Query 033938
Match_columns 108
No_of_seqs 102 out of 397
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 13:20:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d9y_A Profilin; yeast, actin- 100.0 1.1E-38 3.9E-43 220.5 11.0 99 1-105 1-100 (127)
2 3nul_A Profilin I; cytoskeleto 100.0 1.8E-36 6.3E-41 210.3 13.2 102 2-105 1-103 (130)
3 1acf_A Profilin I; protein bin 100.0 2.6E-36 8.8E-41 208.2 10.3 98 2-105 1-98 (125)
4 1ypr_A Profilin; actin-binding 100.0 3E-36 1E-40 208.1 10.6 97 2-105 1-98 (125)
5 2jkg_A Profilin; proline-rich 100.0 1.1E-35 3.8E-40 215.9 6.6 100 1-105 5-142 (179)
6 2v8f_A Profilin-2, profilin II 100.0 4.3E-34 1.5E-38 200.9 10.2 98 1-105 1-113 (140)
7 3nec_A Profilin, inflammatory 100.0 1.3E-34 4.5E-39 208.7 6.9 100 1-105 4-137 (166)
8 2pbd_P Profilin-1, profilin I; 100.0 4.2E-31 1.4E-35 185.3 10.4 96 3-105 3-112 (139)
9 3leq_A Uncharacterized protein 89.2 1.5 5E-05 29.1 6.6 83 10-95 11-94 (126)
10 1j3w_A Giding PROTEIN-MGLB; gl 78.9 1.5 5.1E-05 30.5 3.0 77 10-92 22-103 (163)
11 1vet_B P14, late endosomal/lys 52.2 14 0.00048 24.2 3.4 64 17-84 16-82 (125)
12 3kye_A Roadblock/LC7 domain, R 42.3 4.5 0.00016 27.9 -0.3 36 17-53 38-73 (150)
13 2bln_A Protein YFBG; transfera 40.8 1.1E+02 0.0037 22.7 8.8 60 38-104 209-276 (305)
14 3u5c_A 40S ribosomal protein S 33.1 29 0.00098 25.9 2.7 40 41-96 8-49 (252)
15 2k49_A UPF0339 protein SO_3888 29.4 1.2E+02 0.0041 19.8 6.2 57 28-87 22-81 (118)
16 1zgh_A Methionyl-tRNA formyltr 28.0 1.8E+02 0.0061 21.3 6.4 38 38-78 203-241 (260)
17 1p3h_A 10 kDa chaperonin; beta 27.2 35 0.0012 21.8 2.1 17 62-78 75-91 (99)
18 3nx6_A 10KDA chaperonin; bacte 26.9 36 0.0012 21.6 2.1 17 62-78 72-88 (95)
19 1pcq_O Groes protein; chaperon 26.7 37 0.0012 21.6 2.1 17 62-78 73-89 (97)
20 2vqe_B 30S ribosomal protein S 26.5 11 0.00036 28.2 -0.6 36 58-96 8-43 (256)
21 2d0s_A Cytochrome C, cytochrom 26.3 62 0.0021 18.1 3.0 20 37-56 58-77 (79)
22 1z7e_A Protein aRNA; rossmann 25.9 2.6E+02 0.0088 22.4 8.4 60 38-104 209-276 (660)
23 2lqc_B Voltage-dependent L-typ 27.6 19 0.00065 17.6 0.0 8 1-8 6-13 (26)
24 1v74_A Colicin D; colicin D - 22.0 24 0.00082 23.1 0.5 22 21-46 74-95 (107)
25 1we3_O CPN10(groes); chaperoni 21.4 34 0.0012 21.9 1.1 17 62-78 77-93 (100)
No 1
>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} SCOP: d.110.1.0 PDB: 3dav_A
Probab=100.00 E-value=1.1e-38 Score=220.49 Aligned_cols=99 Identities=38% Similarity=0.625 Sum_probs=94.9
Q ss_pred CchhhhhhhhcccccCCCccceEEEEecCC-CEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCC
Q 033938 1 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDG-SVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEP 79 (108)
