Query 033937
Match_columns 108
No_of_seqs 106 out of 1079
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 13:19:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033937.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033937hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b34b_ b.38.1.1 (B:) D2 core 100.0 4.4E-31 3.2E-35 173.2 9.1 89 20-108 1-89 (93)
2 d2fwka1 b.38.1.1 (A:24-115) U6 99.9 1.1E-26 8.3E-31 151.2 6.9 88 19-108 3-91 (92)
3 d1h641_ b.38.1.1 (1:) Archaeal 99.9 2.3E-25 1.7E-29 138.7 9.8 71 20-106 1-71 (71)
4 d1i4k1_ b.38.1.1 (1:) Archaeal 99.9 6.8E-25 4.9E-29 137.0 8.8 71 20-106 2-72 (72)
5 d1mgqa_ b.38.1.1 (A:) Archaeal 99.9 1.5E-24 1.1E-28 136.0 9.6 71 19-105 4-74 (74)
6 d1i8fa_ b.38.1.1 (A:) Archaeal 99.9 3.2E-24 2.3E-28 133.9 9.3 69 22-107 3-71 (71)
7 d1ljoa_ b.38.1.1 (A:) Archaeal 99.9 7.6E-24 5.6E-28 133.5 9.8 73 18-106 2-75 (75)
8 d1d3bb_ b.38.1.1 (B:) B core S 99.9 2E-23 1.5E-27 133.0 8.9 75 26-106 3-77 (81)
9 d1th7a1 b.38.1.1 (A:3-78) Arch 99.9 2.3E-23 1.7E-27 131.3 8.8 72 19-106 5-76 (76)
10 d1n9ra_ b.38.1.1 (A:) Small nu 99.9 3.2E-22 2.4E-26 123.8 8.2 67 26-108 1-68 (68)
11 d1d3ba_ b.38.1.1 (A:) D3 core 99.8 4.4E-21 3.2E-25 119.6 9.5 69 21-105 2-70 (72)
12 d1b34a_ b.38.1.1 (A:) D1 core 99.7 7.5E-18 5.4E-22 106.8 9.1 68 23-106 3-70 (80)
13 d1m5q1_ b.38.1.1 (1:) Sm-Like 99.6 2.8E-16 2.1E-20 107.3 8.7 64 23-106 2-65 (127)
14 d1u1sa1 b.38.1.2 (A:6-71) Plei 97.2 0.00032 2.4E-08 41.7 4.9 36 25-60 6-41 (66)
15 d1kq1a_ b.38.1.2 (A:) Pleiotro 97.2 0.00043 3.1E-08 40.4 5.3 42 25-66 6-47 (60)
16 d1ycya1 b.38.1.4 (A:5-70) Hypo 92.7 0.13 9.6E-06 29.5 5.0 41 25-68 6-46 (66)
17 d1biaa2 b.34.1.1 (A:271-317) B 92.2 0.18 1.3E-05 27.0 5.0 31 33-64 3-33 (47)
18 d2vxfa1 b.38.1.5 (A:6-85) LSM1 89.8 1.2 8.5E-05 26.6 9.2 69 32-105 3-72 (80)
19 d1ib8a1 b.38.2.1 (A:91-164) Hy 87.8 0.34 2.5E-05 27.9 3.9 30 26-57 9-42 (74)
20 d2z9ia2 b.47.1.1 (A:6-226) Pro 57.1 4.5 0.00033 26.4 3.4 31 33-63 58-88 (221)
21 d1y0ya1 b.49.3.1 (A:73-163) Fr 52.2 7.8 0.00057 22.6 3.6 20 32-51 27-46 (91)
22 d2grea1 b.49.3.1 (A:74-186) De 50.7 6.3 0.00046 24.0 3.0 19 33-51 28-46 (113)
23 d1lcya2 b.47.1.1 (A:6-210) Mit 45.7 19 0.0014 23.0 5.1 34 30-63 62-95 (205)
24 d1zq1a1 b.38.3.1 (A:2-75) Glut 42.4 12 0.00089 21.4 3.2 43 24-66 4-55 (74)
25 d1rqpa1 b.141.1.1 (A:193-298) 40.5 9.2 0.00067 22.9 2.6 21 42-62 6-27 (106)
26 d2qqra1 b.34.9.1 (A:897-955) J 37.9 17 0.0012 20.0 3.1 23 31-53 4-26 (59)
27 d1ky9a2 b.47.1.1 (A:11-259) Pr 34.2 30 0.0022 23.1 4.8 33 31-63 98-130 (249)
28 d1yloa1 b.49.3.1 (A:67-147) Am 33.7 22 0.0016 20.2 3.4 21 32-52 27-47 (81)
29 d2qf3a1 b.47.1.1 (A:43-252) St 31.3 34 0.0025 21.7 4.5 35 30-64 56-90 (210)
30 d2d6fa1 b.38.3.1 (A:2-73) Glut 26.7 41 0.003 19.0 3.7 42 24-66 8-55 (72)
31 d1sg5a1 b.137.1.2 (A:1-86) Inh 22.9 23 0.0017 20.6 2.1 25 25-49 17-41 (86)
32 d1h8ca_ d.15.1.2 (A:) Fas-asso 22.5 22 0.0016 19.7 2.0 23 33-55 5-27 (82)
33 d1nvpd2 b.56.1.1 (D:54-99) Sma 22.3 52 0.0038 17.0 3.5 23 45-67 4-29 (46)
34 d1whga_ b.34.10.1 (A:) Tubulin 21.6 28 0.0021 21.2 2.4 23 28-50 31-53 (113)
35 d2do3a1 b.34.5.5 (A:462-523) T 20.6 6.9 0.0005 21.9 -0.7 42 22-63 3-44 (62)
No 1
>d1b34b_ b.38.1.1 (B:) D2 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.97 E-value=4.4e-31 Score=173.18 Aligned_cols=89 Identities=88% Similarity=1.350 Sum_probs=67.8
Q ss_pred CCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCCc
Q 033937 20 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 99 (108)
Q Consensus 20 ~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd~ 99 (108)
.|||++|++|++++++|+|+|++||.+.|+|+|||+||||+|+||+|+|...++..+..+..+....+|++|++||||||
T Consensus 1 tGPl~~l~~~~~~~~rV~V~lr~~r~~~G~L~afD~~~NlVL~d~~E~~~~~~~~~~~~~~~~~~~~~R~lg~~liRGdn 80 (93)
T d1b34b_ 1 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDS 80 (93)
T ss_dssp CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGG
T ss_pred CCcHHHHHHHHhCCcEEEEEECCCCEEEEEEEEeccceeEEeeceEEEEEecCCccccccccccceeEEEeceEEEeCCE
