Query 033938
Match_columns 108
No_of_seqs 102 out of 397
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 08:00:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00316 profilin; Provisional 100.0 4.4E-38 9.5E-43 224.1 12.4 101 1-106 1-105 (150)
2 smart00392 PROF Profilin. Bind 100.0 7.4E-36 1.6E-40 207.6 12.1 101 1-106 1-103 (129)
3 cd00148 PROF Profilin binds ac 100.0 2.2E-35 4.8E-40 205.0 12.4 99 2-106 1-101 (127)
4 PF00235 Profilin: Profilin; 100.0 1.6E-32 3.4E-37 187.4 9.4 99 2-105 1-99 (121)
5 KOG1755 Profilin [Cytoskeleton 100.0 1.7E-31 3.8E-36 185.7 10.6 99 1-104 1-100 (128)
6 PF03259 Robl_LC7: Roadblock/L 86.7 0.44 9.6E-06 29.7 1.6 72 10-86 8-79 (91)
7 COG2018 Uncharacterized distan 82.6 7.6 0.00016 27.0 6.3 81 17-99 16-97 (119)
8 PF14584 DUF4446: Protein of u 67.7 9.6 0.00021 27.3 3.8 30 23-53 115-150 (151)
9 PF02911 Formyl_trans_C: Formy 64.7 33 0.0007 21.6 8.1 61 38-104 10-79 (100)
10 PF05176 ATP-synt_10: ATP10 pr 58.1 11 0.00024 29.0 2.9 31 22-55 219-250 (252)
11 PRK00468 hypothetical protein; 49.5 32 0.0007 21.7 3.6 44 47-90 5-51 (75)
12 PF13734 Inhibitor_I69: Spi pr 49.1 14 0.00031 24.5 2.0 17 37-54 3-19 (96)
13 PF10144 SMP_2: Bacterial viru 45.9 26 0.00057 26.3 3.2 26 10-38 80-105 (210)
14 PRK02821 hypothetical protein; 43.2 37 0.00079 21.6 3.1 44 47-90 6-52 (77)
15 PF02770 Acyl-CoA_dh_M: Acyl-C 39.8 23 0.00051 20.1 1.7 17 62-78 24-40 (52)
16 TIGR00460 fmt methionyl-tRNA f 37.7 2E+02 0.0042 22.5 8.6 37 38-78 212-248 (313)
17 COG1837 Predicted RNA-binding 36.8 73 0.0016 20.3 3.7 44 47-90 5-51 (76)
18 PF07494 Reg_prop: Two compone 35.6 56 0.0012 15.7 2.5 17 22-38 8-24 (24)
19 PF01509 TruB_N: TruB family p 34.6 60 0.0013 22.9 3.4 44 29-73 60-106 (149)
20 PF05228 CHASE4: CHASE4 domain 34.5 39 0.00085 22.8 2.4 71 5-76 34-117 (161)
21 PF01436 NHL: NHL repeat; Int 31.8 58 0.0013 16.2 2.2 10 98-107 11-20 (28)
22 PRK01064 hypothetical protein; 31.5 1.1E+02 0.0024 19.4 4.0 44 47-90 5-51 (78)
23 COG4448 AnsA L-asparaginase II 31.5 24 0.00053 28.2 1.0 82 17-104 181-281 (339)
24 PF12527 DUF3727: Protein of u 31.2 1.5E+02 0.0032 20.0 4.6 64 32-95 11-80 (100)
25 PRK08125 bifunctional UDP-gluc 29.0 3.7E+02 0.008 23.0 8.6 60 38-104 209-276 (660)
26 TIGR02530 flg_new flagellar op 28.9 1.8E+02 0.0039 19.4 5.1 65 38-104 29-95 (96)
27 PF08356 EF_assoc_2: EF hand a 28.5 53 0.0012 21.5 2.1 31 41-71 3-35 (89)
28 COG4831 Roadblock/LC7 domain [ 27.8 2E+02 0.0043 19.5 6.8 64 7-78 5-86 (109)
29 cd09232 Snurportin-1_C C-termi 27.7 79 0.0017 23.2 3.1 33 68-100 30-63 (186)
30 PF03468 XS: XS domain; Inter 26.4 37 0.0008 23.1 1.1 19 82-100 48-66 (116)
31 COG2451 Ribosomal protein L35A 26.3 1.1E+02 0.0023 20.6 3.3 35 64-99 42-80 (100)
32 COG3726 AhpA Uncharacterized m 25.7 32 0.0007 26.1 0.8 72 6-99 77-148 (214)
33 cd00320 cpn10 Chaperonin 10 Kd 25.2 51 0.0011 21.4 1.6 18 61-78 70-87 (93)
34 PRK00005 fmt methionyl-tRNA fo 24.5 3.4E+02 0.0073 21.0 8.6 61 38-104 212-280 (309)
35 PF05952 ComX: Bacillus compet 24.2 87 0.0019 18.9 2.4 18 41-58 28-45 (57)
36 KOG3535 Adaptor protein Disabl 24.0 66 0.0014 27.3 2.3 19 81-99 136-154 (557)
37 PRK00364 groES co-chaperonin G 23.9 59 0.0013 21.2 1.7 17 62-78 72-88 (95)
38 PF04312 DUF460: Protein of un 23.8 2.3E+02 0.005 20.1 4.8 34 16-52 38-73 (138)
39 PRK11246 hypothetical protein; 23.5 1.1E+02 0.0023 23.4 3.2 27 10-39 80-106 (218)
40 PF00166 Cpn10: Chaperonin 10 23.0 1.2E+02 0.0026 19.4 3.1 17 62-78 71-87 (93)
41 PTZ00414 10 kDa heat shock pro 22.8 71 0.0015 21.4 1.9 19 60-78 74-92 (100)
42 cd01425 RPS2 Ribosomal protein 22.3 59 0.0013 23.7 1.6 33 61-96 2-34 (193)
43 PF13856 Gifsy-2: ATP-binding 22.0 1.1E+02 0.0023 19.6 2.7 20 60-79 67-86 (95)
44 PF10882 bPH_5: Bacterial PH d 22.0 1.5E+02 0.0033 18.6 3.4 24 81-105 62-85 (100)
45 COG4443 Uncharacterized protei 21.8 71 0.0015 20.1 1.7 18 38-56 54-71 (72)
46 KOG2500 Uncharacterized conser 21.7 1.4E+02 0.003 23.3 3.5 32 49-80 67-98 (253)
47 PF09176 Mpt_N: Methylene-tetr 21.6 27 0.0006 22.7 -0.2 31 41-71 20-53 (81)
48 PRK11649 putative peptidase; P 21.5 1E+02 0.0022 25.7 3.0 28 29-57 192-219 (439)
49 PRK12311 rpsB 30S ribosomal pr 21.3 37 0.0008 27.3 0.4 34 60-96 4-37 (326)
50 PHA02310 hypothetical protein 20.7 1.9E+02 0.0041 20.4 3.8 37 60-99 86-122 (130)
51 PRK14533 groES co-chaperonin G 20.6 82 0.0018 20.6 1.9 18 61-78 66-83 (91)
52 PF15409 PH_8: Pleckstrin homo 20.5 1.6E+02 0.0035 19.2 3.2 22 70-91 16-37 (89)
53 PF08127 Propeptide_C1: Peptid 20.1 65 0.0014 18.0 1.1 28 30-57 13-40 (41)
54 PRK06988 putative formyltransf 20.1 2.4E+02 0.0051 22.1 4.7 38 38-78 211-248 (312)
No 1
>PTZ00316 profilin; Provisional
Probab=100.00 E-value=4.4e-38 Score=224.14 Aligned_cols=101 Identities=34% Similarity=0.426 Sum_probs=95.3
Q ss_pred CchhhhhhhhcccccCCCccceEEEEec-CCCEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCC
Q 033938 1 MSWQTYVDDHLMCDIDGHHLTSAAIVGH-DGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEP 79 (108)
Q Consensus 1 MSWq~yvd~~Lv~~~~t~~v~~aaIig~-dG~vwA~s~gf~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~ 79 (108)
||||+|||++|++ ++++++|||+|+ ||++||+|++| +++|+|+++|+++|+||+.++.+||+|+|+||+++|+++
T Consensus 1 MSWQaYVD~~L~g---sg~v~kAAIiG~~DGsvWA~S~gF-~lspeE~~~I~~~F~d~~~l~~~Gi~l~G~KY~~lr~~~ 76 (150)
T PTZ00316 1 MSWQAYVDDSLIG---SGNMHSAAIVGLADGSYWAYGGSY-IPQPEEVAHILKCLGNFSLVQSSGVTIYGVKFFGLQSGT 76 (150)
T ss_pred CCHHHHHHhhhhc---cCCcceEEEEecCCCCEeecCCCC-ccCHHHHHHHHHHhcCCccccCCCEEEcceEEEEEEecc
Confidence 9999999999999 999999999997 99999999999 999999999999999999999999999999999999831
Q ss_pred ---CCeEEEecCCccEEEEEecCCcEEEee
Q 033938 80 ---GAVIRGKKVIYFSHNITFCIDSITLCD 106 (108)
Q Consensus 80 ---~~~iygkkg~~G~~~i~~~~~~~~~~~ 106 (108)
+++|||||+++|+|++||.+ -|+|+-
T Consensus 77 d~d~~~i~gKKg~~G~~i~kT~q-aiiI~~ 105 (150)
T PTZ00316 77 EGDMKYIFFKKGAAGGCIYTSKQ-TAIIAV 105 (150)
T ss_pred CCCcceEEEecCCCeEEEEEcCC-EEEEEE
Confidence 47999999999999999988 888863
No 2
>smart00392 PROF Profilin. Binds actin monomers, membrane polyphosphoinositides and poly-L-proline.