Q Consensus 1 MSWq~yvd~~Lv~~~~t~~v~~aaIig~dG-~vwA~s~gf~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~ 79 (108)
||||+|||++|++ ++++++|||+|+|| ++||+|++| +++|+|++.|+++|+||+.++++||+|+|+||+++|+|
T Consensus 1 MSWq~Yvd~~L~~---~~~~~~aAI~g~dG~svwA~s~gf-~~~p~E~~~i~~~f~d~~~~~~~Gl~l~G~Ky~vir~d- 75 (127)
T 3d9y_A 1 MSWQAYVDTSLLG---TGKIDRAAIVSRAGDSVWAASAGF-NLSPQEIQGLAAGFQDPPSMFGTGIILAGQKYITIRAE- 75 (127)
T ss_dssp -CHHHHHHTTTGG---GSSCCEEEEEETTSSCEEEECTTC-CCCHHHHHHHHHHHHSTTHHHHHCEEETTEEEEEEEEC-
T ss_pred CCHHHHHHHhhcc---cCceeeEEEEeCCCCeEEEeCCCC-ccCHHHHHHHHHHhcCcchhhcCCEEEcCeEEEEEEeC-
Confidence 9999999999999 99999999999999 799999999 99999999999999999988999999999999999999
Q ss_pred CCeEEEecCCccEEEEEecCCcEEEe
Q 033938 80 GAVIRGKKVIYFSHNITFCIDSITLC 105 (108)
Q Consensus 80 ~~~iygkkg~~G~~~i~~~~~~~~~~ 105 (108)
+++||+||+++|++++||.+ .|||+
T Consensus 76 ~~~i~~kkg~~Gv~i~kT~~-aivi~ 100 (127)
T 3d9y_A 76 GRSIYGKLQKEGIICVATKL-CILVS 100 (127)
T ss_dssp SSEEEEEETTEEEEEEECSS-EEEEE
T ss_pred cceEEEEcCCceEEEEECCC-EEEEE
Confidence 89999999999999999997 88876
No 2
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=100.00 E-value=1.8e-36 Score=210.35 Aligned_cols=102 Identities=66% Similarity=1.015 Sum_probs=95.4
Q ss_pred chhhhhhhhcccccCCC-ccceEEEEecCCCEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCCC
Q 033938 2 SWQTYVDDHLMCDIDGH-HLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPG 80 (108)
Q Consensus 2 SWq~yvd~~Lv~~~~t~-~v~~aaIig~dG~vwA~s~gf~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~ 80 (108)
|||+|||++|+++. ++ ++++|||+|+||++||+|++|++++|+|++.|+++|+||+.++++||+|+|+||+++|+|++
T Consensus 1 SWq~YVd~~L~~~~-~g~~~~~aAIig~dGsvWA~s~gf~~~~p~E~~~i~~~f~d~~~~~~~Gl~l~G~Ky~~ir~d~~ 79 (130)
T 3nul_A 1 SWQSYVDDHLMCDV-EGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFLAPTGLFLGGEKYMVIQGEQG 79 (130)
T ss_dssp CHHHHHHHTTSCCB-TTBCCSEEEEEETTSCEEEECTTCCCCCHHHHHHHHHHHHSTTSSTTTCEEETTEEEEEEEEETT
T ss_pred CHHHHHHhhhcccc-cCCcEeeEEEEeCCCCEEEcCCCcccCCHHHHHHHHHhccCchhhccCCEEECCeEEEEEEeCCC
Confidence 89999999999732 34 99999999999999999999999999999999999999999999999999999999999867
Q ss_pred CeEEEecCCccEEEEEecCCcEEEe
Q 033938 81 AVIRGKKVIYFSHNITFCIDSITLC 105 (108)
Q Consensus 81 ~~iygkkg~~G~~~i~~~~~~~~~~ 105 (108)
++||+||+++|++++||.+ .|||+
T Consensus 80 ~~i~~kkg~~Gv~i~kT~~-aivig 103 (130)
T 3nul_A 80 AVIRGKKGPGGVTIKKTNQ-ALVFG 103 (130)
T ss_dssp TEEEEEETTEEEEEEECSS-EEEEE
T ss_pred cEEEEecCCCeEEEEECCC-EEEEE
Confidence 8999999999999999987 88876
No 3
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=100.00 E-value=2.6e-36 Score=208.18 Aligned_cols=98 Identities=31% Similarity=0.530 Sum_probs=94.4