Confidence 48999999999999999999999999999999999999999999999988755433222222223456899999999999
Q ss_pred EEEEEeCCC
Q 033937 100 VIIVLRNPK 108 (108)
Q Consensus 100 Iv~I~~~~~ 108 (108)
|++|.+.|+
T Consensus 81 Vv~I~~~p~ 89 (93)
T d1b34b_ 81 VIVVLRNPL 89 (93)
T ss_dssp EEEEEECCC
T ss_pred EEEEEcChh
Confidence 999999995
No 2
>d2fwka1 b.38.1.1 (A:24-115) U6 snRNA-associated sm-like protein LSM5 {Cryptosporidium parvum [TaxId: 5807]}
Probab=99.93 E-value=1.1e-26 Score=151.17 Aligned_cols=88 Identities=20% Similarity=0.338 Sum_probs=68.0
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCC-ccccccCcceeeeceEEEeC
Q 033937 19 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKG-KKKALPVNKDRFISKMFLRG 97 (108)
Q Consensus 19 ~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~-~~~~~~~~~~r~lg~i~IRG 97 (108)
...|+++|++++ +++|+|.|+||+.|.|+|.|||+||||+|+||+|++....++... ..........|++|++||||
T Consensus 3 ~~~Pl~~L~~~l--~k~V~V~l~~gr~~~G~L~~~D~~~NlvL~d~~E~~~~~~~~~~~~~~~~~~~~~~r~lg~~~iRG 80 (92)
T d2fwka1 3 IILPLALIDKCI--GNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSG 80 (92)
T ss_dssp CCCHHHHHHHTB--TSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECG
T ss_pred ccChHHHHHHHc--CCEEEEEEcCCCEEEEEEEEEcCCCCEEEeeEEEEEecCCccccccccccccccceeEcceEEEeC
Confidence 568999999999 999999999999999999999999999999999998654332111 00011123558899999999
Q ss_pred CcEEEEEeCCC
Q 033937 98 DSVIIVLRNPK 108 (108)
Q Consensus 98 d~Iv~I~~~~~ 108 (108)
++|++|+|..+
T Consensus 81 ~~Vv~I~p~~~ 91 (92)
T d2fwka1 81 NNVAMLVPGGD 91 (92)
T ss_dssp GGEEEEESSSC
T ss_pred CEEEEEEeCCC
Confidence 99999998653
No 3
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=99.92 E-value=2.3e-25 Score=138.65 Aligned_cols=71 Identities=25% Similarity=0.433 Sum_probs=64.3
Q ss_pred CCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCCc
Q 033937 20 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 99 (108)
Q Consensus 20 ~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd~ 99 (108)
+.|+++|++++ +++|.|.|+||+.|+|+|.+||+||||+|+||+|+... + ..+++|.+||||++
T Consensus 1 ~~Pl~~L~~~~--~~~V~V~lk~g~~~~G~L~~~D~~mNlvL~~~~e~~~~-----~---------~~~~l~~~~IRG~~ 64 (71)
T d1h641_ 1 ERPLDVIHRSL--DKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG-----E---------VVKRYGKIVIRGDN 64 (71)
T ss_dssp CCHHHHHHTTT--TSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETT-----E---------EEEEEEEEEECGGG
T ss_pred CCchHHHHHhC--CCEEEEEEcCCCEEEEEEEEECCCCCeEEeeEEEEecC-----C---------cEeEcCcEEEECCe
Confidence 47999999999 99999999999999999999999999999999998532 1 23679999999999
Q ss_pred EEEEEeC
Q 033937 100 VIIVLRN 106 (108)
Q Consensus 100 Iv~I~~~ 106 (108)
|++|+|+
T Consensus 65 I~~Isp~ 71 (71)
T d1h641_ 65 VLAISPT 71 (71)
T ss_dssp EEEEEEC
T ss_pred EEEEeCC
Confidence 9999985
No 4
>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]}
Probab=99.91 E-value=6.8e-25 Score=137.04 Aligned_cols=71 Identities=27% Similarity=0.495 Sum_probs=63.8
Q ss_pred CCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCCc
Q 033937 20 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 99 (108)
Q Consensus 20 ~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd~ 99 (108)
..|+++|++++ +++|+|.|+||+.|+|+|.|||+||||+|+||+|+... + ..+++|.++|||++
T Consensus 2 ~~Pl~~L~~~~--~~~V~V~lk~g~~~~G~L~~~D~~mNlvL~~~~e~~~~-----~---------~~~~~g~~~IRG~~ 65 (72)
T d1i4k1_ 2 PRPLDVLNRSL--KSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNG-----E---------VVRKVGSVVIRGDT 65 (72)
T ss_dssp CCHHHHHHTTT--TSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEESSS-----S---------EEEEEEEEEECGGG
T ss_pred CChHHHHHHhC--CCEEEEEECCCCEEEEEEEEEcCCCCeEEeeEEEEecC-----C---------eEeEcceEEEeCCe
Confidence 36999999999 99999999999999999999999999999999997432 1 23679999999999
Q ss_pred EEEEEeC
Q 033937 100 VIIVLRN 106 (108)
Q Consensus 100 Iv~I~~~ 106 (108)
|++|+|+
T Consensus 66 I~~Ispa 72 (72)
T d1i4k1_ 66 VVFVSPA 72 (72)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 9999975
No 5
>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=99.91 E-value=1.5e-24 Score=136.05 Aligned_cols=71 Identities=27% Similarity=0.524 Sum_probs=64.2