Probab=100.00 E-value=7.4e-36 Score=207.56 Aligned_cols=101 Identities=42% Similarity=0.597 Sum_probs=96.2
Q ss_pred CchhhhhhhhcccccCCCccceEEEEecCCCEEEecCC--CCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeC
Q 033938 1 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSN--FPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGE 78 (108)
Q Consensus 1 MSWq~yvd~~Lv~~~~t~~v~~aaIig~dG~vwA~s~g--f~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d 78 (108)
||||+|||++|++ ++++++|||+++||++||+|++ |..++|+|+++|+++|+||+.++++||+|+|+||+++|+|
T Consensus 1 MsWq~yvd~~l~~---~g~~~~AaI~g~dGsvWA~s~g~~f~~~~~~E~~~i~~~f~~~~~~~~~Gi~l~G~Ky~~~~~d 77 (129)
T smart00392 1 MSWQAYVDNLLVG---SGCVDAAAIGGKDGSVWAASAGGNFQKITPEEIAAIAALFNSLAAVFSNGLTLGGQKYMVIRAD 77 (129)
T ss_pred CChHHHHHHHhhc---cCCCcEEEEEeCCCCeeeccCCCCCCcCCHHHHHHHHHHccCcchhccCCeEECCeEEEEEEec
Confidence 9999999999999 9999999999999999999999 8558999999999999999889999999999999999999
Q ss_pred CCCeEEEecCCccEEEEEecCCcEEEee
Q 033938 79 PGAVIRGKKVIYFSHNITFCIDSITLCD 106 (108)
Q Consensus 79 ~~~~iygkkg~~G~~~i~~~~~~~~~~~ 106 (108)
++.+|+||++.|++++||.+ .|||+-
T Consensus 78 -~~~i~~kk~~~Gv~i~kT~~-aivI~~ 103 (129)
T smart00392 78 -DRSIMGKKGAGGVVIVKTKQ-ALIIGM 103 (129)
T ss_pred -CcEEEeecCCceEEEEECCC-EEEEEE
Confidence 89999999999999999988 888873
No 3
>cd00148 PROF Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline. Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway.
Probab=100.00 E-value=2.2e-35 Score=204.97 Aligned_cols=99 Identities=43% Similarity=0.714 Sum_probs=94.8
Q ss_pred chhhhhhhhcccccCCCccceEEEEecC-CCEEEecCC-CCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCC
Q 033938 2 SWQTYVDDHLMCDIDGHHLTSAAIVGHD-GSVWAQSSN-FPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEP 79 (108)
Q Consensus 2 SWq~yvd~~Lv~~~~t~~v~~aaIig~d-G~vwA~s~g-f~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~ 79 (108)
|||+|||++|++ +++|++|||+|+| |++||+|++ | +++|+|+++|+++|+||+.++++||+|+|+||+++|+|
T Consensus 1 sWq~yvd~~L~~---~g~~~~aAI~g~d~g~vwA~s~~~f-~~t~~E~~~i~~~f~d~~~~~~~Gi~l~G~KY~~l~~d- 75 (127)
T cd00148 1 SWQAYVDDNLLG---TGKVDSAAIVGHDDGSVWAASAGGF-NLTPEEVGTLVAGFKDPDGVFSTGLTLGGQKYMVIRAD- 75 (127)
T ss_pred ChHHHHHHHHhh---cCCcCEEEEEecCCCCeEEecCCCC-ccCHHHHHHHHHHccCccccccCCEEECCeEEEEEecC-
Confidence 899999999999 9999999999998 899999999 9 99999999999999999999999999999999999999
Q ss_pred CCeEEEecCCccEEEEEecCCcEEEee
Q 033938 80 GAVIRGKKVIYFSHNITFCIDSITLCD 106 (108)
Q Consensus 80 ~~~iygkkg~~G~~~i~~~~~~~~~~~ 106 (108)
++++|+||++.|++++||.. .|||+-
T Consensus 76 ~~~i~~kk~~~Gi~i~kT~~-~ivi~~ 101 (127)
T cd00148 76 DRSIYGKKGAGGVVIVKTKQ-ALVIGM 101 (127)
T ss_pred ccEEEeeeCCCeEEEEECCC-EEEEEE
Confidence 89999999999999999955 898873
No 4
>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin). It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....
Probab=99.98 E-value=1.6e-32 Score=187.37 Aligned_cols=99 Identities=39% Similarity=0.682 Sum_probs=94.1
Q ss_pred chhhhhhhhcccccCCCccceEEEEecCCCEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCCCC
Q 033938 2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGA 81 (108)
Q Consensus 2 SWq~yvd~~Lv~~~~t~~v~~aaIig~dG~vwA~s~gf~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~~ 81 (108)
|||+|||++|++ ++++++|||+|.||++||++++|++++|+|+++|+++|++|+.++.+||+|+|+||+++|+| ++
T Consensus 1 sW~~~i~~~L~~---~~~~~~aaI~~~dG~vwA~s~~f~~~~~~E~~~i~~~f~~~~~~~~~gi~l~G~kY~~~~~d-~~ 76 (121)
T PF00235_consen 1 SWQDYIDEQLIG---TGNITKAAIIGSDGSVWASSPGFSNISPEEAKAIIKAFNNPSKFPSNGITLGGKKYIVLRAD-DN 76 (121)
T ss_dssp THHHHHHTHHHT---TSSESEEEEEETTSSEEEEETTGGGCSHHHHHHHHHHHHSSSHHHHH-EEETTEEEEEEEEE-TT
T ss_pred ChhHHHHHHhcc---cCcEeEEEEEcCCCCEEEecCCCCCCCHHHHHHHHHHhcCchhcccCCeEEcCcEeEEEecC-Cc
Confidence 899999999999 89999999999999999999999899999999999999999888899999999999999999 89
Q ss_pred eEEEecCCccEEEEEecCCcEEEe
Q 033938 82 VIRGKKVIYFSHNITFCIDSITLC 105 (108)
Q Consensus 82 ~iygkkg~~G~~~i~~~~~~~~~~ 105 (108)
++|+|++++|++++||.. .|||+
T Consensus 77 ~i~~k~~~~G~~i~kt~~-~ivIg 99 (121)
T PF00235_consen 77 SIYGKKGKGGIIIVKTKQ-AIVIG 99 (121)
T ss_dssp EEEEEETTEEEEEEECSS-EEEEE
T ss_pred eEEeeCCCCcEEEEECCC-EEEEE
Confidence 999999999999999976 88886
No 5
>KOG1755 consensus Profilin [Cytoskeleton]
Probab=99.97 E-value=1.7e-31 Score=185.67 Aligned_cols=99 Identities=54% Similarity=0.848 Sum_probs=93.7
Q ss_pred CchhhhhhhhcccccCCCccceEEEEecCC-CEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCC
Q 033938 1 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDG-SVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEP 79 (108)
Q Consensus 1 MSWq~yvd~~Lv~~~~t~~v~~aaIig~dG-~vwA~s~gf~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~ 79 (108)
||||+|||++|++ +++|++|||+|+|| +|||+|++| +++|+|+..+++.|+||..++.+|++|+|+||+++|+|.
