BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033938
(108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G5U|A Chain A, Latex Profilin Hevb8
pdb|1G5U|B Chain B, Latex Profilin Hevb8
Length = 131
Score = 172 bits (435), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 1 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
MSWQTYVDDHLMCDIDGH LT+AAI+GHDGSVWAQSS+FPQFK +E+AA+MKDF+EPGSL
Sbjct: 1 MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSSFPQFKSDEVAAVMKDFDEPGSL 60
Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
APTGLHLGGTKYMVIQGEPGAVIRGKK
Sbjct: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
>pdb|1CQA|A Chain A, Birch Pollen Profilin
Length = 133
Score = 155 bits (393), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 74/89 (83%), Positives = 79/89 (88%), Gaps = 2/89 (2%)
Query: 1 MSWQTYVDDHLMCDIDGH--HLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPG 58
MSWQTYVD+HLMCDIDG L ++AIVGHDGSVWAQSS+FPQFKP+EI IMKDFEEPG
Sbjct: 1 MSWQTYVDEHLMCDIDGQGEELAASAIVGHDGSVWAQSSSFPQFKPQEITGIMKDFEEPG 60
Query: 59 SLAPTGLHLGGTKYMVIQGEPGAVIRGKK 87
LAPTGLHLGG KYMVIQGE GAVIRGKK
Sbjct: 61 HLAPTGLHLGGIKYMVIQGEAGAVIRGKK 89
>pdb|1A0K|A Chain A, Profilin I From Arabidopsis Thaliana
Length = 131
Score = 151 bits (382), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 69/87 (79%), Positives = 77/87 (88%)
Query: 1 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
MSWQ+YVDDHLMCD++G+HLT+AAI+G DGSVWAQS+ FPQ KP+EI I KDFEEPG L
Sbjct: 1 MSWQSYVDDHLMCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFL 60
Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
APTGL LGG KYMVIQGE GAVIRGKK
Sbjct: 61 APTGLFLGGEKYMVIQGEQGAVIRGKK 87
>pdb|3NUL|A Chain A, Profilin I From Arabidopsis Thaliana
Length = 130
Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 74/86 (86%)
Query: 2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLA 61
SWQ+YVDDHL CD++G+HLT+AAI+G DGSVWAQS+ FPQ KP+EI I KDFEEPG LA
Sbjct: 1 SWQSYVDDHLXCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFLA 60
Query: 62 PTGLHLGGTKYMVIQGEPGAVIRGKK 87
PTGL LGG KY VIQGE GAVIRGKK
Sbjct: 61 PTGLFLGGEKYXVIQGEQGAVIRGKK 86
>pdb|1F2K|A Chain A, Crystal Structure Of Acanthamoeba Castellanii Profilin
Ii, Cubic Crystal Form
pdb|1F2K|B Chain B, Crystal Structure Of Acanthamoeba Castellanii Profilin
Ii, Cubic Crystal Form
pdb|2ACG|A Chain A, Acanthamoeba Castellanii Profilin Ii
Length = 125
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLA 61
SWQTYVD +L+ +T AAI+GHDG+ WA S+ F P AA+ F++ ++
Sbjct: 1 SWQTYVDTNLVGT---GAVTQAAIIGHDGNTWATSAGFA-VSPANGAALANAFKDATAIR 56
Query: 62 PTGLHLGGTKYMVIQGEPGAVIRGKK 87
G L GT+Y+ I+ + +V GKK
Sbjct: 57 SNGFELAGTRYVTIRADDRSVY-GKK 81
>pdb|3D9Y|A Chain A, Crystal Structure Of Profilin From Schizosaccharomyces
Pombe
pdb|3D9Y|B Chain B, Crystal Structure Of Profilin From Schizosaccharomyces
Pombe
pdb|3DAV|A Chain A, Schizosaccharomyces Pombe Profilin Crystallized From
Sodium Formate
pdb|3DAV|B Chain B, Schizosaccharomyces Pombe Profilin Crystallized From
Sodium Formate
Length = 127