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCC
Q 033937 19 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 98 (108)
Q Consensus 19 ~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd 98 (108)
...|+++|++++ +++|.|+|+||+.|+|+|.|||+||||+|+||+|++.. ...+++|.++|||+
T Consensus 4 ~~~Pl~~L~~~~--~k~V~V~lk~g~~~~G~L~~~D~~mNl~L~~~~e~~~~--------------~~~~~~~~~~IRG~ 67 (74)
T d1mgqa_ 4 VQRPLDALGNSL--NSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDG--------------EVTRRLGTVLIRGD 67 (74)
T ss_dssp TTCTTHHHHHTT--TSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETT--------------EEEEEEEEEEECGG
T ss_pred ccCcHHHHHHhC--CCeEEEEECCCCEEEEEEEEECCCCCeEEeeEEEEeCC--------------CeEeEcceEEEeCC
Confidence 467999999999 99999999999999999999999999999999998532 13367999999999
Q ss_pred cEEEEEe
Q 033937 99 SVIIVLR 105 (108)
Q Consensus 99 ~Iv~I~~ 105 (108)
+|++|+|
T Consensus 68 ~I~~I~p 74 (74)
T d1mgqa_ 68 NIVYISP 74 (74)
T ss_dssp GEEEEEC
T ss_pred EEEEEeC
Confidence 9999987
No 6
>d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=99.90 E-value=3.2e-24 Score=133.90 Aligned_cols=69 Identities=29% Similarity=0.488 Sum_probs=62.4
Q ss_pred cHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCCcEE
Q 033937 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 101 (108)
Q Consensus 22 Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd~Iv 101 (108)
+-+.|++++ +++|.|+|+||+.|.|+|++||+||||+|+||+|++.. ..+.+|.++|||++|+
T Consensus 3 ~~~~L~~~~--~k~V~V~Lk~g~~~~G~L~~~D~~mNivL~~~~e~~~~---------------~~~~~g~v~iRG~~I~ 65 (71)
T d1i8fa_ 3 LGATLQDSI--GKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDG---------------NVYKRGTMVVRGENVL 65 (71)
T ss_dssp HHHHHHTTT--TSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEEETT---------------EEEEEEEEEECGGGEE
T ss_pred HhHHHHHhC--CCEEEEEECCCCEEEEEEEEECCCcceEEccEEEEECC---------------CEEEcceEEEeCCeEE
Confidence 457899999 99999999999999999999999999999999998532 2367999999999999
Q ss_pred EEEeCC
Q 033937 102 IVLRNP 107 (108)
Q Consensus 102 ~I~~~~ 107 (108)
+|+|.|
T Consensus 66 ~I~~~P 71 (71)
T d1i8fa_ 66 FISPVP 71 (71)
T ss_dssp EEEECC
T ss_pred EEeCCC
Confidence 999988
No 7
>d1ljoa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]}
Probab=99.90 E-value=7.6e-24 Score=133.46 Aligned_cols=73 Identities=22% Similarity=0.362 Sum_probs=64.4
Q ss_pred cCCCcHHHHHhhhhCCcEEEEEecCC-eEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEe
Q 033937 18 FNTGPLSVLMMSVKNNTQVLINCRNN-KKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 96 (108)
Q Consensus 18 ~~~~Pl~~L~~~~~~~krV~V~l~~g-r~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IR 96 (108)
+...|+++|++++ +++|+|+|++| +.|.|+|.|||+||||+|+||+|+... ...+.+|.++||
T Consensus 2 ~~~~P~~~L~~~~--~~~V~V~lk~~~~~~~G~L~~~D~~mNlvL~~~~e~~~~--------------~~~~~~g~~~IR 65 (75)
T d1ljoa_ 2 AMVLPNQMVKSMV--GKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGE--------------EKVRSLGEIVLR 65 (75)
T ss_dssp CCCCHHHHHHHTT--TSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETT--------------EEEEEEEEEEEC
T ss_pred CccccHHHHHHhc--CCEEEEEEECCCEEEEEEEEEEcCCCcEEEeEEEEEcCC--------------CcEeEcceEEEe
Confidence 4578999999999 99999999976 799999999999999999999997532 123679999999
Q ss_pred CCcEEEEEeC
Q 033937 97 GDSVIIVLRN 106 (108)
Q Consensus 97 Gd~Iv~I~~~ 106 (108)
|++|++|+|.
T Consensus 66 G~~I~~I~p~ 75 (75)
T d1ljoa_ 66 GNNVVLIQPQ 75 (75)
T ss_dssp GGGEEEEEEC
T ss_pred CCEEEEEECC
Confidence 9999999973
No 8
>d1d3bb_ b.38.1.1 (B:) B core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.89 E-value=2e-23 Score=132.96 Aligned_cols=75 Identities=20% Similarity=0.452 Sum_probs=61.4
Q ss_pred HHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCCcEEEEEe
Q 033937 26 LMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 105 (108)
Q Consensus 26 L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd~Iv~I~~ 105 (108)
|.+++ +++|+|.|+|||.|.|+|+|||+||||+|+||+|++.....+.+... ....|.+|+++|||++|++|+.
