79 KKALPVNKDRFISKMFLRGDSVIIV 103
KK N R ++LRGD+VI++
Sbjct: 432 KK----NVVRNFEALYLRGDAVILI 452
>gi|339240555|ref|XP_003376203.1| putative LSM domain protein [Trichinella spiralis]
gi|316975093|gb|EFV58552.1| putative LSM domain protein [Trichinella spiralis]
Length = 109
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
P+ ++ +S+ + ++ + R+N++L GR+ A+D+H NMVL +V E+ T + + ++
Sbjct: 18 PMDLVRLSL--DERIFVKLRSNRELRGRLHAYDQHLNMVLGDVEEIETIVEIDDETYEEV 75
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
N R +F+RGD VI+V
Sbjct: 76 YTKNT-RTFPMLFIRGDGVILV 96
>gi|256085603|ref|XP_002579006.1| snrnp sm protein [Schistosoma mansoni]
gi|353230199|emb|CCD76370.1| putative snrnp sm protein [Schistosoma mansoni]
Length = 103
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + + N++L G + AFD H NM+L NV E T L + ++
Sbjct: 19 PLDLIRLSL--DEKIYVKMKRNRELRGVLHAFDSHLNMILGNVEETVTTLEIDEETYEEV 76
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 77 YKTTK-RTIPMLFIRGDGVILV 97
>gi|140832760|gb|AAI35705.1| LOC100125161 protein [Xenopus (Silurana) tropicalis]
Length = 100
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 15 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 72
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD V++V
Sbjct: 73 YKSTK-RNIPMLFVRGDGVVLV 93
>gi|350536047|ref|NP_001232226.1| putative sm like protein U6 snRNA-associated Sm-like protein
[Taeniopygia guttata]
gi|50754429|ref|XP_414380.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Gallus gallus]
gi|327265982|ref|XP_003217786.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Anolis
carolinensis]
gi|197127206|gb|ACH43704.1| putative sm like protein U6 snRNA-associated Sm-like protein
[Taeniopygia guttata]
Length = 102
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gi|226469802|emb|CAX70182.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
gi|226469804|emb|CAX70183.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
gi|226487552|emb|CAX74646.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
Length = 105
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + + N++L G + AFD H NM+L NV E T L + ++
Sbjct: 21 PLDLIRLSL--DEKIYVKMKRNRELRGILHAFDSHLNMILGNVEETVTTLEIDEETYEEV 78
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 79 YKTTK-RTIPMLFIRGDGVILV 99
>gi|288683438|ref|NP_001165758.1| LSM3 homolog, U6 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|161612120|gb|AAI56008.1| Unknown (protein for MGC:185368) [Xenopus (Silurana) tropicalis]
Length = 102
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gi|66804949|ref|XP_636207.1| hypothetical protein DDB_G0289453 [Dictyostelium discoideum AX4]
gi|74852215|sp|Q54HH8.1|SMDL_DICDI RecName: Full=Small nuclear ribonucleoprotein Sm D-like protein
gi|60464569|gb|EAL62706.1| hypothetical protein DDB_G0289453 [Dictyostelium discoideum AX4]
Length = 257
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 11 VKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVR----AFDRHCNMVLENVRE 66
+KN +F GPLS+L ++++ +++ + R + G R AFD+H N++L +V E
Sbjct: 155 LKNISNKFTDGPLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIILRDVEE 214
Query: 67 MWT---ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
+ LP T + P K R+ ++F++GD+V+ V+
Sbjct: 215 EYDLLKSLPSTRNQNQPIQPKIK-RYYGQLFIKGDTVVSVI 254
>gi|449302452|gb|EMC98461.1| hypothetical protein BAUCODRAFT_138202 [Baudoinia compniacensis
UAMH 10762]
Length = 95
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 7/83 (8%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ N V + R +++L GR+ A+D HCN+VL V E ++ + G+
Sbjct: 15 PLDLVRLSL--NETVFVKLRGDRELQGRLHAYDSHCNLVLGEVTETIYQVAEEAGGED-- 70
Query: 82 LPVNKDRFISKM-FLRGDSVIIV 103
V + S+M F+RGDSV+++
Sbjct: 71 --VRTLKKQSEMLFVRGDSVVLI 91
>gi|7657315|ref|NP_055278.1| U6 snRNA-associated Sm-like protein LSm3 [Homo sapiens]
gi|13385806|ref|NP_080585.1| U6 snRNA-associated Sm-like protein LSm3 [Mus musculus]
gi|82697405|ref|NP_001032564.1| U6 snRNA-associated Sm-like protein LSm3 [Bos taurus]
gi|157819827|ref|NP_001100081.1| U6 snRNA-associated Sm-like protein LSm3 [Rattus norvegicus]
gi|349732213|ref|NP_001231857.1| LSM3 homolog, U6 small nuclear RNA associated [Sus scrofa]
gi|386780796|ref|NP_001248293.1| U6 snRNA-associated Sm-like protein LSm3 [Macaca mulatta]
gi|73984534|ref|XP_849275.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Canis lupus familiaris]
gi|73984536|ref|XP_858392.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 2
[Canis lupus familiaris]
gi|114585529|ref|XP_001157526.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1 [Pan
troglodytes]
gi|291393472|ref|XP_002713225.1| PREDICTED: Lsm3 protein [Oryctolagus cuniculus]
gi|291396667|ref|XP_002714873.1| PREDICTED: Lsm3 protein [Oryctolagus cuniculus]
gi|296225915|ref|XP_002758699.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Callithrix jacchus]
gi|297670014|ref|XP_002813175.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Pongo abelii]
gi|301770625|ref|XP_002920730.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like
[Ailuropoda melanoleuca]
gi|332231761|ref|XP_003265063.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Nomascus leucogenys]
gi|338714585|ref|XP_003363113.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Equus
caballus]
gi|344275971|ref|XP_003409784.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Loxodonta
africana]
gi|348554867|ref|XP_003463246.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cavia
porcellus]
gi|354465501|ref|XP_003495218.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Cricetulus griseus]
gi|395847186|ref|XP_003796264.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Otolemur
garnettii]
gi|397511859|ref|XP_003826280.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Pan paniscus]
gi|402887020|ref|XP_003906905.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Papio anubis]
gi|403268321|ref|XP_003926225.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Saimiri
boliviensis boliviensis]
gi|410951784|ref|XP_003982573.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Felis catus]
gi|426249725|ref|XP_004018600.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Ovis aries]
gi|426339551|ref|XP_004033712.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Gorilla
gorilla gorilla]
gi|55977170|sp|P62311.2|LSM3_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|61227725|sp|P62310.2|LSM3_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|115311781|sp|Q32PE9.3|LSM3_BOVIN RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|5919147|gb|AAD56227.1|AF182289_1 U6 snRNA-associated Sm-like protein LSm3 [Homo sapiens]
gi|10197636|gb|AAG14954.1|AF182418_1 MDS017 [Homo sapiens]
gi|5262856|emb|CAB45866.1| Lsm3 protein [Homo sapiens]
gi|12833592|dbj|BAB22585.1| unnamed protein product [Mus musculus]
gi|12841666|dbj|BAB25303.1| unnamed protein product [Mus musculus]
gi|13937895|gb|AAH07055.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Homo
sapiens]
gi|32484176|gb|AAH54368.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus
musculus]
gi|38566272|gb|AAH62875.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus
musculus]
gi|48146487|emb|CAG33466.1| LSM3 [Homo sapiens]
gi|81294362|gb|AAI08143.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Bos
taurus]
gi|119584594|gb|EAW64190.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Homo
sapiens]
gi|148666888|gb|EDK99304.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus
musculus]
gi|149036753|gb|EDL91371.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted) [Rattus norvegicus]
gi|169144524|gb|ACA49102.1| LSM3-like protein [Ailuropoda melanoleuca]
gi|208966680|dbj|BAG73354.1| LSM3 homolog, U6 small nuclear RNA associated [synthetic construct]
gi|296474665|tpg|DAA16780.1| TPA: U6 snRNA-associated Sm-like protein LSm3 [Bos taurus]
gi|355564515|gb|EHH21015.1| hypothetical protein EGK_03987 [Macaca mulatta]
gi|355732826|gb|AES10821.1| LSM3-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
gi|355786357|gb|EHH66540.1| hypothetical protein EGM_03552 [Macaca fascicularis]
gi|380811798|gb|AFE77774.1| U6 snRNA-associated Sm-like protein LSm3 [Macaca mulatta]
gi|410207716|gb|JAA01077.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410248718|gb|JAA12326.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410291826|gb|JAA24513.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|417395685|gb|JAA44891.1| Putative small nuclear ribonucleoprotein snrnp lsm3 [Desmodus
rotundus]
gi|431916913|gb|ELK16669.1| U6 snRNA-associated Sm-like protein LSm3 [Pteropus alecto]
Length = 102
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gi|324523019|gb|ADY48176.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324523877|gb|ADY48319.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324527206|gb|ADY48760.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324527733|gb|ADY48837.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324528368|gb|ADY48905.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324528673|gb|ADY48938.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
Length = 105
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN++++ GR+ AFD+H NM+L V E T + + + +
Sbjct: 20 PLDLIRLSL--DERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTV-ELDEENFEE 76
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ R I +F+RGD++I+V
Sbjct: 77 MHKQTKRHIPMLFVRGDAIILV 98
>gi|432858806|ref|XP_004068948.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Oryzias
latipes]
Length = 102
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + + +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTV-EIDEETYEE 73
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
L + R I +F+RGD V++V
Sbjct: 74 LYKSTKRNIPMLFVRGDGVVLV 95
>gi|242059351|ref|XP_002458821.1| hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor]
gi|194699902|gb|ACF84035.1| unknown [Zea mays]
gi|195628156|gb|ACG35908.1| U6 snRNA-associated Sm-like protein LSm3 [Zea mays]
gi|195643108|gb|ACG41022.1| U6 snRNA-associated Sm-like protein LSm3 [Zea mays]
gi|241930796|gb|EES03941.1| hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor]
Length = 98
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T +
Sbjct: 5 EEEIAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 62
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ + K R I +F+RGD VI+V
Sbjct: 63 DDETYEEIVRTTK-RTIPFLFVRGDGVILV 91
>gi|320167518|gb|EFW44417.1| hypothetical protein CAOG_02442 [Capsaspora owczarzaki ATCC 30864]
Length = 106
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++L+ R +++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 21 PLDLIKLSL--DERILVKMRGDRELRGRLHAYDQHLNMILSDVEETVTTVEIDEETFEEM 78
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K R + +F+RGD VI+V
Sbjct: 79 VKTTK-REVPMLFVRGDGVILV 99
>gi|348514181|ref|XP_003444619.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Oreochromis niloticus]
gi|348520372|ref|XP_003447702.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Oreochromis niloticus]
Length = 102
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + + +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTV-EIDEETYEE 73
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
L + R I +F+RGD V++V
Sbjct: 74 LYKSTKRNIPMLFVRGDGVVLV 95
>gi|410930335|ref|XP_003978554.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Takifugu
rubripes]
gi|47206420|emb|CAF94178.1| unnamed protein product [Tetraodon nigroviridis]
Length = 102
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + + +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTV-EIDEETYEE 73
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
L + R I +F+RGD V++V
Sbjct: 74 LYKSTKRNIPMLFVRGDGVVLV 95
>gi|242009034|ref|XP_002425298.1| snrnp sm protein, putative [Pediculus humanus corporis]
gi|212509063|gb|EEB12560.1| snrnp sm protein, putative [Pediculus humanus corporis]
Length = 102
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN ++L GR+ A+D+H NMVL + E T + + ++
Sbjct: 16 PLDLIRLSL--DERIYVKMRNERELRGRLHAYDQHLNMVLGDAEETVTTVEIDEETYEEV 73
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 74 YKTTK-RTIPMLFVRGDGVILV 94
>gi|225707460|gb|ACO09576.1| U6 snRNA-associated Sm-like protein LSm3 [Osmerus mordax]
Length = 104
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + + +
Sbjct: 19 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTV-EIDEETYEE 75
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
L + R I +F+RGD V++V
Sbjct: 76 LYKSTKRNIPMLFVRGDGVVLV 97
>gi|281344332|gb|EFB19916.1| hypothetical protein PANDA_009501 [Ailuropoda melanoleuca]
gi|351695767|gb|EHA98685.1| U6 snRNA-associated Sm-like protein LSm3, partial [Heterocephalus
glaber]
gi|440903568|gb|ELR54207.1| U6 snRNA-associated Sm-like protein LSm3, partial [Bos grunniens
mutus]
Length = 96
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 11 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 68
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD V++V
Sbjct: 69 YKSTK-RNIPMLFVRGDGVVLV 89
>gi|159479600|ref|XP_001697878.1| Sm protein [Chlamydomonas reinhardtii]
gi|158273976|gb|EDO99761.1| Sm protein [Chlamydomonas reinhardtii]
Length = 97
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + R ++L GR+ A+D+H NM+L V E T + + ++
Sbjct: 13 PLDLIRLSL--DERIYVKLRGERELRGRLHAYDQHLNMILGEVEETLTTVEIDDETYEEI 70
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K R I +F+RGD +I+V
Sbjct: 71 IKTQK-RVIPFLFVRGDGIILV 91
>gi|326678810|ref|XP_003201179.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 1
[Danio rerio]
gi|326678812|ref|XP_003201180.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 2
[Danio rerio]
Length = 102
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEI 74
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gi|332021459|gb|EGI61827.1| U6 snRNA-associated Sm-like protein LSm3 [Acromyrmex echinatior]
Length = 125
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S++ ++ + RN ++L G++ AFD+H NMVL +V E+ + + + +
Sbjct: 43 PLDLIKLSLEE--RIYVKMRNERELRGKLHAFDQHLNMVLGDVEEIIN-IVEIDEETYEE 99
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K R I +F+RGD VI+V
Sbjct: 100 IYRQKKRTIQMLFVRGDGVILV 121
>gi|449276686|gb|EMC85118.1| U6 snRNA-associated Sm-like protein LSm3, partial [Columba livia]
Length = 95
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 10 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 67
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD V++V
Sbjct: 68 YKSTK-RNIPMLFVRGDGVVLV 88
>gi|225717088|gb|ACO14390.1| U6 snRNA-associated Sm-like protein LSm3 [Esox lucius]
Length = 102
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEI 74
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gi|307206257|gb|EFN84322.1| U6 snRNA-associated Sm-like protein LSm3 [Harpegnathos saltator]
Length = 96
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN ++L GR+ A+D+H NMVL E T + + ++
Sbjct: 9 PLDLIRLSL--DERIYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEEV 66
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R IS +F+RGD VI+V
Sbjct: 67 YRTTK-RNISMLFVRGDGVILV 87
>gi|296005050|ref|XP_002808862.1| lsm3 homologue, putative [Plasmodium falciparum 3D7]
gi|225632259|emb|CAX64140.1| lsm3 homologue, putative [Plasmodium falciparum 3D7]
Length = 91
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 17/76 (22%)
Query: 35 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM- 93
++ + C+ +++L+G++ A+D H NM+L NVRE + K ++ N + + KM
Sbjct: 21 EIFLKCKGDRELIGKLDAYDNHLNMILSNVRETY----------KYSVKENDEETVKKME 70
Query: 94 ------FLRGDSVIIV 103
F+RGDS+I+V
Sbjct: 71 RNLDMVFVRGDSIILV 86
>gi|387914480|gb|AFK10849.1| LSM3-like protein [Callorhinchus milii]
gi|392883596|gb|AFM90630.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
gi|392883672|gb|AFM90668.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
gi|392884122|gb|AFM90893.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
Length = 102
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEI 74
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gi|325183158|emb|CCA17616.1| U6 snRNAassociated Smlike protein LSm3 putative [Albugo laibachii
Nc14]
Length = 92
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ ++ + CR +++L G + A+D+H NMVL V E T + + + +
Sbjct: 7 PLDLVKLSI--GERIYVKCRGDRELRGLLHAYDQHLNMVLSEVEETVT-VQELDEETYEE 63
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ R + +F+RGD+VI+V
Sbjct: 64 IIKQSKRQVEMLFIRGDAVILV 85
>gi|326928055|ref|XP_003210200.1| PREDICTED: LOW QUALITY PROTEIN: u6 snRNA-associated Sm-like protein
LSm3-like [Meleagris gallopavo]
Length = 108
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 23 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 80
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD V++V
Sbjct: 81 YKSTK-RNIPMLFVRGDGVVLV 101
>gi|209736444|gb|ACI69091.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 59
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/26 (88%), Positives = 24/26 (92%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNN 43
FNTGPLSVL SVKNNTQVL+NCRNN
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNN 49
>gi|315042007|ref|XP_003170380.1| hypothetical protein MGYG_07624 [Arthroderma gypseum CBS 118893]
gi|327298847|ref|XP_003234117.1| U6 small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
gi|311345414|gb|EFR04617.1| hypothetical protein MGYG_07624 [Arthroderma gypseum CBS 118893]
gi|326464295|gb|EGD89748.1| U6 small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
Length = 100
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E + + G++
Sbjct: 16 PLDLVRLSL--DEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVEEDEAGEETI 73
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K +F+RGDSV+++
Sbjct: 74 KTIKKQE--EMLFVRGDSVVLI 93
>gi|195573319|ref|XP_002104641.1| GD21053 [Drosophila simulans]
gi|194200568|gb|EDX14144.1| GD21053 [Drosophila simulans]
Length = 218
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + +V + RN ++L GR+ AFD+H NMVL + E T + + ++
Sbjct: 18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 75
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 76 YKTAK-RTIPMLFVRGDGVILV 96
>gi|147903851|ref|NP_001091408.1| LSM3 homolog, U6 small nuclear RNA associated [Xenopus laevis]
gi|126631439|gb|AAI33265.1| LOC100049097 protein [Xenopus laevis]
Length = 102
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gi|168005030|ref|XP_001755214.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693807|gb|EDQ80158.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 97
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 72
EE+ PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L V E+ T +
Sbjct: 3 TEEDSAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGEVEEVTTSVE 60
Query: 73 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ + ++ R + +F+RGD VI+V
Sbjct: 61 IDDETYEEIVRTSR-RTVPYLFVRGDGVILV 90
>gi|195452910|ref|XP_002073554.1| GK14178 [Drosophila willistoni]
gi|194169639|gb|EDW84540.1| GK14178 [Drosophila willistoni]
Length = 256
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + +V + RN ++L GR+ AFD+H NMVL + E T + + ++
Sbjct: 171 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 228
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 229 YKTTK-RTIPMLFVRGDGVILV 249
>gi|391337947|ref|XP_003743325.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Metaseiulus occidentalis]
Length = 103
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN ++L GR+ A+D+H NMVL +V E T + + ++
Sbjct: 17 PLDMVRLSL--DERIYVKMRNERELRGRLHAYDQHLNMVLGDVEETVTSVEIDEETFEEV 74
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
++ R I +F+RGD VI+V
Sbjct: 75 YKTSR-RSIPMLFVRGDGVILV 95
>gi|390981129|pdb|4EMG|A Chain A, Crystal Structure Of Splsm3
gi|390981130|pdb|4EMG|B Chain B, Crystal Structure Of Splsm3
gi|390981131|pdb|4EMG|C Chain C, Crystal Structure Of Splsm3
gi|390981132|pdb|4EMG|D Chain D, Crystal Structure Of Splsm3
gi|390981133|pdb|4EMG|E Chain E, Crystal Structure Of Splsm3
gi|390981134|pdb|4EMG|F Chain F, Crystal Structure Of Splsm3
gi|390981135|pdb|4EMG|G Chain G, Crystal Structure Of Splsm3
gi|390981136|pdb|4EMG|H Chain H, Crystal Structure Of Splsm3
gi|390981137|pdb|4EMG|I Chain I, Crystal Structure Of Splsm3
gi|390981138|pdb|4EMG|J Chain J, Crystal Structure Of Splsm3
gi|390981139|pdb|4EMG|K Chain K, Crystal Structure Of Splsm3
gi|390981140|pdb|4EMG|L Chain L, Crystal Structure Of Splsm3
gi|390981141|pdb|4EMG|M Chain M, Crystal Structure Of Splsm3
gi|390981142|pdb|4EMG|N Chain N, Crystal Structure Of Splsm3
Length = 93
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + V + R +++L GR+ A+D H N VL + E+ T K KA
Sbjct: 10 PLDLVRLSL--DEIVYVKLRGDRELNGRLHAYDEHLNXVLGDAEEIVTIFDDEETDKDKA 67
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
L + + +F+RGDSVI++
Sbjct: 68 LKTIRKHY-EXLFVRGDSVILI 88
>gi|198477433|ref|XP_002136614.1| GA29224 [Drosophila pseudoobscura pseudoobscura]
gi|198142906|gb|EDY71618.1| GA29224 [Drosophila pseudoobscura pseudoobscura]
Length = 167
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + +V + RN ++L GR+ AFD+H NMVL + E T + + ++
Sbjct: 82 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 139
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 140 YKTTK-RTIPMLFVRGDGVILV 160
>gi|350536415|ref|NP_001233054.1| uncharacterized protein LOC100167860 [Acyrthosiphon pisum]
gi|239792347|dbj|BAH72527.1| ACYPI008615 [Acyrthosiphon pisum]
Length = 106
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
P+ ++ +SV + ++ + R++++L GR+ AFD+H NMVL E T + + ++
Sbjct: 21 PVDLIRLSV--DERIYVKMRHDRELRGRLHAFDQHLNMVLGEAEETITTIEVDEETFEEV 78
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 79 YKTTK-RTIPMLFVRGDGVILV 99
>gi|357126029|ref|XP_003564691.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform 1
[Brachypodium distachyon]
Length = 98
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T +
Sbjct: 5 EEEIAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEI 62
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ + + R I +F+RGD VI+V
Sbjct: 63 DDETYEEIVRTTR-RTIPFLFVRGDGVILV 91
>gi|326483593|gb|EGE07603.1| hypothetical protein TEQG_06517 [Trichophyton equinum CBS 127.97]
Length = 100
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E + + G++
Sbjct: 16 PLDLVRLSL--DEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVEENEAGEETI 73
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K +F+RGDSV+++
Sbjct: 74 KTIKKQE--EMLFVRGDSVVLI 93
>gi|387598163|gb|AFJ91737.1| Lsm3 protein [Ostrea edulis]
Length = 103
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
Query: 11 VKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 70
V+N EE PL ++ +S+ + ++ + RN ++L GR+ A+D+H NM+L +V E T
Sbjct: 11 VQNAEE-----PLDLIRLSL--DERIYVKMRNERELRGRLNAYDQHLNMILGDVEETVTT 63
Query: 71 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ + ++ K R I +F+RGD VI+V
Sbjct: 64 VEIDEETFEEIYKSTK-RNIPMLFVRGDGVILV 95
>gi|340370917|ref|XP_003383992.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like
[Amphimedon queenslandica]
Length = 105
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ FD+H NM++ V E T L + ++
Sbjct: 17 PLDLVRLSL--DERLYVKMRNDRELTGRLHGFDQHLNMIMSEVEETVTTLELDEETFEEI 74
Query: 82 LPVNKDRFISKMFLRGDSVIIVLRNP 107
+ R I +F+RGD VI++ +P
Sbjct: 75 YRTTQ-RTIPMIFIRGDGVILISPSP 99
>gi|357615889|gb|EHJ69888.1| LSM Sm-like protein family member [Danaus plexippus]
Length = 102
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN ++L G++ A+D+H NMVL + E T + + ++
Sbjct: 16 PLDLIRLSL--DERIYVKMRNERELRGKLHAYDQHLNMVLGDAEETITTVEIDEETYEEV 73
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
NK R I +F+RGD VI+V
Sbjct: 74 YRTNK-RNIPMLFVRGDGVILV 94
>gi|225713042|gb|ACO12367.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus salmonis]
Length = 105
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN ++L GR+ A+D+H NM+L V E T + + ++
Sbjct: 19 PLDLIRLSL--DERIYVKMRNERELKGRLNAYDQHLNMILGEVEETVTSIEIDEETYEEV 76
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 77 YRTTK-RNIPMLFVRGDGVILV 97
>gi|281200512|gb|EFA74730.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 99
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 9 DNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 68
D K EE PL ++ +S+ + ++ + R +++L G++ A+D+H NM+L NV E
Sbjct: 2 DQSKKEEGSIEE-PLDLIRLSL--DERIFVKMRQDRELRGKLHAYDQHLNMILSNVEETI 58
Query: 69 TELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ K + ++ + N R I +F+RGD VI++
Sbjct: 59 KVVEKDEETDEEIVK-NIKRNIDMLFVRGDGVILI 92
>gi|307104511|gb|EFN52764.1| hypothetical protein CHLNCDRAFT_26410 [Chlorella variabilis]
Length = 99
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL-- 71
EEE PL ++ +S+ + +V + + ++L G++ A+D+H NM+L +V E T +
Sbjct: 3 EEENTVREPLDLIRLSL--DEKVYVKLKGERELRGKLHAYDQHLNMILGDVEETVTSVEI 60
Query: 72 -PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+T + KA + R + +F+RGD VI+V
Sbjct: 61 DEETFEEIIKASEGDSSRMVPYLFVRGDGVILV 93
>gi|167375897|ref|XP_001733767.1| snrnp sm protein [Entamoeba dispar SAW760]
gi|165904941|gb|EDR30063.1| snrnp sm protein, putative [Entamoeba dispar SAW760]
Length = 99
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 17/82 (20%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
P+ ++ +S+ +N + I R +KL G++RAFD+H N++L +V E + E K +
Sbjct: 30 PIDLIKLSLDDN--IFIKLRGGRKLKGKLRAFDQHLNIILTDVNETYQE-------KTRT 80
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
PV +++RGD V+++
Sbjct: 81 FPV--------LYVRGDLVVLI 94
>gi|115441259|ref|NP_001044909.1| Os01g0866700 [Oryza sativa Japonica Group]
gi|56785201|dbj|BAD81919.1| small nuclear ribonucleoprotein-like [Oryza sativa Japonica Group]
gi|113534440|dbj|BAF06823.1| Os01g0866700 [Oryza sativa Japonica Group]
gi|125528497|gb|EAY76611.1| hypothetical protein OsI_04561 [Oryza sativa Indica Group]
gi|125572761|gb|EAZ14276.1| hypothetical protein OsJ_04201 [Oryza sativa Japonica Group]
gi|215708805|dbj|BAG94074.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765758|dbj|BAG87455.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 104
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T + + ++
Sbjct: 19 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEI 76
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K R I +F+RGD VI+V
Sbjct: 77 VRTTK-RTIPFLFVRGDGVILV 97
>gi|449497088|ref|XP_004160308.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cucumis
sativus]
Length = 97
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 72
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E T +
Sbjct: 3 TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
Query: 73 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ + ++ R + +F+RGD VI+V
Sbjct: 61 IDDETYEEIVRTSR-RTVPFLFVRGDGVILV 90
>gi|226443270|ref|NP_001139841.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221219250|gb|ACM08286.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221219990|gb|ACM08656.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221221030|gb|ACM09176.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