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 1 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDG-SVWAQSSNFPQFKPEEIAAIMKDFEEPGS 59
MSWQ YVD L+ + AAIV G SVWA S+ F P+EI + F++P S
Sbjct: 1 MSWQAYVDTSLLGT---GKIDRAAIVSRAGDSVWAASAGF-NLSPQEIQGLAAGFQDPPS 56
Query: 60 LAPTGLHLGGTKYMVIQGEPGAVIRGK 86
+ TG+ L G KY+ I+ E G I GK
Sbjct: 57 MFGTGIILAGQKYITIRAE-GRSIYGK 82
>pdb|1ACF|A Chain A, Acanthamoeba Castellanii Profilin Ib
Length = 125
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLA 61
SWQTYVD +L+ +T AAI+G DG+ WA S+ F P + + F ++
Sbjct: 1 SWQTYVDTNLVGT---GAVTQAAILGLDGNTWATSAGFA-VTPAQGTTLAGAFNNADAIR 56
Query: 62 PTGLHLGGTKYMVIQGEPGAVIRGKK 87
G L G Y+ ++ + + I GKK
Sbjct: 57 AGGFDLAGVHYVTLRADDRS-IYGKK 81
>pdb|1PRQ|A Chain A, Acanthamoeba Castellanii Profilin Ia
pdb|2PRF|A Chain A, Three Dimensional Solution Structure Of Acanthamoeba
Profilin I
Length = 125
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLA 61
SWQTYVD +L+ +T AAI+G DG+ WA S+ F P + + F +
Sbjct: 1 SWQTYVDTNLVGT---GAVTQAAILGLDGNTWATSAGFA-VTPAQGQTLASAFNNADPIR 56
Query: 62 PTGLHLGGTKYMVIQGEPGAVIRGKK 87
+G L G Y+ ++ + + I GKK
Sbjct: 57 ASGFDLAGVHYVTLRADDRS-IYGKK 81
>pdb|1YPR|A Chain A, Saccharomyces Cerevisiae (Yeast) Profilin
pdb|1YPR|B Chain B, Saccharomyces Cerevisiae (Yeast) Profilin
pdb|1K0K|A Chain A, Yeast Profilin, Cubic Crystal Form
Length = 125
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 17/104 (16%)
Query: 2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDG-SVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
SWQ Y D+ I + A I G +VWA S +P EI I++ F+ P L
Sbjct: 1 SWQAYTDNL----IGTGKVDKAVIYSRAGDAVWATSGGLS-LQPNEIGEIVQGFDNPAGL 55
Query: 61 APTGLHLGGTKYMVIQGEPGAV-----------IRGKKVIYFSH 93
GLH+ G K+M+++ + ++ +R K+ + +H
Sbjct: 56 QSNGLHIQGQKFMLLRADDRSIYGRHDAEGVVCVRTKQTVIIAH 99
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 32.0 bits (71), Expect = 0.087, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 27 GHDGSVWAQSSNF-PQFKPEEIAAIMKDFEEPGSLAPTGLHLGG 69
GH S W + N+ PQ E +A ++++ PG+ G+ LGG
Sbjct: 115 GHGHSAWREDGNYSPQLNSETLAPVLREL-APGAEFVVGMSLGG 157
>pdb|3A9G|A Chain A, Crystal Structure Of Pqq-Dependent Sugar Dehydrogenase
Apo-Form
pdb|3A9H|A Chain A, Crystal Structure Of Pqq-Dependent Sugar Dehydrogenase
Holo-Form
Length = 354
Score = 29.3 bits (64), Expect = 0.55, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 12/53 (22%)
Query: 41 QFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVI----RGKKVI 89
+FK E+A+ D E P S+AP LGG +Y+V + PG ++ GKK++
Sbjct: 18 KFKISEVAS---DLEVPWSIAP----LGGGRYLVTE-RPGRLVLISPSGKKLV 62
>pdb|3BU7|A Chain A, Crystal Structure And Biochemical Characterization Of
Gdosp, A Gentisate 1,2-Dioxygenase From Silicibacter
Pomeroyi
pdb|3BU7|B Chain B, Crystal Structure And Biochemical Characterization Of
Gdosp, A Gentisate 1,2-Dioxygenase From Silicibacter
Pomeroyi
Length = 394
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 57 PGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKVIYFSHNITFCIDSIT 103
PG H G Y V +G+ +++ GK+ + H+I FC+ + T