T Consensus 3 L~~~l--~~rv~V~l~dgR~~~G~L~~~D~~~NlvL~~~~E~~~~~~~~~~~~~----~~~~r~lG~v~IRG~~Iv~i~~ 76 (81)
T d1d3bb_ 3 MLQHI--DYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE----REEKRVLGLVLLRGENLVSMTV 76 (81)
T ss_dssp CGGGT--TSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCC----EEEEEEEEEEEECGGGEEEEEE
T ss_pred hHHHC--CCEEEEEEcCCCEEEEEEEEECCccCEEEcCEEEEEeecCccccccc----cceEEEeeeEEEeCCEEEEEEc
Confidence 45677 99999999999999999999999999999999999765433322111 1245889999999999999986
Q ss_pred C
Q 033937 106 N 106 (108)
Q Consensus 106 ~ 106 (108)
.
T Consensus 77 ~ 77 (81)
T d1d3bb_ 77 E 77 (81)
T ss_dssp E
T ss_pred c
Confidence 3
No 9
>d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein {Sulfolobus solfataricus [TaxId: 2287]}
Probab=99.89 E-value=2.3e-23 Score=131.26 Aligned_cols=72 Identities=31% Similarity=0.559 Sum_probs=64.0
Q ss_pred CCCcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCC
Q 033937 19 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 98 (108)
Q Consensus 19 ~~~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd 98 (108)
...|..+|.+++ +++|+|.|+||+.|+|+|.|||+||||+|+||+|+... + ..+.+|.++|||+
T Consensus 5 ~~~~~~~L~~~~--~~~V~V~lk~g~~~~G~L~~~D~~mNlvL~~~~e~~~~----~----------~~~~~~~v~iRG~ 68 (76)
T d1th7a1 5 AETAHKVLAESL--NNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD----G----------SGKKLGTIVIRGD 68 (76)
T ss_dssp CHHHHHHHHHHT--TSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSS----S----------CEEEEEEEEECGG
T ss_pred cccHHHHHHHhC--CCEEEEEECCCCEEEEEEEEECCCCCEEEeEEEEEecC----C----------cccCcceEEEECC
Confidence 345899999999 99999999999999999999999999999999997532 1 2367999999999
Q ss_pred cEEEEEeC
Q 033937 99 SVIIVLRN 106 (108)
Q Consensus 99 ~Iv~I~~~ 106 (108)
+|++|+|.
T Consensus 69 ~I~~I~~~ 76 (76)
T d1th7a1 69 NVILISPL 76 (76)
T ss_dssp GEEEEEEC
T ss_pred EEEEEEeC
Confidence 99999984
No 10
>d1n9ra_ b.38.1.1 (A:) Small nuclear ribonucleoprotein F, Smf {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.86 E-value=3.2e-22 Score=123.78 Aligned_cols=67 Identities=21% Similarity=0.322 Sum_probs=57.5
Q ss_pred HHhhhhCCcEEEEEec-CCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCCcEEEEE
Q 033937 26 LMMSVKNNTQVLINCR-NNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 104 (108)
Q Consensus 26 L~~~~~~~krV~V~l~-~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd~Iv~I~ 104 (108)
|++++ +++|.|+|+ ++++|+|+|.+||+|||++|+||+|+... + ..+.+|.++|||+||++|.
T Consensus 1 L~~~~--~~~V~V~Lk~~~~~~~G~L~~~D~~mNlvL~~~~e~~~~-----~---------~~~~lg~~~IRG~nI~~I~ 64 (68)
T d1n9ra_ 1 LKGLV--NHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAG-----V---------SHGTLGEIFIRCNNVLYIR 64 (68)
T ss_dssp CGGGT--TSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETT-----E---------EEEECCSEEECGGGEEEEE
T ss_pred ChhHC--CCEEEEEEEcCCEEEEEEEEEECCcCceEEeeEEEEecC-----C---------cccCcCeEEEECCEEEEEE
Confidence 45677 999999999 56789999999999999999999997532 1 2357999999999999999
Q ss_pred eCCC
Q 033937 105 RNPK 108 (108)
Q Consensus 105 ~~~~ 108 (108)
+.|.
T Consensus 65 ~~pd 68 (68)
T d1n9ra_ 65 ELPN 68 (68)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 9884
No 11
>d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.84 E-value=4.4e-21 Score=119.62 Aligned_cols=69 Identities=14% Similarity=0.303 Sum_probs=61.4
Q ss_pred CcHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCCcE
Q 033937 21 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 100 (108)
Q Consensus 21 ~Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd~I 100 (108)
.|+.+|+++. |++|+|+|+||+.|+|+|.+||.|||++|+||+++... + ...+++.+||||++|
T Consensus 2 ~Pl~~L~~~~--g~~V~VeLkng~~~~G~L~~~D~~mNi~L~~~~~~~~~----~----------~~~~~~~v~IRG~~I 65 (72)
T d1d3ba_ 2 VPIKVLHEAE--GHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRD----G----------RVAQLEQVYIRGCKI 65 (72)
T ss_dssp CHHHHHHHTT--TSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTT----S----------CEEEEEEEEECGGGE
T ss_pred CchHHHHhcC--CCEEEEEECCCeEEEEEEEEEcCCeeEEEEEEEEEcCC----C----------cEeEcCeEEEECCEE
Confidence 6999999999 99999999999999999999999999999999986321 1 225689999999999
Q ss_pred EEEEe
Q 033937 101 IIVLR 105 (108)
Q Consensus 101 v~I~~ 105 (108)
.+|..