T Consensus 1 ~~Wq~Yvd~~l~~---~~~v~~AAIvg~~~~SVWA~S~~f-~~~~~e~~~~v~~F~d~~~~~~~Gl~L~Gqkylv~~ge~ 76 (128)
T KOG1755|consen 1 MSWQAYVDDHLLG---TGHVTRAAIVGYDGGSVWAASAGF-NVKPSEIPAIVAGFKDPGGLAGTGLTLGGQKYLVVRGEE 76 (128)
T ss_pred CCHHHHHHHhhcc---ccccceeeEEecCCCeeEEecCCC-cccHHHHHHHHhcccCcccccccceeecccEEEEEeccc
Confidence 9999999999999 99999999999966 999999999 999999999999999999999999999999999999997
Q ss_pred CCeEEEecCCccEEEEEecCCcEEE
Q 033938 80 GAVIRGKKVIYFSHNITFCIDSITL 104 (108)
Q Consensus 80 ~~~iygkkg~~G~~~i~~~~~~~~~ 104 (108)
+.++|||++.+|+++.||.. -+++
T Consensus 77 ~~~~~gk~~~~gv~i~kT~~-~li~ 100 (128)
T KOG1755|consen 77 GRVIRGKEGTGGVTIKKTGQ-ALIF 100 (128)
T ss_pred ceEEecccCCCcEEEEEcce-EEEE
Confidence 78999999999999999987 4444
No 6
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=86.70 E-value=0.44 Score=29.66 Aligned_cols=72 Identities=22% Similarity=0.186 Sum_probs=40.9
Q ss_pred hcccccCCCccceEEEEecCCCEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCCCCeEEEe
Q 033938 10 HLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGK 86 (108)
Q Consensus 10 ~Lv~~~~t~~v~~aaIig~dG~vwA~s~gf~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~~~iygk 86 (108)
.|.. .+.+..++|++.||.+-++ .++....++++..+...+-.......+-+..+..+++.++.+ +..++-.
T Consensus 8 ~l~~---~~gv~~~~l~~~dG~~i~~-~~~~~~~~~~~aa~~a~~~~~~~~~~~~l~~~~~~~v~i~~~-~~~i~i~ 79 (91)
T PF03259_consen 8 ELQS---VPGVRGAVLVDKDGLVIAS-SGIDDDDAEKLAAMAASLLAAAEKLAKELGEGELEQVRIETE-KGEIIIT 79 (91)
T ss_dssp HHHH---STTEEEEEEEETTSEEEEE-TSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEEEES-SEEEEEE
T ss_pred HHhC---CCCeeEEEEEcCCCCEEEE-ecCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEC-CCEEEEE
Confidence 4555 7789999999999998887 333122334444333332111001112222677888888888 4444433
No 7
>COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only]
Probab=82.58 E-value=7.6 Score=26.96 Aligned_cols=81 Identities=17% Similarity=-0.001 Sum_probs=52.4
Q ss_pred CCccceEEEEecCCCEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCCCCeEEE-ecCCccEEEE
Q 033938 17 GHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRG-KKVIYFSHNI 95 (108)
Q Consensus 17 t~~v~~aaIig~dG~vwA~s~gf~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~~~iyg-kkg~~G~~~i 95 (108)
.+.+..++|++.||-+-|+.-.+ +...+-+..+.+..=........=+--+...++.++.. ...++. .-|..+++.+
T Consensus 16 v~gv~ga~Ivs~DGL~ia~~~p~-~~d~e~vaA~~a~~~g~~er~~~~l~~g~leqi~I~g~-~g~i~l~~~g~~~il~~ 93 (119)
T COG2018 16 VPGVRGALVVSKDGLPIAAELPG-NVDAEIVAAMAATALGLAERAADELGGGELEQIMIEGK-KGKILLYDAGDDAILVV 93 (119)
T ss_pred ccCceEEEEEccCCceEeecCCC-cccHHHHHHHHHHHHHHhHHHHHHhCCCCceEEEEecc-ccEEEEEEcCCceEEEE
Confidence 56899999999999988877666 66666666655543222223334456677888888888 445554 4455666655
Q ss_pred EecC
Q 033938 96 TFCI 99 (108)
Q Consensus 96 ~~~~ 99 (108)
=++.
T Consensus 94 ~a~~ 97 (119)
T COG2018 94 LADE 97 (119)
T ss_pred EcCC
Confidence 4443
No 8
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=67.70 E-value=9.6 Score=27.25 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=22.0
Q ss_pred EEEEecCCC-EEEec-----CCCCCCCHHHHHHHHHh
Q 033938 23 AAIVGHDGS-VWAQS-----SNFPQFKPEEIAAIMKD 53 (108)
Q Consensus 23 aaIig~dG~-vwA~s-----~gf~~~t~~E~~~l~~~ 53 (108)
-.|+|.+++ +||.. +.+ .++|||.+.|..|
T Consensus 115 tsI~~Re~s~~YaK~I~~G~S~~-~LS~EE~eal~~A 150 (151)
T PF14584_consen 115 TSIHSREESRTYAKPIVNGQSSY-PLSEEEKEALEKA 150 (151)
T ss_pred EeeecCCCcEEEEEEecCCcccc-cCCHHHHHHHHHh
Confidence 356677775 78862 236 8999999999875
No 9
>PF02911 Formyl_trans_C: Formyl transferase, C-terminal domain; InterPro: IPR005793 Methionyl-tRNA formyltransferase (2.1.2.9 from EC) transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. This family also includes formyltetrahydrofolate dehydrogenases, which produce formate from formyl-tetrahydrofolate. These enzymes contain an N-terminal domain in common with other formyl transferase enzymes (IPR002376 from INTERPRO). The C-terminal domain has an open beta-barrel fold [].; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3RFO_D 1Z7E_C 2BLN_A 1YRW_A 1FMT_A 2FMT_B 3Q0I_A 3R8X_A 3TQQ_A 2BW0_A ....
Probab=64.68 E-value=33 Score=21.58 Aligned_cols=61 Identities=13% Similarity=0.229 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCC---------CCeEEEecCCccEEEEEecCCcEEE
Q 033938 38 NFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEP---------GAVIRGKKVIYFSHNITFCIDSITL 104 (108)
Q Consensus 38 gf~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~---------~~~iygkkg~~G~~~i~~~~~~~~~ 104 (108)
+| +-+.+|+..++.+|. | .+..=..++|++..+.++.. +..+...... .+.|+|.++-|.|
T Consensus 10 dw-~~~A~~I~~~vRal~-p--~pga~~~~~~~~i~i~~~~~~~~~~~~~~pG~i~~~~~~--~l~V~~~dg~l~i 79 (100)
T PF02911_consen 10 DW-NQSAEEIYNLVRALN-P--YPGAFTTFNGKRIKILKAEPLEDDSSSNPPGTIVYIDKN--GLLVACGDGALRI 79 (100)
T ss_dssp -T-TSBHHHHHHHHHHTT-T--TT-EEEEETTEEEEEEEEEEEETTSSSSSTTBEEEEETT--EEEEETSBSEEEE
T ss_pred CC-CCCHHHHHHHHhCCC-C--CCCEEEeeCCeEEEEEeeeecccccccccCceEEEEcCC--EEEEEECCcEEEE
Confidence 46 778999999999996 4 22333567999999988641 1234443333 4558888655544
No 10
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=58.07 E-value=11 Score=28.98 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=24.0
Q ss_pred eEEEEecCCC-EEEecCCCCCCCHHHHHHHHHhcC
Q 033938 22 SAAIVGHDGS-VWAQSSNFPQFKPEEIAAIMKDFE 55 (108)
Q Consensus 22 ~aaIig~dG~-vwA~s~gf~~~t~~E~~~l~~~f~ 55 (108)
=.-+++.+|. -||.+..- +++|+..|.++.+
T Consensus 219 YvyLVD~~grIRWagsG~A---t~~E~~~L~k~~~ 250 (252)
T PF05176_consen 219 YVYLVDPNGRIRWAGSGPA---TPEELESLWKCVK 250 (252)
T ss_pred eEEEECCCCeEEeCccCCC---CHHHHHHHHHHHh
Confidence 4567788887 59977544 9999999998753
No 11
>PRK00468 hypothetical protein; Provisional
Probab=49.51 E-value=32 Score=21.69 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=25.6
Q ss_pred HHHHHHhc-CCCCCCCccceEEcCEEEEEEEeCCC--CeEEEecCCc
Q 033938 47 IAAIMKDF-EEPGSLAPTGLHLGGTKYMVIQGEPG--AVIRGKKVIY 90 (108)
Q Consensus 47 ~~~l~~~f-~d~~~~~~~Gi~l~G~KY~~lr~d~~--~~iygkkg~~ 90 (108)
+..|++.| ++|+.+.-+-..-+..-.+-++++++ .-++||+|+.
T Consensus 5 v~~iv~~LVd~Pe~v~V~~~~~~~~~~~~l~v~~~D~GrVIGk~Gr~ 51 (75)
T PRK00468 5 VETIAKALVDNPDAVQVNEIEGEQSVILELKVAPEDMGKVIGKQGRI 51 (75)
T ss_pred HHHHHHHhcCCCCeEEEEEEeCCCeEEEEEEEChhhCcceecCCChh
Confidence 45666666 56765554433333444445666643 4699999874
No 12
>PF13734 Inhibitor_I69: Spi protease inhibitor; PDB: 1PVJ_A 1DKI_D 2UZJ_A 2JTC_A 4D8E_A 4D8I_A 4D8B_A.
