BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033937
(108 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila
melanogaster GN=SmD2 PE=3 SV=1
Length = 119
Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 82/90 (91%), Positives = 86/90 (95%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 82
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 83 KKKVKPVNKDRFISKMFLRGDSVILVLRNP 112
>sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis
elegans GN=snr-4 PE=1 SV=1
Length = 118
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/100 (80%), Positives = 89/100 (89%)
Query: 8 EDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 67
E+ E+EEFN GPLS+L SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14 EELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73
Query: 68 WTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
WTE+PKTGKGKKKA V KDRFISKMFLRGDSVI+V++NP
Sbjct: 74 WTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
>sp|P62317|SMD2_MOUSE Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2
PE=2 SV=1
Length = 118
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/90 (88%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>sp|P62316|SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2
PE=1 SV=1
Length = 118
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/90 (88%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>sp|Q3SZF8|SMD2_BOVIN Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3
SV=1
Length = 118
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/90 (88%), Positives = 87/90 (96%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 77
FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 78 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>sp|Q54NC5|SMD2_DICDI Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium
discoideum GN=snrpd2 PE=3 SV=1
Length = 112
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/102 (75%), Positives = 92/102 (90%), Gaps = 1/102 (0%)
Query: 6 MEEDNVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 65
M ++ ++++ ++ N GPLS+LM SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLENV+
Sbjct: 4 MNDETMEDKPDDSN-GPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVK 62
Query: 66 EMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
E+WTE+PKT KGKKKA P+NKDRFISKMFLRGDSVI+VL+NP
Sbjct: 63 EIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 104
>sp|O14036|SMD2_SCHPO Small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smd2 PE=1 SV=1
Length = 115
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/94 (71%), Positives = 77/94 (81%), Gaps = 1/94 (1%)
Query: 14 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPK 73
EE EF+ GPLSVL +VKN+ QVLINCRNNKKLL RV+AFDRH NMVLENV+EMWTE +
Sbjct: 21 EEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKR 80
Query: 74 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 107
T G KK +NKDRFISKMFLRGD V++V+R P
Sbjct: 81 TASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113
>sp|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMD2 PE=1 SV=2
Length = 110
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 67/87 (77%), Gaps = 7/87 (8%)
Query: 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 80
GP+S++ ++ T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE K GK
Sbjct: 29 GPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--KKGKN--- 83
Query: 81 ALPVNKDRFISKMFLRGDSVIIVLRNP 107
+N++RFISK+FLRGDSVI+VL+ P
Sbjct: 84 --VINRERFISKLFLRGDSVIVVLKTP 108
>sp|Q9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm3 PE=1 SV=2
Length = 93
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + V + R +++L GR+ A+D H NMVL + E+ T K KA
Sbjct: 10 PLDLVRLSL--DEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKA 67
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
L + + +F+RGDSVI++
Sbjct: 68 LKTIRKHY-EMLFVRGDSVILI 88
>sp|Q54HH8|SMDL_DICDI Small nuclear ribonucleoprotein Sm D-like protein OS=Dictyostelium
discoideum GN=DDB_G0289453 PE=3 SV=1
Length = 257
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 11 VKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVR----AFDRHCNMVLENVRE 66
+KN +F GPLS+L ++++ +++ + R + G R AFD+H N++L +V E
Sbjct: 155 LKNISNKFTDGPLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIILRDVEE 214
Query: 67 MWT---ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104
+ LP T + P K R+ ++F++GD+V+ V+
Sbjct: 215 EYDLLKSLPSTRNQNQPIQPKIK-RYYGQLFIKGDTVVSVI 254
>sp|P62311|LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3
PE=3 SV=2
Length = 102
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>sp|P62310|LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3
PE=1 SV=2
Length = 102
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>sp|Q32PE9|LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3
SV=3
Length = 102
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>sp|Q1ZXK3|LSM3_DICDI Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium
discoideum GN=lsm3 PE=3 SV=1
Length = 97