T Consensus 66 ~~i~l 70 (72)
T d1d3ba_ 66 RFLIL 70 (72)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99975
No 12
>d1b34a_ b.38.1.1 (A:) D1 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.73 E-value=7.5e-18 Score=106.78 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=59.0
Q ss_pred HHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCCcEEE
Q 033937 23 LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVII 102 (108)
Q Consensus 23 l~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd~Iv~ 102 (108)
..+|+++. |++|.|.|++|..|+|+|.++|.|||+.|+||+++... + ...+++.++|||++|.+
T Consensus 3 v~fL~~~~--g~~V~VeLkng~~~~G~L~~~D~~MNl~L~~~~~~~~~----~----------~~~~~~~v~IRG~~Ir~ 66 (80)
T d1b34a_ 3 VRFLMKLS--HETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKN----R----------EPVQLETLSIRGNNIRY 66 (80)
T ss_dssp HHHHHTCT--TCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTT----S----------CCEEEEEEEECGGGEEE
T ss_pred HHHHHHcC--CCEEEEEECCCCEEEEEEEEEcCCcEEEEEEEEEEcCC----C----------CEEEcccEEEcCCEEEE
Confidence 46889999 99999999999999999999999999999999986321 1 12569999999999999
Q ss_pred EEeC
Q 033937 103 VLRN 106 (108)
Q Consensus 103 I~~~ 106 (108)
|...
T Consensus 67 i~lP 70 (80)
T d1b34a_ 67 FILP 70 (80)
T ss_dssp EECC
T ss_pred EECC
Confidence 9863
No 13
>d1m5q1_ b.38.1.1 (1:) Sm-Like archaeal protein Smap3 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=99.65 E-value=2.8e-16 Score=107.29 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=55.8
Q ss_pred HHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCCcEEE
Q 033937 23 LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVII 102 (108)
Q Consensus 23 l~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd~Iv~ 102 (108)
++.|..++ +++|.|.|+||+.++|+|.+||+|||++|+||++.. + ..++.++|||++|.+
T Consensus 2 ~~~L~~~~--gk~V~VeLkng~~~~G~L~~~D~~mNivL~da~~~~------~------------~k~~~v~IRG~~I~~ 61 (127)
T d1m5q1_ 2 VAELNNLL--GREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA------G------------EKFNRVFIMYRYIVH 61 (127)
T ss_dssp HHHHHTTT--TSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEETT------C------------CEEEEEEECGGGEEE
T ss_pred hhHHHHhC--CCEEEEEECCCCEEEEEEEEECCCceEEEeEEEECC------C------------CcccEEEEeCCeEEE
Confidence 46789999 999999999999999999999999999999998741 0 127889999999999
Q ss_pred EEeC
Q 033937 103 VLRN 106 (108)
Q Consensus 103 I~~~ 106 (108)
|...
T Consensus 62 I~~~ 65 (127)
T d1m5q1_ 62 IDST 65 (127)
T ss_dssp EEEC
T ss_pred EEcc
Confidence 9743
No 14
>d1u1sa1 b.38.1.2 (A:6-71) Pleiotropic translational regulator Hfq {Pseudomonas aeruginosa [TaxId: 287]}
Probab=97.18 E-value=0.00032 Score=41.71 Aligned_cols=36 Identities=28% Similarity=0.334 Sum_probs=32.3
Q ss_pred HHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceE
Q 033937 25 VLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60 (108)
Q Consensus 25 ~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlv 60 (108)
+|....+++..|.|.|.+|-.++|.+.|||+|.=|+
T Consensus 6 fLn~~rk~~~~VtifL~nGvkl~G~I~~fD~ftvLL 41 (66)
T d1u1sa1 6 YLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILL 41 (66)
T ss_dssp HHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHHcCCcEEEEEEcCcEEEEEEEEEcceEEEE
Confidence 677788889999999999999999999999997544
No 15
>d1kq1a_ b.38.1.2 (A:) Pleiotropic translational regulator Hfq {Staphylococcus aureus [TaxId: 1280]}
Probab=97.17 E-value=0.00043 Score=40.44 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=35.9
Q ss_pred HHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEE
Q 033937 25 VLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 66 (108)
Q Consensus 25 ~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E 66 (108)
+|....+++.+|.|.|.+|-.++|.+.|||+|.=|+..+...
T Consensus 6 fln~lr~~~~~VtifL~nGvkl~G~I~~fD~ftvlL~~~~~q 47 (60)
T d1kq1a_ 6 ALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQGKQ 47 (60)
T ss_dssp HHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEETTEE
T ss_pred HHHHHHHcCCcEEEEEECCcEEEEEEEEEcceEEEEEeCCcE
Confidence 566777778999999999999999999999999877666443
No 16
>d1ycya1 b.38.1.4 (A:5-70) Hypothetical protein PF1955 {Pyrococcus furiosus [TaxId: 2261]}
Probab=92.72 E-value=0.13 Score=29.52 Aligned_cols=41 Identities=20% Similarity=0.377 Sum_probs=31.9
Q ss_pred HHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeeceEEEe
Q 033937 25 VLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 68 (108)
Q Consensus 25 ~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~~E~~ 68 (108)
.|.++. +++|-|...+...|+|+|.-||.-. +.|.|++.+.
T Consensus 6 tL~~WK--g~kvAv~vgsehSFtGiledFDeEv-iLL~dV~D~~ 46 (66)
T d1ycya1 6 VLKEWK--GHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVI 46 (66)
T ss_dssp HHHHHT--TSEEEEEEC----CEEEEEEECSSE-EEEEEEEETT
T ss_pred HHHHhC--CcEEEEEecCcceeEEEhhhcCcce-EeehhhHHHh
Confidence 567777 9999999998999999999999975 7789988763
No 17
>d1biaa2 b.34.1.1 (A:271-317) Biotin repressor/biotin holoenzyme synthetase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=92.20 E-value=0.18 Score=27.03 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=27.4
Q ss_pred CcEEEEEecCCeEEEEEEEEecCccceEeece
Q 033937 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64 (108)
Q Consensus 33 ~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~ 64 (108)
+++|+|.. +++.+.|+..|.|..=.|+|...