Q ss_pred chhhhhhhhcccccCCCccceEEEEecCCCEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCCCC
Q 033938 2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGA 81 (108)
Q Consensus 2 SWq~yvd~~Lv~~~~t~~v~~aaIig~dG~vwA~s~gf~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~~ 81 (108)
|||+|||++|++ +|++++|||+|+||++||+|++| +++|+|++.|+++|+||+.++++||+|+|+||+++|+| ++
T Consensus 1 SWq~yvd~~L~~---~g~~~~aAIig~dGsvwA~s~~f-~~~~~E~~~i~~~f~~~~~~~~~Gi~l~G~KY~~i~~d-~~ 75 (125)
T 1acf_A 1 SWQTYVDTNLVG---TGAVTQAAILGLDGNTWATSAGF-AVTPAQGTTLAGAFNNADAIRAGGFDLAGVHYVTLRAD-DR 75 (125)
T ss_dssp CHHHHHHTTTGG---GTSCSEEEEEETTSCEEEECTTC-CCCHHHHHHHHHHHHCCHHHHHHCEEETTEEEEEEEES-SS
T ss_pred ChHHHHHhhhhh---CCCcceEEEEcCCCCEEEecCCC-ccCHHHHHHHHHHhcCcchhhcCCeEECCEEEEEEEec-Cc
Confidence 899999988999 99999999999999999999999 99999999999999999888999999999999999999 89
Q ss_pred eEEEecCCccEEEEEecCCcEEEe
Q 033938 82 VIRGKKVIYFSHNITFCIDSITLC 105 (108)
Q Consensus 82 ~iygkkg~~G~~~i~~~~~~~~~~ 105 (108)
+||+||+++|++++||.. .|||+
T Consensus 76 ~i~~kk~~~Gv~i~kT~~-aivI~ 98 (125)
T 1acf_A 76 SIYGKKGSSGVITVKTSK-AILVG 98 (125)
T ss_dssp EEEEEETTEEEEEEECSS-EEEEE
T ss_pred EEEeecCCCeEEEEECCC-EEEEE
Confidence 999999999999999976 88876
No 4
>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A
Probab=100.00 E-value=3e-36 Score=208.06 Aligned_cols=97 Identities=29% Similarity=0.596 Sum_probs=93.5
Q ss_pred chhhhhhhhcccccCCCccceEEEEecCC-CEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCCC
Q 033938 2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDG-SVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPG 80 (108)
Q Consensus 2 SWq~yvd~~Lv~~~~t~~v~~aaIig~dG-~vwA~s~gf~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~ 80 (108)
|||+|||+ ||+ ++++++|||+|+|| ++||+|++| +++|+|++.|+++|+||+.++++||+|+|+||+++|+| +
T Consensus 1 SWq~yvd~-L~~---~g~~~~aAI~g~DG~svwA~s~~f-~~~~~E~~~i~~~f~~~~~~~~~Gl~l~G~KY~~i~~d-~ 74 (125)
T 1ypr_A 1 SWQAYTDN-LIG---TGKVDKAVIYSRAGDAVWATSGGL-SLQPNEIGEIVQGFDNPAGLQSNGLHIQGQKFMLLRAD-D 74 (125)
T ss_dssp CHHHHHHH-HHH---TSSCSEEEEEETTSCCEEEEESCC-CCCHHHHHHHHHHTTCTHHHHHHCEEETTEEEEEEEEC-S
T ss_pred ChHHHHHH-Hhc---CCCccEEEEEeCCCCcEEEECCCC-ccCHHHHHHHHHhccCcchhccCCeEECCEEEEEEecC-C
Confidence 89999996 999 99999999999999 999999999 99999999999999999888999999999999999999 8
Q ss_pred CeEEEecCCccEEEEEecCCcEEEe
Q 033938 81 AVIRGKKVIYFSHNITFCIDSITLC 105 (108)
Q Consensus 81 ~~iygkkg~~G~~~i~~~~~~~~~~ 105 (108)
++|||||+++|++++||.+ .|||+
T Consensus 75 ~~i~~kk~~~Gi~i~kT~~-aivI~ 98 (125)
T 1ypr_A 75 RSIYGRHDAEGVVCVRTKQ-TVIIA 98 (125)
T ss_dssp SEEEEEETTEEEEEEECSS-EEEEE