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL ++ +S+ + ++ + R +++L G++ A+D+H NM+L +V E + K + ++
Sbjct: 12 PLDLIRLSL--DERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEI 69
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ N R I +F+RGD VI++
Sbjct: 70 IR-NIKRNIKMLFVRGDGVILI 90
>sp|Q29329|SMD2_PIG Small nuclear ribonucleoprotein Sm D2 (Fragment) OS=Sus scrofa
GN=SNRPD2 PE=3 SV=1
Length = 50
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 20/27 (74%)
Query: 18 FNTGPLSVLMMSVKNNTQVLINCRNNK 44
FNTGPLSV S K TQVLINCRN K
Sbjct: 24 FNTGPLSVXTQSXKTXTQVLINCRNTK 50
>sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM3 PE=1
SV=1
Length = 89
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L +++ + +V I R + L+G ++AFD HCN+VL + E +L + +
Sbjct: 4 PLDLLKLNL--DERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESE- 60
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
R +F+RGD+V ++
Sbjct: 61 ------RRCEMVFIRGDTVTLI 76
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0360 PE=3 SV=2
Length = 83
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 19 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGK 78
NT P+ VL ++ N VLI+ + N++ G + +D + N+VL+N E+ G+
Sbjct: 7 NTKPMDVLKNALSRN--VLIDVKGNREYSGILEGYDVYMNVVLQNASEIIN-------GE 57
Query: 79 KKALPVNKDRFISKMFLRGDSVIIV 103
K + ++ +RGD+VI V
Sbjct: 58 NKGV-------FDRILVRGDNVIFV 75
>sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1240 PE=3 SV=1
Length = 83
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 19 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGK 78
N P+ VL ++ N VLI+ + N++ G + +D + N+VL+N E+ G+
Sbjct: 7 NVKPMDVLKSALSRN--VLIDVKGNREYSGILEGYDVYMNIVLQNASEIIN-------GE 57
Query: 79 KKALPVNKDRFISKMFLRGDSVIIV 103
K + ++ +RGD+VI V
Sbjct: 58 NKGV-------YDRVLVRGDNVIFV 75
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 16/82 (19%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL VL ++ N+ V++ + ++ G ++ +D H N+VL+N E+ K + +K
Sbjct: 5 PLDVLNEAL--NSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEEL-----KENEASRK- 56
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ + +RGD+V+ V
Sbjct: 57 --------LGTIIVRGDTVVYV 70
>sp|Q9TU66|RSMB_MONDO Small nuclear ribonucleoprotein-associated protein B'
OS=Monodelphis domestica GN=SNRPB PE=2 SV=1
Length = 240
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
Query: 28 MSVKNNTQVL--INCR------NNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 79
M+V ++++L I+CR + + +G +AFD+H N++L + E PK K +
Sbjct: 1 MTVGKSSKMLQHIDCRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 80 KALPVNKDRFISKMFLRGDSVI 101
+ + R + + LRG++++
Sbjct: 61 R----EEKRVLGLVLLRGENLV 78
>sp|Q54W83|LSM1_DICDI Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium
discoideum GN=lsm1 PE=3 SV=1
Length = 129
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 11/71 (15%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
+ ++++ R+ +K +G +R FD+ N+VL++ E + D+ +
Sbjct: 10 DKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIE-----------RIYVGDCYSDKNLGL 58
Query: 93 MFLRGDSVIIV 103
F+RGD+V+I+
Sbjct: 59 FFIRGDNVVIL 69
>sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=MA_3195 PE=3 SV=1
Length = 72
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 16/82 (19%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L ++ +T V++ + ++ G ++ +D H N+VL+N E+ + G+ K
Sbjct: 5 PLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL-----RDGEVVSK- 56
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
S + +RGD+V+ V
Sbjct: 57 --------FSSVVIRGDNVVYV 70
>sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0339 PE=3 SV=1
Length = 72
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 16/82 (19%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L ++ +T V++ + ++ G ++ +D H N+VL+N E+ + G+ K
Sbjct: 5 PLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL-----REGEVVSK- 56
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
S + +RGD+V+ V
Sbjct: 57 --------FSSVVIRGDNVVYV 70
>sp|Q12U30|RUXX_METBU Putative snRNP Sm-like protein OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_2181 PE=3 SV=1
Length = 72
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 16/82 (19%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L ++ NT V++ + ++ G ++ +D H N+VL+ E+ K G+ +K
Sbjct: 5 PLDILNDAL--NTSVIVRLKGAREFRGVLQGYDVHMNLVLDEAEEL-----KDGEIVRK- 56
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
I + +RGD+V+ V
Sbjct: 57 --------IGGVVIRGDNVVYV 70
>sp|P91918|RSMB_CAEEL Probable small nuclear ribonucleoprotein-associated protein B
OS=Caenorhabditis elegans GN=snr-2 PE=3 SV=1
Length = 160
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 28 MSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGK---GKKKALPV 84
M N ++ I ++ + +G +AFD+H N++L E PK GK G++K
Sbjct: 9 MMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEK---- 64
Query: 85 NKDRFISKMFLRGDSVI 101
R + + +RG+ ++
Sbjct: 65 ---RILGLVLVRGEHIV 78
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G OS=Medicago sativa
GN=C29 PE=3 SV=1
Length = 81