T Consensus 3 gk~V~v~~-g~~~i~G~a~gId~~G~Lll~t~ 33 (47)
T d1biaa2 3 NRPVKLII-GDKEIFGISRGIDKQGALLLEQD 33 (47)
T ss_dssp TSEEEEEE-TTEEEEEEEEEECTTSCEEEEET
T ss_pred CCEEEEEE-CCeEEEEEEeeECCCCcEEEEEC
Confidence 89999976 66889999999999999999753
No 18
>d2vxfa1 b.38.1.5 (A:6-85) LSM14 homolog A (Lsm14a) {Zebrafish (Danio rerio) [TaxId: 7955]}
Probab=89.84 E-value=1.2 Score=26.58 Aligned_cols=69 Identities=17% Similarity=0.263 Sum_probs=49.6
Q ss_pred CCcEEEEEecCCeEEEEEEEEecCccc-eEeeceEEEeecCCCCCCCccccccCcceeeeceEEEeCCcEEEEEe
Q 033937 32 NNTQVLINCRNNKKLLGRVRAFDRHCN-MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 105 (108)
Q Consensus 32 ~~krV~V~l~~gr~i~G~L~~fD~hmN-lvL~d~~E~~~~~~~~~k~~~~~~~~~~~r~lg~i~IRGd~Iv~I~~ 105 (108)
.|++|.+..+.+-.|+|+|...|..=+ +.|.||..+-++-++... ...+ ...-.+.++.||+.|--+.-
T Consensus 3 IGs~IsLISk~dIRYeGiL~~Id~~~sTi~L~nVrsfGTEgR~~~~---~ipp--~~~vy~~IvFrgsDIKdL~v 72 (80)
T d2vxfa1 3 IGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDR---PIAP--RDETFEYIIFRGSDIKDLTV 72 (80)
T ss_dssp TTSEEEEEETTSCEEEEEEEEEETTTTEEEEEEEEECCSTTSCCSS---CCCC--CCCCEEEEEEETTTEEEEEE
T ss_pred cCCEEEEEEcCCcEEEEEEEeeccccCEEEeeeeeEeecCCCCCCC---ccCC--CCcceeEEEEcCcCcceEEe
Confidence 389999999999999999999998765 778998877544221110 0111 22457899999999976653
No 19
>d1ib8a1 b.38.2.1 (A:91-164) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]}
Probab=87.77 E-value=0.34 Score=27.89 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=25.0
Q ss_pred HHhhhhCCcEEEEEecC---C-eEEEEEEEEecCcc
Q 033937 26 LMMSVKNNTQVLINCRN---N-KKLLGRVRAFDRHC 57 (108)
Q Consensus 26 L~~~~~~~krV~V~l~~---g-r~i~G~L~~fD~hm 57 (108)
+.+++ |+.|.|.|+. | +.++|+|.++|+-.
T Consensus 9 f~r~~--G~~v~v~l~~p~~g~k~f~G~L~~~~~~~ 42 (74)
T d1ib8a1 9 VAGAV--GKYIHVGLYQAIDKQKVFEGTLLAFEEDE 42 (74)
T ss_dssp HHHHC--SEEEEEECSSCSSSCSEEEEEEEEEETTE
T ss_pred HHHhC--CCEEEEEEecccCCceEEEEEEEeecCCe
Confidence 46677 9999999864 3 68999999999864
No 20
>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=57.10 E-value=4.5 Score=26.40 Aligned_cols=31 Identities=6% Similarity=0.074 Sum_probs=26.0
Q ss_pred CcEEEEEecCCeEEEEEEEEecCccceEeec
Q 033937 33 NTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 63 (108)
Q Consensus 33 ~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d 63 (108)
..++.|.+.||+.+.+.+.++|....|.|-.
T Consensus 58 ~~~i~v~~~dg~~~~a~vi~~d~~~DlAll~ 88 (221)
T d2z9ia2 58 PPKTTVTFSDGRTAPFTVVGADPTSDIAVVR 88 (221)
T ss_dssp --EEEEEETTSCEECCEEEEEETTTTEEEEE
T ss_pred CceEEEEcCCceeeeeeeEeeccccceeeee
Confidence 4678999999999999999999999986643
No 21
>d1y0ya1 b.49.3.1 (A:73-163) Frv operon protein FrvX {Pyrococcus horikoshii [TaxId: 53953]}
Probab=52.24 E-value=7.8 Score=22.64 Aligned_cols=20 Identities=10% Similarity=-0.012 Sum_probs=17.8
Q ss_pred CCcEEEEEecCCeEEEEEEE
Q 033937 32 NNTQVLINCRNNKKLLGRVR 51 (108)
Q Consensus 32 ~~krV~V~l~~gr~i~G~L~ 51 (108)
.+++|+|.+++|+.+.|.+-
T Consensus 27 ~gq~v~i~t~~g~~~~Gv~~ 46 (91)
T d1y0ya1 27 IAQRFKVWIDKGKFIYGVGA 46 (91)
T ss_dssp TTCEEEEEEETTEEEEEEEE
T ss_pred ccCEEEEEeCCCCEEEEEEC
Confidence 39999999999999999753
No 22
>d2grea1 b.49.3.1 (A:74-186) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]}
Probab=50.65 E-value=6.3 Score=24.04 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=17.5
Q ss_pred CcEEEEEecCCeEEEEEEE
Q 033937 33 NTQVLINCRNNKKLLGRVR 51 (108)
Q Consensus 33 ~krV~V~l~~gr~i~G~L~ 51 (108)
+++|+|.+++|+.|.|.+-
T Consensus 28 gq~V~I~t~~G~~i~Gvig 46 (113)
T d2grea1 28 GEYCEIETSSGKTYTGTIL 46 (113)
T ss_dssp TCEEEEECTTSCEEEEEEE
T ss_pred cCEEEEEcCCCCEEEEEEe
Confidence 8999999999999999863
No 23
>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.75 E-value=19 Score=22.97 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=28.7
Q ss_pred hhCCcEEEEEecCCeEEEEEEEEecCccceEeec
Q 033937 30 VKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 63 (108)