Sbjct: 303 PGEHTKAHRHTGNVIYNVAKGQGYSIVGGKRFDWSEHDI-FCVPAWT 348
>pdb|3P8C|B Chain B, Structure And Control Of The Actin Regulatory Wave Complex
Length = 1128
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 24 AIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGL 65
A V H GS+ + F + +E+A ++ D +PG L P L
Sbjct: 330 AAVSHAGSMHRERRKFLRSALKELATVLSD--QPGLLGPKAL 369
>pdb|3NEC|A Chain A, Crystal Structure Of Toxoplasma Gondii Profilin
pdb|3NEC|B Chain B, Crystal Structure Of Toxoplasma Gondii Profilin
pdb|3NEC|C Chain C, Crystal Structure Of Toxoplasma Gondii Profilin
pdb|3NEC|D Chain D, Crystal Structure Of Toxoplasma Gondii Profilin
Length = 166
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 48 AAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPG 80
A+ +K + GS AP G+ +GG KY V++ E G
Sbjct: 73 ASTIKAAVDDGS-APNGVWIGGQKYKVVRPEKG 104
>pdb|3I3L|A Chain A, Crystal Structure Of Cmls, A Flavin-Dependent Halogenase
Length = 591
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 60 LAPTGLHLGGTKYMVIQGEPGAVIRGKKVIYFSHNIT 96
L P G H+ +K +I G P + G + H++T
Sbjct: 14 LVPRGSHMTRSKVAIIGGGPAGSVAGLTLHKLGHDVT 50
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 13 CDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLG 68
C +DG AA++G + F + + + +K EP +AP G +G
Sbjct: 328 CHVDGFRFDLAAVMGRTPEFRQDAPLFTAIQNCPVLSQVKLIAEPWDIAPGGYQVG 383
>pdb|2A67|A Chain A, Crystal Structure Of Isochorismatase Family Protein
pdb|2A67|B Chain B, Crystal Structure Of Isochorismatase Family Protein
pdb|2A67|C Chain C, Crystal Structure Of Isochorismatase Family Protein
pdb|2A67|D Chain D, Crystal Structure Of Isochorismatase Family Protein
Length = 167
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 15 IDGHHLTSAAIVGHDGSVWA 34
+D HLT+A I+ H ++WA
Sbjct: 139 LDNGHLTAAQIIQHHEAIWA 158
>pdb|4EXL|A Chain A, Crystal Structure Of Putative Phosphate Abc Transporter,
Periplasmic Phosphate-Binding Protein Psts 1 (Pbp1) From
Streptococcus Pneumoniae Canada Mdr_19a
pdb|4EXL|B Chain B, Crystal Structure Of Putative Phosphate Abc Transporter,
Periplasmic Phosphate-Binding Protein Psts 1 (Pbp1) From
Streptococcus Pneumoniae Canada Mdr_19a
pdb|4EXL|C Chain C, Crystal Structure Of Putative Phosphate Abc Transporter,
Periplasmic Phosphate-Binding Protein Psts 1 (Pbp1) From
Streptococcus Pneumoniae Canada Mdr_19a
pdb|4EXL|D Chain D, Crystal Structure Of Putative Phosphate Abc Transporter,
Periplasmic Phosphate-Binding Protein Psts 1 (Pbp1) From
Streptococcus Pneumoniae Canada Mdr_19a
Length = 265
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 5 TYVDDHLMC-DIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDF 54
TY+DD + ++G+ L+ I ++ +W+ + +P E+AA +F
Sbjct: 176 TYIDDSVKSMKLNGYDLSPENISSNNWPLWSYEHMYTLGQPNELAAEFLNF 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,816,437
Number of Sequences: 62578
Number of extensions: 144161
Number of successful extensions: 353
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 334
Number of HSP's gapped (non-prelim): 18
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)