Length = 102
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTTVEIDEETYEEI 74
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gi|452823867|gb|EME30874.1| U6 snRNA-associated Sm-like protein LSm3 [Galdieria sulphuraria]
Length = 90
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 55/85 (64%), Gaps = 9/85 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP---KTGKGK 78
PL ++++++ + ++L+ R +++L G+++AFD+H N+VL +V E ++ +TG+
Sbjct: 5 PLDLILLAL--DEEILVKLRGDRELRGKLQAFDQHMNLVLSDVEETALKVEVDDETGEEL 62
Query: 79 KKALPVNKDRFISKMFLRGDSVIIV 103
KA+ R + +F+RGD VI+V
Sbjct: 63 IKAVK----RKMPMLFVRGDGVILV 83
>gi|225713400|gb|ACO12546.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus salmonis]
Length = 105
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN ++L GR+ A+D+H NM+L V E T + + ++
Sbjct: 19 PLDLIRLSL--DERIYVKMRNERELKGRLNAYDQHLNMILGEVAETVTSIEIDEETYEEV 76
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 77 YRTTK-RNIPMLFVRGDGVILV 97
>gi|393909110|gb|EJD75322.1| hypothetical protein LOAG_17508 [Loa loa]
Length = 103
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN++++ GR+ AFD+H NM+L V E T + + ++
Sbjct: 18 PLDLIRLSL--DERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVELDEENFEEM 75
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD++I+V
Sbjct: 76 HKQTK-RQIPMLFVRGDAIILV 96
>gi|189053316|dbj|BAG35122.1| unnamed protein product [Homo sapiens]
Length = 102
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL + +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDPIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gi|91087977|ref|XP_973274.1| PREDICTED: similar to LSM Sm-like protein family member [Tribolium
castaneum]
gi|270011905|gb|EFA08353.1| hypothetical protein TcasGA2_TC005996 [Tribolium castaneum]
Length = 101
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN++++ GR+ A+D+H NM+L + E T + + ++
Sbjct: 16 PLDLVRLSL--DERIYVKMRNDREIRGRLHAYDQHMNMILSDAEETITTVEIDEETYEEV 73
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 74 YRTTK-RNIPMLFVRGDGVILV 94
>gi|300681475|emb|CBH32569.1| U6 snRNA-associated Sm-like protein, expressed [Triticum aestivum]
Length = 98
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T + + ++
Sbjct: 13 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEI 70
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ + R I +F+RGD VI+V
Sbjct: 71 VRTTR-RAIPFLFVRGDGVILV 91
>gi|347966098|ref|XP_003435864.1| AGAP013519-PA [Anopheles gambiae str. PEST]
gi|333470212|gb|EGK97549.1| AGAP013519-PA [Anopheles gambiae str. PEST]
Length = 101
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + R ++L GR+ AFD+H NMVL + E T + + ++
Sbjct: 15 PLDLIRLSL--DEKIYVKMRYERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 72
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 73 YKTTK-RTIPMLFVRGDGVILV 93
>gi|395843168|ref|XP_003794368.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Otolemur
garnettii]
Length = 99
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 14 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 71
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F++GD V++V
Sbjct: 72 YKSTK-RNIPMLFVQGDGVVLV 92
>gi|296423190|ref|XP_002841138.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637372|emb|CAZ85329.1| unnamed protein product [Tuber melanosporum]
Length = 95
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 7/83 (8%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKK 80
PL ++ +S+ + QV + R +++L GR+ A+D HCN+VL +V E ++T G ++
Sbjct: 13 PLDLVRLSL--DEQVFVKLRGDRELRGRLHAYDSHCNLVLGDVEETIYT----VGDDEED 66
Query: 81 ALPVNKDRFISKMFLRGDSVIIV 103
+ +F+RGDSV+++
Sbjct: 67 DSVKTIKKQSEMLFVRGDSVVLI 89
>gi|255727663|ref|XP_002548757.1| hypothetical protein CTRG_03054 [Candida tropicalis MYA-3404]
gi|240133073|gb|EER32629.1| hypothetical protein CTRG_03054 [Candida tropicalis MYA-3404]
Length = 92
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 15 EEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKT 74
E+ + PL ++ + + VL+ R ++L G+++ +D HCNMVL + +E L +
Sbjct: 7 EQREDQQPLDLIRFQL--DEYVLVKLRGARELKGKLQGYDSHCNMVLSDAQEFIYSLDEN 64
Query: 75 GKGKKKALPVNKDRFISKMFLRGDSVIIV 103
K K P+ K +F+RGDSVI++
Sbjct: 65 SKIKD---PIVKK--TDMVFVRGDSVILI 88
>gi|442761385|gb|JAA72851.1| Putative u6 small nuclear rna associated, partial [Ixodes ricinus]
Length = 148
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN ++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 62 PLDLVRLSL--DEKIYVKMRNERELRGRLHAYDQHLNMILGDVEETVTSVEIDEETYEEV 119
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 120 YKSTK-RSIPMLFVRGDGVILV 140
>gi|332262690|ref|XP_003280392.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Nomascus
leucogenys]
Length = 102
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + +T + +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTI-ETDEETYEE 73
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ + R I +F+ GD V++V
Sbjct: 74 IYKSTKRNIPMLFVWGDGVVLV 95
>gi|219129945|ref|XP_002185137.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403316|gb|EEC43269.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 89
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + +V + CR +++L G++ +D+H NM+L +V E T + + +
Sbjct: 4 PLDLIRLSI--DERVYVKCRGDRELRGKLHGYDQHLNMILGDVEETVTS-TEIDEETDEQ 60
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ + R + +F+RGD V++V
Sbjct: 61 IVKKQTRKVGMLFVRGDIVVLV 82
>gi|253748557|gb|EET02611.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia
intestinalis ATCC 50581]
Length = 126
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 18/97 (18%)
Query: 9 DNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 68
D E EF PL +L S+++ +L+ +NN + G + +FD H N++L N E
Sbjct: 41 DRASPEYTEF-ANPLYLLKTSLEDRITILL--QNNSSVTGLLASFDEHMNIILINAEE-- 95
Query: 69 TELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 105
TG P+N RF +F+RGDS+I V R
Sbjct: 96 -----TGH------PLN--RFFPLLFIRGDSIIFVTR 119
>gi|326501494|dbj|BAK02536.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 121
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T + + ++
Sbjct: 36 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEI 93
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ + R I +F+RGD VI+V
Sbjct: 94 VRTTR-RTIPFLFVRGDGVILV 114
>gi|194910032|ref|XP_001982061.1| GG11245 [Drosophila erecta]
gi|190656699|gb|EDV53931.1| GG11245 [Drosophila erecta]
Length = 176
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + +V + RN ++L GR+ AFD+H N+VL + E T + + ++
Sbjct: 18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNIVLGDAEETVTTVEIDEETYEEV 75
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 76 YKTAK-RTIPMLFVRGDGVILV 96
>gi|449446417|ref|XP_004140968.1| PREDICTED: LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like protein
LSm3-like [Cucumis sativus]
Length = 101
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQV--LINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 70
EEE PL ++ +S+ V L R++++L G++ A+D+H NM+L +V E T
Sbjct: 3 TEEESTVKEPLDLIRLSLDERIYVKSLXPLRSDRELRGKLHAYDQHLNMILGDVEESVTT 62
Query: 71 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ + ++ + ++ R + +F+RGD VI+V
Sbjct: 63 VEIDDETYEEIVRTSR-RTVPFLFVRGDGVILV 94
>gi|440801404|gb|ELR22424.1| LSM Smlike protein family member, putative [Acanthamoeba
castellanii str. Neff]
Length = 103
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + R ++L G++ A+D+H NMVL +V E T + + ++
Sbjct: 18 PLDLIRLSLDD--RIYVKLRGERELRGKLHAYDQHLNMVLGDVEETVTTVEMDEETDEEI 75
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K R + +F+RGD VI+V
Sbjct: 76 IKRRK-RTVEMLFVRGDGVILV 96
>gi|303288678|ref|XP_003063627.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454695|gb|EEH52000.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 95
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE+ PL ++ +S+ + +V + R ++++ G++ A+D+H NM+L +V E T +
Sbjct: 3 EEDTTVKEPLDLIRLSL--DERVYVKLRGDREIRGKLHAYDQHLNMILGDVEETITTVEI 60
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ + K R + +F+RGD+V +V
Sbjct: 61 DDETYEEIVKTTK-RAVRYLFVRGDAVTLV 89
>gi|110671432|gb|ABG81967.1| putative U6 snRNA-associated Sm-like protein LSm3 [Diaphorina
citri]
Length = 101
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + +V + RN + L G++ A+D+H NMVL +V E T + + ++
Sbjct: 14 PLDLIRLSL--DERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEI 71
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 72 YKTTK-RSIPMLFVRGDGVILV 92
>gi|167518686|ref|XP_001743683.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777645|gb|EDQ91261.1| predicted protein [Monosiga brevicollis MX1]
Length = 93
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S++ +VL+ R +++L G + A+D+H NMVL NV E + + ++
Sbjct: 9 PLDLVRLSLEE--KVLVKMRGDRQLEGTLHAYDQHMNMVLSNVVETLATVDVDDETGEEL 66
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K R + +++RGD VI+V
Sbjct: 67 VKTAK-RVLPMLYVRGDGVILV 87
>gi|330796969|ref|XP_003286536.1| hypothetical protein DICPUDRAFT_30992 [Dictyostelium purpureum]
gi|325083517|gb|EGC36968.1| hypothetical protein DICPUDRAFT_30992 [Dictyostelium purpureum]
Length = 97
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + R +++L G++ A+D+H NM+L +V E + K + ++
Sbjct: 12 PLDLIRLSL--DERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEI 69
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ N R I +F+RGD VI++
Sbjct: 70 IR-NIKRNIKMLFIRGDGVILI 90
>gi|365991154|ref|XP_003672406.1| hypothetical protein NDAI_0J02710 [Naumovozyma dairenensis CBS 421]
gi|343771181|emb|CCD27163.1| hypothetical protein NDAI_0J02710 [Naumovozyma dairenensis CBS 421]
Length = 85
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L +++ + QV + R + L+G ++AFD HCN+VL + E EL G +
Sbjct: 6 PLDLLKLNL--DEQVYVKLRGARSLVGTLQAFDSHCNIVLSDAIETIYELDDEGDLQ--- 60
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ +R +F+RGD+V ++
Sbjct: 61 ---SVERNSEMIFVRGDTVTLI 79
>gi|453087554|gb|EMF15595.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 95
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 1 MSSRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
M+ P DN +E PL ++ +S+ N V + R +++L GR+ A+D HCN+V
Sbjct: 1 MADSPENGDNPVSE-------PLDLVRLSL--NETVFVKLRGDRELAGRLHAYDSHCNLV 51
Query: 61 LENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
L +V E + +A+ + +F+RGDSV+++
Sbjct: 52 LGDVTETVYVWDDEDEDNVRAVKKQSE----MLFVRGDSVVLI 90
>gi|387593780|gb|EIJ88804.1| hypothetical protein NEQG_00623 [Nematocida parisii ERTm3]
gi|387595086|gb|EIJ92712.1| hypothetical protein NEPG_02403 [Nematocida parisii ERTm1]
Length = 91
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 45/74 (60%)
Query: 30 VKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRF 89
+K+ +V + + N++++G + D+H N++L + E T+LP KGKK+ + R
Sbjct: 14 LKSGDKVCVTVKGNREVVGTMELTDKHMNVLLRDAVETRTQLPSMLKGKKRQIKKVFTRT 73
Query: 90 ISKMFLRGDSVIIV 103
+ +F+RG++VI +
Sbjct: 74 LGNVFIRGETVIAI 87
>gi|330918430|ref|XP_003298219.1| hypothetical protein PTT_08854 [Pyrenophora teres f. teres 0-1]
gi|311328701|gb|EFQ93672.1| hypothetical protein PTT_08854 [Pyrenophora teres f. teres 0-1]
Length = 96
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELP 72
EE+E PL ++ + + + V++ R +++L GR+ A+D HCN+VL +V E ++
Sbjct: 2 EEKEETNEPLDLVRLCI--DEVVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYMAEE 59
Query: 73 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ + + V K + +F+RGDSV+++
Sbjct: 60 EDDDQEPRVRTVKKQSEM--LFVRGDSVVLI 88
>gi|412991162|emb|CCO16007.1| predicted protein [Bathycoccus prasinos]
Length = 246
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 14/97 (14%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLG----RVRAFDRHCNMVLENVREMWTELPK--- 73
GPLS+L ++ +V I RN + + G + AFD++ N V ++ E ++ +
Sbjct: 115 GPLSLLYRALHEKKRVKIVTRNERGVRGCMECNISAFDKYFNFVAHDIEERYSVRVRKEK 174
Query: 74 ---TGKGKKKA----LPVNKDRFISKMFLRGDSVIIV 103
GKG+ K + ++R +S+MFLRG+SV++V
Sbjct: 175 EYVNGKGETKTRRRRVIEQRERKVSQMFLRGESVVLV 211
>gi|111226776|ref|XP_001134590.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|121962505|sp|Q1ZXK3.1|LSM3_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm3
gi|90970763|gb|EAS66906.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 97
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + R +++L G++ A+D+H NM+L +V E + K + ++
Sbjct: 12 PLDLIRLSL--DERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEI 69
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ N R I +F+RGD VI++
Sbjct: 70 IR-NIKRNIKMLFVRGDGVILI 90
>gi|353234582|emb|CCA66606.1| probable LSM3-U6 snRNA-associated Sm-like protein [Piriformospora
indica DSM 11827]
Length = 94
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
P ++ +S+ + +V++ R +++L G + A+D H NM+L +V E + +G K +
Sbjct: 10 PFDLIRLSL--SERVMVKLRGDRQLSGVLHAYDGHMNMILSDVEETVMIVDPVPEGVKPS 67
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ V K R I +++RGD VI+V
Sbjct: 68 IRVAK-RQIEMLYVRGDGVILV 88
>gi|363748022|ref|XP_003644229.1| hypothetical protein Ecym_1162 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887861|gb|AET37412.1| hypothetical protein Ecym_1162 [Eremothecium cymbalariae
DBVPG#7215]
Length = 83
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 17/91 (18%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L +++ + +V + R +KL G ++AFD HCN+VL + E EL
Sbjct: 5 PLDLLRLNL--DEKVYVKLRGARKLTGTLQAFDSHCNIVLSDAEETIYELVD-------- 54
Query: 82 LPVNKDRFISK----MFLRGDSVIIVLRNPK 108
RF +K +F+RGDSV +V P+
Sbjct: 55 ---GNLRFETKTSEMIFVRGDSVTLVTAQPE 82
>gi|312074108|ref|XP_003139822.1| U6 snRNA-associated Sm-like protein LSm3 [Loa loa]
Length = 136
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN++++ GR+ AFD+H NM+L V E T + + ++
Sbjct: 51 PLDLIRLSL--DERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVELDEENFEEM 108
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD++I+V
Sbjct: 109 HKQTK-RQIPMLFVRGDAIILV 129
>gi|345571011|gb|EGX53826.1| hypothetical protein AOL_s00004g485 [Arthrobotrys oligospora ATCC
24927]
Length = 93
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL V E + + +
Sbjct: 14 PLDLVRLSL--DEVVFVKLRGDRELRGRLHAYDSHCNLVLGEVEETIYVVDEDDDDTIRT 71
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ N + +F+RGDSV+I+
Sbjct: 72 VKKNSE----MLFVRGDSVVII 89
>gi|328872794|gb|EGG21161.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 97
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + R +++L G++ A+D+H NM+L +V E + K + ++
Sbjct: 12 PLDLIRLSL--DERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIRVVEKDEETDEEI 69
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K R I +F+RGD VI++
Sbjct: 70 VKSIK-RKIKMLFVRGDGVILI 90
>gi|356534803|ref|XP_003535941.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm3-like
isoform 1 [Glycine max]
Length = 97
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 72
+EEE PL+++ +S+ + ++ + R++++L G++ A+D+H N+VL +V E+ T +
Sbjct: 3 SEEESAVKEPLNLIWLSL--DERIYVKLRSDRELRGKLHAYDQHLNIVLGDVEEIVTTVE 60
Query: 73 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
L K R + +F+RGD VI+V
Sbjct: 61 IDDLLFSFLLQTTK-RTVPFLFVRGDGVILV 90
>gi|290462981|gb|ADD24538.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus salmonis]
Length = 105
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN ++L GR+ A+D++ NM+L V E T + + ++
Sbjct: 19 PLDLIRLSL--DERIYVKMRNERELKGRLNAYDQYLNMILGEVEETVTSIEIDEETYEEV 76
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 77 YRTTK-RNIPMLFVRGDGVILV 97
>gi|170588931|ref|XP_001899227.1| U6 snRNA-associated Sm-like protein LSm3 [Brugia malayi]
gi|158593440|gb|EDP32035.1| U6 snRNA-associated Sm-like protein LSm3, putative [Brugia malayi]
Length = 136
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN++++ GR+ AFD+H NM+L V E T + + ++
Sbjct: 51 PLDLIRLSL--DERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVELDEENFEEM 108
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD++I+V
Sbjct: 109 HKQTK-RQIPMLFVRGDAIILV 129
>gi|412991245|emb|CCO16090.1| U6 snRNA-associated Sm-like protein LSm3 [Bathycoccus prasinos]
Length = 114
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + +V + RN+++L G++ ++D+H NM+L V E+ T + ++
Sbjct: 29 PLDLVRLSL--DERVYVKLRNDRELRGKLHSYDQHLNMLLGEVEEITTIREVDEETYEEI 86
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ NK R + +F+RGD+V ++
Sbjct: 87 IKSNK-RSVPYLFVRGDAVTLI 107
>gi|402086284|gb|EJT81182.1| hypothetical protein GGTG_01166 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 95
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
V + R +++L GR+ A+D HCN+VL +V E + + K + R + +F+
Sbjct: 24 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETHYMQDEEDEADLKTVS----RKLEMLFV 79
Query: 96 RGDSVIIV 103
RGDSV+++
Sbjct: 80 RGDSVVLI 87
>gi|50421915|ref|XP_459516.1| DEHA2E04510p [Debaryomyces hansenii CBS767]
gi|49655184|emb|CAG87742.1| DEHA2E04510p [Debaryomyces hansenii CBS767]
Length = 88
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 8/68 (11%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
VL+ R +++ G+++ +D HCNM+L + E ++P +G++ PV K+ +F+
Sbjct: 25 VLVKLRGAREMKGKLQGYDSHCNMILSDAVEYIYDVP---EGQE---PVTKN--TDMVFV 76
Query: 96 RGDSVIIV 103
RGDSVI++
Sbjct: 77 RGDSVILI 84
>gi|443924030|gb|ELU43109.1| hypothetical protein AG1IA_02870 [Rhizoctonia solani AG-1 IA]
Length = 50
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 26/36 (72%), Gaps = 4/36 (11%)
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVII 102
MWTE K GK VNKDRFISKMFLRGDSVI+
Sbjct: 1 MWTETQKGKNGK----TVNKDRFISKMFLRGDSVIL 32
>gi|345787463|ref|XP_003432927.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Canis
lupus familiaris]
Length = 102
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 6 MEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 65
M++ N EE PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V
Sbjct: 5 MDQQQTTNTVEE----PLDLIRLSL--DERIYVKLRNDRELRGRLHAYDQHLNMILGDVE 58
Query: 66 EMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
E T + + ++ K R I +F+ GD V++V
Sbjct: 59 ETVTTIEIDEETYEEIYKSTK-RNIPMLFVWGDCVVLV 95
>gi|259489765|tpe|CBF90306.1| TPA: U6 small nuclear ribonucleoprotein (Lsm3), putative
(AFU_orthologue; AFUA_5G12570) [Aspergillus nidulans
FGSC A4]
Length = 96
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E + + ++
Sbjct: 15 PLDLVRLSL--DEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEQEHI 72
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K +F+RGDSV+++
Sbjct: 73 RTIKKQE--EMLFVRGDSVVLI 92
>gi|221053504|ref|XP_002258126.1| ribonucleoprotein [Plasmodium knowlesi strain H]
gi|193807959|emb|CAQ38663.1| ribonucleoprotein, putative [Plasmodium knowlesi strain H]
Length = 91
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 9/84 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW--TELPKTGKGKK 79
PL + ++++ +V + C+ ++++ G++ A+D H NM+L N RE + T + + K
Sbjct: 10 PLDYIRLNMEE--EVFLKCKGDREIRGKLDAYDNHLNMILSNARETYKQTVMENDEESVK 67
Query: 80 KALPVNKDRFISKMFLRGDSVIIV 103
K +R + +F+RGDS+I+V
Sbjct: 68 KI-----ERNLDMVFVRGDSIILV 86
>gi|350416213|ref|XP_003490876.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm11-like [Bombus
impatiens]
Length = 223
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 25/110 (22%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRA----FDRHCNMVLENVREMWTE------ 70
GPL +L +++ T+V + RN + + G V A FD+H N+ LE+ E+WT
Sbjct: 112 GPLGMLHGYMESRTRVKVYTRNARGIRGHVEAYVAAFDKHWNLALEDCFEVWTRKVKRKA 171
Query: 71 ----LPKTGKGKKKALP---VNK--------DRFISKMFLRGDSVIIVLR 105
P K K+ P V K +R + +M LRG+ V I+++
Sbjct: 172 PALGAPSGVKRKEDTAPKVVVKKIEGKEETLERHVPQMLLRGEQVAIIVK 221
>gi|367012788|ref|XP_003680894.1| hypothetical protein TDEL_0D00990 [Torulaspora delbrueckii]
gi|359748554|emb|CCE91683.1| hypothetical protein TDEL_0D00990 [Torulaspora delbrueckii]
Length = 85
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L +++ + +V + R ++L+G ++AFD HCN+VL + E +L G+ K+
Sbjct: 6 PLDLLKLNL--DERVYVKLRGARELIGTLQAFDSHCNIVLSDAVETIYQLE---SGELKS 60
Query: 82 LPVNKDRFISKMFLRGDSVIIVLRNP 107
N + +F+RGDSV ++ P
Sbjct: 61 TEKNSEM----IFVRGDSVTLITTPP 82
>gi|451997874|gb|EMD90339.1| hypothetical protein COCHEDRAFT_1139604 [Cochliobolus
heterostrophus C5]
Length = 96
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 53/92 (57%), Gaps = 6/92 (6%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTEL 71
+E+EE N PL ++ + + + V++ R +++L GR+ A+D HCN+VL +V E ++
Sbjct: 2 DEKEETNE-PLDLVRLCI--DEIVILKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIAE 58
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ + V K +F+RGDSV+++
Sbjct: 59 EDDDDQEPRVRTVKKQS--EMLFIRGDSVVLI 88
>gi|169614602|ref|XP_001800717.1| hypothetical protein SNOG_10447 [Phaeosphaeria nodorum SN15]
gi|160702780|gb|EAT81841.2| hypothetical protein SNOG_10447 [Phaeosphaeria nodorum SN15]
Length = 96
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELP 72
EE+E PL ++ + + + V++ R +++L GR+ A+D HCN+VL +V E ++
Sbjct: 2 EEKEETNEPLDLVRLCI--DEVVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIFVAEE 59
Query: 73 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ + + V K +F+RGDSV+++
Sbjct: 60 EEEDQEPRVRTVKKQS--EMLFVRGDSVVLI 88
>gi|429964879|gb|ELA46877.1| hypothetical protein VCUG_01651 [Vavraia culicis 'floridensis']
Length = 92
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++N R+N+KL G VR D H NM+L +V E+ K KG KK +R I
Sbjct: 20 NCPCIVNLRSNRKLCGIVRVIDHHFNMILTDVTEIRKTKSK-NKGVKKREGTTVERKIKC 78
Query: 93 MFLRGDSVIIV 103
+ LRGD+VI V
Sbjct: 79 LVLRGDNVISV 89
>gi|255087196|ref|XP_002505521.1| predicted protein [Micromonas sp. RCC299]
gi|226520791|gb|ACO66779.1| predicted protein [Micromonas sp. RCC299]
Length = 95
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE+ PL ++ +S+ + +V + R +++ G++ A+D+H NM+L +V E T +
Sbjct: 3 EEDTTVKEPLDLIRLSL--DERVYVKLRGEREIRGKLHAYDQHLNMILGDVEETITTVEI 60
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ + K R + +F+RGD+V +V
Sbjct: 61 DDETYEEIIKTTK-RAVRFLFVRGDAVTLV 89
>gi|145249892|ref|XP_001401285.1| U6 snRNA-associated Sm-like protein LSm3 [Aspergillus niger CBS
513.88]
gi|134081970|emb|CAK46655.1| unnamed protein product [Aspergillus niger]
Length = 96
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E + + ++
Sbjct: 15 PLDLVRLSL--DEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEQETL 72
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K +F+RGDSV+++
Sbjct: 73 RTIKKQE--EMLFVRGDSVVLI 92
>gi|389629744|ref|XP_003712525.1| hypothetical protein MGG_16841 [Magnaporthe oryzae 70-15]
gi|351644857|gb|EHA52718.1| hypothetical protein MGG_16841 [Magnaporthe oryzae 70-15]
gi|440488450|gb|ELQ68177.1| hypothetical protein OOW_P131scaffold00266g63 [Magnaporthe oryzae
P131]
Length = 95
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
V + R +++L GR+ A+D HCN+VL +V E + + + K + R + +F+
Sbjct: 24 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETHYIQDEDDESELKTVS----RKLEMLFV 79
Query: 96 RGDSVIIV 103
RGDSV+++
Sbjct: 80 RGDSVVMI 87
>gi|395853650|ref|XP_003799317.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Otolemur
garnettii]
Length = 102
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ N ++ + RN+++L R+ A+D+H NM+ +V E T + + ++
Sbjct: 17 PLDLIRLSL--NKRIYVKMRNDRELRSRLHAYDQHLNMIYGDVEETVTTIEIDEETYEEI 74
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gi|389582457|dbj|GAB65195.1| U6 snRNA-associated Sm-like protein LSm3 [Plasmodium cynomolgi
strain B]
Length = 91
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 19/89 (21%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL + ++++ +V + C+ ++++ G++ A+D H NM+L N RE + K++
Sbjct: 10 PLDYIRLNMEE--EVFLKCKGDREIRGKLDAYDNHLNMILSNARETY----------KQS 57
Query: 82 LPVNKDRFISKM-------FLRGDSVIIV 103
+ N + I K+ F+RGDS+I+V
Sbjct: 58 VTENDEESIKKIERNLDMVFVRGDSIILV 86
>gi|340711443|ref|XP_003394285.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm11-like [Bombus
terrestris]
Length = 223
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 25/110 (22%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRA----FDRHCNMVLENVREMWTE------ 70
GPL +L +++ T+V + RN + + G V A FD+H N+ LE+ E+WT
Sbjct: 112 GPLGMLHGYMESRTRVKVYTRNARGIRGHVEAYVAAFDKHWNLALEDCFEVWTRKVKRKA 171
Query: 71 ----LPKTGKGKKKALP---VNK--------DRFISKMFLRGDSVIIVLR 105
P K K+ P V K +R + +M LRG+ V I+++
Sbjct: 172 PALGAPSGVKRKEDTAPKVVVKKIEGKEETLERHVPQMLLRGEQVAIIVK 221
>gi|156544183|ref|XP_001606444.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm11-like [Nasonia
vitripennis]
Length = 225
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 25/110 (22%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRA----FDRHCNMVLENVREMWT-----EL 71
GPL VL ++N +V + RN + G V A FDRH N+ LE+ E+WT +
Sbjct: 114 GPLGVLFQYMENRIRVKVYTRNANGIRGHVEAYVAAFDRHWNLALEDCLELWTRKVKRKA 173
Query: 72 PKTGKGKKKALPVNK----------------DRFISKMFLRGDSVIIVLR 105
P G + L + +R + ++ LRG+ V ++ +
Sbjct: 174 PALGDPRPAELAPDNVPRVIVKEKQGKFETLERHVPQLLLRGEQVALIAK 223
>gi|451847192|gb|EMD60500.1| hypothetical protein COCSADRAFT_40145 [Cochliobolus sativus ND90Pr]
Length = 96
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 72
+E+EE N PL ++ + + + V++ R +++L GR+ A+D HCN+VL +V E
Sbjct: 2 DEKEETNE-PLDLVRLCI--DEIVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYLAE 58
Query: 73 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ + K + +F+RGDSV+++
Sbjct: 59 EDDDDQEPRVRTIKKQS-EMLFIRGDSVVLI 88
>gi|452987088|gb|EME86844.1| hypothetical protein MYCFIDRAFT_49442 [Pseudocercospora fijiensis
CIRAD86]
Length = 94
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ N V + R +++L GR+ A+D HCN+VL +V E + + + +
Sbjct: 15 PLDLVRLSL--NETVFVKLRGDRELQGRLHAYDSHCNLVLGDVTETVYLVDEEDEDNVRT 72
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ + +F+RGDSV+++
Sbjct: 73 VKKQSE----MLFVRGDSVVLI 90
>gi|410080239|ref|XP_003957700.1| hypothetical protein KAFR_0E04140 [Kazachstania africana CBS 2517]
gi|372464286|emb|CCF58565.1| hypothetical protein KAFR_0E04140 [Kazachstania africana CBS 2517]
Length = 85
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L +++ + V + R + L G ++AFD HCN+VL + E EL G+
Sbjct: 5 PLDLLKLNL--DETVYVKLRGARALTGTLQAFDSHCNIVLSDAVETIYELDGNGELS--- 59
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+K++ +F+RGDSV ++
Sbjct: 60 ---SKEKKSEMIFVRGDSVTLI 78
>gi|159118879|ref|XP_001709658.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
ATCC 50803]
gi|157437775|gb|EDO81984.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
ATCC 50803]
Length = 126
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 18/97 (18%)
Query: 9 DNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 68
D V E EF + PL +L S+++ VL+ +NN + G + +FD H N++L N E
Sbjct: 41 DRVTPEYTEF-SNPLYLLKTSLEDRVSVLL--QNNSSITGLLASFDEHMNLILINAEETG 97
Query: 69 TELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 105
L +RF + +RGDS+I V R
Sbjct: 98 HSL---------------NRFFPLLVIRGDSIIFVTR 119
>gi|323456789|gb|EGB12655.1| hypothetical protein AURANDRAFT_60633 [Aureococcus anophagefferens]
Length = 779
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 21 GPLSVLMMSVKNNTQVLINCRN----NKKLLGRVRAFDRHCNMVLENVREMWTELPKTGK 76
GP VL ++++ V + R +G ++AFDRH N+VL + E T +P +
Sbjct: 154 GPHGVLWRALRDRAAVKVVLRRVNCIRGSCVGLLKAFDRHMNLVLVDAAE--TTVPPM-R 210