Probab=49.14 E-value=14 Score=24.46 Aligned_cols=17 Identities=41% Similarity=0.514 Sum_probs=11.5
Q ss_pred CCCCCCCHHHHHHHHHhc
Q 033938 37 SNFPQFKPEEIAAIMKDF 54 (108)
Q Consensus 37 ~gf~~~t~~E~~~l~~~f 54 (108)
.+| +.|++|+..|+..|
T Consensus 3 ~~f-~rt~~eA~~IA~~F 19 (96)
T PF13734_consen 3 ENF-QRTEKEALQIAKTF 19 (96)
T ss_dssp ----B--HHHHHHHHHHH
T ss_pred ccc-ccCHHHHHHHHHHH
Confidence 478 89999999999988
No 13
>PF10144 SMP_2: Bacterial virulence factor haemolysin; InterPro: IPR019305 This entry represents a group of bacterial proteins that are membrane proteins that effect the expression of haemolysin under anaerobic conditions [].
Probab=45.88 E-value=26 Score=26.31 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=22.7
Q ss_pred hcccccCCCccceEEEEecCCCEEEecCC
Q 033938 10 HLMCDIDGHHLTSAAIVGHDGSVWAQSSN 38 (108)
Q Consensus 10 ~Lv~~~~t~~v~~aaIig~dG~vwA~s~g 38 (108)
+|.. ...|-+|+|++.+|..-|.|.+
T Consensus 80 ~L~~---d~~VldAsIYd~~G~lLA~S~~ 105 (210)
T PF10144_consen 80 QLAK---DPFVLDASIYDADGVLLAQSGE 105 (210)
T ss_pred HHhc---CCeEeEEEEECCCCCEEEEcCC
Confidence 5666 7899999999999999998864
No 14
>PRK02821 hypothetical protein; Provisional
Probab=43.18 E-value=37 Score=21.62 Aligned_cols=44 Identities=7% Similarity=0.191 Sum_probs=27.4
Q ss_pred HHHHHHhc-CCCCCCCccceEEcCEEEEEEEeCCC--CeEEEecCCc
Q 033938 47 IAAIMKDF-EEPGSLAPTGLHLGGTKYMVIQGEPG--AVIRGKKVIY 90 (108)
Q Consensus 47 ~~~l~~~f-~d~~~~~~~Gi~l~G~KY~~lr~d~~--~~iygkkg~~ 90 (108)
+..|++.+ ++|+.+.-+-..-.+...+.++++++ .-+.||+|+.
T Consensus 6 v~~ivk~LVd~Pe~V~V~~~~~~~~~~i~l~v~~~D~GrVIGk~Gr~ 52 (77)
T PRK02821 6 VEHLVRGIVDNPDDVRVDSHTNRRGRTLEVRVHPDDLGKVIGRGGRT 52 (77)
T ss_pred HHHHHHHhCCCCCeEEEEEEECCCcEEEEEEEChhhCcceeCCCCch
Confidence 34566666 45665554444445556677777753 4589999874
No 15
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=39.75 E-value=23 Score=20.14 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=15.0
Q ss_pred ccceEEcCEEEEEEEeC
Q 033938 62 PTGLHLGGTKYMVIQGE 78 (108)
Q Consensus 62 ~~Gi~l~G~KY~~lr~d 78 (108)
..|+.|+|+|+++..+.
T Consensus 24 ~~~~~L~G~K~~v~~~~ 40 (52)
T PF02770_consen 24 GDGYVLNGEKRFVSNAP 40 (52)
T ss_dssp TTEEEEEEEEEEEETTT
T ss_pred cceEEEeeEEEEECCcC
Confidence 57899999999999866
No 16
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=37.74 E-value=2e+02 Score=22.48 Aligned_cols=37 Identities=14% Similarity=0.333 Sum_probs=27.7
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeC
Q 033938 38 NFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGE 78 (108)
Q Consensus 38 gf~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d 78 (108)
+| +-+.+|+..++.+|. | ....=..++|+++.+.++.
T Consensus 212 dw-~~~a~~I~~~iRA~~-p--~pga~~~~~g~~i~i~~a~ 248 (313)
T TIGR00460 212 DW-NQSAEELLNKIRALN-P--WPTAWLTFEGKNIKIHKAK 248 (313)
T ss_pred Cc-cCCHHHHHHHHhccC-C--CCceEEEECCEEEEEEEEE
Confidence 46 668899999999996 4 3333457899999998754
No 17
>COG1837 Predicted RNA-binding protein (contains KH domain) [General function prediction only]
Probab=36.77 E-value=73 Score=20.30 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=28.8
Q ss_pred HHHHHHhc-CCCCCCCccceEEcCEEEEEEEeCCC--CeEEEecCCc
Q 033938 47 IAAIMKDF-EEPGSLAPTGLHLGGTKYMVIQGEPG--AVIRGKKVIY 90 (108)
Q Consensus 47 ~~~l~~~f-~d~~~~~~~Gi~l~G~KY~~lr~d~~--~~iygkkg~~ 90 (108)
+..|++.| +.|+.+.-.-.......-+-++.+++ .-+.||+|+.
T Consensus 5 v~~ivk~lVd~Pd~v~V~~~~~~~~~~~~l~v~~~D~GkvIGk~GRt 51 (76)
T COG1837 5 VEFIVKPLVDNPDDVRVDEEEGEKTVTIELRVAPEDMGKVIGKQGRT 51 (76)
T ss_pred HHHHHHHhcCCccceEEEEEecCCeEEEEEEECcccccceecCCChh
Confidence 34566665 56776654444446666677777753 4699999874
No 18
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=35.60 E-value=56 Score=15.73 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=11.8
Q ss_pred eEEEEecCCCEEEecCC
Q 033938 22 SAAIVGHDGSVWAQSSN 38 (108)
Q Consensus 22 ~aaIig~dG~vwA~s~g 38 (108)
.+...+.+|.+|..+.+
T Consensus 8 ~~i~~D~~G~lWigT~~ 24 (24)
T PF07494_consen 8 YSIYEDSDGNLWIGTYN 24 (24)
T ss_dssp EEEEE-TTSCEEEEETS
T ss_pred EEEEEcCCcCEEEEeCC
Confidence 35666789999987743
No 19
>PF01509 TruB_N: TruB family pseudouridylate synthase (N terminal domain); InterPro: IPR002501 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. This entry represents pseudouridine synthase TruB, as well as Cbf5p that modifies rRNA [].; GO: 0006396 RNA processing; PDB: 1SGV_B 2AUS_C 3UAI_A 3U28_A 2RFK_A 3LWV_A 3HJY_A 3HAX_A 3LWO_A 3HAY_A ....
Probab=34.61 E-value=60 Score=22.95 Aligned_cols=44 Identities=11% Similarity=0.256 Sum_probs=28.7
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHHhcCCC---CCCCccceEEcCEEEE
Q 033938 29 DGSVWAQSSNFPQFKPEEIAAIMKDFEEP---GSLAPTGLHLGGTKYM 73 (108)
Q Consensus 29 dG~vwA~s~gf~~~t~~E~~~l~~~f~d~---~~~~~~Gi~l~G~KY~ 73 (108)
+|.+....+-. .++.+++..++..|... ..-.-+.+.++|++-.
T Consensus 60 ~G~v~~~~~~~-~it~e~l~~~l~~f~G~~~Q~pP~ySAvki~G~raY 106 (149)
T PF01509_consen 60 EGEVTETKPYD-HITEEDLEKVLAKFQGEIEQVPPMYSAVKINGKRAY 106 (149)
T ss_dssp TSSEEEE---T-T--HHHHHHHHHHTSEEEEES-SSSSSSECTTCEHH
T ss_pred eeeEEEeeccc-cCCHHHHHHHHHhCcCCEeeeCchheeEcCCCccHH
Confidence 56788876555 88999999999999532 1234578999998754
No 20
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=34.47 E-value=39 Score=22.78 Aligned_cols=71 Identities=20% Similarity=0.448 Sum_probs=40.8
Q ss_pred hhhhhhccccc-CCCccceEEEEecCCC-EEEecCCCCCC-------CHHHHHHHHHhcC---CCCCCCccceEE-cCEE
Q 033938 5 TYVDDHLMCDI-DGHHLTSAAIVGHDGS-VWAQSSNFPQF-------KPEEIAAIMKDFE---EPGSLAPTGLHL-GGTK 71 (108)
Q Consensus 5 ~yvd~~Lv~~~-~t~~v~~aaIig~dG~-vwA~s~gf~~~-------t~~E~~~l~~~f~---d~~~~~~~Gi~l-~G~K 71 (108)
+|+++++-... .+-.++..+|++.+|. +|+.+.++ .. -++++..+++-.. ........|+.. +|.-
T Consensus 34 ~~~~~N~~~~~~~~~~~d~~~~~d~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 112 (161)
T PF05228_consen 34 DWIDENLGPELFENFGLDLIFILDPDGRVLYSSSKGY-DFEPGSFDPIPPSLSQLISDLRALSPSNPSSASGLVRIDGGP 112 (161)
T ss_pred HHHHHhcChhhhhhcCccEEEEEcCCCCEEEEeccCc-ccCccccccccHHHHHHHHHHHhhccccCCceEEEEEECCeE
Confidence 46665443211 3668999999999997 68666665 22 2235555554332 122334456554 6666
Q ss_pred EEEEE
Q 033938 72 YMVIQ 76 (108)
Q Consensus 72 Y~~lr 76 (108)
|++..