Q Consensus 30 ~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d 63 (108)
+....++.|.+.+|+.+.++++++|....+.|--
T Consensus 62 v~~~~~i~V~~~~g~~~~a~vv~~d~~~dlall~ 95 (205)
T d1lcya2 62 VADRRRVRVRLLSGDTYEAVVTAVDPVADIATLR 95 (205)
T ss_dssp HTTCSEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred hhhhhhccccccccccccceeeeeecceeeEEEE
Confidence 4456789999999999999999999998887643
No 24
>d1zq1a1 b.38.3.1 (A:2-75) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}
Probab=42.43 E-value=12 Score=21.42 Aligned_cols=43 Identities=16% Similarity=0.090 Sum_probs=32.4
Q ss_pred HHHHhh-hhCCcEEEEEecCC---eEEEEEEE-----EecCccceEeeceEE
Q 033937 24 SVLMMS-VKNNTQVLINCRNN---KKLLGRVR-----AFDRHCNMVLENVRE 66 (108)
Q Consensus 24 ~~L~~~-~~~~krV~V~l~~g---r~i~G~L~-----~fD~hmNlvL~d~~E 66 (108)
.+|... +.-|.+|+|..+++ .+++|+|. +=|.|.=|-|++-.-
T Consensus 4 ~fl~~~~~~~GD~Vri~~~~~~~~~~~eGilmP~~e~s~~~~ivlKL~nGYN 55 (74)
T d1zq1a1 4 EFLKERNINVGDFVRITKEEDGEEVTYEGYIMPPYELSAGDTLVLKLENGYN 55 (74)
T ss_dssp HHHHHTTCCTTCEEEEEEESSSSEEECCEEECCCCTTCCCSEEEEEETTSCE
T ss_pred HHHHHcCCCCCCEEEEEEecCCCceEEEEEEcCCcccCCCCEEEEEecCcee
Confidence 355553 56699999999776 48999998 668888888877443
No 25
>d1rqpa1 b.141.1.1 (A:193-298) 5'-fluoro-5'-deoxyadenosine synthase {Streptomyces cattleya [TaxId: 29303]}
Probab=40.45 E-value=9.2 Score=22.90 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=18.8
Q ss_pred CCeEEEEEEEEec-CccceEee
Q 033937 42 NNKKLLGRVRAFD-RHCNMVLE 62 (108)
Q Consensus 42 ~gr~i~G~L~~fD-~hmNlvL~ 62 (108)
+|..+.|.+.-.| +|=|++..
T Consensus 6 ~~~~i~G~V~~iDh~FGN~iTN 27 (106)
T d1rqpa1 6 DGEALVGVVSAIDHPFGNVWTN 27 (106)
T ss_dssp ETTEEEEEEEEEETTTTEEEEE
T ss_pred cCCEEEEEEEEEecCCCcEEEe
Confidence 5789999999999 69999975
No 26
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.86 E-value=17 Score=20.05 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=19.8
Q ss_pred hCCcEEEEEecCCeEEEEEEEEe
Q 033937 31 KNNTQVLINCRNNKKLLGRVRAF 53 (108)
Q Consensus 31 ~~~krV~V~l~~gr~i~G~L~~f 53 (108)
..|.+|.-+-+|||.+.|.+.+.
T Consensus 4 ~~Gq~VI~KhkNgryY~c~V~~~ 26 (59)
T d2qqra1 4 TAGQKVISKHKNGRFYQCEVVRL 26 (59)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEE
T ss_pred ccccEEEEEccCCcEEEEEEEEe
Confidence 34899999999999999988764
No 27
>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}
Probab=34.21 E-value=30 Score=23.09 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=28.4
Q ss_pred hCCcEEEEEecCCeEEEEEEEEecCccceEeec
Q 033937 31 KNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 63 (108)
Q Consensus 31 ~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d 63 (108)
.....+.|.+.+++.+.+++++.|....+.|-.
T Consensus 98 ~~~~~~~v~~~~~~~~~a~~~~~d~~~dlavl~ 130 (249)
T d1ky9a2 98 DNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQ 130 (249)
T ss_dssp TTEEEEEEEETTSCEEEEEEEEEETTTTEEEEE
T ss_pred ccceeeeeeecccccccceeeEeccchhhceee
Confidence 345688899999999999999999999888754
No 28
>d1yloa1 b.49.3.1 (A:67-147) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]}
Probab=33.72 E-value=22 Score=20.18 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=18.4
Q ss_pred CCcEEEEEecCCeEEEEEEEE
Q 033937 32 NNTQVLINCRNNKKLLGRVRA 52 (108)
Q Consensus 32 ~~krV~V~l~~gr~i~G~L~~ 52 (108)
.+++|+|.+++|+.+.|.+.+
T Consensus 27 ~gq~V~i~t~~G~~~~~~~~~ 47 (81)
T d1yloa1 27 QLQPVRITTREECKIPGLLDG 47 (81)
T ss_dssp SSEEEEEECTTCCEEEEEEEE
T ss_pred CCCEEEEEcCCCCCCceEECC
Confidence 489999999999999998754
No 29
>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=31.35 E-value=34 Score=21.72 Aligned_cols=35 Identities=6% Similarity=0.248 Sum_probs=29.8
Q ss_pred hhCCcEEEEEecCCeEEEEEEEEecCccceEeece
Q 033937 30 VKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 64 (108)
Q Consensus 30 ~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d~ 64 (108)
+.....|.|.+.+++.+...+.+.|....+.|-..