Query: 77 GKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
+A PV RF+ ++ +RGD+V++V R P
Sbjct: 211 NPDRARPVT--RFLKQVLIRGDNVVLVCRAP 239
>gi|328777216|ref|XP_001120196.2| PREDICTED: u7 snRNA-associated Sm-like protein LSm11-like [Apis
mellifera]
Length = 224
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 32/114 (28%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRA----FDRHCNMVLENVREMWTELPKTGK 76
GPL +L ++N T++ + RN + + G V A FD+H N+ LE+ E+WT + K
Sbjct: 112 GPLGMLHEYMENRTRIKVYTRNARGIRGHVEAYVAAFDKHWNLALEDCFEIWT---RKVK 168
Query: 77 GKKKALPVNKD-------------------------RFISKMFLRGDSVIIVLR 105
K AL + D R + +M LRG+ V I+++
Sbjct: 169 RKAPALGIPSDVSMMDEETAPKVIVRKIEGKMETLERHVPQMLLRGEQVAIIVK 222
>gi|295670537|ref|XP_002795816.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284901|gb|EEH40467.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 99
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E + + ++
Sbjct: 15 PLDLVRLSL--DEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVEEDESEREMI 72
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K +F+RGDSV+++
Sbjct: 73 KTIKKQE--EMLFVRGDSVVLI 92
>gi|154283195|ref|XP_001542393.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410573|gb|EDN05961.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 98
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E + + ++
Sbjct: 15 PLDLVRLSL--DEVVFVKLRGDRELRGRLHAYDSHCNLVLGDVEETIYIVEEDESEQEVI 72
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K +F+RGDSV+++
Sbjct: 73 KTIKKQE--EMLFVRGDSVVLI 92
>gi|308161048|gb|EFO63510.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
P15]
Length = 132
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 18/97 (18%)
Query: 9 DNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 68
D V E EF+ PL +L S+++ VL+ +NN + G + +FD H N++L N E
Sbjct: 47 DRVTPEYTEFSN-PLYLLKTSLEDRISVLL--QNNSSITGLLASFDEHMNLILINAEETG 103
Query: 69 TELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 105
L +RF + +RGDS+I V R
Sbjct: 104 HSL---------------NRFFPLLVIRGDSIIFVTR 125
>gi|380030070|ref|XP_003698681.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm11-like [Apis
florea]
Length = 224
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 34/115 (29%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRA----FDRHCNMVLENVREMWT-----EL 71
GPL +L ++N T++ + RN + + G V A FD+H N+ LE+ E+WT +
Sbjct: 112 GPLGMLHEYMENRTRIKVYTRNARGIRGHVEAYVAAFDKHWNLALEDCFEIWTRKVKRKA 171
Query: 72 PKTG---------------------KGKKKALPVNKDRFISKMFLRGDSVIIVLR 105
P G +GK + L +R + +M LRG+ V I+++
Sbjct: 172 PALGIPSGVNTIDEETAPKVIVKKIEGKMETL----ERHVPQMLLRGEQVAIIVK 222
>gi|225561720|gb|EEH10000.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus G186AR]
gi|240275325|gb|EER38839.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus H143]
gi|325091160|gb|EGC44470.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus H88]
Length = 98
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E + + ++
Sbjct: 15 PLDLVRLSL--DEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVEEDESEQEVI 72
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K +F+RGDSV+++
Sbjct: 73 KTIKKQE--EMLFVRGDSVVLI 92
>gi|398407923|ref|XP_003855427.1| hypothetical protein MYCGRDRAFT_84746 [Zymoseptoria tritici IPO323]
gi|339475311|gb|EGP90403.1| hypothetical protein MYCGRDRAFT_84746 [Zymoseptoria tritici IPO323]
Length = 94
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ N V + R +++L GR+ A+D HCN+VL +V E + + + +
Sbjct: 15 PLDLVRLSL--NEVVFVKLRGDRELQGRLHAYDSHCNLVLGDVTETVYVVDEEDEDNVRT 72
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ + +F+RGDSV+++
Sbjct: 73 VKKQSE----MLFVRGDSVVLI 90
>gi|400599588|gb|EJP67285.1| U6 snRNA-associated Sm-like protein LSm3 [Beauveria bassiana ARSEF
2860]
Length = 95
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N V + R +++L G++ A+D HCN+VL V E + + + + K++ R
Sbjct: 23 NEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYGVEEDDEEEAKSVS----RKSEM 78
Query: 93 MFLRGDSVIIV 103
+F+RGDSV+++
Sbjct: 79 LFVRGDSVVLI 89
>gi|392576848|gb|EIW69978.1| hypothetical protein TREMEDRAFT_68409 [Tremella mesenterica DSM
1558]
Length = 95
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ +V I R ++ L G + A+D H N+VL V E + G+ A
Sbjct: 12 PLDLVKLSL--GERVFIKLRGDRTLTGNLHAYDAHMNLVLSQVEE-NIHIVDVGEDGTAA 68
Query: 82 LPVNKDRFISKMFLRGDSVII 102
P + R +F+RGDSVI+
Sbjct: 69 PPRIERRGFEMLFIRGDSVIL 89
>gi|327356944|gb|EGE85801.1| GTP-binding protein AGP-1 [Ajellomyces dermatitidis ATCC 18188]
Length = 98
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E + + ++
Sbjct: 15 PLDLVRLSL--DEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVEEDESEQEII 72
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K +F+RGDSV+++
Sbjct: 73 KTIKKQE--EMLFVRGDSVVLI 92
>gi|114051632|ref|NP_001040418.1| LSM Sm-like protein family member [Bombyx mori]
gi|95102812|gb|ABF51347.1| LSM Sm-like protein family member [Bombyx mori]
Length = 102
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
P ++ +S+ + ++ + RN ++L G++ A+D+H NMVL + E T + + ++
Sbjct: 16 PWDLIRLSL--DERIYVKMRNERELRGKLHAYDQHLNMVLGDAEETITTVEIDEETYEEV 73
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD VI+V
Sbjct: 74 YRTTK-RTIPMLFVRGDGVILV 94
>gi|392568264|gb|EIW61438.1| like-Sm ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 97
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKK 79
P ++ +S+ +V + R +++L G + A+D H N++L +V E M + P+ G +
Sbjct: 11 PFDLIRLSLSE--RVFVKLRGDRELTGILHAYDGHMNLILSDVEETIMIVDQPEGGPEEH 68
Query: 80 KALPVNKDRFISKMFLRGDSVIIV 103
+ + K R + +F+RGD VI+V
Sbjct: 69 STVNIAK-RKMDMLFVRGDGVILV 91
>gi|358374818|dbj|GAA91407.1| U6 small nuclear ribonucleoprotein [Aspergillus kawachii IFO 4308]
Length = 96
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E + + ++
Sbjct: 15 PLDLVRLSL--DEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEQEIL 72
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K +F+RGDSV+++
Sbjct: 73 RTIKKQE--EMLFVRGDSVVLI 92
>gi|355561171|gb|EHH17857.1| hypothetical protein EGK_14338 [Macaca mulatta]
Length = 102
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D++ NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIDVKMRNDQELRGRLHAYDQYSNMILGDVEETVTTIEIDEETYEEI 74
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD V++V
Sbjct: 75 YKSMK-RNIPMLFVRGDGVVLV 95
>gi|440294421|gb|ELP87438.1| snrnp sm protein, putative [Entamoeba invadens IP1]
Length = 79
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 17/82 (20%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
P+ ++ +S+ + VL+ R N++L G++RAFD+H N+VL TE+ +T +
Sbjct: 9 PIDLVKLSL--DEVVLVKLRGNRQLKGKLRAFDQHLNLVL-------TEVTETYNSVSRD 59
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
PV +++RGD V+IV
Sbjct: 60 FPV--------LYIRGDLVVIV 73
>gi|109068881|ref|XP_001099845.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3 [Macaca
mulatta]
gi|355748132|gb|EHH52629.1| hypothetical protein EGM_13096 [Macaca fascicularis]
Length = 102
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D++ NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIDVKMRNDQELRGRLHAYDQYSNMILGDVEETVTTIEIDEETYEEI 74
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F RGD V++V
Sbjct: 75 YKSMK-RNIPMLFFRGDGVVLV 95
>gi|388580102|gb|EIM20419.1| like-Sm ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 89
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 17/89 (19%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW-------TELPKT 74
PL ++ +S+ N Q+ + R +++L+G + A+D H N++L NV E T L T
Sbjct: 8 PLDLVRLSL--NEQIKVKLRGDRELIGVLHAYDSHMNLILGNVDEFVTVVDVDSTTLEST 65
Query: 75 GKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ K+++P+ +++RGD VI++
Sbjct: 66 TRFVKRSMPM--------LYIRGDGVILI 86
>gi|156089511|ref|XP_001612162.1| LSM domain containing protein [Babesia bovis]
gi|154799416|gb|EDO08594.1| LSM domain containing protein [Babesia bovis]
Length = 89
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 53/84 (63%), Gaps = 7/84 (8%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT--ELPKTGKGKK 79
P+ V+ +++ + +V + C+ ++++G++ A+D HCNM+L + E +T EL T +
Sbjct: 5 PMDVIRVNL--DERVYLKCKGGREIVGQLHAYDEHCNMLLSDAIETFTSVELDPTTNQEV 62
Query: 80 KALPVNKDRFISKMFLRGDSVIIV 103
+ +KD + +F+RGD++I++
Sbjct: 63 TTI-TSKDSGV--VFVRGDALILL 83
>gi|452845306|gb|EME47239.1| hypothetical protein DOTSEDRAFT_124864 [Dothistroma septosporum
NZE10]
Length = 95
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ N V + R +++L GR+ A+D HCN+VL +V E + + + ++
Sbjct: 15 PLDLVRLSL--NEIVFVKLRGDRELQGRLHAYDSHCNLVLGDVSETVYVVDEEDE-QENV 71
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
V K +F+RGDSV+++
Sbjct: 72 RTVKKQS--EMLFVRGDSVVLI 91
>gi|440637312|gb|ELR07231.1| hypothetical protein GMDG_02458 [Geomyces destructans 20631-21]
Length = 98
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E + + + +
Sbjct: 15 PLDLVRLSL--DEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVVETVYVVDEDDEDGETL 72
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
++K +F+RGDSV+++
Sbjct: 73 KTIHKKS--EMLFVRGDSVVLI 92
>gi|209879574|ref|XP_002141227.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556833|gb|EEA06878.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 106
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP-KTGKGKKK 80
P+ ++ +S+ + +V + CR +++L G + A+D H NMVL NV+E ++ G++
Sbjct: 17 PIDLIRLSL--DEKVNVKCRGDRELEGILYAYDPHMNMVLGNVKETSQKITIDEVTGEES 74
Query: 81 ALPVNKDRFISKMFLRGDSVIIV 103
+ V R I +FLRGD VI+V
Sbjct: 75 TMKVT--RRIEMLFLRGDLVILV 95
>gi|383848568|ref|XP_003699921.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm11-like
[Megachile rotundata]
Length = 225
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 35/116 (30%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRA----FDRHCNMVLENVREMWT-----EL 71
GPL +L +++ T++ + RN + G V A FD+H N+ LE+ E+WT +
Sbjct: 112 GPLGMLYGYMESRTRIKVYTRNAYGIRGHVEAYVAAFDKHWNLALEDCFEVWTRKTKRKA 171
Query: 72 PKTG----------------------KGKKKALPVNKDRFISKMFLRGDSVIIVLR 105
P G +GKK+ L +R + +M LRG+ V I+++
Sbjct: 172 PARGGTQDVIVKQEDDAAPKVVVKKIEGKKETL----ERHVPQMLLRGEQVAIIVK 223
>gi|302755206|ref|XP_002961027.1| hypothetical protein SELMODRAFT_8958 [Selaginella moellendorffii]
gi|302767128|ref|XP_002966984.1| hypothetical protein SELMODRAFT_8957 [Selaginella moellendorffii]
gi|300164975|gb|EFJ31583.1| hypothetical protein SELMODRAFT_8957 [Selaginella moellendorffii]
gi|300171966|gb|EFJ38566.1| hypothetical protein SELMODRAFT_8958 [Selaginella moellendorffii]
Length = 94
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD-RFIS 91
N ++ + ++ ++L+G+ AFDRH N VL + E PK G GK++ +D R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNFVLGDTEEFRRLPPKKGAGKQQGGEEREDRRTLG 73
Query: 92 KMFLRGDSVI 101
+ LRG+ V+
Sbjct: 74 LILLRGEEVV 83
>gi|50303649|ref|XP_451766.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640898|emb|CAH02159.1| KLLA0B05203p [Kluyveromyces lactis]
Length = 83
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 9/82 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L +++ + +V + R+ ++L+G ++AFD HCN+VL + +E EL +G K
Sbjct: 5 PLDLLKLNL--DERVYVKLRDARELVGTLQAFDSHCNIVLSDSKETIYELV---EGDLK- 58
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+RF +F+RG V +V
Sbjct: 59 ---TTERFSEMIFVRGGLVALV 77
>gi|71030066|ref|XP_764675.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351631|gb|EAN32392.1| Sm protein, putative [Theileria parva]
Length = 84
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 69
+ + C+N ++L+GR++AFD HCNMVL V E T
Sbjct: 22 IYLKCKNGRELVGRLQAFDEHCNMVLSEVTETIT 55
>gi|367051210|ref|XP_003655984.1| hypothetical protein THITE_2146609 [Thielavia terrestris NRRL 8126]
gi|347003248|gb|AEO69648.1| hypothetical protein THITE_2146609 [Thielavia terrestris NRRL 8126]
Length = 98
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
V + R +++L GR+ A+D HCN+VL +V E + + + K V+K +F+
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVDEDDDEEVKLQTVSKKS--EMLFV 83
Query: 96 RGDSVIIV 103
RGDSV+++
Sbjct: 84 RGDSVVLI 91
>gi|407927498|gb|EKG20390.1| hypothetical protein MPH_02316 [Macrophomina phaseolina MS6]
Length = 99
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
V + R +++L GR+ A+D HCN+VL +V E + + ++ V K +F+
Sbjct: 28 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDANEEEVVRTVKKQS--EMLFV 85
Query: 96 RGDSVIIV 103
RGDSV+++
Sbjct: 86 RGDSVVLI 93
>gi|255953441|ref|XP_002567473.1| Pc21g04270 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589184|emb|CAP95324.1| Pc21g04270 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 96
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ V + R +++L GR+ A+D HCN+VL +V E + + ++
Sbjct: 15 PLDLVRLSLDET--VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEEETL 72
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K +F+RGDSV+++
Sbjct: 73 RTIKKQE--EMLFVRGDSVVLI 92
>gi|425767040|gb|EKV05625.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Penicillium
digitatum Pd1]
gi|425780202|gb|EKV18219.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Penicillium
digitatum PHI26]
Length = 96
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ V + R +++L GR+ A+D HCN+VL +V E + + ++
Sbjct: 15 PLDLVRLSLDET--VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEEETL 72
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K +F+RGDSV+++
Sbjct: 73 RTIKKQE--EMLFVRGDSVVLI 92
>gi|241959048|ref|XP_002422243.1| U6 snRNA-associated Sm-like protein, putative [Candida dubliniensis
CD36]
gi|223645588|emb|CAX40247.1| U6 snRNA-associated Sm-like protein, putative [Candida dubliniensis
CD36]
Length = 96
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKAL-PVNKDRFISKMF 94
VL+ R ++L G+++ +D HCNMVL + +E + G + + P+ K + +F
Sbjct: 26 VLVKLRGARELKGKLQGYDSHCNMVLSDAQETIYTSNEGGDSEDSSKEPIVKKT--AMVF 83
Query: 95 LRGDSVIIV 103
+RGDSVI++
Sbjct: 84 VRGDSVILI 92
>gi|328769008|gb|EGF79053.1| hypothetical protein BATDEDRAFT_90185 [Batrachochytrium
dendrobatidis JAM81]
Length = 105
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 3 SRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 62
S P +E EE T PL ++ +S+ + ++ + R +++L G++ A+D+H NMVL
Sbjct: 2 SDPEQEQRHMAEETVQTTEPLDLVRLSL--DERIYVKMRGDRELRGKLHAYDQHMNMVLG 59
Query: 63 NVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
V E T + +++ + + +F+RGD VI+V
Sbjct: 60 EVEESITVVHLDENEDEESSEIVTKNY-EMLFVRGDGVILV 99
>gi|344231234|gb|EGV63116.1| LSM-domain-containing protein [Candida tenuis ATCC 10573]
Length = 88
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 11/69 (15%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 94
VL+ R +++ G+++ +D HCNMVL + E ++ E +GK + +F
Sbjct: 25 VLVKLRGAREMKGKLQGYDSHCNMVLSDATEYIYAENQDKPQGKSTDM----------VF 74
Query: 95 LRGDSVIIV 103
+RGDSVI++
Sbjct: 75 IRGDSVILI 83
>gi|396485483|ref|XP_003842182.1| similar to U6 snRNA-associated Sm-like protein LSm3 [Leptosphaeria
maculans JN3]
gi|312218758|emb|CBX98703.1| similar to U6 snRNA-associated Sm-like protein LSm3 [Leptosphaeria
maculans JN3]
Length = 96
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTEL 71
+E+EE N PL ++ + + + V++ R +++L GR+ A+D HCN+VL +V E ++
Sbjct: 2 DEKEETNE-PLDLVRLCI--DEIVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIFVAD 58
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ + + V K +F+RGDSV+++
Sbjct: 59 EEEEDLEPRVRTVKKQS--EMLFVRGDSVVLI 88
>gi|320587366|gb|EFW99846.1| u6 small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 99
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 50/96 (52%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 72
+E ++ P + ++ + + V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 3 DEADDMAPAPEPLDLVKLLLDEPVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYITD 62
Query: 73 KTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 108
+ + + + R +F+RGDSV+++ P+
Sbjct: 63 EDDEDESEQEVRTVSRKSEMLFVRGDSVVLISPVPQ 98
>gi|302696809|ref|XP_003038083.1| hypothetical protein SCHCODRAFT_102915 [Schizophyllum commune H4-8]
gi|300111780|gb|EFJ03181.1| hypothetical protein SCHCODRAFT_102915, partial [Schizophyllum
commune H4-8]
Length = 95
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 9 DNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE-- 66
D+ + +E F+ LS+ + +V + R +++L G + A+D H N++L +V E
Sbjct: 2 DSTSSIQEPFDLIRLSL-------SERVFVKLRGDRQLEGVLHAYDGHMNLILSDVEETI 54
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
M ++P+ + + V K R + +F+RGD VI+V
Sbjct: 55 MIVDVPEGAPESQGTVNVAK-RKMGMLFVRGDGVILV 90
>gi|432110929|gb|ELK34403.1| U6 snRNA-associated Sm-like protein LSm3 [Myotis davidii]
Length = 70
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 41 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 100
RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD V
Sbjct: 2 RNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGV 60
Query: 101 IIV 103
++V
Sbjct: 61 VLV 63
>gi|212533023|ref|XP_002146668.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
marneffei ATCC 18224]
gi|210072032|gb|EEA26121.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
marneffei ATCC 18224]
Length = 96
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E + + ++
Sbjct: 14 PLDLVRLSL--DEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEEETV 71
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K +F+RGDSV+++
Sbjct: 72 KTIRKQE--EMLFVRGDSVVLI 91
>gi|242777144|ref|XP_002478974.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
stipitatus ATCC 10500]
gi|218722593|gb|EED22011.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
stipitatus ATCC 10500]
Length = 96
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E + + ++
Sbjct: 14 PLDLVRLSL--DEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEEETV 71
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K +F+RGDSV+++
Sbjct: 72 KTIRKQE--EMLFVRGDSVVLI 91
>gi|444705548|gb|ELW46970.1| U6 snRNA-associated Sm-like protein LSm3 [Tupaia chinensis]
Length = 70
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 41 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 100
RN+++L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD V
Sbjct: 2 RNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGV 60
Query: 101 IIV 103
++V
Sbjct: 61 VLV 63
>gi|115387369|ref|XP_001211190.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195274|gb|EAU36974.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 97
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E + ++
Sbjct: 16 PLDLVRLSL--DEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEDDENEEETI 73
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K +F+RGDSV+++
Sbjct: 74 RTIKKQE--EMLFVRGDSVVLI 93
>gi|307169174|gb|EFN61990.1| U7 snRNA-associated Sm-like protein LSm11 [Camponotus floridanus]
Length = 116
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 26/112 (23%)
Query: 19 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRA----FDRHCNMVLENVREMWTE---- 70
GPL +L ++N ++ + RN + + G V A FD+H N+ LE+ E+W+
Sbjct: 4 TIGPLGMLHGCMENKIRIRVYTRNARGIRGHVEAYVVAFDKHWNLALEDCYEVWSRKVKR 63
Query: 71 -----------------LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 105
+PKT K++ + +R + +M LRG+ V I+++
Sbjct: 64 KAPVLGADAVKVEAANGIPKTVIRKERKME-TLERHVPQMLLRGEQVAIIVK 114
>gi|238880144|gb|EEQ43782.1| hypothetical protein CAWG_02031 [Candida albicans WO-1]
Length = 96
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 94
VL+ R ++L G+++ +D HCNMVL + E ++T P+ K + +F
Sbjct: 26 VLVKLRGARELKGKLQGYDSHCNMVLSDAEETIYTSNEDDDSENTSEEPIVKKT--AMVF 83
Query: 95 LRGDSVIIV 103
+RGDSVI++
Sbjct: 84 VRGDSVILI 92
>gi|393228928|gb|EJD36561.1| LSM-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 121
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKK 79
P ++ +S+ N +V + R +++L G + A+D H NM++ +V E M ++P G
Sbjct: 11 PFDLIRLSL--NERVFVKLRGDRELTGVLHAYDGHMNMIMSDVEETIMIVDVPADGVLLP 68
Query: 80 KA--LPVNKDRFISKMFLRGDSVIIV 103
A + V K R + +F+RGD VI+V
Sbjct: 69 GAGSIKVAKRR-LEMLFVRGDGVILV 93
>gi|385805901|ref|YP_005842299.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
gi|383795764|gb|AFH42847.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
Length = 76
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 14/77 (18%)
Query: 27 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 86
++S VL+ + NK++ G+++++D H N+VLE+ E++ P +
Sbjct: 8 ILSSSMGQTVLVKLKGNKEVRGKLKSYDHHLNIVLEDAEELF--------------PDGQ 53
Query: 87 DRFISKMFLRGDSVIIV 103
R + + +RGD+VII+
Sbjct: 54 ARKLGTVIIRGDNVIII 70
>gi|254565075|ref|XP_002489648.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
gi|238029444|emb|CAY67367.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
Length = 84
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL+++ + + + +V + R ++++G++ A+D HCN+VL + E + + + + K +
Sbjct: 6 PLNMIKLCL--DEKVYVKLRGAREIVGKLHAYDNHCNLVLGDAVETISTVDENNELKTQT 63
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
KDR + ++LRGDSVI+V
Sbjct: 64 ----KDRPM--VYLRGDSVILV 79
>gi|326435095|gb|EGD80665.1| LSM domain-containing protein [Salpingoeca sp. ATCC 50818]
Length = 91
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + +V + R N+ L G++ A+D+H NMVL +V E T + + +
Sbjct: 8 PLDLIRLSL--DERVTVKMRGNRVLSGQLHAYDQHLNMVLSDVVETITT-SEIDEESYEE 64
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ +R + +++RGD VI+V
Sbjct: 65 IIKTTERKMPMLYVRGDGVILV 86
>gi|328350067|emb|CCA36467.1| U6 snRNA-associated Sm-like protein LSm6 [Komagataella pastoris CBS
7435]
Length = 199
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL+++ + + + +V + R ++++G++ A+D HCN+VL + E + + + + K +
Sbjct: 121 PLNMIKLCL--DEKVYVKLRGAREIVGKLHAYDNHCNLVLGDAVETISTVDENNELKTQT 178
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
KDR + ++LRGDSVI+V
Sbjct: 179 ----KDRPM--VYLRGDSVILV 194
>gi|426334164|ref|XP_004028631.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Gorilla gorilla gorilla]
Length = 55
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Query: 59 MVLENVREMWTELPKTGKGKKKAL---PVNKDRFISKMFLRGDSVI 101
MVL+NV+EM TE+PK KG K P NKDRFISK+FL DSVI
Sbjct: 1 MVLKNVKEMCTEVPKGDKGGKGKKKSKPANKDRFISKLFLSRDSVI 46
>gi|156097859|ref|XP_001614962.1| U6 snRNA-associated Sm-like protein LSm3 [Plasmodium vivax Sal-1]
gi|148803836|gb|EDL45235.1| U6 snRNA-associated Sm-like protein LSm3, putative [Plasmodium
vivax]
Length = 91
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 49/84 (58%), Gaps = 9/84 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE--LPKTGKGKK 79
PL + ++++ +V + C+ ++++ G++ A+D H NM+L N E + + + + K
Sbjct: 10 PLDYIRLNMEE--EVFLKCKGDREIRGKLDAYDNHLNMILSNAHETYKQSVVENDEESVK 67
Query: 80 KALPVNKDRFISKMFLRGDSVIIV 103
K +R + +F+RGDS+I+V
Sbjct: 68 KI-----ERNLDMVFVRGDSIILV 86
>gi|366997500|ref|XP_003678512.1| hypothetical protein NCAS_0J01950 [Naumovozyma castellii CBS 4309]
gi|342304384|emb|CCC72174.1| hypothetical protein NCAS_0J01950 [Naumovozyma castellii CBS 4309]
Length = 84
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L +++ + +V + R + L G ++AFD HCN+VL + E EL G K+
Sbjct: 6 PLDLLKLNL--DEKVYVKLRGARSLTGTLQAFDSHCNIVLSDAVETIYELE---DGDLKS 60
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+R +F+RGD+V ++
Sbjct: 61 ----TERQSEMIFVRGDTVTLI 78
>gi|45190730|ref|NP_984984.1| AER125Cp [Ashbya gossypii ATCC 10895]
gi|44983709|gb|AAS52808.1| AER125Cp [Ashbya gossypii ATCC 10895]
gi|374108207|gb|AEY97114.1| FAER125Cp [Ashbya gossypii FDAG1]
Length = 83
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 9/82 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L +++ + +V + R +KL G ++AFD HCN+VL + E +L G+ K
Sbjct: 5 PLDLLRLNL--DERVYVKLRGARKLSGTLQAFDSHCNIVLSDAEETIYQLI---DGELK- 58
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
++ + +F+RGDSV +V
Sbjct: 59 ---SETKSSEMVFVRGDSVTLV 77
>gi|71051464|gb|AAH14600.1| LOC645339 protein [Homo sapiens]
Length = 55
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Query: 59 MVLENVREMWTELPKTGKGKKKAL---PVNKDRFISKMFLRGDSVI 101
MVLENV+EM TE+PK G G K P NKD FISK+FL DSVI
Sbjct: 1 MVLENVKEMCTEVPKGGNGGKGKKKSKPANKDHFISKLFLCRDSVI 46
>gi|430813883|emb|CCJ28802.1| unnamed protein product [Pneumocystis jirovecii]
Length = 97
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 15/105 (14%)
Query: 1 MSSRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
MS +E DN E PL ++ +S+ + +V + R ++++ GR+ A+D H NMV
Sbjct: 1 MSDIGIETDNTSVLE------PLDLVRLSL--DERVYVKLRGDREIKGRLHAYDSHLNMV 52
Query: 61 LENVRE--MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
L +V E ++ +T + K + +F+RGDSVI++
Sbjct: 53 LSDVEETVYIVDIDETEEHIS-----TKKKHSEMIFVRGDSVILI 92
>gi|384247810|gb|EIE21296.1| hypothetical protein COCSUDRAFT_83520 [Coccomyxa subellipsoidea
C-169]
Length = 270
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 11/82 (13%)
Query: 28 MSVKNNTQVL--INCR------NNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 79
MSV +++L IN R +++ ++GR AFDRH N+VL + E PK G+ ++
Sbjct: 1 MSVSKTSKLLNYINYRMRVTLIDSRHIVGRFMAFDRHMNLVLGDAEEFRKLPPKKGRTEE 60
Query: 80 KALPVNKDRFISKMFLRGDSVI 101
+ ++ R + + LRGD VI
Sbjct: 61 ER---DQRRVLGLVLLRGDEVI 79
>gi|448090794|ref|XP_004197162.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|448095234|ref|XP_004198193.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|359378584|emb|CCE84843.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|359379615|emb|CCE83812.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
Length = 90
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
VL+ R +++ GR++ +D HCNMVL + E +L G+ V K + F+
Sbjct: 25 VLVKLRGAREMKGRLQGYDSHCNMVLSDAVEYIYDL---GEEVNSNPTVKKSEMV---FV 78
Query: 96 RGDSVIIV 103
RGDSVI++
Sbjct: 79 RGDSVILI 86
>gi|254579134|ref|XP_002495553.1| ZYRO0B14102p [Zygosaccharomyces rouxii]
gi|238938443|emb|CAR26620.1| ZYRO0B14102p [Zygosaccharomyces rouxii]
Length = 85
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 80
PL +L +++ + +V + R ++L G ++AFD HCN+VL + E EL G+ K
Sbjct: 5 APLDLLKLNL--DERVYVKLRGARELTGTLQAFDSHCNIVLSDAVESIYELV---DGELK 59
Query: 81 ALPVNKDRFISKMFLRGDSVIIV 103
+ ++ +F+RGDSV ++
Sbjct: 60 ----STEKSSEMVFVRGDSVTLI 78
>gi|444320755|ref|XP_004181034.1| hypothetical protein TBLA_0E04630 [Tetrapisispora blattae CBS 6284]
gi|387514077|emb|CCH61515.1| hypothetical protein TBLA_0E04630 [Tetrapisispora blattae CBS 6284]
Length = 82
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 80
PL +L +++ + ++ + R ++L G ++AFD HCN+VL + E EL G+ K
Sbjct: 5 APLDLLKLNL--DEKIYVKLRGARELSGILQAFDSHCNIVLSDAIETKYELV---DGELK 59
Query: 81 ALPVNKDRFISKMFLRGDSVIIV 103
+ N + +F+RGDSV ++
Sbjct: 60 STERNSEM----LFVRGDSVTLI 78
>gi|302309894|ref|XP_002999599.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049204|emb|CAR58072.1| unnamed protein product [Candida glabrata]
Length = 85
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 9/82 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L +++ + +V + R + + G ++AFD HCN+VL + E EL G+ K
Sbjct: 6 PLDLLKLNL--DERVYVKLRGARAMEGVLQAFDSHCNIVLSDAVETIYELV---DGELK- 59
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+++R +F+RGDSV ++
Sbjct: 60 ---SQERASEMIFVRGDSVTLI 78
>gi|358382874|gb|EHK20544.1| hypothetical protein TRIVIDRAFT_90246 [Trichoderma virens Gv29-8]
Length = 97
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 72