T ss_pred cEEEEecCCceEEEEECCC-EEEEE
Confidence 9999999999999999976 88886
No 5
>2jkg_A Profilin; proline-rich ligand, protein-binding, malaria, cytoskeleton; 1.89A {Plasmodium falciparum} PDB: 2jkf_A
Probab=100.00 E-value=1.1e-35 Score=215.90 Aligned_cols=100 Identities=29% Similarity=0.464 Sum_probs=94.9
Q ss_pred CchhhhhhhhcccccCCCccceEEEEec-CCCEEEecC------------------CCC-CC----------CHHHHHHH
Q 033938 1 MSWQTYVDDHLMCDIDGHHLTSAAIVGH-DGSVWAQSS------------------NFP-QF----------KPEEIAAI 50 (108)
Q Consensus 1 MSWq~yvd~~Lv~~~~t~~v~~aaIig~-dG~vwA~s~------------------gf~-~~----------t~~E~~~l 50 (108)
||||+|||++||+ ||+|++|||+|+ ||++||+|+ +|+ ++ +|+|+++|
T Consensus 5 mSWq~YVd~~Ll~---tG~v~~AaI~g~~DG~vwA~s~~~~e~~~~~~~w~~~~k~~f~~~v~~e~g~~~~~~~~E~~~I 81 (179)
T 2jkg_A 5 YSWDSYLNDRLLA---TNQVSGAGLASEEDGVVYACVAQGEESDPNFDKWSLFYKEDYDIEVEDENGTKTTKTINEGQTI 81 (179)
T ss_dssp CCHHHHHHHHTGG---GSSCSEEEEEETTTCCEEEEEESSCTTSTTCCGGGGTCCCCEEEEEECTTCCEEEEEECHHHHH
T ss_pred ccHHHHHHHhhhh---cCCEehheeecccCCCEEEecCccccccccccchhhhccCCchhhhccccCccccCCHHHHHHH
Confidence 9999999999999 999999999999 999999999 885 57 89999999
Q ss_pred HHhcCCCCCCCccceEEcCEEEEEEEeCCC--------CeEEEecCCccEEEEEecCCcEEEe
Q 033938 51 MKDFEEPGSLAPTGLHLGGTKYMVIQGEPG--------AVIRGKKVIYFSHNITFCIDSITLC 105 (108)
Q Consensus 51 ~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~--------~~iygkkg~~G~~~i~~~~~~~~~~ 105 (108)
+++|++ .++++||+|+|+||+++|+|++ ++|||||+++|+|++|||+..|||+
T Consensus 82 ~~~f~~--~~~~~Gv~lgG~KY~~i~~d~d~~~~~~~~~~i~gkKgkgGv~ivKT~~qaiVIg 142 (179)
T 2jkg_A 82 LVVFNE--GYAPDGVWLGGTKYQFINIERDLEFEGYNFDVATCAKLKGGLHLVKVPGGNILVV 142 (179)
T ss_dssp HHHHHH--SCCTTCEEETTEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEETTTEEEEE
T ss_pred HHHHhc--CCCCCCEEECCEEEEEEEecCCccccCcceeEEEEecCCCcEEEEEECCCeEEEE
Confidence 999987 5889999999999999999976 8999999999999999999999997
No 6
>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A*
Probab=100.00 E-value=4.3e-34 Score=200.89 Aligned_cols=98 Identities=33% Similarity=0.477 Sum_probs=91.8
Q ss_pred Cc-hhhhhhhhcccccCCCccceEEEEecCC--CEEEecCC--CCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEE
Q 033938 1 MS-WQTYVDDHLMCDIDGHHLTSAAIVGHDG--SVWAQSSN--FPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVI 75 (108)
Q Consensus 1 MS-Wq~yvd~~Lv~~~~t~~v~~aaIig~dG--~vwA~s~g--f~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~l 75 (108)
|| ||+|||+ |++ +++|++|||+|+|| ++||+|++ |++++|+|+++|+ + +||+.++++||+|+|+||+++
T Consensus 1 MS~Wq~yvd~-L~~---~g~v~~AAIig~dG~~svWA~s~g~~f~~~~~~E~~~i~-~-~d~~~~~~~Gl~l~G~Ky~~i 74 (140)
T 2v8f_A 1 MAGWQSYVDN-LMC---DGCCQEAAIVGYCDAKYVWAATAGGVFQSITPVEIDMIV-G-KDREGFFTNGLTLGAKKCSVI 74 (140)