T Consensus 113 ~lvaa 117 (161)
T PF05228_consen 113 ALVAA 117 (161)
T ss_pred EEEEE
Confidence 66554
No 21
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=31.81 E-value=58 Score=16.15 Aligned_cols=10 Identities=30% Similarity=0.288 Sum_probs=7.7
Q ss_pred cCCcEEEeeC
Q 033938 98 CIDSITLCDS 107 (108)
Q Consensus 98 ~~~~~~~~~~ 107 (108)
++++|.|+|+
T Consensus 11 ~~g~i~VaD~ 20 (28)
T PF01436_consen 11 SDGNIYVADS 20 (28)
T ss_dssp TTSEEEEEEC
T ss_pred CCCCEEEEEC
Confidence 6778888875
No 22
>PRK01064 hypothetical protein; Provisional
Probab=31.51 E-value=1.1e+02 Score=19.39 Aligned_cols=44 Identities=18% Similarity=0.143 Sum_probs=24.0
Q ss_pred HHHHHHhc-CCCCCCCccceEEcCEEEEEEEeCCC--CeEEEecCCc
Q 033938 47 IAAIMKDF-EEPGSLAPTGLHLGGTKYMVIQGEPG--AVIRGKKVIY 90 (108)
Q Consensus 47 ~~~l~~~f-~d~~~~~~~Gi~l~G~KY~~lr~d~~--~~iygkkg~~ 90 (108)
+..|++.| ++|+.+.-.-..-++.-.+-++.+++ ..++||+|++
T Consensus 5 v~~iv~~LVd~Pe~V~V~~~~~~~~~~~~l~v~~~D~g~vIGk~G~~ 51 (78)
T PRK01064 5 LAYIVKNLVDRPEEVHIKEVQGTHTIIYELTVAKPDIGKIIGKEGRT 51 (78)
T ss_pred HHHHHHHhcCCCCeEEEEEEeCCCEEEEEEEECcccceEEECCCCcc
Confidence 45566666 55765543322223444445555532 5688988864
No 23
>COG4448 AnsA L-asparaginase II [Amino acid transport and metabolism]
Probab=31.51 E-value=24 Score=28.18 Aligned_cols=82 Identities=15% Similarity=0.080 Sum_probs=52.9
Q ss_pred CCccceEEEEecCCC---EEEecC-----CC------CCCCHHHHH---HHHHhcCCCCCCCccceEEcCEEEEEEEeCC
Q 033938 17 GHHLTSAAIVGHDGS---VWAQSS-----NF------PQFKPEEIA---AIMKDFEEPGSLAPTGLHLGGTKYMVIQGEP 79 (108)
Q Consensus 17 t~~v~~aaIig~dG~---vwA~s~-----gf------~~~t~~E~~---~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~ 79 (108)
+|.....-|.+.||+ .+|-.- +| ..+-++-++ .|+.++ ...-+++.|++..+++-.+
T Consensus 181 tga~~~~d~~a~DgCsiPTYa~~L~~lAhgfA~mAtg~glg~eraka~~Rli~Ac------maePf~VAGt~r~dteLM~ 254 (339)
T COG4448 181 TGAPHAEDICAHDGCSIPTYALPLGQLAHGFALMATGNGLGAERAKAAERLIRAC------MAEPFYVAGTGRADTELMQ 254 (339)
T ss_pred hCCcchhhccccCCCCCcceeeehhhHHHHHHHHHhcCCcchHHHHHHHHHHHHH------hcCCeeEcccchhhHHHHH
Confidence 345566667778884 355321 12 023444433 334332 2344899999999887653
Q ss_pred --CCeEEEecCCccEEEEEecCCcEEE
Q 033938 80 --GAVIRGKKVIYFSHNITFCIDSITL 104 (108)
Q Consensus 80 --~~~iygkkg~~G~~~i~~~~~~~~~ 104 (108)
+.-|+.|-|.+|++++--|+.-+=|
T Consensus 255 ~apG~ifaKtGAEGV~c~~~p~~G~g~ 281 (339)
T COG4448 255 QAPGRIFAKTGAEGVFCAARPEEGLGL 281 (339)
T ss_pred hCCCceEeccCccceEEecccCCceeE
Confidence 6889999999999999888765533
No 24
>PF12527 DUF3727: Protein of unknown function (DUF3727) ; InterPro: IPR022203 This domain family is found in bacteria and eukaryotes, and is approximately 100 amino acids in length.
Probab=31.25 E-value=1.5e+02 Score=19.96 Aligned_cols=64 Identities=9% Similarity=0.068 Sum_probs=40.9
Q ss_pred EEEecCCCCCCCHHHHHHHHHhcC----CCCCCC-ccceEEcCEEEEEEEeCCCCeEEEecCC-ccEEEE
Q 033938 32 VWAQSSNFPQFKPEEIAAIMKDFE----EPGSLA-PTGLHLGGTKYMVIQGEPGAVIRGKKVI-YFSHNI 95 (108)
Q Consensus 32 vwA~s~gf~~~t~~E~~~l~~~f~----d~~~~~-~~Gi~l~G~KY~~lr~d~~~~iygkkg~-~G~~~i 95 (108)
....+..++.+.++|+-.+-.-=+ +...+. -..|+..+++|.+..--++-.+.+|+.. ++..+|
T Consensus 11 tlTv~Gel~~~~eedi~~~~~~~d~~~~~~E~~e~L~sF~~e~~eY~iYtPLdP~l~va~~~~~g~~~ll 80 (100)
T PF12527_consen 11 TLTVRGELPEPEEEDILELEEEDDDDEEESEEVELLASFYHEDQEYGIYTPLDPLLFVARKDDEGGPELL 80 (100)
T ss_pred EEEEeccCCCCChHHhhhhcccCCCCCCCchheeeeeeEeeCCeEEEEEecCCceEEEEEEcCCCCeEEe
Confidence 344456675578887766533211 111222 2349999999998876536667799988 777776
No 25
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=29.05 E-value=3.7e+02 Score=23.04 Aligned_cols=60 Identities=8% Similarity=0.128 Sum_probs=38.3
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCC--------CCeEEEecCCccEEEEEecCCcEEE
Q 033938 38 NFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEP--------GAVIRGKKVIYFSHNITFCIDSITL 104 (108)
Q Consensus 38 gf~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~--------~~~iygkkg~~G~~~i~~~~~~~~~ 104 (108)
+| +-+.+|+..++.+|.+|- ...=.+++|+++.++++.. +..|.... + +.|+|..+.|.|
T Consensus 209 dw-~~~a~~i~~~iRa~~~p~--pga~~~~~g~~~~i~~a~~~~~~~~~~pG~i~~~~---~-~~v~~~dg~l~i 276 (660)
T PRK08125 209 DW-HKPASTLHNLVRAVTDPW--PGAFSYVGEQKFTVWSSRVLPDASGAQPGTVLSVA---P-LRIACGEGALEI 276 (660)
T ss_pred CC-CCCHHHHHHHHhhcCCCC--CceEEEECCEEEEEEEEEEccCCCCCCCCEEEEeC---C-EEEEeCCcEEEE
Confidence 47 668899999999997552 1222468999999988641 12232221 2 677777666555
No 26
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=28.85 E-value=1.8e+02 Score=19.39 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHhcCCC-CCCCccceEEcCEEEEEEEeCCCCe-EEEecCCccEEEEEecCCcEEE
Q 033938 38 NFPQFKPEEIAAIMKDFEEP-GSLAPTGLHLGGTKYMVIQGEPGAV-IRGKKVIYFSHNITFCIDSITL 104 (108)
Q Consensus 38 gf~~~t~~E~~~l~~~f~d~-~~~~~~Gi~l~G~KY~~lr~d~~~~-iygkkg~~G~~~i~~~~~~~~~ 104 (108)
|- ++++++++.|-.+++.- .+.....+.|-+.-=+++... .++ |.+..+..---.|=|-+|+.||
T Consensus 29 ~I-~l~~~~~~~i~~av~~A~~KG~kesLvl~~d~AlVvsv~-NrTVITAmd~~~~k~nVFTNIDsaVi 95 (96)
T TIGR02530 29 NI-SINPDDWKKLLEAVEEAESKGVKDSLILMNDAALVVSLK-NRTVITAMDKDELKNNVFTNIDGTVI 95 (96)
T ss_pred CC-CCCHHHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEcC-CCeEEEEeCchhhcCCcEecccceEe
Confidence 55 78999999999988432 223346677777777777777 555 5566655555577899999887
No 27
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=28.51 E-value=53 Score=21.50 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHhcC--CCCCCCccceEEcCEE
Q 033938 41 QFKPEEIAAIMKDFE--EPGSLAPTGLHLGGTK 71 (108)
Q Consensus 41 ~~t~~E~~~l~~~f~--d~~~~~~~Gi~l~G~K 71 (108)
.++++|+..+.+... -|.....+||++.|-=
T Consensus 3 pL~~~el~~ik~~v~~~~~~gv~~~GiT~~GFl 35 (89)
T PF08356_consen 3 PLQPQELEDIKKVVRENIPDGVNDNGITLDGFL 35 (89)
T ss_pred CCCHHHHHHHHHHHHHHCCCCcCCCccchhhHH
Confidence 578999988887763 2455667899888743
No 28
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=27.80 E-value=2e+02 Score=19.49 Aligned_cols=64 Identities=19% Similarity=0.259 Sum_probs=39.4
Q ss_pred hhhhcccccCCCccceEEEEecCCCEEEecCCCCCCCHHHHHHHHH---------------hc---CCCCCCCccceEEc
Q 033938 7 VDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMK---------------DF---EEPGSLAPTGLHLG 68 (108)
Q Consensus 7 vd~~Lv~~~~t~~v~~aaIig~dG~vwA~s~gf~~~t~~E~~~l~~---------------~f---~d~~~~~~~Gi~l~ 68 (108)
+| .|+. -..+-.|.+++.||.+-+--... + +|.+.++. ++ .-..-.+.+|.-+.