EE PL ++ + + N V + R +++L G++ A+D HCN+VL +V E +
Sbjct: 5 GEESSHVAEPLDLVRLLL--NEVVFVKLRGDRELKGKLHAYDSHCNLVLGDVEETIYAVD 62
Query: 73 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ + +++ +F+RGDSV+++
Sbjct: 63 DDEEEGDEVKTISRKS--EMLFVRGDSVVLI 91
>gi|356501499|ref|XP_003519562.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Glycine max]
Length = 282
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD--RFI 90
N ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK A +++ R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKPAEGADREDRRTL 71
Query: 91 SKMFLRGDSVI 101
+ LRG+ VI
Sbjct: 72 GLVLLRGEEVI 82
>gi|255714250|ref|XP_002553407.1| KLTH0D16082p [Lachancea thermotolerans]
gi|238934787|emb|CAR22969.1| KLTH0D16082p [Lachancea thermotolerans CBS 6340]
Length = 81
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L +++ + +V + R +++ G ++AFD HCN+VL N E EL G+ K+
Sbjct: 4 PLDLLKLNL--DEKVFVKLRGAREMTGVLQAFDSHCNIVLSNATETIYELV---DGELKS 58
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ +F+RGDSV ++
Sbjct: 59 STKGSEM----VFVRGDSVTLI 76
>gi|302891811|ref|XP_003044787.1| hypothetical protein NECHADRAFT_61990 [Nectria haematococca mpVI
77-13-4]
gi|256725712|gb|EEU39074.1| hypothetical protein NECHADRAFT_61990 [Nectria haematococca mpVI
77-13-4]
Length = 96
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTEL 71
EE + PL ++ + + N V + R +++L G++ A+D HCN+VL V E ++T
Sbjct: 5 GEESHHVSEPLDLVRLLL--NEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYTVD 62
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ K + R +F+RGDSV+++
Sbjct: 63 EDDEDDEVKTI----SRKSEMLFVRGDSVVLI 90
>gi|145527883|ref|XP_001449741.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417330|emb|CAK82344.1| unnamed protein product [Paramecium tetraurelia]
Length = 85
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 13/82 (15%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL VL S+ Q+ I RNN +L G + ++D H NM++ E T + K K+K
Sbjct: 7 PLDVLKFSIAQ--QIYIKMRNNIELKGTLVSYDNHLNMIISKAEE--TSFQEGIKTKRK- 61
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ ++LRGD +I++
Sbjct: 62 --------LDALYLRGDGIILI 75
>gi|156841174|ref|XP_001643962.1| hypothetical protein Kpol_1001p16 [Vanderwaltozyma polyspora DSM
70294]
gi|156114593|gb|EDO16104.1| hypothetical protein Kpol_1001p16 [Vanderwaltozyma polyspora DSM
70294]
Length = 85
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 9/82 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L +++ + +V + R ++L+G ++AFD HCN+VL + E EL G+ K+
Sbjct: 6 PLDLLKLNL--DEKVYVKLRGARELVGILQAFDSHCNIVLSDAVETIYELV---DGELKS 60
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
++ +F+RGD+V ++
Sbjct: 61 ----NEKTSEMLFVRGDTVTLI 78
>gi|320163467|gb|EFW40366.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 304
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 10 NVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNK----KLLGRVRAFDRHCNMVLENVR 65
NV EE GPLSVL VK + + + R++K ++L V FD+H NMV+ +V+
Sbjct: 167 NVLKRMEELQIGPLSVLYRCVKEHYRARLWIRDDKGIRSQMLATVLVFDKHFNMVVTDVQ 226
Query: 66 EM 67
E+
Sbjct: 227 EI 228
>gi|253744911|gb|EET01046.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia
intestinalis ATCC 50581]
Length = 83
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 11/71 (15%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
VL+ R+ + G ++A+DRH N+V E W E K KK+ L
Sbjct: 23 VLVQLRSGHFIAGVLKAYDRHLNLVFSEATETWEENGIEYKEDKKSF-----------ML 71
Query: 96 RGDSVIIVLRN 106
RGD+VI+V+ N
Sbjct: 72 RGDNVIMVVSN 82
>gi|119719338|ref|YP_919833.1| like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
gi|119524458|gb|ABL77830.1| Like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
Length = 73
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 17/87 (19%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 80
G +SVL S++ N VL+ + +++ G+++++D H N+VLEN E+ +G
Sbjct: 4 GTISVLAESLEKN--VLVKLKGGREIRGQLKSYDYHLNLVLENAEEI--------RG--- 50
Query: 81 ALPVNKDRFISKMFLRGDSVIIVLRNP 107
+ R + + +RGD+VI+V P
Sbjct: 51 ----TRTRQLGTIIVRGDNVILVSPAP 73
>gi|50425663|ref|XP_461428.1| DEHA2F25036p [Debaryomyces hansenii CBS767]
gi|49657097|emb|CAG89843.1| DEHA2F25036p [Debaryomyces hansenii CBS767]
Length = 93
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 15/83 (18%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ S+ + QVL+ N+K+ G + FD + NMVLENV E E P
Sbjct: 23 PLEIIDKSIGHKIQVLMT--NDKEFKGTLIGFDDYVNMVLENVEEFDNEGP--------- 71
Query: 82 LPVNKDRFISKMFLRGDSVIIVL 104
K + I KM L G V +++
Sbjct: 72 ----KGKVIKKMLLNGSQVAMLI 90
>gi|384491006|gb|EIE82202.1| hypothetical protein RO3G_06907 [Rhizopus delemar RA 99-880]
Length = 102
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + +V + R +++L G + A+D H NMVL V E T + + ++
Sbjct: 18 PLDLVRLSL--DERVYVKLRGDRELTGILHAYDGHLNMVLGEVEETITMVDVNEETLEEV 75
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ K F +F+RGD VI+V
Sbjct: 76 IRTVKRTF-EMLFVRGDGVILV 96
>gi|408389243|gb|EKJ68711.1| hypothetical protein FPSE_11107 [Fusarium pseudograminearum CS3096]
Length = 96
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTEL 71
EE + PL ++ + + N V + R +++L G++ A+D HCN+VL V E ++T
Sbjct: 5 GEEPHHVSEPLDLVRLLL--NEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYTVD 62
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ K + R +F+RGDSV+++
Sbjct: 63 EDDDDDELKTI----SRKSEMLFVRGDSVVLI 90
>gi|171680906|ref|XP_001905397.1| hypothetical protein [Podospora anserina S mat+]
gi|170940411|emb|CAP65637.1| unnamed protein product [Podospora anserina S mat+]
Length = 97
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 94
V + R +++L GR+ A+D HCN+VL +V E ++ + + K + R +F
Sbjct: 26 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEDEENDEEVKTIS----RKSEMLF 81
Query: 95 LRGDSVIIV 103
+RGDSV+++
Sbjct: 82 VRGDSVVLI 90
>gi|307105649|gb|EFN53897.1| hypothetical protein CHLNCDRAFT_136065 [Chlorella variabilis]
Length = 239
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 17/109 (15%)
Query: 16 EEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVR----AFDRHCNMVLENVREMWTEL 71
E GPL +L + ++V + R+ + + G AFD+H N+VL +V E +T L
Sbjct: 103 ERVQHGPLLLLKRWYQQRSRVRVVTRHARGVRGSSEGLLVAFDKHMNLVLRDVEEQYTVL 162
Query: 72 --------PKTG-KGKKKALPV----NKDRFISKMFLRGDSVIIVLRNP 107
P G G ++ V ++ R + ++F+RGDSV++V P
Sbjct: 163 LQVQRVKPPAPGSSGLERTRWVRQQEHRRRQLRQVFVRGDSVVLVSAGP 211
>gi|321465034|gb|EFX76038.1| hypothetical protein DAPPUDRAFT_226183 [Daphnia pulex]
Length = 103
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 23/92 (25%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV----------REMWTEL 71
PL ++ +S+ + ++ + RN ++L GR+ A+D+H NMVL V E + E+
Sbjct: 17 PLDLIRLSL--DERIYVKMRNERELRGRLHAYDQHLNMVLGEVEETVTTVEIDEETYEEV 74
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+T K R I +F+RGD VI+V
Sbjct: 75 YRTTK-----------RNIPMLFVRGDGVILV 95
>gi|145356505|ref|XP_001422469.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582712|gb|ABP00786.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 97
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE+ PL ++ +++ + +V + R +++ GR+ A+D+H NM+L +V E+ T
Sbjct: 5 EEDAAVREPLDLIRLAL--DEKVYVKLRGDREARGRLHAYDQHLNMILGDVEEVITSTET 62
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ ++ K R + +F+RGD+V +V
Sbjct: 63 DEETFEEFTKTTK-RSVPFLFIRGDAVTLV 91
>gi|302792517|ref|XP_002978024.1| hypothetical protein SELMODRAFT_443745 [Selaginella moellendorffii]
gi|300154045|gb|EFJ20681.1| hypothetical protein SELMODRAFT_443745 [Selaginella moellendorffii]
Length = 1100
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 23/33 (69%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 3 SRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQ 35
+R MEED K EEEFN GPLSVL SVK NTQ
Sbjct: 925 ARAMEEDTKK--EEEFNIGPLSVLTSSVKQNTQ 955
>gi|388851843|emb|CCF54437.1| probable LSM3-U6 snRNA-associated Sm-like protein [Ustilago hordei]
Length = 109
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 20 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 79
T P ++ +S+ +V + R +++L G + A+D H N++L +V E + + K
Sbjct: 23 TEPFDLIRLSISE--RVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINEETGK 80
Query: 80 KALPVNKDRFISKMFLRGDSVIIV 103
+ + V K R +F+RGDSVI+V
Sbjct: 81 ETVRVVK-RQSEMLFVRGDSVILV 103
>gi|346975981|gb|EGY19433.1| hypothetical protein VDAG_09635 [Verticillium dahliae VdLs.17]
Length = 96
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 94
V + R +++L GR+ A+D HCN+VL +V E ++ + + K + R +F
Sbjct: 26 VFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYVVDEDDDEEEAKTIS----RKSEMLF 81
Query: 95 LRGDSVIIV 103
+RGDSV+++
Sbjct: 82 VRGDSVVLI 90
>gi|150866473|ref|XP_001386093.2| hypothetical protein PICST_63621 [Scheffersomyces stipitis CBS
6054]
gi|149387729|gb|ABN68064.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 88
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
VL+ R +++ GR++ +D HCNMVL E G ++ + V K + F+
Sbjct: 25 VLVKLRGAREMKGRLQGYDSHCNMVLSEAEEYI-----YSAGDEETV-VKKTEMV---FV 75
Query: 96 RGDSVIIV 103
RGDSVI++
Sbjct: 76 RGDSVILI 83
>gi|296809782|ref|XP_002845229.1| U6 snRNP-associated protein Lsm3 [Arthroderma otae CBS 113480]
gi|238842617|gb|EEQ32279.1| U6 snRNP-associated protein Lsm3 [Arthroderma otae CBS 113480]
Length = 109
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E + + G++
Sbjct: 16 PLDLVRLSL--DEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVEEDEAGEETV 73
Query: 82 LPVNKDRFISKMFLRG 97
+ K +F+RG
Sbjct: 74 KTIKKQE--EMLFVRG 87
>gi|227827656|ref|YP_002829436.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.14.25]
gi|227830352|ref|YP_002832132.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus L.S.2.15]
gi|229579169|ref|YP_002837567.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus Y.G.57.14]
gi|229582076|ref|YP_002840475.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus Y.N.15.51]
gi|229584860|ref|YP_002843362.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.27]
gi|238619824|ref|YP_002914650.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.4]
gi|284997857|ref|YP_003419624.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|385773326|ref|YP_005645892.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
gi|385775964|ref|YP_005648532.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|227456800|gb|ACP35487.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus L.S.2.15]
gi|227459452|gb|ACP38138.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.14.25]
gi|228009883|gb|ACP45645.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.G.57.14]
gi|228012792|gb|ACP48553.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.N.15.51]
gi|228019910|gb|ACP55317.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.27]
gi|238380894|gb|ACR41982.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.4]
gi|284445752|gb|ADB87254.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|323474712|gb|ADX85318.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|323477440|gb|ADX82678.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
Length = 76
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 14/71 (19%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N VL+ + NK++ G +R++D+H N+VL + E+ ++ G GKK +
Sbjct: 14 NNLVLVKLKGNKEVRGTLRSYDQHMNLVLSDSEEIQSD----GSGKK----------LGT 59
Query: 93 MFLRGDSVIIV 103
+ +RGD+VI++
Sbjct: 60 IVIRGDNVILI 70
>gi|346320143|gb|EGX89744.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Cordyceps
militaris CM01]
Length = 96
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 11/75 (14%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N V + R +++L G++ A+D HCN+VL V E T G + + + IS+
Sbjct: 23 NEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEE-------TIYGVDEEDDEEEAKTISR 75
Query: 93 ----MFLRGDSVIIV 103
+F+RGDSV+++
Sbjct: 76 KSEMLFVRGDSVVLI 90
>gi|367026602|ref|XP_003662585.1| hypothetical protein MYCTH_2303370 [Myceliophthora thermophila ATCC
42464]
gi|347009854|gb|AEO57340.1| hypothetical protein MYCTH_2303370 [Myceliophthora thermophila ATCC
42464]
Length = 96
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
V + R +++L GR+ A+D HCN+VL +V E + K + + +F+
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVDDEDDEDVKTVSKKSE----MLFV 81
Query: 96 RGDSVIIV 103
RGDSV+++
Sbjct: 82 RGDSVVLI 89
>gi|310789782|gb|EFQ25315.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 96
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 94
V + R +++L GR+ A+D HCN+VL V E ++ + K + R +F
Sbjct: 26 VFVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYVVDEDEEDEEVKTIS----RKSEMLF 81
Query: 95 LRGDSVIIV 103
+RGDSV+++
Sbjct: 82 VRGDSVVLI 90
>gi|429850300|gb|ELA25589.1| u6 small nuclear ribonucleoprotein [Colletotrichum gloeosporioides
Nara gc5]
Length = 96
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 94
V + R +++L GR+ A+D HCN+VL V E ++ + K + R +F
Sbjct: 26 VFVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYVVDEDEEDEEVKTIS----RKSEMLF 81
Query: 95 LRGDSVIIV 103
+RGDSV+++
Sbjct: 82 VRGDSVVLI 90
>gi|358397340|gb|EHK46715.1| hypothetical protein TRIATDRAFT_299236 [Trichoderma atroviride IMI
206040]
Length = 97
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 72
EE PL ++ + + N V + R +++L G++ A+D HCN+VL V E +
Sbjct: 5 GEETSHVAEPLDLVRLLL--NEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYAVD 62
Query: 73 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ + +++ +F+RGDSV+++
Sbjct: 63 DDEEESDEVKTISRKS--EMLFVRGDSVVLI 91
>gi|2833357|sp|Q29329.1|SMD2_PIG RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
Length = 50
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 20/27 (74%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNK 44
FNTGPLSV S K TQVLINCRN K
Sbjct: 24 FNTGPLSVXTQSXKTXTQVLINCRNTK 50
>gi|359493113|ref|XP_003634512.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
2 [Vitis vinifera]
gi|296081172|emb|CBI18198.3| unnamed protein product [Vitis vinifera]
Length = 109
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 72
+EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T +
Sbjct: 3 SEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
Query: 73 KTGKGKKKALPVNKDRFISKMFLRGDS 99
+ ++ + V K R I K + DS
Sbjct: 61 IDDETYEEIVRVKK-RSIEKWHQKSDS 86
>gi|356553373|ref|XP_003545031.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Glycine max]
Length = 281
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD--RFI 90
N ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK A +++ R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKPAEGGDREDRRTL 71
Query: 91 SKMFLRGDSVI 101
+ LRG+ VI
Sbjct: 72 GLVLLRGEEVI 82
>gi|159111944|ref|XP_001706202.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia lamblia
ATCC 50803]
gi|157434296|gb|EDO78528.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia lamblia
ATCC 50803]
Length = 124
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
VL+ R+ + + G ++A+DRH N+V E W E + ++R L
Sbjct: 64 VLVQLRSGRFITGVLKAYDRHLNLVFSEATETWEE---------NGIEYTEER--KNFML 112
Query: 96 RGDSVIIVLRN 106
RGD+VI+V+ N
Sbjct: 113 RGDNVIMVVSN 123
>gi|126138356|ref|XP_001385701.1| hypothetical protein PICST_23784 [Scheffersomyces stipitis CBS
6054]
gi|126092979|gb|ABN67672.1| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 73
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 15/83 (18%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ S+ + +VL+ N+K+ G++ FD NMVLE+VRE+ ++
Sbjct: 4 PLEIIDKSIGHEIRVLMT--NDKEFTGKLVGFDDFVNMVLEDVREIDSD----------- 50
Query: 82 LPVNKDRFISKMFLRGDSVIIVL 104
V D+ I KM L G V +++
Sbjct: 51 --VKSDKVIKKMLLNGGQVAMII 71
>gi|389746884|gb|EIM88063.1| like-Sm ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 97
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKK 79
P ++ +S+ +V + R +++L G + A+D H N++L +V E M + P+ +
Sbjct: 11 PFDLIRLSLSE--RVFVKLRGDRELTGILHAYDGHMNLILSDVEETIMIVDAPEGVPPSQ 68
Query: 80 KALPVNKDRFISKMFLRGDSVIIV 103
+ + K R + +F+RGD VI+V
Sbjct: 69 SVVNMAK-RKVPMLFVRGDGVILV 91
>gi|170091648|ref|XP_001877046.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648539|gb|EDR12782.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 96
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 10/86 (11%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW----TELPKTGKG 77
P ++ +S+ +V + R +++L G + A+D H N+++ +V E T+ TG+G
Sbjct: 11 PFDLIRLSLSE--RVFVKLRGDRELTGILHAYDGHMNLIMSDVEETILIVDTDSVPTGQG 68
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIV 103
L V K R + +F+RGD VI+V
Sbjct: 69 ---VLQVAK-RKMEMLFVRGDGVILV 90
>gi|302792292|ref|XP_002977912.1| hypothetical protein SELMODRAFT_107803 [Selaginella moellendorffii]
gi|302810500|ref|XP_002986941.1| hypothetical protein SELMODRAFT_125039 [Selaginella moellendorffii]
gi|300145346|gb|EFJ12023.1| hypothetical protein SELMODRAFT_125039 [Selaginella moellendorffii]
gi|300154615|gb|EFJ21250.1| hypothetical protein SELMODRAFT_107803 [Selaginella moellendorffii]
Length = 97
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 23/101 (22%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR------- 65
+EE+ PL ++ +S+ + ++ + R +++L G++ A+D+H NM+L V
Sbjct: 3 SEEDGAVKEPLDLIRLSL--DERIYVKLRADRELRGKLHAYDQHLNMILGEVEEVVTTTE 60
Query: 66 ---EMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
E + E+ KT K R + +F+RGD VI+V
Sbjct: 61 IDDETYEEIVKTTK-----------RQVPYLFVRGDGVILV 90
>gi|284174982|ref|ZP_06388951.1| small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus 98/2]
gi|384434272|ref|YP_005643630.1| Sm ribonucleoprotein-like protein [Sulfolobus solfataricus 98/2]
gi|261602426|gb|ACX92029.1| Like-Sm ribonucleoprotein core [Sulfolobus solfataricus 98/2]
Length = 76
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 14/71 (19%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N VL+ + NK++ G +R++D+H N+VL + E+ ++ G GKK +
Sbjct: 14 NNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD----GSGKK----------LGT 59
Query: 93 MFLRGDSVIIV 103
+ +RGD+VI++
Sbjct: 60 IVIRGDNVILI 70
>gi|366998846|ref|XP_003684159.1| hypothetical protein TPHA_0B00530 [Tetrapisispora phaffii CBS 4417]
gi|357522455|emb|CCE61725.1| hypothetical protein TPHA_0B00530 [Tetrapisispora phaffii CBS 4417]
Length = 85
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 9/82 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L +++ + +V + R ++L+G ++AFD HCN VL + E +L G+ K
Sbjct: 6 PLDLLKLNL--DERVYVKLRGARELVGTLQAFDSHCNFVLSDAVETIYQLI---DGELK- 59
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
++++ +F+RGD+V ++
Sbjct: 60 ---SREKSSEMIFVRGDTVALI 78
>gi|331225531|ref|XP_003325436.1| U6 snRNA-associated Sm-like protein LSm3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309304426|gb|EFP81017.1| U6 snRNA-associated Sm-like protein LSm3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 97
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
P ++ +S+ +VLI R ++ L G + A+D H NMVL +V E T + +
Sbjct: 12 PFDLIRLSLSE--RVLIKLRGDRVLNGTLHAYDGHMNMVLSDVIETITVVEPAANPDDEP 69
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ R +F+RGD V++V
Sbjct: 70 IIRTVKRNCEMLFVRGDGVVLV 91
>gi|403214565|emb|CCK69066.1| hypothetical protein KNAG_0B06380 [Kazachstania naganishii CBS
8797]
Length = 83
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 11/83 (13%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL++L +++ + +V + R + + G ++AFD HCN+VL + E EL G+ +
Sbjct: 5 PLNLLKLNL--DERVYVKLRGARSMAGTLQAFDSHCNIVLSDAVETRYELVD-GELRSTE 61
Query: 82 LPVNKDRFISKM-FLRGDSVIIV 103
P S+M F+RGDSV +V
Sbjct: 62 RP-------SEMVFVRGDSVTLV 77
>gi|238499899|ref|XP_002381184.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
flavus NRRL3357]
gi|317150537|ref|XP_003190430.1| U6 snRNA-associated Sm-like protein LSm3 [Aspergillus oryzae RIB40]
gi|220692937|gb|EED49283.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
flavus NRRL3357]
Length = 96
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + V + R +++L GR+ A+D HCN+V+ +V E + + ++
Sbjct: 15 PLDLVRLSL--DEIVFVKLRGDRELKGRLHAYDSHCNLVMGDVEETIYVVEEDENEEEII 72
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ + +F+RGDSV+++
Sbjct: 73 RTIKRQE--EMLFVRGDSVVLI 92
>gi|71041581|pdb|1TH7|A Chain A, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041582|pdb|1TH7|B Chain B, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041583|pdb|1TH7|C Chain C, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041584|pdb|1TH7|D Chain D, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041585|pdb|1TH7|E Chain E, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041586|pdb|1TH7|F Chain F, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041587|pdb|1TH7|G Chain G, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041588|pdb|1TH7|H Chain H, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041589|pdb|1TH7|I Chain I, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041590|pdb|1TH7|J Chain J, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041591|pdb|1TH7|K Chain K, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041592|pdb|1TH7|L Chain L, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041593|pdb|1TH7|M Chain M, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041594|pdb|1TH7|N Chain N, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
Length = 81
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 14/71 (19%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N VL+ + NK++ G +R++D+H N+VL + E+ ++ G GKK +
Sbjct: 19 NNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD----GSGKK----------LGT 64
Query: 93 MFLRGDSVIIV 103
+ +RGD+VI++
Sbjct: 65 IVIRGDNVILI 75
>gi|71005460|ref|XP_757396.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
gi|46096383|gb|EAK81616.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
Length = 110
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 20 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 79
T P ++ +S+ +V + R +++L G + A+D H N++L +V E + +
Sbjct: 24 TEPFDLIRLSISE--RVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDVNDESGS 81
Query: 80 KALPVNKDRFISKMFLRGDSVIIV 103
+ + V K R +F+RGDSVI+V
Sbjct: 82 ETVRVVK-RQSEMLFVRGDSVILV 104
>gi|15897658|ref|NP_342263.1| small nuclear riboprotein (snRNP-2) [Sulfolobus solfataricus P2]
gi|13813927|gb|AAK41053.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus P2]
Length = 79
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 14/71 (19%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N VL+ + NK++ G +R++D+H N+VL + E+ ++ G GKK +
Sbjct: 17 NNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD----GSGKK----------LGT 62
Query: 93 MFLRGDSVIIV 103
+ +RGD+VI++
Sbjct: 63 IVIRGDNVILI 73
>gi|409050337|gb|EKM59814.1| hypothetical protein PHACADRAFT_170423 [Phanerochaete carnosa
HHB-10118-sp]
Length = 95
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE---MWTELPKTGKGK 78
P ++ +S+ +V + R +++L G + A+D H N++L +V E + ++ G+G+
Sbjct: 10 PFDLIRLSLSE--RVFVKLRGDRELSGILHAYDGHMNLILSDVEETILIVDQIDGAGEGQ 67
Query: 79 KKALPVN-KDRFISKMFLRGDSVIIV 103
+ VN R + +F+RGD VI+V
Sbjct: 68 QT---VNMAKRKMEMLFVRGDGVILV 90
>gi|328858783|gb|EGG07894.1| hypothetical protein MELLADRAFT_35186 [Melampsora larici-populina
98AG31]
Length = 95
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 35 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT--ELPKTGKGKKKALPVNKDRFISK 92
+VLI R ++++ G + A+D H NMVL +V E T E+P++ + V ++
Sbjct: 11 RVLIKLRGDREVTGTLHAYDGHMNMVLSDVTESITIVEVPESPNQEPTIRIVKRN--CEM 68
Query: 93 MFLRGDSVIIVL 104
+F+RGD V++V+
Sbjct: 69 LFVRGDGVVLVI 80
>gi|161527857|ref|YP_001581683.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|160339158|gb|ABX12245.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
Length = 80
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 16/81 (19%)
Query: 23 LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKAL 82
+S LM + K+ VL+ RNNK + G ++ FD H N+ LEN ++ E P
Sbjct: 8 ISTLMTNSKDKV-VLLRLRNNKTVQGTLKDFDIHMNLTLENAEDVSEEKPNP-------- 58
Query: 83 PVNKDRFISKMFLRGDSVIIV 103
I K+ LRGD+++ +
Sbjct: 59 -------IGKVLLRGDNILAI 72
>gi|260947516|ref|XP_002618055.1| hypothetical protein CLUG_01514 [Clavispora lusitaniae ATCC 42720]
gi|238847927|gb|EEQ37391.1| hypothetical protein CLUG_01514 [Clavispora lusitaniae ATCC 42720]
Length = 130
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 11/69 (15%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 94
VL+ R +++ G+++ +D HCNMVL + +E ++ E + KK + +F
Sbjct: 67 VLVKLRGAREMKGKLQGYDSHCNMVLSDAQETIYGENEEDTVVKKTEM----------VF 116
Query: 95 LRGDSVIIV 103
+RGDSVI++
Sbjct: 117 VRGDSVILI 125
>gi|398366287|ref|NP_013543.3| Lsm3p [Saccharomyces cerevisiae S288c]
gi|12230246|sp|P57743.1|LSM3_YEAST RecName: Full=U6 snRNA-associated Sm-like protein LSm3; AltName:
Full=SmX4 protein
gi|151940954|gb|EDN59336.1| snRNP protein [Saccharomyces cerevisiae YJM789]
gi|190405474|gb|EDV08741.1| snRNP protein [Saccharomyces cerevisiae RM11-1a]
gi|256271118|gb|EEU06213.1| Lsm3p [Saccharomyces cerevisiae JAY291]
gi|259148415|emb|CAY81662.1| Lsm3p [Saccharomyces cerevisiae EC1118]
gi|285813843|tpg|DAA09739.1| TPA: Lsm3p [Saccharomyces cerevisiae S288c]
gi|349580131|dbj|GAA25292.1| K7_Lsm3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392297940|gb|EIW09039.1| Lsm3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 89
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L +++ + +V I R + L+G ++AFD HCN+VL + E +L + +
Sbjct: 4 PLDLLKLNL--DERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESE- 60
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
R +F+RGD+V ++
Sbjct: 61 ------RRCEMVFIRGDTVTLI 76
>gi|170785183|pdb|3BW1|A Chain A, Crystal Structure Of Homomeric Yeast Lsm3 Exhibiting Novel
Octameric Ring Organisation
gi|170785184|pdb|3BW1|B Chain B, Crystal Structure Of Homomeric Yeast Lsm3 Exhibiting Novel
Octameric Ring Organisation
Length = 96
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L +++ + +V I R + L+G ++AFD HCN+VL + E +L + +
Sbjct: 11 PLDLLKLNL--DERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESE- 67
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
R +F+RGD+V ++
Sbjct: 68 ------RRCEMVFIRGDTVTLI 83
>gi|401624580|gb|EJS42636.1| lsm3p [Saccharomyces arboricola H-6]
Length = 89
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L +++ + +V I R + L+G ++AFD HCN+VL + E +L + +
Sbjct: 4 PLDLLKLNL--DERVYIKLRGARSLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESE- 60
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
R +F+RGD+V ++
Sbjct: 61 ------RRCEMVFVRGDTVTLI 76
>gi|390939095|ref|YP_006402833.1| Sm ribonucleoprotein-like protein [Desulfurococcus fermentans DSM
16532]
gi|390192202|gb|AFL67258.1| Like-Sm ribonucleoprotein core [Desulfurococcus fermentans DSM
16532]
Length = 75
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 14/69 (20%)
Query: 35 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 94
QVLI ++N L G++R+FD+H N+VL++ E+ + R + +
Sbjct: 16 QVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSN--------------GSTRKLGTVV 61
Query: 95 LRGDSVIIV 103
+RGD+V+++
Sbjct: 62 IRGDTVVLI 70
>gi|255075507|ref|XP_002501428.1| predicted protein [Micromonas sp. RCC299]