T ss_dssp -CTTHHHHHH-HHT---TSCEEEEEEEECSSSCSEEEECTTSSGGGCCHHHHHHHH-S-SCSSHHHHHCEEETTEEEEEE
T ss_pred CchHHHHHHH-Hhc---cCCcceEEEEecCCCccEEEECCCCCcccCCHHHHHHHH-c-CCccccccCCeEECCEEEEEE
Confidence 99 9999996 999 99999999999999 99999999 9899999999999 7 999989999999999999999
Q ss_pred Ee----CCCCe--EEEecCCcc----EEEEEecCCcEEEe
Q 033938 76 QG----EPGAV--IRGKKVIYF----SHNITFCIDSITLC 105 (108)
Q Consensus 76 r~----d~~~~--iygkkg~~G----~~~i~~~~~~~~~~ 105 (108)
|+ |++++ ||+||+++| +|++||.+ .|||+
T Consensus 75 r~~l~~d~~~~~di~~kk~~~G~~~~v~i~KT~~-alvI~ 113 (140)
T 2v8f_A 75 RDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGR-VLVFV 113 (140)
T ss_dssp EEETTSTTTCEEEEEECCCSSSCCCEEEEEECSS-EEEEE
T ss_pred ecccccCCCceEEEEEecCCCCCceeEEEEEcCC-EEEEE
Confidence 99 75788 999999999 99999966 88886
No 7
>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding protein; HET: MSE; 1.70A {Toxoplasma gondii}
Probab=100.00 E-value=1.3e-34 Score=208.69 Aligned_cols=100 Identities=26% Similarity=0.378 Sum_probs=92.5
Q ss_pred Cc-hhhhhhhhcccccCCCccceEEEEe-cCCCEEEecCCC------------------------CCCCHHHHHHHHHhc
Q 033938 1 MS-WQTYVDDHLMCDIDGHHLTSAAIVG-HDGSVWAQSSNF------------------------PQFKPEEIAAIMKDF 54 (108)
Q Consensus 1 MS-Wq~yvd~~Lv~~~~t~~v~~aaIig-~dG~vwA~s~gf------------------------~~~t~~E~~~l~~~f 54 (108)
|| ||+|||++|++ +++|++|||+| +||++||+|++| ++++|+|+++|+++|
T Consensus 4 MS~Wq~YVd~~L~~---~g~v~~AAI~g~~DG~vWA~s~~~~~~w~~~~~~~y~~~v~~~~g~~~~~~~~~E~~~i~~~f 80 (166)
T 3nec_A 4 MSDWDPVVKEWLVD---TGYCCAGGIANAEDGVVFAAAADDDDGWSKLYKDDHEEDTIGEDGNACGKVSINEASTIKAAV 80 (166)
T ss_dssp -CCCHHHHHHHHTT---TSSCSEEEEEETTTCCEEEEEETTSCHHHHHCCCCEEEEEECTTSCEEEEEEECHHHHHHHHH
T ss_pred ccHHHHHHHHHhhc---cCceeEEEEEecCCCCEEeecCCCCcccccccccccccccccccccccccCCHHHHHHHHHHh
Confidence 99 99999999999 99999999999 799999999999 367999999999999
Q ss_pred CCCCCCCccceEEcCEEEEEEEeCCC--------CeEEEecCCccEEEEEecCCcEEEe
Q 033938 55 EEPGSLAPTGLHLGGTKYMVIQGEPG--------AVIRGKKVIYFSHNITFCIDSITLC 105 (108)
Q Consensus 55 ~d~~~~~~~Gi~l~G~KY~~lr~d~~--------~~iygkkg~~G~~~i~~~~~~~~~~ 105 (108)
+++ ++++||+|+|+||+++|+|++ ++||+||+++|+|++||+++.|||+
T Consensus 81 ~~~--~~~~Gl~lgG~KY~~ir~d~~~~~~~~~~~~i~~kK~~~Gv~i~KT~~~aiVI~ 137 (166)
T 3nec_A 81 DDG--SAPNGVWIGGQKYKVVRPEKGFEYNDCTFDITMCARSKGGAHLIKTPNGSIVIA 137 (166)
T ss_dssp HHS--CCTTCEEETTEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEECTTSEEEEE
T ss_pred hcC--CccCCeEEeCeEEEEEEecCCccccccceeEEEeccCCceEEEEEeCCCEEEEE
Confidence 884 588999999999999999943 7899999999999999999999997
No 8