T Consensus 56 V~~~~~i~v~~~~~~~~~~~~~~~~~~~Dlall~~ 90 (210)
T d2qf3a1 56 INDADQIIVALQDGRVFEALLVGSDSLTDLAVLKI 90 (210)
T ss_dssp HTTCSEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred cccccccccccccccceeeEEeccccccchhheec
Confidence 34557899999999999999999999999887553
No 30
>d2d6fa1 b.38.3.1 (A:2-73) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=26.71 E-value=41 Score=18.99 Aligned_cols=42 Identities=29% Similarity=0.304 Sum_probs=29.5
Q ss_pred HHHHhh-hhCCcEEEEEecCCeEEEEEEE-----EecCccceEeeceEE
Q 033937 24 SVLMMS-VKNNTQVLINCRNNKKLLGRVR-----AFDRHCNMVLENVRE 66 (108)
Q Consensus 24 ~~L~~~-~~~~krV~V~l~~gr~i~G~L~-----~fD~hmNlvL~d~~E 66 (108)
.+|.+. +.-|-+|+|. +++..++|+|. +=|.|.=|-|++-.-
T Consensus 8 ~fL~~~~i~vGD~V~i~-~~~~~~eGilmP~~e~sd~~~iVlKL~nGYN 55 (72)
T d2d6fa1 8 KFLESASIDVGDMVLVE-KPDVTYEGMVLDRADDADDRHIVLKLENGYN 55 (72)
T ss_dssp HHHHTTTCCTTCEEEEE-CSSCEEEEEECCCCTTSCSSEEEEECTTSCE
T ss_pred HHHHHcCCCCCCEEEEE-ECCcEEEEEEcCCcccCCCCEEEEEecCcee
Confidence 455543 3458999998 57899999997 345677777776443
No 31
>d1sg5a1 b.137.1.2 (A:1-86) Inhibitor of Rho Rof {Escherichia coli [TaxId: 562]}
Probab=22.87 E-value=23 Score=20.63 Aligned_cols=25 Identities=12% Similarity=0.312 Sum_probs=19.4
Q ss_pred HHHhhhhCCcEEEEEecCCeEEEEE
Q 033937 25 VLMMSVKNNTQVLINCRNNKKLLGR 49 (108)
Q Consensus 25 ~L~~~~~~~krV~V~l~~gr~i~G~ 49 (108)
.|.-+.--+.++++.++||..+.|+
T Consensus 17 yLEiaC~~~~~l~l~l~dG~~~~g~ 41 (86)
T d1sg5a1 17 NLELACQHHLMLTLELKDGEKLQAK 41 (86)
T ss_dssp HHHHHHTTTTCEEEECTTTCCEEES
T ss_pred HHHHHHHcCCcEEEEEeCCCEEEEE
Confidence 4554444589999999999999994
No 32
>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.45 E-value=22 Score=19.71 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=19.0
Q ss_pred CcEEEEEecCCeEEEEEEEEecC
Q 033937 33 NTQVLINCRNNKKLLGRVRAFDR 55 (108)
Q Consensus 33 ~krV~V~l~~gr~i~G~L~~fD~ 55 (108)
-.+|.|.+-||..+++++...|.
T Consensus 5 ~~~i~iRlPdG~~~~~~F~~~~t 27 (82)
T d1h8ca_ 5 VSKLRIRTPSGEFLERRFLASNK 27 (82)
T ss_dssp CEEEEEECTTSCEEEEEECTTSB
T ss_pred cEEEEEECCCCCEEEEEECCCCc
Confidence 46899999999999998766554
No 33
>d1nvpd2 b.56.1.1 (D:54-99) Small chain TOA2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.34 E-value=52 Score=16.97 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=18.2
Q ss_pred EEEEEEEEe---cCccceEeeceEEE
Q 033937 45 KLLGRVRAF---DRHCNMVLENVREM 67 (108)
Q Consensus 45 ~i~G~L~~f---D~hmNlvL~d~~E~ 67 (108)
.+.|.|..| |.-|=++|.|++-.
T Consensus 4 tfKG~L~tYRfCDnVWTFilkdv~fk 29 (46)
T d1nvpd2 4 NFRGSLNTYRFCDNVWTFVLNDVEFR 29 (46)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEeeeeccCCcEEEEEEeceEEe
Confidence 567877665 99999999998743
No 34
>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.59 E-value=28 Score=21.21 Aligned_cols=23 Identities=9% Similarity=0.163 Sum_probs=15.8
Q ss_pred hhhhCCcEEEEEecCCeEEEEEE
Q 033937 28 MSVKNNTQVLINCRNNKKLLGRV 50 (108)
Q Consensus 28 ~~~~~~krV~V~l~~gr~i~G~L 50 (108)
..+..+.||.|...++..-+|+|
T Consensus 31 ~~~~VG~rv~V~~~~~~~r~G~v 53 (113)
T d1whga_ 31 SAISVGSRCEVRAPDHSLRRGTV 53 (113)
T ss_dssp TTSCSSCEEEECCSSSSCEEEEE
T ss_pred ccCcCCCEEEEEcCCCCceEEEE
Confidence 34566999999998774444544
No 35
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.64 E-value=6.9 Score=21.88 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=33.0
Q ss_pred cHHHHHhhhhCCcEEEEEecCCeEEEEEEEEecCccceEeec
Q 033937 22 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 63 (108)
Q Consensus 22 Pl~~L~~~~~~~krV~V~l~~gr~i~G~L~~fD~hmNlvL~d 63 (108)
|.+-|+++++.|..|+|.-=.-..-+|.++..++..=++|+|
T Consensus 3 p~~~LrK~F~~GDhVkVi~G~~~g~tGlVV~v~~~~v~~~SD 44 (62)
T d2do3a1 3 PAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSD 44 (62)
T ss_dssp CCCCCCSSCCTTCEEEESSSTTTTCEEEEEEECSSCEEEEES
T ss_pred ChHHheeccCCCCeEEEeccEEcCccEEEEEEeCCEEEEEeC
Confidence 555578888889988876543446889999999988888888
Done!