gi|226516692|gb|ACO62686.1| predicted protein [Micromonas sp. RCC299]
Length = 573
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 54/102 (52%), Gaps = 12/102 (11%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLG----RVRAFDRHCNMVLENVREMWT 69
+E GPLSVL+ + ++ + R+ + G ++AFD + NMVL++V E +T
Sbjct: 335 DESRERGGPLSVLVKAFDEGRRIRVATRHRSGIRGVAVAYLKAFDVYMNMVLQDVHEAYT 394
Query: 70 --------ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ + G+ + K ++ R ++++FLRG+ V+ +
Sbjct: 395 VRLRHSVVDPKRPGRTRVKYKLEHRRRHMNQVFLRGEQVVTI 436
>gi|303279124|ref|XP_003058855.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460015|gb|EEH57310.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 403
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 14/104 (13%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGR----VRAFDRHCNMVLENVREMWT 69
EE + GP+ V++ + + V++ ++ + G V+AFD++ NM+L++VRE++T
Sbjct: 268 EECKAKGGPIMVIVKAYEERRVVMVTTKHKLGIRGHAFAYVKAFDKYMNMLLQDVREIYT 327
Query: 70 --------ELPKTGKG--KKKALPVNKDRFISKMFLRGDSVIIV 103
+ K GK K K ++R + ++FLRG+ ++ V
Sbjct: 328 VRLKHRVEYVDKNGKTRYKIKHRLEGRERTMDQVFLRGEQIVTV 371
>gi|347841002|emb|CCD55574.1| similar to U6 snRNA-associated Sm-like protein LSm3 [Botryotinia
fuckeliana]
Length = 98
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
V + R +++L GR+ A+D HCN+VL +V E + ++ + + + +F+
Sbjct: 26 VYVKLRGDRELKGRLHAYDSHCNLVLGDVVETIYVVEESEDDDGEEIVKTVVKKSEMLFV 85
Query: 96 RGDSVIIV 103
RGDSVI++
Sbjct: 86 RGDSVILI 93
>gi|401838766|gb|EJT42227.1| LSM3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 89
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L +++ + +V I R + L+G ++AFD HCN+VL + E +L + +
Sbjct: 4 PLDLLKLNL--DERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESE- 60
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
R +F+RGD+V ++
Sbjct: 61 ------RRCEMVFVRGDTVTLI 76
>gi|390596776|gb|EIN06177.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 158
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFIS 91
N ++ + + + L G++ AFDRH N+VL E PK G+ +A PV + R +
Sbjct: 6 NWRLKVTINDGRALTGQMLAFDRHMNLVLAECEEFRRVRPKKKPGETEAGPVQEMKRSLG 65
Query: 92 KMFLRGDSVI 101
+ LRG++V+
Sbjct: 66 LVILRGETVV 75
>gi|378726255|gb|EHY52714.1| hypothetical protein HMPREF1120_00923 [Exophiala dermatitidis
NIH/UT8656]
Length = 104
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL V E + + +G++
Sbjct: 15 PLDLVRLSL--DEIVFVRLRGDRELKGRLHAYDSHCNLVLGEVEETIYTIEEDDEGEETV 72
Query: 82 LPVNKDRFISKMFLRG 97
K +F+RG
Sbjct: 73 KTTKKQS--DMLFVRG 86
>gi|156083891|ref|XP_001609429.1| small nuclear ribonucleoprotein E [Babesia bovis T2Bo]
gi|154796680|gb|EDO05861.1| small nuclear ribonucleoprotein E, putative [Babesia bovis]
Length = 89
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 53/98 (54%), Gaps = 15/98 (15%)
Query: 12 KNEEEEFNTGPLSVLMMSVKNNTQVLINCRN--NKKLLGRVRAFDRHCNMVLENVREMWT 69
K++ ++ T P++ + + T+V I + N K+ G++R FD + NMVLE+V E++
Sbjct: 5 KDKLQQIMTQPINQIFRFFTSGTRVQIWLYDQPNLKIEGKIRGFDEYMNMVLEDVEELYV 64
Query: 70 ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
+ K +++AL + L+GD++ ++ P
Sbjct: 65 K-----KQERRAL--------GTILLKGDAMALITAAP 89
>gi|308162403|gb|EFO64802.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia lamblia
P15]
Length = 83
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
VL+ R+ + + G ++A+DRH N+V E W E + ++R L
Sbjct: 23 VLVQLRSGRFITGVLKAYDRHLNLVFSEATETWEE---------NGIEYTEER--KNFML 71
Query: 96 RGDSVIIVLRN 106
RGD+VI+V+ N
Sbjct: 72 RGDNVIMVVSN 82
>gi|343427129|emb|CBQ70657.1| probable LSM3-U6 snRNA-associated Sm-like protein [Sporisorium
reilianum SRZ2]
Length = 113
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 20 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 79
T P ++ +S+ +V + R +++L G + A+D H N++L +V E + +
Sbjct: 27 TEPFDLIRLSISE--RVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINEETGA 84
Query: 80 KALPVNKDRFISKMFLRGDSVIIV 103
+ + V K R +F+RGDSVI+V
Sbjct: 85 ETVRVVK-RQSEMLFVRGDSVILV 107
>gi|443895185|dbj|GAC72531.1| small nuclear ribonucleoprotein [Pseudozyma antarctica T-34]
Length = 104
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 20 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 79
T P ++ +S+ +V + R +++L G + A+D H N++L +V E + +
Sbjct: 18 TEPFDLIRLSISE--RVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINDENGH 75
Query: 80 KALPVNKDRFISKMFLRGDSVIIV 103
+ + V K R +F+RGDSVI+V
Sbjct: 76 ETVRVVK-RQSEMLFVRGDSVILV 98
>gi|170111208|ref|XP_001886808.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164638166|gb|EDR02445.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 95
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
P ++ +S+ +V + R +++L G + A+D H N+++ +V E + +
Sbjct: 11 PFDLIRLSLSE--RVFVKLRGDRELTGILHAYDGHMNLIMSDVEETILIVDTDSVPNGQG 68
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
L V K R + +F+RGD VI+V
Sbjct: 69 LQVAK-RKMEMLFVRGDGVILV 89
>gi|449549919|gb|EMD40884.1| hypothetical protein CERSUDRAFT_131254 [Ceriporiopsis subvermispora
B]
Length = 97
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKK 79
P ++ +S+ +V + R +++L G + A+D H N++L +V E M + + +
Sbjct: 11 PFDLIRLSLSE--RVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDQVEGSANGQ 68
Query: 80 KALPVNKDRFISKMFLRGDSVIIV 103
+ + K R I +F+RGD VI+V
Sbjct: 69 NTVNIAK-RKIDMLFVRGDGVILV 91
>gi|332796496|ref|YP_004457996.1| Sm1 protein [Acidianus hospitalis W1]
gi|332694231|gb|AEE93698.1| archaeal Sm1 protein [Acidianus hospitalis W1]
Length = 76
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 14/68 (20%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
VL+ + NK++ G ++++D+H N+VL + E+ ++ G GKK I + +
Sbjct: 17 VLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSD----GSGKK----------IGTIVI 62
Query: 96 RGDSVIIV 103
RGD+VI++
Sbjct: 63 RGDNVILI 70
>gi|449690492|ref|XP_002158063.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like, partial
[Hydra magnipapillata]
Length = 72
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 69
PL ++ S+ + +V + RN+++L G++ A+D+H NMVL +V E+ T
Sbjct: 13 PLDLMKFSL--DEKVYVKMRNDRELRGKLHAYDQHLNMVLGDVEEIIT 58
>gi|449433521|ref|XP_004134546.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
gi|449490639|ref|XP_004158663.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
Length = 284
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK ++ R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKTNEERDERRTLGL 71
Query: 93 MFLRGDSVI 101
+ LRG+ VI
Sbjct: 72 VLLRGEEVI 80
>gi|358054953|dbj|GAA99020.1| hypothetical protein E5Q_05709 [Mixia osmundae IAM 14324]
Length = 133
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
P ++ +S+ +V I R ++++ G + A+D+H NM+L V E T + + A
Sbjct: 13 PFDLIRLSLSE--RVFIKLRGDREIRGVLHAYDQHMNMILGEVEETQTIVDLD---ESAA 67
Query: 82 LPVNK----DRFISKMFLRGDSVIIV 103
PV R I +F+RGDSV+++
Sbjct: 68 QPVGTLRQVKRQIDCLFVRGDSVVLL 93
>gi|407461851|ref|YP_006773168.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus koreensis
AR1]
gi|407045473|gb|AFS80226.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus koreensis
AR1]
Length = 75
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 16/81 (19%)
Query: 23 LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKAL 82
+S LM + K+ VL+ RNNK + G ++ FD H N+ LEN ++ E P
Sbjct: 5 ISTLMANSKDKV-VLLRLRNNKTIQGVLQDFDIHMNLTLENAEDVSEEKPDP-------- 55
Query: 83 PVNKDRFISKMFLRGDSVIIV 103
+ K+ LRGD+++ +
Sbjct: 56 -------LGKVLLRGDNILAI 69
>gi|395330396|gb|EJF62779.1| like-Sm ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 97
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
P ++ +S+ +V + R +++L G + A+D H N++L +V E + +
Sbjct: 11 PFDLIRLSLSE--RVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDHVEGAPEGH 68
Query: 82 LPVN-KDRFISKMFLRGDSVIIV 103
VN R + +F+RGD VI+V
Sbjct: 69 ATVNIAKRKMEMLFVRGDGVILV 91
>gi|365759243|gb|EHN01044.1| Lsm3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 126
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L +++ + +V I R + L+G ++AFD HCN+VL + E +L + +
Sbjct: 4 PLDLLKLNL--DERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESE- 60
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
R +F+RGD+V ++
Sbjct: 61 ------RRCEMVFVRGDTVTLI 76
>gi|326472596|gb|EGD96605.1| GTP-binding protein [Trichophyton tonsurans CBS 112818]
Length = 779
Score = 40.8 bits (94), Expect = 0.095, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E + + G++
Sbjct: 16 PLDLVRLSL--DEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVEENEAGEETI 73
Query: 82 LPVNKDRFISKMFLRGDS 99
+ K +F+RG S
Sbjct: 74 KTIKKQE--EMLFVRGTS 89
>gi|298711111|emb|CBJ32339.1| U6 snRNA-associated Sm-like protein LSm3 [Ectocarpus siliculosus]
Length = 93
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + CR ++L G++ ++D+H NMVL +V E T + ++
Sbjct: 8 PLDLIRLSL--DERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEI 65
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ +K R I +F+RGD VI+V
Sbjct: 66 VRTSK-RSIEMLFVRGDVVILV 86
>gi|403417353|emb|CCM04053.1| predicted protein [Fibroporia radiculosa]
Length = 97
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKK 79
P ++ +S+ +V + R +++L G + A+D H N++L +V E M + + K
Sbjct: 11 PFDLIRLSLSE--RVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDQVEGAPEGK 68
Query: 80 KALPVNKDRFISKMFLRGDSVIIV 103
+ V K R + +F+RGD VI+V
Sbjct: 69 GTVNVAK-RKMEMLFVRGDGVILV 91
>gi|344303705|gb|EGW33954.1| hypothetical protein SPAPADRAFT_59353 [Spathaspora passalidarum
NRRL Y-27907]
Length = 80
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 11/69 (15%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 94
VLI R +++ G+++ +D HCNMVL E ++ + + KK + +F
Sbjct: 19 VLIKLRGAREIKGKLQGYDSHCNMVLSEAEEYIYNDSNDDVETKKTEM----------VF 68
Query: 95 LRGDSVIIV 103
+RGDSVI++
Sbjct: 69 VRGDSVILI 77
>gi|212723246|ref|NP_001132868.1| uncharacterized protein LOC100194361 [Zea mays]
gi|194695618|gb|ACF81893.1| unknown [Zea mays]
Length = 107
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T +
Sbjct: 5 EEEIAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEI 62
Query: 74 TGKGKKKALPVNKDRFISKMFL 95
+ ++ + V+ F+ +F+
Sbjct: 63 DDETYEEIVRVSSFAFLPLVFI 84
>gi|344241612|gb|EGV97715.1| U6 snRNA-associated Sm-like protein LSm3 [Cricetulus griseus]
Length = 103
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 69
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T
Sbjct: 11 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVT 56
>gi|324567919|gb|ADY49901.1| U6 snRNA-associated Sm-like protein LSm3, partial [Ascaris suum]
Length = 76
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 69
PL ++ +S+ + ++ + RN++++ GR+ AFD+H NM+L V E T
Sbjct: 20 PLDLIRLSL--DERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVT 65
>gi|336260805|ref|XP_003345195.1| hypothetical protein SMAC_07871 [Sordaria macrospora k-hell]
gi|380088006|emb|CCC05133.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 97
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
V + R +++L GR+ A+D HCN+VL V E + + +++ +F+
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYVVDDEDADEDDLKTISRKS--EMLFV 83
Query: 96 RGDSVIIV 103
RGDSV+++
Sbjct: 84 RGDSVVLI 91
>gi|294885997|ref|XP_002771506.1| U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
gi|239875210|gb|EER03322.1| U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
Length = 97
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
Query: 10 NVKNEEEEFNTGPLSVLMMSVKN---NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
V TGP S L +++ + +++ + R +++L+G +R FD + NMVL++V E
Sbjct: 4 TVSAPPTATATGP-SFLPLALVDKCVGSRIWVIMRGDRELVGTLRGFDDYVNMVLDDVTE 62
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
+T LP GK K I + L G SV +++
Sbjct: 63 -YTILPDGGKRVDK---------IESILLNGSSVAMLV 90
>gi|21536707|gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana]
Length = 254
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KK + + R +
Sbjct: 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPAKGNKKTSEEREERRTLGL 72
Query: 93 MFLRGDSVI 101
+ LRG+ VI
Sbjct: 73 VLLRGEEVI 81
>gi|357494377|ref|XP_003617477.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
gi|355518812|gb|AET00436.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
Length = 394
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD-RFIS 91
N ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK +D R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPP-AKGKKTTDGDREDRRTLG 71
Query: 92 KMFLRGDSVI 101
+ LRG+ VI
Sbjct: 72 LVLLRGEEVI 81
>gi|449547896|gb|EMD38863.1| hypothetical protein CERSUDRAFT_112585 [Ceriporiopsis subvermispora
B]
Length = 184
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFIS 91
N ++ + + + +G++ AFDRH N+VL E PK G+ +A PV + R +
Sbjct: 16 NWRLKVTINDGRAFVGQMLAFDRHMNLVLAECEEFRRIRPKKKPGETEAGPVQEMKRTLG 75
Query: 92 KMFLRGDSVI 101
+ LRG++V+
Sbjct: 76 LVILRGETVV 85
>gi|307105891|gb|EFN54138.1| hypothetical protein CHLNCDRAFT_135527 [Chlorella variabilis]
Length = 159
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 27 MMSVKNNTQVLINCR------NNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 80
M S LIN R + ++++GR AFDRH N+VL + E PK G ++
Sbjct: 1 MASKSGKLLALINYRMRVTVVDGRQIVGRFMAFDRHMNLVLGDAEEFRKLPPKKGVAEED 60
Query: 81 ALPVNKDRFISKMFLRGDSVI 101
+ R + + LRGD V+
Sbjct: 61 R---EQRRVLGLVILRGDEVV 78
>gi|422293907|gb|EKU21207.1| hypothetical protein NGA_2089810, partial [Nannochloropsis gaditana
CCMP526]
gi|422294090|gb|EKU21390.1| hypothetical protein NGA_2089820, partial [Nannochloropsis gaditana
CCMP526]
Length = 162
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 16 EEFNTGPLSVLMMSVKNNTQVLINCRNNKKL----LGRVRAFDRHCNMVLENVRE 66
E TGP +L + V++ R L GR+R FDRH N+VLE E
Sbjct: 83 ESLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAEE 137
>gi|324510990|gb|ADY44587.1| Small nuclear ribonucleoprotein-associated protein B [Ascaris suum]
Length = 165
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++ + ++++ +G RAFD+H N++L E PK G KK+ P + R +
Sbjct: 14 NYRMRVALQDSRTFVGYFRAFDKHMNILLSECEEFRAIKPKPG---KKSAPEEEMRTLGL 70
Query: 93 MFLRGDSVI 101
+ LRG+ ++
Sbjct: 71 VLLRGEHIV 79
>gi|302652112|ref|XP_003017916.1| hypothetical protein TRV_08082 [Trichophyton verrucosum HKI 0517]
gi|291181501|gb|EFE37271.1| hypothetical protein TRV_08082 [Trichophyton verrucosum HKI 0517]
Length = 193
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 16 PLDLVRLSL--DEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEE 58
>gi|393216136|gb|EJD01627.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 96
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
P ++ +S+ N +V + R +++L G + A+D H N++L +V E L + + A
Sbjct: 11 PFDLIRLSL--NERVFVKLRGDRELNGVLHAYDGHMNLILSDVEETIM-LVDSNEAAPPA 67
Query: 82 LPVN-KDRFISKMFLRGDSVIIV 103
+N R + +F+RGD VI+V
Sbjct: 68 GRINVAKRKMDMLFVRGDGVILV 90
>gi|302497389|ref|XP_003010695.1| hypothetical protein ARB_03397 [Arthroderma benhamiae CBS 112371]
gi|291174238|gb|EFE30055.1| hypothetical protein ARB_03397 [Arthroderma benhamiae CBS 112371]
Length = 193
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 16 PLDLVRLSL--DEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEE 58
>gi|297799992|ref|XP_002867880.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
gi|297313716|gb|EFH44139.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
Length = 258
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 10/73 (13%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD----R 88
N ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK +N++ R
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKK----INEEREDRR 67
Query: 89 FISKMFLRGDSVI 101
+ + LRG+ VI
Sbjct: 68 TLGLVLLRGEEVI 80
>gi|15237095|ref|NP_193777.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|30685110|ref|NP_849414.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|79325195|ref|NP_001031682.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|238480869|ref|NP_001154258.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|5262167|emb|CAB45810.1| putative snRNP protein [Arabidopsis thaliana]
gi|7268840|emb|CAB79044.1| putative snRNP protein [Arabidopsis thaliana]
gi|28393634|gb|AAO42236.1| putative snRNP protein [Arabidopsis thaliana]
gi|28827492|gb|AAO50590.1| putative snRNP protein [Arabidopsis thaliana]
gi|222423490|dbj|BAH19715.1| AT4G20440 [Arabidopsis thaliana]
gi|332658930|gb|AEE84330.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658931|gb|AEE84331.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658932|gb|AEE84332.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658933|gb|AEE84333.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
Length = 257
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 10/73 (13%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD----R 88
N ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK +N++ R
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKK----INEEREDRR 67
Query: 89 FISKMFLRGDSVI 101
+ + LRG+ VI
Sbjct: 68 TLGLVLLRGEEVI 80
>gi|409040887|gb|EKM50373.1| hypothetical protein PHACADRAFT_104351 [Phanerochaete carnosa
HHB-10118-sp]
Length = 105
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFIS 91
N ++ + + + +G++ AFDRH N+VL E PK G+ +A P + R +
Sbjct: 6 NWRLKVTVNDGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKSGETEAGPAQEMKRTLG 65
Query: 92 KMFLRGDSVI 101
+ LRG++V+
Sbjct: 66 LVILRGETVV 75
>gi|170105048|ref|XP_001883737.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164641372|gb|EDR05633.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 103
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++ + + + L G++ AFDRH N+VL + E PK G++ A R +
Sbjct: 6 NWRLKVTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEETAPEQEMKRTLGL 65
Query: 93 MFLRGDSVI 101
+ LRG++V+
Sbjct: 66 VILRGETVV 74
>gi|290992103|ref|XP_002678674.1| predicted protein [Naegleria gruberi]
gi|284092287|gb|EFC45930.1| predicted protein [Naegleria gruberi]
Length = 83
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++ I ++ ++++G+ AFD+ N+V+ + E +PK KG++ V + R +
Sbjct: 10 NYRMRITLQDGRQIVGKFMAFDKFMNLVVADCEEFRKIIPKGSKGEE----VEQKRSLGF 65
Query: 93 MFLRGDSVI-IVLRNP 107
+ +RG+++I IV+ P
Sbjct: 66 LLIRGENIISIVVEGP 81
>gi|218884605|ref|YP_002428987.1| Small nuclear ribonucleoprotein (snRNP)-like protein
[Desulfurococcus kamchatkensis 1221n]
gi|218766221|gb|ACL11620.1| Small nuclear ribonucleoprotein (snRNP) - like protein
[Desulfurococcus kamchatkensis 1221n]
Length = 75
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 14/69 (20%)
Query: 35 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 94
VLI ++N L G++R+FD+H N+VL++ E+ + R + +
Sbjct: 16 HVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSN--------------GSTRKLGTIV 61
Query: 95 LRGDSVIIV 103
+RGD+V+++
Sbjct: 62 IRGDTVVLI 70
>gi|315425372|dbj|BAJ47038.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426552|dbj|BAJ48182.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426610|dbj|BAJ48238.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|343485302|dbj|BAJ50956.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
Length = 74
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 14/81 (17%)
Query: 23 LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKAL 82
+S+ ++S + VL+ RN K L G ++ +D+H N+VLE+ E+ E
Sbjct: 5 VSLKILSKSVGSTVLVRLRNGKVLRGLLKGYDQHMNIVLEDTDELIDE------------ 52
Query: 83 PVNKDRFISKMFLRGDSVIIV 103
N + + +RGDS++++
Sbjct: 53 --NTQNKLGTIVVRGDSIVMI 71
>gi|169861670|ref|XP_001837469.1| hypothetical protein CC1G_01381 [Coprinopsis cinerea okayama7#130]
gi|116501490|gb|EAU84385.1| hypothetical protein CC1G_01381 [Coprinopsis cinerea okayama7#130]
Length = 95
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
P ++ +S+ +V + R ++++ G + A+D H N++L +V E + +
Sbjct: 11 PFDLIRLSLSE--RVFVKLRGDREMTGILHAYDGHMNLILSDVEETIMIVDTDAPNGQGV 68
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ + K R + +F+RGD VI+V
Sbjct: 69 VNIAK-RKMDMLFVRGDGVILV 89
>gi|146304997|ref|YP_001192313.1| Sm ribonucleoprotein-like protein [Metallosphaera sedula DSM 5348]
gi|145703247|gb|ABP96389.1| Small nuclear ribonucleoprotein, LSM family [Metallosphaera sedula
DSM 5348]
Length = 75
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 41/68 (60%), Gaps = 14/68 (20%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
VL+ + NK++ G ++++D+H N+VL + E+ ++ G+GKK + + +
Sbjct: 17 VLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSD----GEGKK----------MGTIVI 62
Query: 96 RGDSVIIV 103
RGD+VI++
Sbjct: 63 RGDNVILI 70
>gi|224117856|ref|XP_002317685.1| predicted protein [Populus trichocarpa]
gi|222860750|gb|EEE98297.1| predicted protein [Populus trichocarpa]
Length = 250
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNEEREDRRTLGL 71
Query: 93 MFLRGDSVI 101
+ LRG+ VI
Sbjct: 72 VLLRGEEVI 80
>gi|83315999|ref|XP_731034.1| ribonucleoprotein [Plasmodium yoelii yoelii 17XNL]
gi|23490948|gb|EAA22599.1| Putative Ribonucleoprotein [Plasmodium yoelii yoelii]
Length = 104
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 53/95 (55%), Gaps = 14/95 (14%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGR---------VRAFDRHCNMVLENVREMW 68
F GPL + ++++ ++ + C+ +++L G + A+D H NM+L N +E +
Sbjct: 10 FYKGPLDYIRLNMEE--EIFLKCKGDRELTGTLDVRKWIYIIIAYDNHLNMILSNAKEKY 67
Query: 69 TELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
++ T + ++ + +R + +F+RGDS+I+V
Sbjct: 68 KQV--TIENNEECVK-QIERNLDMVFVRGDSIILV 99
>gi|260949819|ref|XP_002619206.1| hypothetical protein CLUG_00365 [Clavispora lusitaniae ATCC 42720]
gi|238846778|gb|EEQ36242.1| hypothetical protein CLUG_00365 [Clavispora lusitaniae ATCC 42720]
Length = 164
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM------WTELPKTGKGKKKALPVNK 86
N ++ I+ + + G++ AFD+H N+VL + E + EL K G + + VN+
Sbjct: 49 NFRLQISTLDGRSFTGQLLAFDKHMNLVLADTEEARTTKKSYQELAKAKVGSQ--VKVNE 106
Query: 87 D-RFISKMFLRGDSVIIVL 104
D RF+ + LRG+ V+ V+
Sbjct: 107 DKRFLGLIILRGEQVVSVV 125
>gi|428178094|gb|EKX46971.1| hypothetical protein GUITHDRAFT_70214 [Guillardia theta CCMP2712]
Length = 97
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L +S+ + ++ + R +++L G++ A+D+H NMVL V E+ T + ++
Sbjct: 12 PLDLLRLSL--DERIYVKMRGDRELRGKLHAYDQHLNMVLGEVEEVVTVVEYDEDTFEEH 69
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ + K R I +++RGD VI+V
Sbjct: 70 VKMTK-RNIDMLYVRGDGVILV 90
>gi|169849793|ref|XP_001831595.1| SMB [Coprinopsis cinerea okayama7#130]
gi|116507233|gb|EAU90128.1| SMB [Coprinopsis cinerea okayama7#130]
Length = 168
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++ + ++ + L G++ AFDRH N+VL + E PK G++ A R +
Sbjct: 6 NWRLKVTIQDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEEVAPEQELKRTLGL 65
Query: 93 MFLRGDSVIIV 103
+ LRG++V+ +
Sbjct: 66 VILRGEAVVSI 76
>gi|402226567|gb|EJU06627.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 92
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 35 QVLINCRNNKKLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKKKALPVNKDRFISK 92
+V + + + L G + A+D H NM++ +V E + E ++G + R +
Sbjct: 22 RVFVKLKGERSLTGVLHAYDGHMNMIMSDVEETILMVEPEESGSTVQ-----TMKRAMEM 76
Query: 93 MFLRGDSVIIV 103
+F+RGDSVI+V
Sbjct: 77 LFVRGDSVILV 87
>gi|123493455|ref|XP_001326296.1| Sm protein [Trichomonas vaginalis G3]
gi|121909208|gb|EAY14073.1| Sm protein [Trichomonas vaginalis G3]
Length = 84
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 22/101 (21%)
Query: 1 MSSRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
MS +PM +D ++ E+ +V + + ++L G + A+D H N++
Sbjct: 1 MSEKPMPQDYIRLSMEK-----------------RVKVKVQEGQELEGVLHAYDEHYNII 43
Query: 61 LENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 101
L +V E L K G K +PV +++ I +F+RGD ++
Sbjct: 44 LGDVLESIMGLDKNG----KFIPVRQNQ-IDMLFVRGDRIV 79
>gi|367054976|ref|XP_003657866.1| hypothetical protein THITE_2124020 [Thielavia terrestris NRRL 8126]
gi|347005132|gb|AEO71530.1| hypothetical protein THITE_2124020 [Thielavia terrestris NRRL 8126]
Length = 179
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 32 NNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFIS 91
+ ++++ R+ +KLLG +R++D+ N+VL++ +E P T + + L + DR +
Sbjct: 50 TDKKLMVALRDGRKLLGILRSWDQFANLVLQSTKERIFVPPGTAPNQTRGLYADIDRGL- 108
Query: 92 KMFLRGDSVIIV 103
+RG++V+++
Sbjct: 109 -FLVRGENVLLM 119
>gi|297794953|ref|XP_002865361.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
lyrata]
gi|297311196|gb|EFH41620.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KK + R +
Sbjct: 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPAKGSKKTKEDREERRTLGL 72
Query: 93 MFLRGDSVI 101
+ LRG+ VI
Sbjct: 73 VLLRGEEVI 81
>gi|58259393|ref|XP_567109.1| Sm-like protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134107471|ref|XP_777620.1| hypothetical protein CNBA7410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260314|gb|EAL22973.1| hypothetical protein CNBA7410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223246|gb|AAW41290.1| Sm-like protein, putative [Cryptococcus neoformans var. neoformans
JEC21]
Length = 95
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +++ +VLI R ++ + G + A+D H N+V+ E + T +G+
Sbjct: 12 PLDLVKLAL--GERVLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHVVDVTEEGQP-- 67
Query: 82 LPVNKDRFISKM-FLRGDSVIIV 103
LP +R ++M F+RGD VI++
Sbjct: 68 LPPRIERRTAEMLFVRGDGVILL 90
>gi|224115254|ref|XP_002332199.1| predicted protein [Populus trichocarpa]
gi|222875306|gb|EEF12437.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNEEREDRRTLGL 71
Query: 93 MFLRGDSVI 101
+ LRG+ VI
Sbjct: 72 VLLRGEEVI 80
>gi|255578055|ref|XP_002529898.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
gi|223530625|gb|EEF32501.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
Length = 275
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNEEREDRRTLGL 71
Query: 93 MFLRGDSVI 101
+ LRG+ VI
Sbjct: 72 VLLRGEEVI 80
>gi|312379338|gb|EFR25646.1| hypothetical protein AND_08834 [Anopheles darlingi]
Length = 338
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 35/140 (25%)
Query: 4 RPME-EDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRA----FDRHCN 58
RP+ + N+ N ++ GPL+ + + T+V I R + + G V FDRH N
Sbjct: 102 RPLRYQKNLLNRLDKIAVGPLAAVKRWMDTRTRVRIYVRKQRGIRGHVSGVIEMFDRHWN 161
Query: 59 MVLENVREMW-------TELPKTGKGKKK------------ALPVNK-----------DR 88
+ + +V E W +E+P G LP K R
Sbjct: 162 LAISDVHESWRRRKYRYSEIPGPQLGTPAEDCSERLRQLGITLPTVKTRSADKKYVICTR 221
Query: 89 FISKMFLRGDSVIIVLRNPK 108
+ KM + G+ V++V PK
Sbjct: 222 TVHKMLVLGEQVVLVTAEPK 241
>gi|118482995|gb|ABK93409.1| unknown [Populus trichocarpa]
Length = 286
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNEEREDRRTLGL 71
Query: 93 MFLRGDSVI 101
+ LRG+ VI
Sbjct: 72 VLLRGEEVI 80
>gi|255578051|ref|XP_002529896.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
gi|223530623|gb|EEF32499.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
Length = 275
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNEEREDRRTLGL 71
Query: 93 MFLRGDSVI 101
+ LRG+ VI
Sbjct: 72 VLLRGEEVI 80
>gi|409081623|gb|EKM81982.1| hypothetical protein AGABI1DRAFT_112159 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426196857|gb|EKV46785.1| hypothetical protein AGABI2DRAFT_136942 [Agaricus bisporus var.