>2pbd_P Profilin-1, profilin I; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens} SCOP: d.110.1.1 PDB: 1fik_A 1cjf_A 1pfl_A 1fil_A* 2pav_P* 3chw_P* 1awi_A 1cf0_A* 1pne_A 1hlu_P 2btf_P* 3u4l_P* 3ub5_P*
Probab=99.97 E-value=4.2e-31 Score=185.31 Aligned_cols=96 Identities=30% Similarity=0.479 Sum_probs=90.4
Q ss_pred hhhhhhhhcccccCCCccceEEEEecCC--CEEEecCC--CCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEe-
Q 033938 3 WQTYVDDHLMCDIDGHHLTSAAIVGHDG--SVWAQSSN--FPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQG- 77 (108)
Q Consensus 3 Wq~yvd~~Lv~~~~t~~v~~aaIig~dG--~vwA~s~g--f~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~- 77 (108)
||+|||+ |++ +++|++|||+|+|| ++||+|++ |++++|+|++.|+ + +||+.++++||+|+|+||+++|.
T Consensus 3 Wq~Yvd~-L~~---~g~~~~AAIig~dG~~svWA~s~g~~f~~~~~~E~~~i~-~-~d~~~~~~~Gl~lgG~Ky~~ir~~ 76 (139)
T 2pbd_P 3 WNAYIDN-LMA---DGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLV-G-KDRSSFYVNGLTLGGQKCSVIRDS 76 (139)
T ss_dssp SHHHHHH-HHT---TSCEEEEEEEESSSSCEEEEECTTSSGGGCCHHHHHHHH-S-SCCSTHHHHCEEETTEEEEEEEEE
T ss_pred hHHHHHH-Hhc---cCCcceEEEEecCCCccEEEECCCCCcccCCHHHHHHHH-c-cCcccccccCeEECCEEEEEEecc
Confidence 9999996 999 99999999999999 99999999 9899999999999 6 88988999999999999999999
Q ss_pred ---CCCCeE--EEecCCcc----EEEEEecCCcEEEe
Q 033938 78 ---EPGAVI--RGKKVIYF----SHNITFCIDSITLC 105 (108)
Q Consensus 78 ---d~~~~i--ygkkg~~G----~~~i~~~~~~~~~~ 105 (108)
|+++++ |+||+++| +|++||.. .|||+
T Consensus 77 ~~~d~~~~id~~~kk~~~G~~~~v~i~KT~~-alvI~ 112 (139)
T 2pbd_P 77 LLQDGEFSMDLRTKSTGGAPTFNVTVTKTDK-TLVLL 112 (139)
T ss_dssp TTCTTTCEEEEEECCSTTCCCCEEEEEECSS-EEEEE
T ss_pred cccCCCcEEeeeeccCCCCCceEEEEEEcCC-EEEEE
Confidence 757898 99999999 99999966 88886
No 9
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=89.23 E-value=1.5 Score=29.10 Aligned_cols=83 Identities=14% Similarity=0.083 Sum_probs=44.6
Q ss_pred hcccccCCCccceEEEEecCCCEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCCCCeEEEec-C
Q 033938 10 HLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK-V 88 (108)
Q Consensus 10 ~Lv~~~~t~~v~~aaIig~dG~vwA~s~gf~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~~~iygkk-g 88 (108)
+|+. ..+.+..|++++.||-+-+++.+.....++-+..+.+.+-.-......=+..+..+.++++.+ +..++-.. |
T Consensus 11 ~l~~--~v~gv~~avlvs~DGl~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~~~~G~~~qv~ve~~-~G~l~v~~ag 87 (126)
T 3leq_A 11 GLVD--RVAEVDHAVVLSEDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMDFRRGPVRQALIEMG-KGYLILTAAG 87 (126)
T ss_dssp HHHH--HCTTEEEEEEEETTSCEEEECTTSCHHHHHHHHHHHHHHHHC-------------CEEEEECS-SCEEEEEESS
T ss_pred HHHh--cCCCceEEEEEcCCCcEEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEeC-CCEEEEEEeC
Confidence 5652 167899999999999999988766112345555555555332222222345677888899998 45555333 4