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 15/69 (21%)
Query: 35 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 94
Q+ IN + N+ ++G +R FD+ N+V++N E+ N+ I +
Sbjct: 17 QLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNG---------------NEKNDIGMVV 61
Query: 95 LRGDSVIIV 103
+RG+SV+ V
Sbjct: 62 IRGNSVVTV 70
>sp|Q9YEQ5|RUXX_AERPE Putative snRNP Sm-like protein OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_0525a PE=3 SV=1
Length = 77
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 18/87 (20%)
Query: 20 TGPLSVL---MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGK 76
+GP+++ MM +T VL+ ++ ++ G ++ +D+H N++L + E+
Sbjct: 2 SGPITLPTLRMMLDYVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEEIGE------- 54
Query: 77 GKKKALPVNKDRFISKMFLRGDSVIIV 103
R + +RGDSV+++
Sbjct: 55 --------TSIRRLGLTLVRGDSVVVI 73
>sp|P40089|LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM5 PE=1
SV=1
Length = 93
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL V+ ++ N +VLI ++N++ G + FD N++LE+ E W P+ +K
Sbjct: 8 PLEVIDKTI--NQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVE-WLIDPEDESRNEKV 64
Query: 82 LPVNKDRFISKMFLRGDSVIIVLRNPK 108
+ + +M L G+++ I++ K
Sbjct: 65 M-----QHHGRMLLSGNNIAILVPGGK 86
>sp|P87173|LSM1_SCHPO U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm1 PE=3 SV=1
Length = 140
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
+ +V++ R+ KKL+G +R+FD+ N++L+ E
Sbjct: 21 DRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIE 54
>sp|P17136|RSMB_RAT Small nuclear ribonucleoprotein-associated protein B (Fragment)
OS=Rattus norvegicus GN=Snrpb PE=2 SV=1
Length = 214
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 41 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 100
+N + +G +AFD+H N++L + E PK K ++ + R + + LRG+++
Sbjct: 5 QNGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 60
Query: 101 I 101
+
Sbjct: 61 V 61
>sp|O29386|RUXX_ARCFU Putative snRNP Sm-like protein OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0875 PE=1 SV=1
Length = 77
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 16/86 (18%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL VL S+K + V++ + ++ G + +D H N+VL + E+ + G+ +K
Sbjct: 5 PLDVLNRSLK--SPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEI-----QNGEVVRK- 56
Query: 82 LPVNKDRFISKMFLRGDSVIIVLRNP 107
+ + +RGD+V+ V P
Sbjct: 57 --------VGSVVIRGDTVVFVSPAP 74
>sp|P47017|LSM1_YEAST Sm-like protein LSm1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=LSM1 PE=1 SV=1
Length = 172
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 16 EEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
+++N + ++ SV + ++ + R+ + L G +R FD++ N++L++ E
Sbjct: 36 DQYNFTTTAAIVSSV--DRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVE 84
>sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1
Length = 72
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 16/82 (19%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL +L ++ +T V++ + ++ G ++ +D H N+VL+N E+ + G+ K
Sbjct: 5 PLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL-----REGEVVSK- 56
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ +RGD+V+ V
Sbjct: 57 --------FGSVVIRGDNVVYV 70
>sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1
Length = 81
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 43/82 (52%), Gaps = 16/82 (19%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL L S+ N+ V+I + +++ G +++FD H N+VL + E+ + G+ ++
Sbjct: 14 PLDALGNSL--NSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL-----EDGEVTRR- 65
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
+ + +RGD+++ +
Sbjct: 66 --------LGTVLIRGDNIVYI 79
>sp|Q55A45|RSMB_DICDI Small nuclear ribonucleoprotein-associated protein B
OS=Dictyostelium discoideum GN=snrpb PE=3 SV=1
Length = 274
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 92
N ++ + ++ + ++GR AFD+H N+V+ + E + + + GK ++ + R +
Sbjct: 15 NYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEE-FRRIRQKGKEDRE-----EKRTLGM 68
Query: 93 MFLRGDSVI 101
+ +RG++V+
Sbjct: 69 ILIRGETVV 77
>sp|P40204|RUXG_YEAST Small nuclear ribonucleoprotein G OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMX2 PE=1 SV=1
Length = 77
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 35 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 94
++L+N ++K+ G +R +D N+VL++ E+ E P N + +
Sbjct: 14 KILLNINGSRKVAGILRGYDIFLNVVLDDAMEINGE-----------DPANNHQLGLQTV 62
Query: 95 LRGDSVI 101
+RG+S+I
Sbjct: 63 IRGNSII 69
>sp|Q05856|RSMB_DROME Small nuclear ribonucleoprotein-associated protein B
OS=Drosophila melanogaster GN=SmB PE=1 SV=1
Length = 199
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66
N +V I ++++ +G +AFD+H N++L + E
Sbjct: 14 NYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEE 47
>sp|C6A1T2|RUXX_THESM Putative snRNP Sm-like protein OS=Thermococcus sibiricus (strain MM
739 / DSM 12597) GN=TSIB_0511 PE=3 SV=1
Length = 76
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 16/82 (19%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL V+ S+ + +VL+ + + G++ +D H N+VL + + + PK G