bisporus H97]
Length = 178
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++ + + + L G++ AFDRH N+VL + E PK G++ A R +
Sbjct: 16 NWRLKVTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEETAPEQEMKRTLGL 75
Query: 93 MFLRGDSVIIV 103
+ LRG++V+ +
Sbjct: 76 VILRGETVVSI 86
>gi|326516156|dbj|BAJ88101.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 123
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 25/113 (22%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVR--------------------- 51
+EE+ PL ++ +S+ + ++ + R++++L G++
Sbjct: 7 SEEDVAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHDLNGKIISASKYTEEDTLNVL 64
Query: 52 -AFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
A+D+H NM+L +V E+ T + + ++ + +K R I +F+RGD VI+V
Sbjct: 65 PAYDQHLNMILGDVEEIVTSIEIDDETYEEIVRTSK-RTIPYLFVRGDGVILV 116
>gi|389739317|gb|EIM80511.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 179
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFIS 91
N ++ + + + L G++ AFDRH N+VL E PK G+ +A P + R +
Sbjct: 16 NWRLKVTINDGRALTGQMLAFDRHMNLVLAECEEFRRVRPKKKAGEAEAGPEQEMKRTLG 75
Query: 92 KMFLRGDSVIIV 103
+ LRG++V+ +
Sbjct: 76 LVILRGETVVSI 87
>gi|392593019|gb|EIW82345.1| like-Sm ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 97
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL-PKTGKGKKK 80
P ++ +S+ +V + R +++++G + A+D H N++L +V E + P G +
Sbjct: 11 PFDLIRLSLSE--RVFVKLRGDREVVGILHAYDGHMNLILSDVEETIMIVDPIEGSPNSE 68
Query: 81 ALPVNKDRFISKMFLRGDSVIIV 103
R ++ +F+RGD VI+V
Sbjct: 69 GTVKVAKRKMNMLFVRGDGVILV 91
>gi|256083947|ref|XP_002578196.1| hypothetical protein [Schistosoma mansoni]
gi|353232715|emb|CCD80070.1| hypothetical protein Smp_160100 [Schistosoma mansoni]
Length = 475
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 7/64 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKK----LLGRVRAFDRHCNMVLENVREMWTELPKT--- 74
P++ L +++N +Q+++ R K+ ++G + AFDR+ N++L+NV E LPK+
Sbjct: 191 PMASLWKAMQNQSQIMVMTRGLKEPRASIIGNLVAFDRYWNLILKNVTEYSVHLPKSALK 250
Query: 75 GKGK 78
G GK
Sbjct: 251 GNGK 254
>gi|367035444|ref|XP_003667004.1| hypothetical protein MYCTH_57908 [Myceliophthora thermophila ATCC
42464]
gi|347014277|gb|AEO61759.1| hypothetical protein MYCTH_57908 [Myceliophthora thermophila ATCC
42464]
Length = 159
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 32 NNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFIS 91
+ ++++ R+ +KLLG +R++D+ N+VL++ +E P T + + L + DR +
Sbjct: 30 TDKKLMVALRDGRKLLGILRSWDQFANLVLQSTKERIFVAPGTVPNQPRGLYADIDRGL- 88
Query: 92 KMFLRGDSVIIV 103
+RG++V+++
Sbjct: 89 -FLVRGENVLLL 99
>gi|395331807|gb|EJF64187.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 181
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFIS 91
N ++ + + + +G++ AFDRH N+VL E PK G+ +A P+ + R +
Sbjct: 16 NWRLKVTINDGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKPGETEAGPMQEMKRTLG 75
Query: 92 KMFLRGDSVI 101
+ LRG++V+
Sbjct: 76 LVILRGETVV 85
>gi|392565532|gb|EIW58709.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 178
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFIS 91
N ++ + + + +G++ AFDRH N+VL E PK G+ +A P+ + R +
Sbjct: 16 NWRLKVTINDGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKAGETEAGPMQEMKRTLG 75
Query: 92 KMFLRGDSVI 101
+ LRG++V+
Sbjct: 76 LVILRGETVV 85
>gi|225463717|ref|XP_002263359.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
[Vitis vinifera]
gi|147774905|emb|CAN61706.1| hypothetical protein VITISV_001610 [Vitis vinifera]
Length = 276
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 11/73 (15%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD----R 88
N ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KGKK N++ R
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKK-----NEEREERR 66
Query: 89 FISKMFLRGDSVI 101
+ + LRG+ VI
Sbjct: 67 TLGLVLLRGEEVI 79
>gi|255513759|gb|EET90024.1| Sm-family ribonucleoprotein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 75
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 13/69 (18%)
Query: 35 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 94
QVLI +NN + G+V +FD H N+VL+N EL G+ K K + +
Sbjct: 17 QVLIRLKNNLNIRGKVTSFDAHMNIVLDNAE----ELDANGELKAK---------LGTIL 63
Query: 95 LRGDSVIIV 103
LRG ++I V
Sbjct: 64 LRGGNIIFV 72
>gi|51970288|dbj|BAD43836.1| unknown protein [Arabidopsis thaliana]
Length = 254
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD----R 88
N ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KG KK N++ R
Sbjct: 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGNKK---TNEEREERR 68
Query: 89 FISKMFLRGDSVI 101
+ + LRG+ VI
Sbjct: 69 TLGLVLLRGEEVI 81
>gi|119478785|ref|XP_001259441.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Neosartorya
fischeri NRRL 181]
gi|119407595|gb|EAW17544.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Neosartorya
fischeri NRRL 181]
Length = 94
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 15 PLDLVRLSL--DEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|269986972|gb|EEZ93248.1| Like-Sm ribonucleoprotein core [Candidatus Parvarchaeum acidiphilum
ARMAN-4]
Length = 78
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 14/68 (20%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
VL+ +N + G++ AFD H N+ LEN E KK A + R + +F+
Sbjct: 21 VLVELKNGHAITGKLVAFDVHINVTLENAEE-----------KKDA---DTLRKLGNVFI 66
Query: 96 RGDSVIIV 103
RGD++I++
Sbjct: 67 RGDTIILI 74
>gi|392333626|ref|XP_003752950.1| PREDICTED: LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like protein
LSm3-like [Rattus norvegicus]
gi|392353940|ref|XP_003751639.1| PREDICTED: LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like protein
LSm3-like [Rattus norvegicus]
Length = 177
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 19 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE--MWTELP-KTG 75
NT + ++++ Q+ + RN+++L GR+ +D+H NM+L + E M E+ +T
Sbjct: 12 NTAEERLDLLTINLEEQICMKTRNDRELSGRLHVYDQHLNMILGDAEETVMMIEIDEETY 71
Query: 76 KGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ K+ N I +F++GD V+
Sbjct: 72 EEIDKSTKXN----IPMLFIQGDDVLFA 95
>gi|15241519|ref|NP_199263.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|79329893|ref|NP_001032011.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|9758703|dbj|BAB09157.1| unnamed protein product [Arabidopsis thaliana]
gi|14596137|gb|AAK68796.1| Unknown protein [Arabidopsis thaliana]
gi|18377438|gb|AAL66885.1| unknown protein [Arabidopsis thaliana]
gi|51971895|dbj|BAD44612.1| unknown protein [Arabidopsis thaliana]
gi|62320496|dbj|BAD95039.1| hypothetical protein [Arabidopsis thaliana]
gi|332007733|gb|AED95116.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|332007734|gb|AED95117.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
Length = 254
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD----R 88
N ++ + ++ ++L+G+ AFDRH N+VL + E + +LP KG KK N++ R
Sbjct: 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGNKK---TNEEREERR 68
Query: 89 FISKMFLRGDSVI 101
+ + LRG+ VI
Sbjct: 69 TLGLVLLRGEEVI 81
>gi|308811052|ref|XP_003082834.1| urophorphyrin III methylase (ISS) [Ostreococcus tauri]
gi|116054712|emb|CAL56789.1| urophorphyrin III methylase (ISS) [Ostreococcus tauri]
Length = 487
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 12/106 (11%)
Query: 4 RPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 63
R M ED+ E PL ++ +++ + +V + R +++ GR+ A+D+H NM+L
Sbjct: 391 RAMAEDDAAVRE------PLDLIRLAL--DERVYVKLRGDREARGRLHAYDQHLNMILGE 442
Query: 64 VREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV---LRN 106
V E T + ++ K R + +F+RGD+V +V LRN
Sbjct: 443 VEETITSTETDEETFEEFTKTTKRR-VPYLFIRGDAVTLVSPPLRN 487
>gi|296242979|ref|YP_003650466.1| LSM family small nuclear ribonucleoprotein [Thermosphaera aggregans
DSM 11486]
gi|296095563|gb|ADG91514.1| Small nuclear ribonucleoprotein, LSM family [Thermosphaera
aggregans DSM 11486]
Length = 76
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 14/68 (20%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
VLI +++ L G++R++D+H N+VL++V E+ G+G R + + +
Sbjct: 17 VLIKIKDDITLRGKLRSYDQHLNIVLDDVEEI-------GEG-------GSTRKLGTVVI 62
Query: 96 RGDSVIIV 103
RGD+V+ +
Sbjct: 63 RGDTVVFI 70
>gi|226294169|gb|EEH49589.1| GTP-binding protein AGP-1 [Paracoccidioides brasiliensis Pb18]
Length = 576
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 15 PLDLVRLSL--DEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|405118137|gb|AFR92912.1| hypothetical protein CNAG_00781 [Cryptococcus neoformans var.
grubii H99]
Length = 95
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +++ +VLI R ++ + G + A+D H N+V+ E + T +G+
Sbjct: 12 PLDLVKLAL--GERVLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHIVDVTEEGQP-- 67
Query: 82 LPVNKDRFISKM-FLRGDSVIIV 103
LP +R ++M F+RGD VI++
Sbjct: 68 LPPRVERRSAEMLFVRGDGVILL 90
>gi|374633102|ref|ZP_09705469.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
gi|373524586|gb|EHP69463.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
Length = 78
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 14/68 (20%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
VL+ + NK++ G ++++D+H N+VL + E+ ++ G GKK + + +
Sbjct: 20 VLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSD----GGGKK----------MGTIVI 65
Query: 96 RGDSVIIV 103
RGD+VI++
Sbjct: 66 RGDNVILI 73
>gi|258567110|ref|XP_002584299.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237905745|gb|EEP80146.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 135
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 15 PLDLVRLSL--DEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|150400725|ref|YP_001324491.1| like-Sm ribonucleoprotein core [Methanococcus aeolicus Nankai-3]
gi|150013428|gb|ABR55879.1| Like-Sm ribonucleoprotein core [Methanococcus aeolicus Nankai-3]
Length = 71
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 19/85 (22%)
Query: 19 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGK 78
N PL L S+ NT VL+ ++ + + GR++A+D H N+ LEN + G+
Sbjct: 4 NQRPLDALGKSI--NTNVLVKLKDGQTVKGRLKAYDLHLNVALENAKF---------DGE 52
Query: 79 KKALPVNKDRFISKMFLRGDSVIIV 103
+K P+ + +RGD+V+ +
Sbjct: 53 EKEYPL--------IVVRGDNVLFI 69
>gi|302686860|ref|XP_003033110.1| hypothetical protein SCHCODRAFT_67091 [Schizophyllum commune H4-8]
gi|300106804|gb|EFI98207.1| hypothetical protein SCHCODRAFT_67091 [Schizophyllum commune H4-8]
Length = 179
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++ + + ++L+G++ AFDRH N+VL E PK G++ R +
Sbjct: 16 NWRIKVTINDGRQLVGQMLAFDRHMNLVLAECEEFRRIRPKKKPGQETQPEQEVKRALGL 75
Query: 93 MFLRGDSVI 101
+ LRG++V+
Sbjct: 76 VILRGETVV 84
>gi|121713870|ref|XP_001274546.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
clavatus NRRL 1]
gi|119402699|gb|EAW13120.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
clavatus NRRL 1]
Length = 74
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 15 PLDLVRLSL--DEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|344302358|gb|EGW32663.1| hypothetical protein SPAPADRAFT_61726 [Spathaspora passalidarum
NRRL Y-27907]
Length = 84
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ SV N +VL+ ++K+ G++ FD + NMVLE+V E+ E K+ KK
Sbjct: 12 PLEIIDKSVGNKVKVLMT--SDKEFYGKLIGFDDYVNMVLEDVVEIDNEGTKSDPVKKML 69
Query: 82 L 82
L
Sbjct: 70 L 70
>gi|323447461|gb|EGB03380.1| hypothetical protein AURANDRAFT_72740 [Aureococcus anophagefferens]
Length = 129
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
+ +VLI R+ + L+G +R+FD+ N+VLE+ E +P + V D +
Sbjct: 21 DKKVLIILRDGRNLVGVMRSFDQFSNVVLEDTYERRVVIPD----DESQPAVYGDVPLGL 76
Query: 93 MFLRGDSVIIV 103
+RGDSV+++
Sbjct: 77 YVIRGDSVVLL 87
>gi|388582050|gb|EIM22356.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 89
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 49/84 (58%), Gaps = 12/84 (14%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNK--KLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 79
P++V+ ++ T++ I +N +L GR+ FD + N++L++V E++ GKK
Sbjct: 12 PINVIFKYLQQRTKIQIWLYDNVDCRLEGRIIGFDEYMNVILDDVEEVFY-------GKK 64
Query: 80 KALPVNKDRFISKMFLRGDSVIIV 103
++ P N + ++ L+GD++ ++
Sbjct: 65 QSQPRNS---LGRILLKGDNITLI 85
>gi|124028416|ref|YP_001013736.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
gi|123979110|gb|ABM81391.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
Length = 77
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 14/68 (20%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
VL+ + ++ GR++++D+H N+VLE+ E++ + + R + + +
Sbjct: 17 VLVKLKGANEVRGRLKSYDQHLNLVLEDAEEIYED--------------GRTRKLGTIVI 62
Query: 96 RGDSVIIV 103
RGD+V+++
Sbjct: 63 RGDTVLLI 70
>gi|70997292|ref|XP_753396.1| U6 small nuclear ribonucleoprotein (Lsm3) [Aspergillus fumigatus
Af293]
gi|66851032|gb|EAL91358.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
fumigatus Af293]
gi|159126877|gb|EDP51993.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
fumigatus A1163]
Length = 83
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 15 PLDLVRLSL--DEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|330805691|ref|XP_003290812.1| hypothetical protein DICPUDRAFT_81530 [Dictyostelium purpureum]
gi|325079022|gb|EGC32643.1| hypothetical protein DICPUDRAFT_81530 [Dictyostelium purpureum]
Length = 250
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 18/106 (16%)
Query: 11 VKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVR----AFDRHCNMVLENVRE 66
+KN F GP+S+L +++ +++ I R+ + G + AFD+H N++L +V E
Sbjct: 148 IKNIANLFTDGPISLLRKALETKSRIKIIIRDISSIRGYCQGYLVAFDKHWNIILRDVEE 207
Query: 67 MWTEL--------PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
+TE KT + +K ++ ++F++GD+++ V+
Sbjct: 208 EYTEYHFLSAEEQEKTNRHQKIK------KYYGQLFIKGDTIVSVI 247
>gi|124487908|gb|ABN12037.1| small nuclear ribonucleoprotein B'-like protein [Maconellicoccus
hirsutus]
Length = 135
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 28 MSVKNNTQVL------INC--RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 79
M V N ++L I C ++ + +G +AFD+H N++L E + + K
Sbjct: 1 MPVTKNNKLLQIINYRIRCILQDGRTFIGTFKAFDKHMNLILSECDEY-----RKYRTKG 55
Query: 80 KALPVNKDRFISKMFLRGDSVIIV 103
A P + R + + LRGDSV+ V
Sbjct: 56 DAPPREEKRTLGFVLLRGDSVVTV 79
>gi|357126031|ref|XP_003564692.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform 2
[Brachypodium distachyon]
Length = 114
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 19/106 (17%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVR----------------AFDRHC 57
EEE PL ++ +S+ + ++ + R++++L G++ A+D+H
Sbjct: 5 EEEIAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHVSASSYFCLLILNLLMAYDQHL 62
Query: 58 NMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
NM+L +V E+ T + + ++ + + R I +F+RGD VI+V
Sbjct: 63 NMILGDVEEIVTTVEIDDETYEEIVRTTR-RTIPFLFVRGDGVILV 107
>gi|336363832|gb|EGN92203.1| hypothetical protein SERLA73DRAFT_147568 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380958|gb|EGO22110.1| hypothetical protein SERLADRAFT_394784 [Serpula lacrymans var.
lacrymans S7.9]
Length = 100
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFIS 91
N ++ + + + L G++ AFDRH N+VL + E PK G+ + P + R +
Sbjct: 16 NWRLKVTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGETETPPEQEMKRALG 75
Query: 92 KMFLRGDSVI 101
+ LRG++V+
Sbjct: 76 LVILRGETVV 85
>gi|321250515|ref|XP_003191834.1| sm-like protein [Cryptococcus gattii WM276]
gi|317458301|gb|ADV20047.1| Sm-like protein, putative [Cryptococcus gattii WM276]
Length = 95
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +++ +VLI R ++ + G + A+D H N+V+ E + T +G+
Sbjct: 12 PLDLVKLAL--GERVLIKLRGDRIVTGILHAYDAHMNVVVSQAEESIHIIDVTEEGQP-- 67
Query: 82 LPVNKDRFISKM-FLRGDSVIIV 103
LP +R ++M F+RGD VI++
Sbjct: 68 LPPRTERRNAEMLFVRGDGVILL 90
>gi|15920992|ref|NP_376661.1| small nuclear ribonucleoprotein [Sulfolobus tokodaii str. 7]
gi|342306290|dbj|BAK54379.1| archaeal Sm protein [Sulfolobus tokodaii str. 7]
Length = 79
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 14/71 (19%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
+ VL+ + +K + G ++++D H N+VLEN E+ ++ R +
Sbjct: 18 GSTVLVKLKGDKIVRGTLKSYDMHMNLVLENSEEVMSD--------------GSTRKVGT 63
Query: 93 MFLRGDSVIIV 103
+ +RGD+VI+V
Sbjct: 64 IIIRGDNVILV 74
>gi|91082993|ref|XP_974329.1| PREDICTED: similar to Small nuclear ribonucleoprotein-associated
protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB)
[Tribolium castaneum]
Length = 212
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N +V I ++++ +G +AFD+H NM+L + E PK K +++ + R +
Sbjct: 12 NYRVRITLQDSRTFIGTFKAFDKHMNMILGDCEEFRKIKPKNSKVERE-----EKRVLGF 66
Query: 93 MFLRGDSVI 101
+ LRG+S++
Sbjct: 67 VLLRGESIV 75
>gi|270008314|gb|EFA04762.1| hypothetical protein TcasGA2_TC030631 [Tribolium castaneum]
Length = 214
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N +V I ++++ +G +AFD+H NM+L + E PK K +++ + R +
Sbjct: 14 NYRVRITLQDSRTFIGTFKAFDKHMNMILGDCEEFRKIKPKNSKVERE-----EKRVLGF 68
Query: 93 MFLRGDSVI 101
+ LRG+S++
Sbjct: 69 VLLRGESIV 77
>gi|255087740|ref|XP_002505793.1| predicted protein [Micromonas sp. RCC299]
gi|226521063|gb|ACO67051.1| predicted protein [Micromonas sp. RCC299]
Length = 204
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 11/73 (15%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++ I + ++++GR AFDRH N+VL + E + +LP KK L +DR + +
Sbjct: 14 NYRMRITIVDGRQIVGRFMAFDRHMNLVLSDAEE-FRKLP-----PKKGL-TEEDRAVRR 66
Query: 93 ----MFLRGDSVI 101
+ LRG+ V+
Sbjct: 67 VLGFILLRGEEVV 79
>gi|116204657|ref|XP_001228139.1| hypothetical protein CHGG_10212 [Chaetomium globosum CBS 148.51]
gi|88176340|gb|EAQ83808.1| hypothetical protein CHGG_10212 [Chaetomium globosum CBS 148.51]
Length = 182
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 32 NNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFIS 91
+ ++++ R+ +KL+G +R++D+ N+VL++ +E P T + + L + DR +
Sbjct: 53 TDKKLMLALRDGRKLVGILRSWDQFANLVLQSTKERIFVPPGTAPDQVRGLYADVDRGL- 111
Query: 92 KMFLRGDSVIIV 103
+RG++V+++
Sbjct: 112 -FLVRGENVLLL 122
>gi|168011312|ref|XP_001758347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690382|gb|EDQ76749.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 152
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 80
N ++ + ++ ++L+G+ AFDRH N+VL + E+ PK GK +++
Sbjct: 14 NWRIRVTIQDGRQLVGKFMAFDRHMNLVLGDCEELRRVPPKKGKSQEE 61
>gi|333986739|ref|YP_004519346.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
gi|333824883|gb|AEG17545.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
Length = 80
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 17/92 (18%)
Query: 13 NEEEEFNTG-PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL 71
N ++ NT PL VL S+ N+QVLI + ++ G + +FD H N+VL + E+
Sbjct: 2 NAQKNLNTSRPLDVLGKSL--NSQVLIKLKGGREFRGVLNSFDMHMNLVLNDAEEL---- 55
Query: 72 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
++G+ ++ + + +RGD+++ +
Sbjct: 56 -ESGESSRR---------LGVVLIRGDNIVYI 77
>gi|443925698|gb|ELU44474.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 122
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
P ++ +S+ + +V + R +++L G + A+D H N+++ +V E + +
Sbjct: 13 PFDLIRLSL--SERVYVKLRGDRELTGVLHAYDGHMNLIMSDVEESIMIVENPENPENPN 70
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ V K R + +F+RGD VI+V
Sbjct: 71 VKVAK-RNVEMLFVRGDGVILV 91
>gi|354548424|emb|CCE45160.1| hypothetical protein CPAR2_701720 [Candida parapsilosis]
Length = 90
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
V++ R ++ G+++ +D HCN+VL + E K P+ K +F+
Sbjct: 26 VIVKLRGAREFKGKLQGYDSHCNLVLSDATETIF------SDKDGVEPIIKRT--EMVFV 77
Query: 96 RGDSVIIV 103
RGDSVI++
Sbjct: 78 RGDSVILI 85
>gi|320101466|ref|YP_004177058.1| LSM family small nuclear ribonucleoprotein [Desulfurococcus mucosus
DSM 2162]
gi|319753818|gb|ADV65576.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
mucosus DSM 2162]
Length = 75
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 14/68 (20%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
VLI +++ L G++R+FD+H N+VL++ E+ G G + L + +
Sbjct: 17 VLIKTKDSVSLRGKLRSFDQHLNIVLDDTEEIR------GDGSVRKL--------GTVVI 62
Query: 96 RGDSVIIV 103
RGD+V+++
Sbjct: 63 RGDTVVLI 70
>gi|406867312|gb|EKD20350.1| U6 snRNP-associated protein Lsm3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 97
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 8 EDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
ED V E PL ++ + + + V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 5 EDGVSAPAE-----PLDLVRLCL--DEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEET 57
Query: 68 WTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ + ++ ++K +F+RGDSV+++
Sbjct: 58 VYVVEEDEDEEETVKTIHKKS--EMLFVRGDSVVLI 91
>gi|350639679|gb|EHA28033.1| hypothetical protein ASPNIDRAFT_211308 [Aspergillus niger ATCC
1015]
Length = 723
Score = 38.1 bits (87), Expect = 0.73, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 15 PLDLVRLSL--DEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|359417782|ref|ZP_09209851.1| like-Sm ribonucleoprotein core [Candidatus Haloredivivus sp. G17]
gi|358031875|gb|EHK00710.1| like-Sm ribonucleoprotein core [Candidatus Haloredivivus sp. G17]
Length = 78
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 17/84 (20%)
Query: 22 PLSVLMMSVKNNTQVLIN--CRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 79
P VL S N V + N+ + G ++AFD+H N+ LEN R + TE +T G
Sbjct: 7 PFDVLDSSKDGNVLVKLKGYSGNDVTVSGELQAFDKHLNIWLENAR-VNTEDGQTDYG-- 63
Query: 80 KALPVNKDRFISKMFLRGDSVIIV 103
K+FLRGD+V+ V
Sbjct: 64 ------------KLFLRGDNVLFV 75
>gi|393243225|gb|EJD50740.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 183
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD---RF 89
N ++ + + + L+G + AFDRH N+VL + E PK G+ P + R
Sbjct: 16 NWRLKVTLNDGRALVGHMLAFDRHMNLVLADCEEFRRVRPKKKAGESSEGPAPEQEIKRT 75
Query: 90 ISKMFLRGDSVI 101
+ + LRG++V+
Sbjct: 76 LGLVILRGETVV 87
>gi|448535532|ref|XP_003870996.1| Smx4 component of heteroheptameric complexes (Lsm1p, Lsm8p)
[Candida orthopsilosis Co 90-125]
gi|380355352|emb|CCG24870.1| Smx4 component of heteroheptameric complexes (Lsm1p, Lsm8p)
[Candida orthopsilosis]
Length = 91
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ + + V++ R ++ G+++ +D HCN+VL + E K
Sbjct: 14 PLDLIRFQL--DEYVIVKLRGAREFKGKLQGYDSHCNLVLSDATETIF------SDKDGV 65
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
P+ K +F+RGDSVI++
Sbjct: 66 DPIIKRT--EMVFVRGDSVILI 85
>gi|440474314|gb|ELQ43063.1| hypothetical protein OOU_Y34scaffold00174g28 [Magnaporthe oryzae
Y34]
Length = 78
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 24 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 54
>gi|67515531|ref|XP_657651.1| hypothetical protein AN0047.2 [Aspergillus nidulans FGSC A4]
gi|40746210|gb|EAA65366.1| hypothetical protein AN0047.2 [Aspergillus nidulans FGSC A4]
Length = 725
Score = 37.7 bits (86), Expect = 0.95, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 15 PLDLVRLSL--DEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|88604287|ref|YP_504465.1| like-Sm ribonucleoprotein, core [Methanospirillum hungatei JF-1]
gi|88189749|gb|ABD42746.1| Small nuclear ribonucleoprotein, LSM family [Methanospirillum
hungatei JF-1]
Length = 80
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 16/87 (18%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
P+ +L V N VLI+ + +++ G ++ +D H N+VL+ E+ +G+ ++
Sbjct: 10 PMDILD-QVLNRQPVLISLKGGREIKGVLQGYDVHMNLVLDKAEEIV-------QGQAQS 61
Query: 82 LPVNKDRFISKMFLRGDSVIIVLRNPK 108
I + +RGD+VI + NP+
Sbjct: 62 --------IGTLIIRGDNVIYISPNPQ 80
>gi|118575248|ref|YP_874991.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
gi|118193769|gb|ABK76687.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
Length = 78
Score = 37.7 bits (86), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 14/76 (18%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N VLI + K + G + FD+H N++LE+ E+ E + R +
Sbjct: 15 NKVVLIKLKGGKAIRGNLLGFDQHMNLLLESSEEIPVE--------------GETRTLGT 60
Query: 93 MFLRGDSVIIVLRNPK 108
+ +RGD+V+I+ P
Sbjct: 61 IVVRGDNVVIISPPPA 76
>gi|281210655|gb|EFA84821.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 132
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 11/71 (15%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
+ ++++ R+ KK +G +R FD+ N++L++ + + G K + D+ +
Sbjct: 13 DKKLIVVLRDGKKFIGVMRTFDQFANIILQDT------IERIYVGDKYS-----DKHLGV 61
Query: 93 MFLRGDSVIIV 103
F+RGD+V+I+
Sbjct: 62 FFIRGDTVVIL 72
>gi|342872477|gb|EGU74840.1| hypothetical protein FOXB_14644 [Fusarium oxysporum Fo5176]
Length = 179
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 13 NEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
EE + PL ++ + + N V + R +++L G++ A+D HCN+VL V E
Sbjct: 5 GEEPHHVSEPLDLVRLLL--NEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEE 56
>gi|149621318|ref|XP_001518812.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Ornithorhynchus anatinus]
Length = 155
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
+ +V ++ ++ +K +G AFDRH N+VL + E L KG K+ P+ R +
Sbjct: 13 HYRVRVSIKDGRKFVGTFIAFDRHMNLVLADCEEFRLTL---NKGLKE--PIEVKRTLGF 67
Query: 93 MFLRGDSVI 101
+ LRG++++
Sbjct: 68 ILLRGENIV 76
>gi|432329090|ref|YP_007247234.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
gi|432135799|gb|AGB05068.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
Length = 75
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 16/82 (19%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL VL S+ N VL+ + NK+ G + +D+H N+VL+NV E+ G+ K
Sbjct: 7 PLHVLHESL--NKPVLVAMKGNKEYRGVLDGYDQHLNLVLKNVEEIIN-------GESKG 57
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ + + +RGD+VI +
Sbjct: 58 VH-------NVVIVRGDNVIYI 72
>gi|407464208|ref|YP_006775090.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp. AR2]
gi|407047396|gb|AFS82148.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp. AR2]
Length = 76
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 23 LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKAL 82
+S LM + K VL+ RN + + G +R FD H N+ LE+ ++ E
Sbjct: 5 ISTLMTNSKGKV-VLLRLRNTRTVQGTLRDFDIHMNLTLEDAEDVTEE------------ 51
Query: 83 PVNKDRFISKMFLRGDSVIIV 103
K + K+ LRGD+++ V
Sbjct: 52 ---KHEKLGKILLRGDNILAV 69
>gi|336364678|gb|EGN93033.1| hypothetical protein SERLA73DRAFT_146187 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386725|gb|EGO27871.1| hypothetical protein SERLADRAFT_383548 [Serpula lacrymans var.