T Consensus 5 Ld-eLlq---i~Gv~AAGefs~DGkLv~Ykgdm---~-k~~A~maAkmcaAnnmM~~~qA~~~t~~sg~~w~P~~gwa~a 76 (109)
T COG4831 5 LD-ELLQ---IKGVMAAGEFSPDGKLVEYKGDM---P-KEMAEMAAKMCAANNMMGDMQASGYTALSGMNWTPQNGWAVA 76 (109)
T ss_pred HH-HHhC---ccceeEeceeCCCCceEEeeCCC---C-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCccccccceEEe
Confidence 45 5666 55677899999999877755444 2 33332222 11 11124567899999
Q ss_pred CEEEEEEEeC
Q 033938 69 GTKYMVIQGE 78 (108)
Q Consensus 69 G~KY~~lr~d 78 (108)
|-||.+--.-
T Consensus 77 gg~yavci~G 86 (109)
T COG4831 77 GGKYAVCIMG 86 (109)
T ss_pred cCceEEEEec
Confidence 9999865443
No 29
>cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1. Snurportin-1 (SPN1 or SNUPN) is a nuclear import adaptor for m3G-capped spliceosomal U small nucleoproteins (snRNPs), which are assembled in the cytoplasm. After capping and assembly, the U snRNPs are transported into the nucleus by SPN1 and importin beta; SPN1 is then returned to the cytoplasm by exportin 1 (CRM1), which also transports the non-capped U snRNPs. The U snRNPs are essential elements of the spliceosome, which catalyzes the excision of introns and the ligation of exons to form a mature mRNA. SPN1 contains two domains, an N-terminal importin beta-binding (IBB) domain and a C-terminal m3G cap-binding domain.
Probab=27.69 E-value=79 Score=23.18 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=19.8
Q ss_pred cCEEEEEEEeCCCCeEEEecCCc-cEEEEEecCC
Q 033938 68 GGTKYMVIQGEPGAVIRGKKVIY-FSHNITFCID 100 (108)
Q Consensus 68 ~G~KY~~lr~d~~~~iygkkg~~-G~~~i~~~~~ 100 (108)
-|++|+++-......+|-|.|.. -.+....|++
T Consensus 30 ~G~R~lvv~~~g~t~~~~r~g~~~~~f~s~lP~g 63 (186)
T cd09232 30 VGKRCLVVASKGKTVARSKNGRTLHRFSSALPGG 63 (186)
T ss_pred CceEEEEEEeCCEEEEEeCCCCEEEecccCCCCC
Confidence 58999999987333455565444 3334445553
No 30
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=26.36 E-value=37 Score=23.06 Aligned_cols=19 Identities=21% Similarity=0.043 Sum_probs=15.1
Q ss_pred eEEEecCCccEEEEEecCC
Q 033938 82 VIRGKKVIYFSHNITFCID 100 (108)
Q Consensus 82 ~iygkkg~~G~~~i~~~~~ 100 (108)
.+|+++|..|+.+|+|..+
T Consensus 48 ~l~~~~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 48 PLYGKQGHTGFAIVEFNKD 66 (116)
T ss_dssp EEEETTEEEEEEEEE--SS
T ss_pred ECcCCCCCcEEEEEEECCC
Confidence 6889999999999999874
No 31
>COG2451 Ribosomal protein L35AE/L33A [Translation, ribosomal structure and biogenesis]
Probab=26.30 E-value=1.1e+02 Score=20.60 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=21.3
Q ss_pred ceEEcCEEEEEEEeCCCCeEEEe----cCCccEEEEEecC
Q 033938 64 GLHLGGTKYMVIQGEPGAVIRGK----KVIYFSHNITFCI 99 (108)
Q Consensus 64 Gi~l~G~KY~~lr~d~~~~iygk----kg~~G~~~i~~~~ 99 (108)
+++|++.-+..-+.. ++.+.|| .|++|++-.+|-.
T Consensus 42 ~~y~gk~v~yk~~~~-G~Vi~G~V~R~HGnsGaVrarF~~ 80 (100)
T COG2451 42 QFYLGKRVCYKYRSS-GRVIKGKVVRTHGNSGAVRARFER 80 (100)
T ss_pred HhhhccEEEEEeCCC-CcEEEEEEEEecCCcceEEEEecC
Confidence 344455445555554 4555553 6888988888754
No 32
>COG3726 AhpA Uncharacterized membrane protein affecting hemolysin expression [General function prediction only]
Probab=25.71 E-value=32 Score=26.06 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=46.0
Q ss_pred hhhhhcccccCCCccceEEEEecCCCEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCCCCeEEE
Q 033938 6 YVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRG 85 (108)
Q Consensus 6 yvd~~Lv~~~~t~~v~~aaIig~dG~vwA~s~gf~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~~~iyg 85 (108)
.+| +|.. ...|-+|+|++.||.+.|.+..+.++.+ .. +++.| ..|.++| +.- . +-|++
T Consensus 77 lln-ql~k---~~~VldAsIY~~~g~LlA~ag~~~~vR~--~l----~Ldg~----~~g~y~n-qQi----V---EPI~~ 134 (214)
T COG3726 77 LLN-QLTK---ESLVLDASIYDEDGDLLARAGSSVNVRD--RL----ALDGK----TAGLYFN-QQI----V---EPIAG 134 (214)
T ss_pred HHH-HHhh---cceeeeceeecccchhHHhcccccchhh--hh----hcCCC----CCccccc-cee----e---ccccc
Confidence 344 5665 6688899999999999998876633322 11 12222 3455555 111 1 35888
Q ss_pred ecCCccEEEEEecC
Q 033938 86 KKVIYFSHNITFCI 99 (108)
Q Consensus 86 kkg~~G~~~i~~~~ 99 (108)
+.|..|+.-|++.-
T Consensus 135 ~~gi~GfLRiTlDt 148 (214)
T COG3726 135 KNGILGFLRITLDT 148 (214)
T ss_pred CCCcceeEEEEEec
Confidence 88889988887754
No 33
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=25.23 E-value=51 Score=21.40 Aligned_cols=18 Identities=28% Similarity=0.632 Sum_probs=15.6
Q ss_pred CccceEEcCEEEEEEEeC
Q 033938 61 APTGLHLGGTKYMVIQGE 78 (108)
Q Consensus 61 ~~~Gi~l~G~KY~~lr~d 78 (108)
...=+.++|++|+++|.+
T Consensus 70 ~g~~v~~~~~~y~i~~~~ 87 (93)
T cd00320 70 AGTEVKLDGEEYLILRES 87 (93)
T ss_pred CceEEEECCEEEEEEEHH
Confidence 356799999999999988
No 34
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=24.50 E-value=3.4e+02 Score=21.04 Aligned_cols=61 Identities=13% Similarity=0.207 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCC--------CCeEEEecCCccEEEEEecCCcEEE
Q 033938 38 NFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEP--------GAVIRGKKVIYFSHNITFCIDSITL 104 (108)
Q Consensus 38 gf~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~--------~~~iygkkg~~G~~~i~~~~~~~~~ 104 (108)
+| +-+.+|+..++.+|. | ....=.+++|+++.+.++.. +..|.... +. .++|+|.++.|.|
T Consensus 212 dw-~~~a~~I~~~iRA~~-p--~pga~~~~~g~~v~i~~a~~~~~~~~~~pG~i~~~~-~~-~~~V~~~dg~l~i 280 (309)
T PRK00005 212 DW-SKPAAELENHIRGFN-P--WPGAWTELDGQRLKILEAELVEASGSGAPGTILAID-KD-GIVVATGEGALRL 280 (309)
T ss_pred cC-CCCHHHHHHHHhcCC-C--CCceEEEECCEEEEEEEEEEccCCCCCCCCEEEEec-CC-eEEEEECCeeEEE
Confidence 46 557889999999994 3 22223468999999987641 12233222 22 4557777665554
No 35
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=24.23 E-value=87 Score=18.93 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHhcCCCC
Q 033938 41 QFKPEEIAAIMKDFEEPG 58 (108)
Q Consensus 41 ~~t~~E~~~l~~~f~d~~ 58 (108)
.+++.|.++|+.+|++..