Sbjct: 5 PLDVIHKSL--DKEVLVILKRGAEYRGKLIGYDIHLNVVLADAQLIENGEPKKSYG---- 58
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K+ +RGD+V+ +
Sbjct: 59 ----------KIVIRGDNVLAI 70
>sp|Q8U0P4|RUXX_PYRFU Putative snRNP Sm-like protein OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1542 PE=3 SV=1
Length = 76
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 16/82 (19%)
Query: 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 81
PL V+ S+ + VL+ + + G++ +D H N+VL N EL + G+ KK
Sbjct: 5 PLDVIHKSL--DKDVLVILKKGFEFRGKLIGYDIHLNVVLAN-----AELLQDGEVVKKY 57
Query: 82 LPVNKDRFISKMFLRGDSVIIV 103
K+ +RGD+V+ +
Sbjct: 58 ---------GKIVIRGDNVLAI 70
>sp|P63164|RSMN_RAT Small nuclear ribonucleoprotein-associated protein N OS=Rattus
norvegicus GN=Snrpn PE=2 SV=1
Length = 240
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 41 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 100
++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77
Query: 101 I 101
+
Sbjct: 78 V 78
>sp|Q5R6I0|RSMN_PONAB Small nuclear ribonucleoprotein-associated protein N OS=Pongo
abelii GN=SNRPN PE=2 SV=1
Length = 240
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 41 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 100
++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77
Query: 101 I 101
+
Sbjct: 78 V 78
>sp|P63163|RSMN_MOUSE Small nuclear ribonucleoprotein-associated protein N OS=Mus
musculus GN=Snrpn PE=2 SV=1
Length = 240
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 41 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 100
++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77
Query: 101 I 101
+
Sbjct: 78 V 78
>sp|Q60HD3|RSMN_MACFA Small nuclear ribonucleoprotein-associated protein N OS=Macaca
fascicularis GN=SNRPN PE=2 SV=1
Length = 240
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 41 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 100
++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77
Query: 101 I 101
+
Sbjct: 78 V 78
>sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein-associated protein N OS=Homo
sapiens GN=SNRPN PE=1 SV=1
Length = 240
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 41 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 100
++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77
Query: 101 I 101
+
Sbjct: 78 V 78
>sp|P27048|RSMB_MOUSE Small nuclear ribonucleoprotein-associated protein B OS=Mus
musculus GN=Snrpb PE=1 SV=1
Length = 231
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 41 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 100
++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77
Query: 101 I 101
+
Sbjct: 78 V 78
>sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein-associated proteins B and B'
OS=Homo sapiens GN=SNRPB PE=1 SV=2
Length = 240
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 41 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 100
++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77
Query: 101 I 101
+
Sbjct: 78 V 78
>sp|Q9TU67|RSMB_ERIEU Small nuclear ribonucleoprotein-associated protein B' OS=Erinaceus
europaeus GN=SNRPB PE=2 SV=1
Length = 240
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 41 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 100
++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77
Query: 101 I 101
+
Sbjct: 78 V 78
>sp|P93115|MGDG_CUCSA Monogalactosyldiacylglycerol synthase, chloroplastic OS=Cucumis
sativus PE=1 SV=1
Length = 525
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 35 QVLINCRNNKKLLGRVRAFD 54
QVL+ C +NKKL GR+R+ D
Sbjct: 378 QVLVICGHNKKLAGRLRSID 397
>sp|Q58DW4|RSMB_BOVIN Small nuclear ribonucleoprotein-associated protein B' OS=Bos taurus
GN=SNRPB PE=2 SV=1
Length = 240
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 41 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 100
++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++
Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77
Query: 101 I 101
+
Sbjct: 78 V 78
>sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein-associated protein B' OS=Gallus
gallus GN=SNRPB PE=2 SV=1
Length = 240
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 41 RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 100
++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++
Sbjct: 22 QDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPER----EEKRVLGLVLLRGENL 77
Query: 101 I 101
+
Sbjct: 78 V 78
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,439,635
Number of Sequences: 539616
Number of extensions: 1513768
Number of successful extensions: 3653
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 3619
Number of HSP's gapped (non-prelim): 59
length of query: 108
length of database: 191,569,459
effective HSP length: 76
effective length of query: 32
effective length of database: 150,558,643
effective search space: 4817876576
effective search space used: 4817876576
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)