lacrymans S7.9]
Length = 96
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKK 79
P ++ +S+ +V + R ++++ G + A+D H N++L +V E M ++ + ++
Sbjct: 11 PFDLIRLSLSE--RVYVKLRGDREVTGILHAYDGHMNLILSDVEETIMIVDVDAPLE-ER 67
Query: 80 KALPVNKDRFISKMFLRGDSVIIV 103
+A+ + K R + +F+RGD VI+V
Sbjct: 68 RAVKMAK-RKMEMLFVRGDGVILV 90
>gi|428183707|gb|EKX52564.1| hypothetical protein GUITHDRAFT_48153, partial [Guillardia theta
CCMP2712]
Length = 75
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 38 INCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 97
+ + ++L+G+ AFD+H N+VL + E K GKG+++ + R + + LRG
Sbjct: 8 VTIEDGRQLVGKFMAFDKHMNIVLGDCDEFRRLSVKGGKGEER----EEKRSLGLVILRG 63
Query: 98 DSVI 101
+SV+
Sbjct: 64 ESVV 67
>gi|322711294|gb|EFZ02868.1| U6 snRNP-associated protein Lsm3 [Metarhizium anisopliae ARSEF
23]
Length = 85
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
N V + R +++L G++ A+D HCN+VL +V E
Sbjct: 23 NEVVFVKLRGDRELKGKLHAYDSHCNLVLGDVEE 56
>gi|342321540|gb|EGU13473.1| Hypothetical Protein RTG_00195 [Rhodotorula glutinis ATCC 204091]
Length = 97
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 27 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVN 85
++ V + +V + R +++L G + A+D H NM+L V E ++ G V
Sbjct: 12 LIRVSLSERVFVKLRGDRELRGVLHAYDGHMNMILSEVEETIYVVDADEASGDNVVRTVK 71
Query: 86 KDRFISKMFLRGDSVIIV 103
++ +F+RGD V++V
Sbjct: 72 RN--CDMLFVRGDGVVLV 87
>gi|13541187|ref|NP_110875.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
gi|20178114|sp|Q97BU5.2|RUXX_THEVO RecName: Full=Putative snRNP Sm-like protein
Length = 83
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 19 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGK 78
NT P+ VL ++ N VLI+ + N++ G + +D + N+VL+N E+ G+
Sbjct: 7 NTKPMDVLKNALSRN--VLIDVKGNREYSGILEGYDVYMNVVLQNASEIIN-------GE 57
Query: 79 KKALPVNKDRFISKMFLRGDSVIIV 103
K + ++ +RGD+VI V
Sbjct: 58 NKGV-------FDRILVRGDNVIFV 75
>gi|14324575|dbj|BAB59502.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 87
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 19 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGK 78
NT P+ VL ++ N VLI+ + N++ G + +D + N+VL+N E+ G+
Sbjct: 11 NTKPMDVLKNALSRN--VLIDVKGNREYSGILEGYDVYMNVVLQNASEIIN-------GE 61
Query: 79 KKALPVNKDRFISKMFLRGDSVIIV 103
K + ++ +RGD+VI V
Sbjct: 62 NKGV-------FDRILVRGDNVIFV 79
>gi|254166962|ref|ZP_04873815.1| hypothetical protein ABOONEI_370 [Aciduliprofundum boonei T469]
gi|289597064|ref|YP_003483760.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
gi|197623818|gb|EDY36380.1| hypothetical protein ABOONEI_370 [Aciduliprofundum boonei T469]
gi|289534851|gb|ADD09198.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
Length = 75
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 16/82 (19%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL VL S+ N VL+ + NK+ G + +D+H N+VL+NV E+ G+ K
Sbjct: 7 PLHVLHESL--NKPVLVAMKGNKEYRGVLDGYDQHLNLVLKNVEEIIN-------GESKG 57
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ + + +RGD+VI +
Sbjct: 58 VH-------NVVIVRGDNVIYI 72
>gi|393794933|ref|ZP_10378297.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 76
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 15/77 (19%)
Query: 27 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 86
+M+ N +L+ RNNK + G ++ FD H N+ L+N ++ K +P
Sbjct: 8 LMTNNKNKVILLRLRNNKSVRGSLQDFDIHMNLTLDNAEDI---------SDNKVVP--- 55
Query: 87 DRFISKMFLRGDSVIIV 103
+ ++ LRGD+++ V
Sbjct: 56 ---LGRILLRGDNILAV 69
>gi|303314473|ref|XP_003067245.1| U6 snRNA-associated Sm-like protein LSm3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240106913|gb|EER25100.1| U6 snRNA-associated Sm-like protein LSm3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320037539|gb|EFW19476.1| U6 small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
gi|392869885|gb|EAS28419.2| U6 small nuclear ribonucleoprotein [Coccidioides immitis RS]
Length = 98
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL V E + + ++
Sbjct: 15 PLDLVRLSL--DEIVFVKLRGDRELKGRLHAYDSHCNLVLGEVEETVYVVEEDENEEEII 72
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ + +F+RGDSV+++
Sbjct: 73 KTIKRQE--DMLFVRGDSVVLI 92
>gi|46111709|ref|XP_382912.1| hypothetical protein FG02736.1 [Gibberella zeae PH-1]
Length = 795
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
EE + PL ++ + + N V + R +++L G++ A+D HCN+VL V E
Sbjct: 6 EEPHHVSEPLDLVRLLL--NEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEE 56
>gi|341038886|gb|EGS23878.1| hypothetical protein CTHT_0005870 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 209
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 32 NNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFIS 91
+ ++++ R+ +KL+G +R++D+ N+VL++ +E P T + + L + DR +
Sbjct: 80 TDKKLMVALRDGRKLIGILRSWDQFANLVLQSTKERIFIPPNTMPNQPRGLYADIDRGL- 138
Query: 92 KMFLRGDSVIIV 103
+RG++V+++
Sbjct: 139 -FLVRGENVLLL 149
>gi|336469053|gb|EGO57215.1| hypothetical protein NEUTE1DRAFT_121723 [Neurospora tetrasperma
FGSC 2508]
Length = 168
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
V + R +++L GR+ A+D HCN+VL V E
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGEVEE 56
>gi|303289090|ref|XP_003063833.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454901|gb|EEH52206.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 204
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++ + + ++++GR AFDRH N+VL + E PK G +++ R +
Sbjct: 14 NYRMRVTIVDGRQIVGRFMAFDRHMNIVLGDAEEFRKLPPKKGLTEEER---QVRRVLGF 70
Query: 93 MFLRGDSVI 101
+ LRG+ V+
Sbjct: 71 LLLRGEEVV 79
>gi|161527729|ref|YP_001581555.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|160339030|gb|ABX12117.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
Length = 78
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N VLI + NK + G + FD+H N++L++ E+ E G+ K L
Sbjct: 15 NQIVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEIPAE------GEAKGL--------GS 60
Query: 93 MFLRGDSVIIVLRNP 107
+ +RGD+V+++ P
Sbjct: 61 IVVRGDNVVMISPPP 75
>gi|350291326|gb|EGZ72540.1| hypothetical protein NEUTE2DRAFT_158467 [Neurospora tetrasperma
FGSC 2509]
Length = 163
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
V + R +++L GR+ A+D HCN+VL V E
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGEVEE 56
>gi|407464058|ref|YP_006774940.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp. AR2]
gi|407047246|gb|AFS81998.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp. AR2]
Length = 78
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N VLI + NK + G + FD+H N++L++ E+ E G K+L
Sbjct: 15 NQVVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEIPAE------GDSKSL--------GS 60
Query: 93 MFLRGDSVIIVLRNP 107
+ +RGD+V+++ P
Sbjct: 61 IVVRGDNVVMISPPP 75
>gi|50302335|ref|XP_451102.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640233|emb|CAH02690.1| KLLA0A02299p [Kluyveromyces lactis]
Length = 93
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 45 KLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
++ G++R FD N+V+++ E+ + PK+GK +K F+ ++ L+GD++ +V+
Sbjct: 38 RIRGKIRGFDEFMNVVIDDAFEIAVD-PKSGKESD-----DKAVFLGRIMLKGDNITLVV 91
Query: 105 RN 106
N
Sbjct: 92 AN 93
>gi|302348719|ref|YP_003816357.1| hypothetical protein ASAC_0920 [Acidilobus saccharovorans 345-15]
gi|302329131|gb|ADL19326.1| hypothetical protein ASAC_0920 [Acidilobus saccharovorans 345-15]
Length = 78
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 15/71 (21%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N V + + + + G +++FD+H N+VLEN E+ T +G R +
Sbjct: 19 NASVYVKLKGGEGVKGVLKSFDQHLNLVLENAEEL------TERG---------SRSLGT 63
Query: 93 MFLRGDSVIIV 103
+ +RGDS++ +
Sbjct: 64 VLVRGDSIVAI 74
>gi|340344218|ref|ZP_08667350.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519359|gb|EGP93082.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 76
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 15/77 (19%)
Query: 27 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 86
+MS + +L+ RNNK + G ++ FD H N+ LE+ ++ GK K
Sbjct: 8 LMSNNKDKVILLRLRNNKSVRGNLQDFDVHMNLTLEDAEDI-----SDGKTVK------- 55
Query: 87 DRFISKMFLRGDSVIIV 103
+ K+ LRGD+++ V
Sbjct: 56 ---LGKILLRGDNILAV 69
>gi|168061084|ref|XP_001782521.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168061116|ref|XP_001782537.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066445|ref|XP_001785148.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663270|gb|EDQ50044.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666006|gb|EDQ52673.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666022|gb|EDQ52689.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 145
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGK 76
N ++ + ++ ++L+G+ AFDRH N+VL + E+ PK GK
Sbjct: 14 NWRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEELRRVPPKKGK 57
>gi|297618799|ref|YP_003706904.1| small nuclear riboprotein-like protein [Methanococcus voltae A3]
gi|297377776|gb|ADI35931.1| Like-Sm ribonucleoprotein core [Methanococcus voltae A3]
Length = 69
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELP 72
PL L S+ NT + + ++ K++ GR++A+D H N+ LEN + E P
Sbjct: 7 PLDALGKSI--NTNITVFLKDGKEIKGRLKAYDLHMNVALENAKFEEKEYP 55
>gi|193582435|ref|XP_001943900.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm11-like
[Acyrthosiphon pisum]
Length = 217
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGR----VRAFDRHCNMVLENVREMWTELPKTGK 76
GPLS + + +V + R+ + G + AFD+H N+V+++V E+WT K
Sbjct: 107 GPLSRIALFCYAKKRVKVYIRSAVSVRGHCEGYIIAFDKHWNLVMDDVDEVWTR-----K 161
Query: 77 GKKKALPVNKDR 88
K K+L + R
Sbjct: 162 NKYKSLAIGDAR 173
>gi|85090627|ref|XP_958507.1| hypothetical protein NCU09512 [Neurospora crassa OR74A]
gi|28919876|gb|EAA29271.1| predicted protein [Neurospora crassa OR74A]
Length = 168
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
V + R +++L GR+ A+D HCN+VL V E
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGEVEE 56
>gi|380493327|emb|CCF33959.1| LSM domain-containing protein [Colletotrichum higginsianum]
Length = 96
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
V + R +++L GR+ A+D HCN+VL V E
Sbjct: 26 VFVKLRGDRELKGRLHAYDSHCNLVLGEVEE 56
>gi|224011573|ref|XP_002295561.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|209583592|gb|ACI64278.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 414
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 16 EEFNTGPLSVLMMSVKNNTQVLINCRN----NKKLLGRVRAFDRHCNMVLENVREMWT 69
E N+GPLS+L + N +V + R L G + AFD+H NM+L++V E+++
Sbjct: 213 EHKNSGPLSLLYSILANRQRVRVMVRYVDCVRGTLTGYLIAFDKHFNMILKDVDEVYS 270
>gi|388579060|gb|EIM19389.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 179
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++ + + ++L+G++ AFDRH N+VL + E + L G + +P R +
Sbjct: 16 NYRLRVTLNDTRQLVGQMLAFDRHMNLVLVDTIE-FRRL--KGPSSQGDIPKEMKRALGL 72
Query: 93 MFLRGDSVIIV 103
+ LRG+++I +
Sbjct: 73 IVLRGETIISI 83
>gi|407461730|ref|YP_006773047.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus koreensis
AR1]
gi|407045352|gb|AFS80105.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus koreensis
AR1]
Length = 78
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 14/75 (18%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N VLI + NK + G + FD+H N++L++ E+ E G K L
Sbjct: 15 NQVVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEIPAE------GDSKGL--------GT 60
Query: 93 MFLRGDSVIIVLRNP 107
+ +RGD+V+++ P
Sbjct: 61 IVVRGDNVVMISPPP 75
>gi|170291130|ref|YP_001737946.1| like-Sm ribonucleoprotein core [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170175210|gb|ACB08263.1| Like-Sm ribonucleoprotein core [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 78
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 14/82 (17%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PLS L S + +V + +N +++G++ +D N+VL++ RE+ P +G+ K
Sbjct: 8 PLSHLKKS--HGAEVTVRLKNGSQIVGKLIVYDEMMNLVLDSAREVD---PASGEVK--- 59
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
R + +F+RG++V+ V
Sbjct: 60 ------RSVGTLFIRGNNVLFV 75
>gi|449019835|dbj|BAM83237.1| U6 snRNA-associated Sm-like protein LSm3 [Cyanidioschyzon merolae
strain 10D]
Length = 102
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/77 (18%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 27 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 86
++ + + +V + + +++L+G + A+D+H N+++ + E + + + + + +
Sbjct: 16 LLRIALDERVFVKLKGDRELVGTLHAYDQHLNLIISDAEETLQK-AELDEETYEQIVRQE 74
Query: 87 DRFISKMFLRGDSVIIV 103
R + +++RGD+V +V
Sbjct: 75 RRKLQLVYVRGDTVFLV 91
>gi|408404869|ref|YP_006862852.1| small nuclear ribonucleoprotein [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365465|gb|AFU59195.1| putative small nuclear ribonucleoprotein [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 76
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
VLI + K + G + FD+H N++LE+ E+ E K + + +
Sbjct: 18 VLIKLKGGKVIRGNLHGFDQHMNLLLEDSVEILEE--------------GKSNDLGTIVV 63
Query: 96 RGDSVIIVLRNPK 108
RGD+V+I+ PK
Sbjct: 64 RGDNVVIISPPPK 76
>gi|302849879|ref|XP_002956468.1| hypothetical protein VOLCADRAFT_107252 [Volvox carteri f.
nagariensis]
gi|300258166|gb|EFJ42405.1| hypothetical protein VOLCADRAFT_107252 [Volvox carteri f.
nagariensis]
Length = 297
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++ + ++++++GR AFDRH N+VL + E PK GK +++ + R +
Sbjct: 14 NFRMRVTLVDSRQIVGRFMAFDRHMNLVLGDSEEFRRLPPKKGKSEEER---EERRVLGL 70
Query: 93 MFLRGDSVI 101
+ LRG+ +I
Sbjct: 71 VLLRGEEII 79
>gi|424811999|ref|ZP_18237239.1| small nuclear ribonucleoprotein [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756221|gb|EGQ39804.1| small nuclear ribonucleoprotein [Candidatus Nanosalinarum sp.
J07AB56]
Length = 75
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 17/85 (20%)
Query: 19 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGK 78
N PL VL T V+I ++ + G +RAFD H NM L++ KTG+
Sbjct: 5 NARPLDVL--GDARGTNVMIELKDETVVSGTLRAFDSHLNMWLDDA-------SKTGEDG 55
Query: 79 KKALPVNKDRFISKMFLRGDSVIIV 103
++ K+ +RGD+V+ V
Sbjct: 56 REDF--------GKILIRGDNVVHV 72
>gi|298714462|emb|CBJ27484.1| Small nuclear ribonucleoprotein-associated protein B [Ectocarpus
siliculosus]
Length = 217
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD----R 88
N ++ I + + L+G + AFDRH N+VL + E PK KG + A ++++ R
Sbjct: 14 NYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRRFKPK--KGSEAAAGIHEEREEKR 71
Query: 89 FISKMFLRGDSV 100
+ + LRG++V
Sbjct: 72 VLGLVLLRGENV 83
>gi|213407672|ref|XP_002174607.1| U6 snRNP-associated protein Lsm3 [Schizosaccharomyces japonicus
yFS275]
gi|212002654|gb|EEB08314.1| U6 snRNP-associated protein Lsm3 [Schizosaccharomyces japonicus
yFS275]
Length = 90
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
+ +V + R +++L GR+ NMVL + E+ T + G +P +
Sbjct: 19 DERVHVKLRGDRELFGRLH------NMVLGDAEEVITSVEDLVTGTVDGIPKTIRKHSEM 72
Query: 93 MFLRGDSVIIV 103
+F+RGDSVI++
Sbjct: 73 LFVRGDSVILI 83
>gi|328773803|gb|EGF83840.1| hypothetical protein BATDEDRAFT_8283, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 213
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++ I ++ + +G++ AFD+H N+VL E PKT +++ + R +
Sbjct: 13 NHRLKITIQDGRTFIGQMLAFDKHMNLVLSECEEFRKIRPKTKSQQER----EEKRSLGL 68
Query: 93 MFLRGDSVI 101
+ LRG+++I
Sbjct: 69 VILRGETII 77
>gi|392589852|gb|EIW79182.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 178
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFIS 91
N ++ + + + +G++ AFDRH N+V+ E PK G+ + P + R +
Sbjct: 16 NWRLKVTINDGRAFIGQMLAFDRHMNLVIAECEEFRRVRPKKKAGETETPPEQEMKRTLG 75
Query: 92 KMFLRGDSVIIV 103
+ LRG++V+ +
Sbjct: 76 LVILRGETVVSI 87
>gi|426198547|gb|EKV48473.1| hypothetical protein AGABI2DRAFT_203319 [Agaricus bisporus var.
bisporus H97]
Length = 93
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 14/86 (16%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW----TELPKTGKG 77
P ++ +S+ +V + R +++L G + A+D H N++L +V E TE +T
Sbjct: 12 PFDLIRLSLSE--RVFVKLRGDRELSGILHAYDGHMNLILSDVEETVMIVDTESNQTTNY 69
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIV 103
K+ + +F+RGD VI+V
Sbjct: 70 AKRKWEM--------LFVRGDGVILV 87
>gi|323650499|gb|ADX97330.1| small nuclear ribonucleoprotein [Mangifera indica]
Length = 128
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 6/51 (11%)
Query: 28 MSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN------VREMWTELP 72
++ + ++L+ R+N+KLLG +R+FD+ N+VLE V +++ ++P
Sbjct: 15 LATYLDKKILVLLRDNRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIP 65
>gi|452824595|gb|EME31597.1| small nuclear ribonucleoprotein B and B' [Galdieria sulphuraria]
Length = 214
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 17/84 (20%)
Query: 28 MSVKNNTQVL--INCR------NNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 79
M+V N+++L IN R + + ++G++ AFD+H N+VL + E + +L K K +K
Sbjct: 1 MAVPRNSKLLQYINYRLRVSLDDQRVIVGQLLAFDKHLNLVLNDCEE-FRKLKKQDKEEK 59
Query: 80 KALPVNKDRFISKMFLRGDSVIIV 103
+AL + LRG+SVI +
Sbjct: 60 RAL--------GLVLLRGESVITM 75
>gi|429216595|ref|YP_007174585.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM 15908]
gi|429133124|gb|AFZ70136.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM 15908]
Length = 79
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 15/71 (21%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N+ VL+ + N+++ G + ++D+H N++LE E+ +GK R +
Sbjct: 20 NSSVLVKMKGNREVKGILTSYDQHLNLILEKAEEL--------EGK-------VSRPLGL 64
Query: 93 MFLRGDSVIIV 103
+ LRGD+VI V
Sbjct: 65 VLLRGDNVIAV 75
>gi|393222057|gb|EJD07541.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 183
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFIS 91
N ++ I + + L G++ AFDRH N+VL + E K G++ P + R +
Sbjct: 16 NWRLKITLNDGRALTGQMLAFDRHMNLVLADCEEFRRVRAKKKAGEEGPAPEQEIKRSLG 75
Query: 92 KMFLRGDSVI 101
+ LRG+SV+
Sbjct: 76 LVILRGESVV 85
>gi|116753552|ref|YP_842670.1| small nuclear ribonucleoprotein [Methanosaeta thermophila PT]
gi|116665003|gb|ABK14030.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
thermophila PT]
Length = 71
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 17/82 (20%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L S+ N+ V++ ++ + G ++ +D H N+VLEN E+ G +K
Sbjct: 5 PLDILNESL--NSPVIVRLKDGRAFRGELQGYDIHMNLVLENTEEI-----AEGTARK-- 55
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
I + +RGD+V+ +
Sbjct: 56 --------IGAVIVRGDNVVYI 69
>gi|340344088|ref|ZP_08667220.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519229|gb|EGP92952.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 78
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N VLI + K + G + FD+H N++L++ E+ TE G K+L
Sbjct: 15 NQIVLIKLKGGKTIRGNLLGFDQHMNLLLDSSEEIPTE------GNSKSL--------GT 60
Query: 93 MFLRGDSVIIVLRNP 107
+ +RGD+V+++ P
Sbjct: 61 IVVRGDNVVMISPPP 75
>gi|353242927|emb|CCA74526.1| related to small nuclear ribonucleoprotein associated protein b
[Piriformospora indica DSM 11827]
Length = 163
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 38 INCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMFLR 96
+ +N++L+G++ AFDRH N+VL + E K +A+P + R + + LR
Sbjct: 11 VTLNDNRQLVGQMLAFDRHMNLVLADCEEFRRVKQKKKSADDEAVPSQELKRSLGLVILR 70
Query: 97 GDSVI 101
G+ ++
Sbjct: 71 GEMIV 75
>gi|353237452|emb|CCA69424.1| related to LSM1-Sm-like (Lsm) protein [Piriformospora indica DSM
11827]
Length = 136
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
+ +VL+ R+ +KL+G +R++D+ N+VLE E +K P + +
Sbjct: 18 DKKVLVILRDGRKLIGVLRSYDQFANLVLEGTIE-----------RKHLGPYFAELPVGV 66
Query: 93 MFLRGDSVIIV 103
M +RG++V+++
Sbjct: 67 MVIRGENVVLL 77
>gi|313215037|emb|CBY41217.1| unnamed protein product [Oikopleura dioica]
Length = 69
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 79
+++ I RN+K+++G + FD NMVLE+V TE T GKK
Sbjct: 16 GSRIHIIMRNDKEIVGTLLGFDEFVNMVLEDV----TEYEATSDGKK 58
>gi|403221959|dbj|BAM40091.1| small nuclear ribonucleoprotein associated protein b [Theileria
orientalis strain Shintoku]
Length = 153
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
V + ++N+K +G + AFDRH N+VL + E L GK K + R + + L
Sbjct: 16 VRVTLKDNRKFVGTLVAFDRHMNLVLSDCEEFRMTL---GKDKNR---TEIKRTLGFVLL 69
Query: 96 RGDSVI 101
RG++++
Sbjct: 70 RGENIV 75
>gi|449067225|ref|YP_007434307.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449069496|ref|YP_007436577.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
gi|449035733|gb|AGE71159.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449038004|gb|AGE73429.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
Length = 73
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 14/71 (19%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
+ VL+ + K + G ++++D H N+VLEN E+ + R +
Sbjct: 14 GSTVLVKLKGEKIVRGTLKSYDMHMNLVLENSEEIMND--------------GSTRKVGT 59
Query: 93 MFLRGDSVIIV 103
+ +RGD+VI+V
Sbjct: 60 IVIRGDNVILV 70
>gi|359477805|ref|XP_003632024.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 2
[Vitis vinifera]
Length = 88
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGK 76
+++ + + +K+L+G +R FD + NMVLE+V E ++E+ G+
Sbjct: 19 GSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTE-YSEITSEGR 61
>gi|171689342|ref|XP_001909611.1| hypothetical protein [Podospora anserina S mat+]
gi|170944633|emb|CAP70744.1| unnamed protein product [Podospora anserina S mat+]
Length = 193
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 32 NNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFIS 91
+ +++I+ R+ +KL+G +R++D+ N+VL++ +E P + + + + DR
Sbjct: 63 TDKKLMISLRDGRKLIGILRSWDQFANLVLQSTKERIFVPPVLSEKEPTGIFADIDR--G 120
Query: 92 KMFLRGDSVIIV 103
+RG++V+++
Sbjct: 121 TFLVRGENVLLL 132
>gi|119174705|ref|XP_001239694.1| hypothetical protein CIMG_09315 [Coccidioides immitis RS]
Length = 108
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 61
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL
Sbjct: 15 PLDLVRLSL--DEIVFVKLRGDRELKGRLHAYDSHCNLVL 52
>gi|408381788|ref|ZP_11179336.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
gi|407815719|gb|EKF86289.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
Length = 80
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 16/82 (19%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL VL ++ N+QVLI + ++ G + +FD H N+VL + E+ ++G+ ++
Sbjct: 12 PLDVLGRAL--NSQVLIKLKGGREFRGVLESFDMHMNLVLNDAEEL-----ESGESSRR- 63
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ + +RGD+++ +
Sbjct: 64 --------LGVVLIRGDNIVYI 77
>gi|321262987|ref|XP_003196212.1| hypothetical Protein CGB_I3560W [Cryptococcus gattii WM276]
gi|317462687|gb|ADV24425.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 197
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 38 INCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG--KKKALPVNKDRFISKMFL 95
+ + + L+G++ A+D+H N VL E T K KG + A + R + + L
Sbjct: 11 VTLNDGRSLVGQMLAYDKHMNFVLAECEEFRTVKAKKAKGSSSEPAPTTQQKRTLGLVIL 70
Query: 96 RGDSVIIV 103
RG++++ V
Sbjct: 71 RGETIVSV 78
>gi|167043902|gb|ABZ08590.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG3H9]
gi|167044597|gb|ABZ09270.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG7F11]
Length = 76
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N VLI + NK + G + FD+H N++L+ E+ ++ G +L
Sbjct: 15 NKTVLIKLKGNKTIRGNLLGFDQHMNLLLDQAEEILSD------GDSNSL--------GS 60
Query: 93 MFLRGDSVIIV 103
+ +RGD+V+++
Sbjct: 61 LVVRGDNVVMI 71
>gi|321466061|gb|EFX77059.1| hypothetical protein DAPPUDRAFT_305959 [Daphnia pulex]
Length = 234
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVL---ENVREMWTELPKTGKGKKKALPVNKDRF 89
N +V + ++++ +G +AFD+H N++L E R++ ++ K+G G + + R
Sbjct: 14 NYRVRVTLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKAKINKSGVGATER---EEKRV 70
Query: 90 ISKMFLRGDSVI 101
+ + LRG++++
Sbjct: 71 LGLVLLRGENIV 82
>gi|399217788|emb|CCF74675.1| unnamed protein product [Babesia microti strain RI]
Length = 138
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N +V + ++N++ +G AFDRH N+VL + E + + K K+ PV R +
Sbjct: 12 NYRVRVIIKDNRRFIGVFIAFDRHMNLVLADCEE-YRMIKKQPSDKE---PVEIKRTLGF 67
Query: 93 MFLRGDSVI 101
+ LRG++V+
Sbjct: 68 VLLRGENVV 76
>gi|70606993|ref|YP_255863.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM 639]
gi|68567641|gb|AAY80570.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM 639]
Length = 79
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 14/71 (19%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
+ VL+ + K + G ++++D H N+VLEN E+ + R +
Sbjct: 20 GSTVLVKLKGEKIVRGTLKSYDMHMNLVLENSEEIMND--------------GSTRKVGT 65
Query: 93 MFLRGDSVIIV 103
+ +RGD+VI+V
Sbjct: 66 IVIRGDNVILV 76
>gi|313240518|emb|CBY32850.1| unnamed protein product [Oikopleura dioica]
Length = 86
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 79
+++ I RN+K+++G + FD NMVLE+V TE T GKK
Sbjct: 16 GSRIHIIMRNDKEIVGTLLGFDEFVNMVLEDV----TEYEATSDGKK 58
>gi|150399222|ref|YP_001322989.1| small nuclear riboprotein-like protein [Methanococcus vannielii SB]
gi|150011925|gb|ABR54377.1| Like-Sm ribonucleoprotein core [Methanococcus vannielii SB]
Length = 72
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 18/82 (21%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL L S+ NT V + ++ K + GR++A+D H N+ LEN K ++K
Sbjct: 7 PLDALGKSI--NTNVTVYLKDGKLVKGRLKAYDLHMNVALEN--------AKIESDEEKE 56
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
P+ + +RGD+V+ V
Sbjct: 57 FPM--------LVVRGDNVLYV 70
>gi|313213177|emb|CBY37031.1| unnamed protein product [Oikopleura dioica]
gi|313226437|emb|CBY21582.1| unnamed protein product [Oikopleura dioica]
Length = 86
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 79
+++ I RN+K+++G + FD NMVLE+V TE T GKK
Sbjct: 16 GSRIHIIMRNDKEIVGTLLGFDEFVNMVLEDV----TEYEATSDGKK 58
>gi|145590308|ref|YP_001152310.1| like-Sm ribonucleoprotein, core [Pyrobaculum arsenaticum DSM
13514]
gi|379005411|ref|YP_005261083.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
gi|145282076|gb|ABP49658.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
arsenaticum DSM 13514]
gi|375160864|gb|AFA40476.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
Length = 80
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 35 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
QVL+ R++ ++ G +R+FD+H N++LE+ E+
Sbjct: 23 QVLVKLRDSHEIRGVLRSFDQHVNLLLEDAEEI 55
>gi|444318293|ref|XP_004179804.1| hypothetical protein TBLA_0C04890 [Tetrapisispora blattae CBS 6284]
gi|387512845|emb|CCH60285.1| hypothetical protein TBLA_0C04890 [Tetrapisispora blattae CBS 6284]
Length = 180
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 11/88 (12%)
Query: 28 MSVKNNTQV--LINCR------NNKKLLGRVRAFDRHCNMVLENVREMW---TELPKTGK 76
+SVK+N+++ LIN + ++K +G + +FD H N++L N E T+LPK
Sbjct: 4 ISVKHNSRLSHLINYKIRVITIDDKVYIGELLSFDNHMNLILNNCIEQRIPKTQLPKLKD 63
Query: 77 GKKKALPVNKDRFISKMFLRGDSVIIVL 104
K K + R + + LRGD ++ +
Sbjct: 64 LKSKDSIRIEKRTLGLIILRGDQILTTM 91
>gi|340520073|gb|EGR50310.1| predicted protein [Trichoderma reesei QM6a]
Length = 75
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
N V + R +++L G++ A+D HCN+VL V E
Sbjct: 13 NEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEE 46
>gi|242019279|ref|XP_002430089.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Pediculus humanus corporis]
gi|212515170|gb|EEB17351.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Pediculus humanus corporis]
Length = 187
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++ I ++++ +G +AFD+H N++L + E PK K ++ ++ R +
Sbjct: 6 NYRIRITLQDSRTFIGTFKAFDKHMNLILGDCEEFRRTKPKNSKEAER----DEKRSLGF 61
Query: 93 MFLRGDSVI 101