T Consensus 28 Gv~~~e~~aIi~~F~~~~ 45 (57)
T PF05952_consen 28 GVDKDEQKAIIDAFKDEE 45 (57)
T ss_pred cCCHHHHHHHHHHHcccc
Confidence 458999999999998764
No 36
>KOG3535 consensus Adaptor protein Disabled [Signal transduction mechanisms]
Probab=24.02 E-value=66 Score=27.30 Aligned_cols=19 Identities=11% Similarity=-0.109 Sum_probs=17.0
Q ss_pred CeEEEecCCccEEEEEecC
Q 033938 81 AVIRGKKVIYFSHNITFCI 99 (108)
Q Consensus 81 ~~iygkkg~~G~~~i~~~~ 99 (108)
..+||+.|+--+++|||++
T Consensus 136 GyVcG~eG~hkF~aIKTaQ 154 (557)
T KOG3535|consen 136 GYVCGEEGKHKFYAIKTAQ 154 (557)
T ss_pred eeeecCCCceeEEEEeccc
Confidence 3688999999999999987
No 37
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=23.94 E-value=59 Score=21.21 Aligned_cols=17 Identities=18% Similarity=0.599 Sum_probs=15.0
Q ss_pred ccceEEcCEEEEEEEeC
Q 033938 62 PTGLHLGGTKYMVIQGE 78 (108)
Q Consensus 62 ~~Gi~l~G~KY~~lr~d 78 (108)
..-+.++|++|+++|.+
T Consensus 72 g~ev~~~~~~y~iv~~~ 88 (95)
T PRK00364 72 GTEVKIDGEEYLILRES 88 (95)
T ss_pred CeEEEECCEEEEEEEHH
Confidence 45689999999999988
No 38
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=23.82 E-value=2.3e+02 Score=20.11 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=21.9
Q ss_pred CCCccceEEEEecCCCEEEe--cCCCCCCCHHHHHHHHH
Q 033938 16 DGHHLTSAAIVGHDGSVWAQ--SSNFPQFKPEEIAAIMK 52 (108)
Q Consensus 16 ~t~~v~~aaIig~dG~vwA~--s~gf~~~t~~E~~~l~~ 52 (108)
|.|....-||++++|++... +-++ +..|+-.++.
T Consensus 38 DPG~ttgiAildL~G~~l~l~S~R~~---~~~evi~~I~ 73 (138)
T PF04312_consen 38 DPGTTTGIAILDLDGELLDLKSSRNM---SRSEVIEWIS 73 (138)
T ss_pred CCCceeEEEEEecCCcEEEEEeecCC---CHHHHHHHHH
Confidence 46778899999999986443 3344 4444444443
No 39
>PRK11246 hypothetical protein; Provisional
Probab=23.47 E-value=1.1e+02 Score=23.43 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.0
Q ss_pred hcccccCCCccceEEEEecCCCEEEecCCC
Q 033938 10 HLMCDIDGHHLTSAAIVGHDGSVWAQSSNF 39 (108)
Q Consensus 10 ~Lv~~~~t~~v~~aaIig~dG~vwA~s~gf 39 (108)
+|.. ...|-.|.|++.||..-|.|.+.
T Consensus 80 ~La~---d~~VlDAsIY~~~G~llA~S~~~ 106 (218)
T PRK11246 80 QLTD---ESRILDASVYDEQGDLIARSGES 106 (218)
T ss_pred HHhc---CCceeeEEEECCCCCEEEecCCC
Confidence 5666 77999999999999999988654
No 40
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=22.98 E-value=1.2e+02 Score=19.43 Aligned_cols=17 Identities=24% Similarity=0.677 Sum_probs=15.2
Q ss_pred ccceEEcCEEEEEEEeC
Q 033938 62 PTGLHLGGTKYMVIQGE 78 (108)
Q Consensus 62 ~~Gi~l~G~KY~~lr~d 78 (108)
..-+.++|++|+++|.+
T Consensus 71 g~~v~~~~~~~~~~~~~ 87 (93)
T PF00166_consen 71 GTEVKFDGEKYLIVRED 87 (93)
T ss_dssp SEEEEETTEEEEEEEGG
T ss_pred ceEEEECCEEEEEEEHH
Confidence 56789999999999988
No 41
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=22.77 E-value=71 Score=21.37 Aligned_cols=19 Identities=5% Similarity=0.427 Sum_probs=15.9
Q ss_pred CCccceEEcCEEEEEEEeC
Q 033938 60 LAPTGLHLGGTKYMVIQGE 78 (108)
Q Consensus 60 ~~~~Gi~l~G~KY~~lr~d 78 (108)
...+-+.++|++|+++|.+
T Consensus 74 y~Gtevk~dg~ey~i~~e~ 92 (100)
T PTZ00414 74 FGGSSVKVEGEEFFLYNED 92 (100)
T ss_pred CCCcEEEECCEEEEEEEhH
Confidence 3356699999999999988
No 42
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=22.35 E-value=59 Score=23.65 Aligned_cols=33 Identities=24% Similarity=0.205 Sum_probs=24.6
Q ss_pred CccceEEcCEEEEEEEeCCCCeEEEecCCccEEEEE
Q 033938 61 APTGLHLGGTKYMVIQGEPGAVIRGKKVIYFSHNIT 96 (108)
Q Consensus 61 ~~~Gi~l~G~KY~~lr~d~~~~iygkkg~~G~~~i~ 96 (108)
...|+++|.++-...... ..-|||++ .|+|+|.
T Consensus 2 l~ag~h~G~~~~~wnp~m-~~yiyg~r--~~~~Iid 34 (193)
T cd01425 2 LEAGVHLGHKTRRWNPKM-KPYIYGER--NGIHIID 34 (193)
T ss_pred CccceEeCCCcCCCCccc-hhheeccc--CCeEEEe
Confidence 357888888776655555 57899988 7888875
No 43
>PF13856 Gifsy-2: ATP-binding sugar transporter from pro-phage; PDB: 2PP6_A.
Probab=22.01 E-value=1.1e+02 Score=19.62 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=15.8
Q ss_pred CCccceEEcCEEEEEEEeCC
Q 033938 60 LAPTGLHLGGTKYMVIQGEP 79 (108)
Q Consensus 60 ~~~~Gi~l~G~KY~~lr~d~ 79 (108)
.+..-+.++|++|.+.+...
T Consensus 67 ~~gd~v~~dG~~y~V~~~~~ 86 (95)
T PF13856_consen 67 RRGDRVVIDGESYTVTRFQE 86 (95)
T ss_dssp -TT-EEEETTEEEEEEEEEE
T ss_pred CCCCEEEECCeEEEEeEEec
Confidence 55678999999999999873
No 44
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=21.96 E-value=1.5e+02 Score=18.57 Aligned_cols=24 Identities=4% Similarity=-0.168 Sum_probs=19.8
Q ss_pred CeEEEecCCccEEEEEecCCcEEEe
Q 033938 81 AVIRGKKVIYFSHNITFCIDSITLC 105 (108)
Q Consensus 81 ~~iygkkg~~G~~~i~~~~~~~~~~ 105 (108)
-.+|+.+ ..-+++|+|.+..++|.
T Consensus 62 ~~~y~t~-~~~~i~I~t~~~~y~is 85 (100)
T PF10882_consen 62 VRLYATR-NKNVILIKTKDKTYVIS 85 (100)
T ss_pred EEEEEEC-CCCEEEEEECCceEEEc
Confidence 3477888 88899999999888874
No 45
>COG4443 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.82 E-value=71 Score=20.12 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=15.0
Q ss_pred CCCCCCHHHHHHHHHhcCC
Q 033938 38 NFPQFKPEEIAAIMKDFEE 56 (108)
Q Consensus 38 gf~~~t~~E~~~l~~~f~d 56 (108)
|. .+|.+|+++|.++|+.