+ LRG +++
Sbjct: 62 VLLRGQNIV 70
>gi|391336578|ref|XP_003742656.1| PREDICTED: uncharacterized protein LOC100908975 [Metaseiulus
occidentalis]
Length = 406
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 1 MSSRPMEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKK----LLGRVRAFDRH 56
MS+R + + +++ GP+S+L ++ N +V + R++ L G V AFD+H
Sbjct: 106 MSARKKQHTVLTKISDQWTRGPISILHKALTNKLRVKVWVRSHSTVRSILTGFVAAFDKH 165
Query: 57 CNMVLENVRE 66
N+ L +V E
Sbjct: 166 LNLALVDVDE 175
>gi|347522771|ref|YP_004780341.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
gi|343459653|gb|AEM38089.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
Length = 75
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 14/68 (20%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
VL+ R + + G++++FD+H N+VLE E+ ++ R + + +
Sbjct: 17 VLVKLRGDIVVRGKLKSFDQHLNLVLEEAEEIKSD--------------GSTRKLGTLVI 62
Query: 96 RGDSVIIV 103
RGD+V+++
Sbjct: 63 RGDNVVLI 70
>gi|261189603|ref|XP_002621212.1| LSM domain-containing protein [Ajellomyces dermatitidis SLH14081]
gi|239591448|gb|EEQ74029.1| LSM domain-containing protein [Ajellomyces dermatitidis SLH14081]
gi|239613021|gb|EEQ90008.1| LSM domain-containing protein [Ajellomyces dermatitidis ER-3]
Length = 113
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 19/97 (19%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVR---------------AFDRHCNMVLENVRE 66
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 15 PLDLVRLSL--DEVVFVKLRGDRELKGRLHVSGSGIPAIVVDLRMAYDSHCNLVLGDVEE 72
Query: 67 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 103
+ + ++ + K +F+RGDSV+++
Sbjct: 73 TIYIVEEDESEQEIIKTIKKQE--EMLFVRGDSVVLI 107
>gi|398397489|ref|XP_003852202.1| hypothetical protein MYCGRDRAFT_104520 [Zymoseptoria tritici
IPO323]
gi|339472083|gb|EGP87178.1| hypothetical protein MYCGRDRAFT_104520 [Zymoseptoria tritici
IPO323]
Length = 99
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 27 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 86
++ + Q+ + + ++ G++R FD N+V++ E+ + GKG+ +A ++
Sbjct: 23 LLQQHSTVQIWLYEQLGIRIEGKIRGFDEFMNLVIDEA----VEVKQPGKGQTEADVKDQ 78
Query: 87 DRFISKMFLRGDSVIIV 103
R + ++ L+GD+V ++
Sbjct: 79 RRELGQILLKGDNVCLI 95
>gi|329765753|ref|ZP_08257322.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329137819|gb|EGG42086.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 76
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 15/77 (19%)
Query: 27 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 86
+M+ N +L+ RNNK + G ++ FD H N+ L+N ++ NK
Sbjct: 8 LMTNNKNKVILLRLRNNKSVRGSLQDFDIHMNLTLDNAEDISD---------------NK 52
Query: 87 DRFISKMFLRGDSVIIV 103
+ ++ LRGD+++ V
Sbjct: 53 VVSLGRILLRGDNILAV 69
>gi|14277786|pdb|1I8F|A Chain A, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277787|pdb|1I8F|B Chain B, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277788|pdb|1I8F|C Chain C, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277789|pdb|1I8F|D Chain D, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277790|pdb|1I8F|E Chain E, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277791|pdb|1I8F|F Chain F, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277792|pdb|1I8F|G Chain G, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|29726402|pdb|1LNX|A Chain A, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726403|pdb|1LNX|B Chain B, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726404|pdb|1LNX|C Chain C, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726405|pdb|1LNX|D Chain D, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726406|pdb|1LNX|E Chain E, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726407|pdb|1LNX|F Chain F, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726408|pdb|1LNX|G Chain G, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
Length = 81
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 35 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
QVL+ R++ ++ G +R+FD+H N++LE+ E+
Sbjct: 23 QVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI 55
>gi|331212255|ref|XP_003307397.1| small nuclear ribonucleoprotein E [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309297800|gb|EFP74391.1| small nuclear ribonucleoprotein E [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 98
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNK--KLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 79
P++V+ ++ V I +N +L G++ FD N+VL+N E+W + K G +
Sbjct: 12 PINVIFKHLQAGQLVHIWLYDNTEFRLEGKIIGFDEFMNVVLDNASEVWVK-SKKGTPHR 70
Query: 80 KALPVNKDRFISKMFLRGDSVIIV 103
+A+ + ++ L+G+++ ++
Sbjct: 71 EAVEKGARVSLGRLLLKGENITLI 94
>gi|18312179|ref|NP_558846.1| small nuclear ribonucleoprotein (Sm-like) [Pyrobaculum aerophilum
str. IM2]
gi|18159615|gb|AAL63028.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum
aerophilum str. IM2]
Length = 80
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 35 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
QVL+ R++ ++ G +R+FD+H N++LE+ E+
Sbjct: 23 QVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI 55
>gi|448080005|ref|XP_004194518.1| Piso0_005017 [Millerozyma farinosa CBS 7064]
gi|359375940|emb|CCE86522.1| Piso0_005017 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 19 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGK 78
N PL V+ S+ + +VL+ N K+ G + FD + N+VLENV E + +GK
Sbjct: 17 NILPLEVIDKSIGHKIRVLLT--NTKEFHGTLVGFDDYVNVVLENVEEFDGD-ASSGKIV 73
Query: 79 KKAL 82
KK L
Sbjct: 74 KKML 77
>gi|241959080|ref|XP_002422259.1| small nuclear ribonucleoprotein-associated protein, putative
[Candida dubliniensis CD36]
gi|223645604|emb|CAX40263.1| small nuclear ribonucleoprotein-associated protein, putative
[Candida dubliniensis CD36]
Length = 125
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 37 LINCR------NNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKAL---PVNKD 87
LIN R +N+ LG + +FD+H N+VL + E + KK PV +
Sbjct: 19 LINFRIKIITIDNRTYLGTLLSFDKHMNLVLSDTEESRITKKSYSQLKKHTPNVEPVYEK 78
Query: 88 RFISKMFLRGDSVI 101
R + + LRGD V+
Sbjct: 79 RNLGLIILRGDQVV 92
>gi|383320750|ref|YP_005381591.1| Small nuclear ribonucleoprotein, LSM family [Methanocella conradii
HZ254]
gi|379322120|gb|AFD01073.1| Small nuclear ribonucleoprotein, LSM family [Methanocella conradii
HZ254]
Length = 72
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 16/82 (19%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL VL ++ N+ V++ + ++ G ++ +D H N+VLEN E+
Sbjct: 5 PLDVLNDAL--NSPVIVRLKGGREFRGELQGYDMHMNLVLENAEELKEN----------- 51
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ R + + +RGD+V+ V
Sbjct: 52 ---EESRKLGTIIVRGDTVVYV 70
>gi|45358711|ref|NP_988268.1| small nuclear ribonucleoprotein [Methanococcus maripaludis S2]
gi|340624470|ref|YP_004742923.1| small nuclear ribonucleoprotein [Methanococcus maripaludis X1]
gi|45047577|emb|CAF30704.1| Small nuclear ribonucleoprotein (Sm protein) [Methanococcus
maripaludis S2]
gi|339904738|gb|AEK20180.1| small nuclear ribonucleoprotein [Methanococcus maripaludis X1]
Length = 72
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 18/82 (21%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL L S+ NT V + ++ K + GR++A+D H N+ LEN K ++K
Sbjct: 7 PLDALGKSI--NTNVTVYLKDGKVVKGRLKAYDLHMNVALEN--------AKIENDEEKE 56
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
P+ + +RGD+V+ V
Sbjct: 57 FPM--------LVVRGDNVLYV 70
>gi|118778178|ref|XP_308499.3| AGAP007326-PB [Anopheles gambiae str. PEST]
gi|116132258|gb|EAA04750.4| AGAP007326-PB [Anopheles gambiae str. PEST]
Length = 257
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRA----FDRHCNMVLENVREMWT 69
GPL L ++ +V ++ R K + G V FD+H N+ L +V E WT
Sbjct: 123 GPLGQLQRWMEGRNRVRVSIRKQKGVRGHVSGVLELFDKHWNLALSDVCETWT 175
>gi|158285862|ref|XP_001687956.1| AGAP007326-PA [Anopheles gambiae str. PEST]
gi|157020193|gb|EDO64605.1| AGAP007326-PA [Anopheles gambiae str. PEST]
Length = 267
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRA----FDRHCNMVLENVREMWT 69
GPL L ++ +V ++ R K + G V FD+H N+ L +V E WT
Sbjct: 123 GPLGQLQRWMEGRNRVRVSIRKQKGVRGHVSGVLELFDKHWNLALSDVCETWT 175
>gi|168063950|ref|XP_001783930.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664560|gb|EDQ51275.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 356
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 16 EEFNTGPLSVLMMSVKNNTQVLINCRNNK----KLLGRVRAFDRHCNMVLENVREMWT 69
++ GPL +L+ + ++ + R+ ++G VRA D+H NMVL +V E ++
Sbjct: 209 DKIRQGPLGLLVRCYEERARIQVWTRHTHGIRGTMVGFVRALDKHFNMVLHDVDEQYS 266
>gi|16082245|ref|NP_394696.1| small nuclear ribonucleoprotein [Thermoplasma acidophilum DSM 1728]
gi|11387090|sp|P57670.1|RUXX_THEAC RecName: Full=Putative snRNP Sm-like protein
gi|10640586|emb|CAC12364.1| small nuclear ribonucleoprotein related protein [Thermoplasma
acidophilum]
Length = 83
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 19 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGK 78
N P+ VL ++ N VLI+ + N++ G + +D + N+VL+N E+ G+
Sbjct: 7 NVKPMDVLKSALSRN--VLIDVKGNREYSGILEGYDVYMNIVLQNASEIIN-------GE 57
Query: 79 KKALPVNKDRFISKMFLRGDSVIIV 103
K + ++ +RGD+VI V
Sbjct: 58 NKGV-------YDRVLVRGDNVIFV 75
>gi|325959826|ref|YP_004291292.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
gi|325331258|gb|ADZ10320.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
Length = 80
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
PL VL S+ N+QVLI + ++ G +++FD H N+VL E+
Sbjct: 12 PLDVLGKSL--NSQVLIELKGGREFRGLLKSFDMHMNLVLNEAEEL 55
>gi|389860536|ref|YP_006362775.1| Like-Sm ribonucleoprotein, core [Thermogladius cellulolyticus 1633]
gi|388525439|gb|AFK50637.1| Like-Sm ribonucleoprotein, core [Thermogladius cellulolyticus 1633]
Length = 76
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 14/68 (20%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
VLI + + G++R++D+H N+VL++ E+ G G + L + +
Sbjct: 18 VLIKMKGEVSIRGKLRSYDQHLNIVLDDAEEVR------GDGSSRKL--------GTLVI 63
Query: 96 RGDSVIIV 103
RGD+V+++
Sbjct: 64 RGDTVVLI 71
>gi|126465841|ref|YP_001040950.1| LSM family small nuclear ribonucleoprotein [Staphylothermus marinus
F1]
gi|126014664|gb|ABN70042.1| Small nuclear ribonucleoprotein, LSM family [Staphylothermus
marinus F1]
Length = 75
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 14/68 (20%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
VLI + +++ G+++++D+H N+VL++ E+ + R + + +
Sbjct: 17 VLIKLKGEREVRGKLKSYDQHLNIVLDDAEEIKED--------------GSTRKLGTIVI 62
Query: 96 RGDSVIIV 103
RGD+VI++
Sbjct: 63 RGDTVILI 70
>gi|440493439|gb|ELQ75911.1| Small Nuclear ribonucleoprotein G [Trachipleistophora hominis]
Length = 79
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
NT V + R KK LG++ D HCN++L+N E
Sbjct: 15 NTDVTLYMRKKKKYLGKLIGMDEHCNVLLDNAYE 48
>gi|326428499|gb|EGD74069.1| hypothetical protein PTSG_12357 [Salpingoeca sp. ATCC 50818]
Length = 212
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++ + + + L+G A+D+H NMVL + E +T K KK + R +
Sbjct: 14 NYRMRVTTEDGRMLVGTFMAYDKHMNMVLSDCEEF-----RTVKAKKGTDEQTQKRALGF 68
Query: 93 MFLRGDSVI 101
+ LRG++V+
Sbjct: 69 ILLRGENVV 77
>gi|409079690|gb|EKM80051.1| hypothetical protein AGABI1DRAFT_72874 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 93
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 14/86 (16%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW----TELPKTGKG 77
P ++ +S+ +V + R +++L G + A+D H N++L +V E TE +T
Sbjct: 12 PFDLIRLSLSE--RVFVKLRGDRELSGILHAYDGHMNLILSDVEETVMIVDTESNQTINY 69
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIV 103
K+ + +F+RGD VI+V
Sbjct: 70 AKRKWEM--------LFVRGDGVILV 87
>gi|84489967|ref|YP_448199.1| small nuclear ribonucleoprotein [Methanosphaera stadtmanae DSM
3091]
gi|84373286|gb|ABC57556.1| putative snRNP Sm-like protein [Methanosphaera stadtmanae DSM
3091]
Length = 81
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
PL L ++ N+QVLI + K+ G +++FD H N+VL + E+
Sbjct: 13 PLDALGQAL--NSQVLIKLKGGKEFRGALQSFDMHMNLVLNDAEEI 56
>gi|358253572|dbj|GAA53446.1| hypothetical protein CLF_110244 [Clonorchis sinensis]
Length = 315
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 21 GPLSVLMMSVKNNTQVLINCRN----NKKLLGRVRAFDRHCNMVLENVREM 67
GP++ L ++KN VL+ R L G + AFDR+ N+VL N E
Sbjct: 51 GPMARLWRAMKNTEPVLVMTRGLREPRASLTGNLVAFDRYWNLVLSNTTEY 101
>gi|209881614|ref|XP_002142245.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209557851|gb|EEA07896.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 155
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N +V + ++++ L+G + AFD+H N+VL + +E + + K G+ K+ R +
Sbjct: 6 NYRVRVTVQDDRMLVGNLMAFDKHMNVVLSDCQE-YRSIKKKGEDLKEV-----KRSLGF 59
Query: 93 MFLRGDSVIIV 103
+ LRG++++ +
Sbjct: 60 IVLRGENIVTI 70
>gi|238880160|gb|EEQ43798.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 110
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKAL---PVNKDRF 89
N ++ I +N+ LG + +FD+H N+VL + E + KK PV R
Sbjct: 6 NFRIKIITIDNRTYLGTLLSFDKHMNLVLSDTEESRITKKSYSQLKKHTPNVEPVYDKRN 65
Query: 90 ISKMFLRGDSVI 101
+ + LRGD V+
Sbjct: 66 LGLIILRGDQVV 77
>gi|159474956|ref|XP_001695589.1| Sm-E protein [Chlamydomonas reinhardtii]
gi|158275600|gb|EDP01376.1| Sm-E protein [Chlamydomonas reinhardtii]
Length = 95
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 79
+++ + + +K+++G +R FD + NMVLE+V TE+ T +GKK
Sbjct: 27 GSKMWVIMKGDKEIVGTLRGFDVYVNMVLEDV----TEIEDTPEGKK 69
>gi|322700593|gb|EFY92347.1| U6 snRNP-associated protein Lsm3 [Metarhizium acridum CQMa 102]
Length = 90
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
N V + R +++L G++ A+D HCN+VL V E
Sbjct: 23 NEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEE 56
>gi|410720309|ref|ZP_11359665.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
gi|410601091|gb|EKQ55611.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
Length = 100
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 16/82 (19%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL VL ++ N+QVLI + ++ G + +FD H N+VL + E+ ++G+ ++
Sbjct: 32 PLDVLGRAL--NSQVLIKLKGGREFRGVLESFDMHMNLVLNDAEEL-----ESGESSRR- 83
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ + +RGD+++ +
Sbjct: 84 --------LGVVLIRGDNIVYI 97
>gi|147921633|ref|YP_684550.1| small nuclear ribonucleoprotein [Methanocella arvoryzae MRE50]
gi|121685694|sp|Q0W8R9.1|RUXX_UNCMA RecName: Full=Putative snRNP Sm-like protein
gi|110619946|emb|CAJ35224.1| putative small nuclear ribonucleoprotein (snRNP) Sm-like protein
[Methanocella arvoryzae MRE50]
Length = 72
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 16/82 (19%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL VL ++ N+ V++ + ++ G ++ +D H N+VL+N E+ K + +K
Sbjct: 5 PLDVLNEAL--NSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEEL-----KENEASRK- 56
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ + +RGD+V+ V
Sbjct: 57 --------LGTIIVRGDTVVYV 70
>gi|134045481|ref|YP_001096967.1| hypothetical protein MmarC5_0437 [Methanococcus maripaludis C5]
gi|150402324|ref|YP_001329618.1| small nuclear riboprotein-like protein [Methanococcus maripaludis
C7]
gi|159905904|ref|YP_001549566.1| small nuclear riboprotein-like protein [Methanococcus maripaludis
C6]
gi|132663106|gb|ABO34752.1| Small nuclear ribonucleoprotein, LSM family [Methanococcus
maripaludis C5]
gi|150033354|gb|ABR65467.1| Like-Sm ribonucleoprotein core [Methanococcus maripaludis C7]
gi|159887397|gb|ABX02334.1| Like-Sm ribonucleoprotein core [Methanococcus maripaludis C6]
Length = 72
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 18/82 (21%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL L S+ NT V + ++ K + GR++A+D H N+ LEN K ++K
Sbjct: 7 PLDALGKSI--NTNVTVFLKDGKVVKGRLKAYDLHMNVALEN--------AKIENDEEKE 56
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
P+ + +RGD+V+ V
Sbjct: 57 FPM--------LVVRGDNVLYV 70
>gi|330835854|ref|YP_004410582.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
gi|329567993|gb|AEB96098.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
Length = 75
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 14/68 (20%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
VL+ + NK++ G ++++D+H N+VL + E+ N ++ + + +
Sbjct: 17 VLVKLKGNKEVRGYLKSYDQHMNLVLSDSVEIQNN--------------NDEKKMGTIVI 62
Query: 96 RGDSVIIV 103
RGD+VI++
Sbjct: 63 RGDNVILI 70
>gi|118398961|ref|XP_001031807.1| Sm protein [Tetrahymena thermophila]
gi|89286141|gb|EAR84144.1| Sm protein [Tetrahymena thermophila SB210]
Length = 159
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
+ +V + ++ + L+G AFD+H N+VL E PKT KG+ + R +
Sbjct: 12 DYRVRVTIQDGRMLVGTFLAFDKHLNLVLSETEEFRPIKPKT-KGEPER---QTKRILGL 67
Query: 93 MFLRGDSVIIV 103
+ +RG++++ +
Sbjct: 68 VIIRGENIVSI 78
>gi|386002644|ref|YP_005920943.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
gi|357210700|gb|AET65320.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
Length = 72
Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 16/82 (19%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L S+ N V++ ++ + G ++ +D H N+VL+N E+ + G+ KK
Sbjct: 5 PLDILNESL--NGPVIVKLKDGRAFRGELQGYDIHMNLVLDNTEEI-----REGEDSKK- 56
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ + +RGD+V+ +
Sbjct: 57 --------LGTVVVRGDNVVYI 70
>gi|326472667|gb|EGD96676.1| small nuclear ribonucleoprotein-associated protein B
[Trichophyton tonsurans CBS 112818]
Length = 187
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 35 QVLINCR------NNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
Q LIN R + +++ G++ AFD+H N+VL + E K+GKG + A
Sbjct: 10 QNLINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKKKSGKGGQAA 62
>gi|325190755|emb|CCA25247.1| small nuclear ribonucleoproteinassociated protein pu [Albugo
laibachii Nc14]
Length = 218
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 8/72 (11%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVL---ENVREMWTELPKTGKGKKKALPVNKDRF 89
N ++ + ++++ L+G AFD+H N+VL E R + ++L KT +++ + R+
Sbjct: 14 NYRMKVTLQDSRALVGYFMAFDKHMNIVLGDCEEFRTLKSKL-KTNVSEERV----EKRY 68
Query: 90 ISKMFLRGDSVI 101
+ + LRG+SV+
Sbjct: 69 LGLVLLRGESVV 80
>gi|224059779|ref|XP_002299989.1| predicted protein [Populus trichocarpa]
gi|224103927|ref|XP_002313247.1| predicted protein [Populus trichocarpa]
gi|118484238|gb|ABK93999.1| unknown [Populus trichocarpa]
gi|222847247|gb|EEE84794.1| predicted protein [Populus trichocarpa]
gi|222849655|gb|EEE87202.1| predicted protein [Populus trichocarpa]
Length = 88
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 79
+++ + + +K+L+G +R FD + NMVLE+V TE T +G++
Sbjct: 20 GSKIWVIMKGDKELVGTLRGFDVYVNMVLEDV----TEYEITAEGRR 62
>gi|403358102|gb|EJY78687.1| Multi-sensor hybrid histidine kinase [Oxytricha trifallax]
Length = 1140
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 16 EEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEL---- 71
EE G L ++ + N+Q LI+ NN +V+A ++ N++E++ L
Sbjct: 152 EELQKGELQEIIQACTKNSQSLISMVNNILDYAKVKAKKLELDLQPTNLKELFNNLIDMN 211
Query: 72 --PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 106
GK K AL +++D+F ++F+ + +L N
Sbjct: 212 QVKAKGKNLKLALQMDEDQFPEQLFIDQSRMTQILVN 248
>gi|282164954|ref|YP_003357339.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
gi|282157268|dbj|BAI62356.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
Length = 72
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 16/82 (19%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL VL ++ N+ V++ + ++ G ++ +D H N+VL+N E+ K + KK
Sbjct: 5 PLDVLNDAL--NSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEEL-----KENEESKK- 56
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ + +RGD+V+ V
Sbjct: 57 --------LGTIIVRGDTVVYV 70
>gi|296807120|ref|XP_002844176.1| SMB [Arthroderma otae CBS 113480]
gi|238843659|gb|EEQ33321.1| SMB [Arthroderma otae CBS 113480]
Length = 226
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 35 QVLINCR------NNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
Q LIN R + +++ G++ AFD+H N+VL + E K+GKG + A
Sbjct: 10 QNLINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKKKSGKGGQAA 62
>gi|298712246|emb|CBJ26697.1| Protein with LSm motif. Putative LSm11 [Ectocarpus siliculosus]
Length = 653
Score = 34.7 bits (78), Expect = 8.2, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 15/78 (19%)
Query: 7 EEDNVKNEEEEFN-----------TGPLSVLMMSVKNNTQVLINCRNNKKLLGR----VR 51
E D EE FN +GP S+L + N + + R + G +R
Sbjct: 294 EADPADFAEERFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIR 353
Query: 52 AFDRHCNMVLENVREMWT 69
AFDRH N++L +VRE +T
Sbjct: 354 AFDRHMNLLLVDVRENYT 371
>gi|332022693|gb|EGI62970.1| Small nuclear ribonucleoprotein-associated protein B [Acromyrmex
echinatior]
Length = 207
Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N +V I ++++ +G +AFD+H N++L + E PK K ++ + R +
Sbjct: 14 NYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPER----EEKRVLGF 69
Query: 93 MFLRGDSVI 101
+ LRG++++
Sbjct: 70 VLLRGENIV 78
>gi|327304287|ref|XP_003236835.1| small nuclear ribonucleoprotein SmB [Trichophyton rubrum CBS
118892]
gi|326459833|gb|EGD85286.1| small nuclear ribonucleoprotein SmB [Trichophyton rubrum CBS
118892]
Length = 226
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 35 QVLINCR------NNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
Q LIN R + +++ G++ AFD+H N+VL + E K+GKG + A
Sbjct: 10 QNLINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKKKSGKGGQAA 62
>gi|452980005|gb|EME79767.1| hypothetical protein MYCFIDRAFT_81234 [Pseudocercospora fijiensis
CIRAD86]
Length = 100
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 27 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 86
++ + Q+ + + ++ G++R FD N+V+++ E+ + GKG+ + ++
Sbjct: 24 LLQQHSTVQIWLYEQLGIRIEGKIRGFDEFMNLVIDDA----VEVKQPGKGETEEDVKDQ 79
Query: 87 DRFISKMFLRGDSVIIV 103
R + ++ L+GD+V ++
Sbjct: 80 RREVGQILLKGDNVCLI 96
>gi|315045376|ref|XP_003172063.1| SMB [Arthroderma gypseum CBS 118893]
gi|311342449|gb|EFR01652.1| SMB [Arthroderma gypseum CBS 118893]
Length = 207
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 35 QVLINCR------NNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
Q LIN R + +++ G++ AFD+H N+VL + E K+GKG + A
Sbjct: 10 QNLINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKKKSGKGGQAA 62
>gi|392574635|gb|EIW67771.1| hypothetical protein TREMEDRAFT_69713 [Tremella mesenterica DSM
1558]
Length = 93
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 22 PLSVLMMSVKNNTQVLINCR--NNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 79
P++V+ ++ +T++ I N ++ + FD N+VL+ E++ K GK
Sbjct: 10 PINVIFSHLQKHTRITIWLYDSNEFRIEAFIVGFDEFMNLVLDEAEEVYDCAAKPGK--- 66
Query: 80 KALPVNKDRFISKMFLRGDSVIIV 103
PV R + ++ L+GD++ ++
Sbjct: 67 ---PVKPRRELGRILLKGDNITLI 87
>gi|328699352|ref|XP_001945843.2| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Acyrthosiphon pisum]
Length = 235
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK-KALPVNKDRFIS 91
N +V + ++ + +G +AFD+H N++L + E + L + KG A P + R +
Sbjct: 47 NYRVRVTLQDFRMFIGTFKAFDKHMNLILADCEE-FRRLKRKAKGPTIPAEPRVEKRVLG 105
Query: 92 KMFLRGDSVIIV 103
+ LRG +++ +
Sbjct: 106 FILLRGQNIVSI 117
>gi|298674160|ref|YP_003725910.1| Sm ribonucleoprotein-like protein [Methanohalobium evestigatum
Z-7303]
gi|298287148|gb|ADI73114.1| Like-Sm ribonucleoprotein core [Methanohalobium evestigatum Z-7303]
Length = 72
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 16/82 (19%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L ++ NT V++ R +++ G ++ +D H N+VL+N E+ G+ +K
Sbjct: 5 PLDILNNAL--NTPVIVRLRGSREFRGELQGYDVHMNLVLDNAEEL-----NDGEIVRK- 56
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ + +RGD+V+ V
Sbjct: 57 --------LGSVVIRGDNVVYV 70
>gi|326521412|dbj|BAJ96909.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 264
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKT 74
N ++ + ++ ++L+G+ AFDRH N+VL + E + +LP +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPS 54
>gi|260819010|ref|XP_002604675.1| hypothetical protein BRAFLDRAFT_94837 [Branchiostoma floridae]
gi|229290003|gb|EEN60686.1| hypothetical protein BRAFLDRAFT_94837 [Branchiostoma floridae]
Length = 219
Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 28 MSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD 87
M N ++ + ++++ +G +AFD+H N++L + E PK+ K +++ +
Sbjct: 9 MQAHLNYRMRVTLQDSRVFIGTFKAFDKHMNLILVDCDEFRKIRPKSQKQEER----EEK 64
Query: 88 RFISKMFLRGDSVI 101
R + + LRG++++
Sbjct: 65 RVLGLVLLRGENIV 78
>gi|333656537|gb|AEF68171.1| Sm-E-like protein [Physarum polycephalum]
Length = 90
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 49/87 (56%), Gaps = 15/87 (17%)
Query: 20 TGPLSVLMMSVKNNT--QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
T P++++ ++N + Q+ + +N+ ++ GR+ FD + N+VL++ E++ + K
Sbjct: 13 TQPINLIFRYLQNKSRIQIWLYEQNDVRIEGRIIGFDEYMNLVLDDADEIFVK-----KN 67
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVL 104
KK L ++ L+GD++ +++
Sbjct: 68 TKKHL--------GRILLKGDNITLMM 86
>gi|329765899|ref|ZP_08257464.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|393795327|ref|ZP_10378691.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
BG20]
gi|329137605|gb|EGG41876.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 78
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 14/76 (18%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N VLI + K + G + FD+H N++L++ E+ E G K+L
Sbjct: 15 NQIVLIKLKGGKTIRGNLLGFDQHMNLLLDSSEEIPVE------GNSKSL--------GT 60
Query: 93 MFLRGDSVIIVLRNPK 108
+ +RGD+V+++ P
Sbjct: 61 IVVRGDNVVMISPPPA 76
>gi|386875165|ref|ZP_10117354.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
gi|386807044|gb|EIJ66474.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
Length = 79
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 36 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 95
VL+ RN K + G + FD H N+ L+N ++ +GK + L K+ L
Sbjct: 20 VLLRLRNTKTVQGTLIDFDIHMNLTLDNAEDI-------SEGKTEKL--------GKILL 64
Query: 96 RGDSVIIV 103
RGD+++ V
Sbjct: 65 RGDNILAV 72
>gi|290987543|ref|XP_002676482.1| predicted protein [Naegleria gruberi]
gi|284090084|gb|EFC43738.1| predicted protein [Naegleria gruberi]
Length = 150
Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 7 EEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
+ED+ +N+E + + +S + + +V++ R+ KKL+G +R +D+ NM LE E
Sbjct: 4 QEDDEENDELKVDFYFPGAASLSDQLDKKVMVILRDGKKLIGILRCYDQFVNMTLEKTVE 63
Query: 67 MWTELPKTG 75
K G
Sbjct: 64 RIVVEDKYG 72
>gi|307188198|gb|EFN73030.1| Small nuclear ribonucleoprotein-associated protein B [Camponotus
floridanus]
Length = 209
Score = 34.3 bits (77), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N +V I ++++ +G +AFD+H N++L + E PK K ++ + R +
Sbjct: 6 NYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPER----EEKRVLGF 61
Query: 93 MFLRGDSVI 101
+ LRG++++
Sbjct: 62 VLLRGENIV 70
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,665,159,540
Number of Sequences: 23463169
Number of extensions: 60825345
Number of successful extensions: 139260
Number of sequences better than 100.0: 964
Number of HSP's better than 100.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 298
Number of HSP's that attempted gapping in prelim test: 138105
Number of HSP's gapped (non-prelim): 973
length of query: 108
length of database: 8,064,228,071
effective HSP length: 76
effective length of query: 32
effective length of database: 6,281,027,227
effective search space: 200992871264
effective search space used: 200992871264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)