T Consensus 54 Gi-TLt~eE~~~l~d~l~~ 71 (72)
T COG4443 54 GI-TLTNEEFKALKDLLNS 71 (72)
T ss_pred ce-eecHHHHHHHHHHHhc
Confidence 45 7899999999998864
No 46
>KOG2500 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.71 E-value=1.4e+02 Score=23.26 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=20.8
Q ss_pred HHHHhcCCCCCCCccceEEcCEEEEEEEeCCC
Q 033938 49 AIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPG 80 (108)
Q Consensus 49 ~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~ 80 (108)
.++++|-|+....+-=-.+.--+||++|.+++
T Consensus 67 LfA~c~id~~~~~avEav~DSSRYFViRv~dg 98 (253)
T KOG2500|consen 67 LFAQCPIDEGPGNAVEAVSDSSRYFVIRVEDG 98 (253)
T ss_pred hhhhCcccCCCCccceeecccceEEEEEEeCC
Confidence 45566655543333344567789999999964
No 47
>PF09176 Mpt_N: Methylene-tetrahydromethanopterin dehydrogenase, N-terminal; InterPro: IPR015259 Prokaryotic methylene-tetrahydromethanopterin dehydrogenase catalyses the dehydrogenation of methylene-tetrahydromethanopterin during growth on one-carbon compounds such as methanol. It can also catalyse the reversible dehydrogenation of methylene-tetrahydrofolate, though at much lower efficiency []. The pterin domain of this protein is composed of two alpha-beta segments found at the N- and C-terminal ends of the polypeptide respectivly. This entry represents the N-terminal segment of the pterin domain, with a core comprising three alpha/beta/alpha layers in which each sheet contains four strands. ; PDB: 1LUA_A 1LU9_C.
Probab=21.56 E-value=27 Score=22.66 Aligned_cols=31 Identities=29% Similarity=0.699 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHh--c-CCCCCCCccceEEcCEE
Q 033938 41 QFKPEEIAAIMKD--F-EEPGSLAPTGLHLGGTK 71 (108)
Q Consensus 41 ~~t~~E~~~l~~~--f-~d~~~~~~~Gi~l~G~K 71 (108)
+++++|+..|+.. | +.|+....+||-+||+.
T Consensus 20 ~V~~~~V~~LvqdaIFsR~P~~~~~TaiFIGG~d 53 (81)
T PF09176_consen 20 GVTPDEVRGLVQDAIFSRGPKDLKRTAIFIGGRD 53 (81)
T ss_dssp S--TTTHHHHHHHHHSSS-GGGGGGEEEEEE-S-
T ss_pred CcCHHHhhhhhcceeEccCCcCCceeEEEECCcc
Confidence 6799999999863 5 56777888999999964
No 48
>PRK11649 putative peptidase; Provisional
Probab=21.46 E-value=1e+02 Score=25.65 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=20.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHHhcCCC
Q 033938 29 DGSVWAQSSNFPQFKPEEIAAIMKDFEEP 57 (108)
Q Consensus 29 dG~vwA~s~gf~~~t~~E~~~l~~~f~d~ 57 (108)
+++.|++...- .+++.++..|+++|...
T Consensus 192 ~~Sl~~sa~~a-gl~~~~i~~~~~~~~~~ 219 (439)
T PRK11649 192 GGSFVASAKNA-GLTSAEISAVIKALQWQ 219 (439)
T ss_pred eccHHHHHHHc-CCCHHHHHHHHHHhccC
Confidence 55555554444 67999999999998753
No 49
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=21.30 E-value=37 Score=27.27 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=25.0
Q ss_pred CCccceEEcCEEEEEEEeCCCCeEEEecCCccEEEEE
Q 033938 60 LAPTGLHLGGTKYMVIQGEPGAVIRGKKVIYFSHNIT 96 (108)
Q Consensus 60 ~~~~Gi~l~G~KY~~lr~d~~~~iygkkg~~G~~~i~ 96 (108)
+...|++||-+.-....-. ...|||.+. |+|+|.
T Consensus 4 Ll~agvH~Gh~~~~wnpkM-~~yIyg~R~--gihIID 37 (326)
T PRK12311 4 LLEAGVHFGHQSHRWNPKM-APYIFGTRN--NIHIID 37 (326)
T ss_pred HHhCCeecccCCCCCCCcc-cCceecccC--CcEEEc
Confidence 4567999998665544445 578999875 899985
No 50
>PHA02310 hypothetical protein
Probab=20.73 E-value=1.9e+02 Score=20.36 Aligned_cols=37 Identities=5% Similarity=-0.095 Sum_probs=30.3
Q ss_pred CCccceEEcCEEEEEEEeCCCCeEEEecCCccEEEEEecC
Q 033938 60 LAPTGLHLGGTKYMVIQGEPGAVIRGKKVIYFSHNITFCI 99 (108)
Q Consensus 60 ~~~~Gi~l~G~KY~~lr~d~~~~iygkkg~~G~~~i~~~~ 99 (108)
..+.=|.++|++|-+.... ..|+..|=..+.+|+-+.
T Consensus 86 ~agD~lvwnGkry~v~g~~---dW~~QDGW~~~lcve~G~ 122 (130)
T PHA02310 86 MAGDQFIWTGRVFQLESQG---SWFYQDGWGVCLAVDIGA 122 (130)
T ss_pred CCCCEEEEcCcEEEEcccc---ceeecCCceEEEEEEecc
Confidence 4467799999999988765 689999999999888663
No 51
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=20.62 E-value=82 Score=20.57 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=15.5
Q ss_pred CccceEEcCEEEEEEEeC
Q 033938 61 APTGLHLGGTKYMVIQGE 78 (108)
Q Consensus 61 ~~~Gi~l~G~KY~~lr~d 78 (108)
..+=+.++|++|+++|.+
T Consensus 66 ~g~ev~~~~~~y~iv~e~ 83 (91)
T PRK14533 66 AGTEIKIDDEDYIIIDVN 83 (91)
T ss_pred CCeEEEECCEEEEEEEhH
Confidence 356699999999999987
No 52
>PF15409 PH_8: Pleckstrin homology domain
Probab=20.51 E-value=1.6e+02 Score=19.16 Aligned_cols=22 Identities=18% Similarity=0.162 Sum_probs=14.7
Q ss_pred EEEEEEEeCCCCeEEEecCCcc
Q 033938 70 TKYMVIQGEPGAVIRGKKVIYF 91 (108)
Q Consensus 70 ~KY~~lr~d~~~~iygkkg~~G 91 (108)
++|+++..+.+-.-|.+...++
T Consensus 16 kRyFvL~~~~G~LsYy~~~~~~ 37 (89)
T PF15409_consen 16 KRYFVLDFEKGTLSYYRNQNSG 37 (89)
T ss_pred eEEEEEEcCCcEEEEEecCCCC
Confidence 7899997664555666655543
No 53
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=20.09 E-value=65 Score=17.98 Aligned_cols=28 Identities=21% Similarity=0.469 Sum_probs=16.0
Q ss_pred CCEEEecCCCCCCCHHHHHHHHHhcCCC
Q 033938 30 GSVWAQSSNFPQFKPEEIAAIMKDFEEP 57 (108)
Q Consensus 30 G~vwA~s~gf~~~t~~E~~~l~~~f~d~ 57 (108)
...|-+..+|...+.+.++.|.....++
T Consensus 13 ~~tWkAG~NF~~~~~~~ik~LlGv~~~~ 40 (41)
T PF08127_consen 13 NTTWKAGRNFENTSIEYIKRLLGVLPDP 40 (41)
T ss_dssp T-SEEE----SSB-HHHHHHCS-B-TTS
T ss_pred CCcccCCCCCCCCCHHHHHHHcCCCCCC
Confidence 5679988889888999999988876553
No 54
>PRK06988 putative formyltransferase; Provisional
Probab=20.05 E-value=2.4e+02 Score=22.08 Aligned_cols=38 Identities=16% Similarity=0.412 Sum_probs=28.2
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeC
Q 033938 38 NFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGE 78 (108)
Q Consensus 38 gf~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d 78 (108)
+| +-+.+|+..++.+|.+| ....=.+++|+|+.+.++.
T Consensus 211 dw-~~~a~~I~~~iRA~~~p--~pga~~~~~g~~v~i~~a~ 248 (312)
T PRK06988 211 DW-SKPAAQVYNLIRAVAPP--YPGAFTDLGGTRFVVARAR 248 (312)
T ss_pred CC-CCCHHHHHHHhccCCCC--CCeeEEEECCEEEEEEEEE
Confidence 46 56789999999999644 2222347899999999866
Done!