Q ss_pred CccEEEE
Q 033938 89 IYFSHNI 95 (108)
Q Consensus 89 ~~G~~~i 95 (108)
..-+.++
T Consensus 88 ~~a~L~v 94 (126)
T 3leq_A 88 PGAHLVV 94 (126)
T ss_dssp TTEEEEE
T ss_pred CCcEEEE
Confidence 3333333
No 10
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=78.87 E-value=1.5 Score=30.48 Aligned_cols=77 Identities=13% Similarity=0.030 Sum_probs=45.9
Q ss_pred hcccccCCCccceEEEEecCCCEEEe-----cCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCCCCeEE
Q 033938 10 HLMCDIDGHHLTSAAIVGHDGSVWAQ-----SSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIR 84 (108)
Q Consensus 10 ~Lv~~~~t~~v~~aaIig~dG~vwA~-----s~gf~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~~~iy 84 (108)
.|+. ...+..|++++.||-+-++ +... . ..+-+..+.+.+-.-......=+.-++.+-.+++.+ +..+|
T Consensus 22 ~L~~---v~Gv~~avlvs~DGl~ia~~~~~~~~~~-~-d~d~lAA~~A~~~sl~~~~a~~l~~G~~~q~~ve~~-~g~l~ 95 (163)
T 1j3w_A 22 ETLR---ETGARYALLIDRKGFVLAHKEALWAPKP-P-PLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGE-RMGLY 95 (163)
T ss_dssp HHHH---HHCCSEEEEEETTSCEEEEEECTTSCCC-S-CHHHHHHHHHHHHHHTHHHHHHTTCSSCSEEEEECS-SCEEE
T ss_pred HHhc---cCCceEEEEEcCCCCEEEeecccccCCC-C-cHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeC-CcEEE
Confidence 4555 4579999999999998888 7666 5 676666666544221111111122345566777777 55666
Q ss_pred EecCCccE
Q 033938 85 GKKVIYFS 92 (108)
Q Consensus 85 gkkg~~G~ 92 (108)
-..=..+.
T Consensus 96 v~~~g~~a 103 (163)
T 1j3w_A 96 VDEAGEHA 103 (163)
T ss_dssp EEESSTTE
T ss_pred EEEeCCCe
Confidence 54433333
No 11
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=52.22 E-value=14 Score=24.21 Aligned_cols=64 Identities=16% Similarity=0.216 Sum_probs=40.7
Q ss_pred CCccceEEEEecCCCEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccc---eEEcCEEEEEEEeCCCCeEE
Q 033938 17 GHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTG---LHLGGTKYMVIQGEPGAVIR 84 (108)
Q Consensus 17 t~~v~~aaIig~dG~vwA~s~gf~~~t~~E~~~l~~~f~d~~~~~~~G---i~l~G~KY~~lr~d~~~~iy 84 (108)
+..+.++++++.||-+-|++.. .....+-+..+.+.+-.- ....| +.-++.+..++..+ +..++
T Consensus 16 ~~gv~~a~lvs~DGllia~s~~-~~~dae~laAias~~~sl--~~~~~~~~~~~g~~~q~~ve~~-~G~l~ 82 (125)
T 1vet_B 16 TGGVQSTLLLNNEGSLLAYSGY-GDTDARVTAAIASNIWAA--YDRNGNQAFNEDSLKFILMDCM-EGRVA 82 (125)
T ss_dssp CTTEEEEEEECTTCCEEEEEEC-CSSCHHHHHHHHHHHHHH--HHHHHCCTTTCCCCCEEEEEET-TEEEE
T ss_pred CCCceEEEEECCCCCeEEecCC-CCccHHHHHHHHHHHHHH--HHHHHHHhcCCCCcEEEEEEeC-CCEEE
Confidence 6689999999999998887654 355777777777765210 00000 11255677777777 44444
No 12
>3kye_A Roadblock/LC7 domain, ROBL_LC7; alpga-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces avermitilis}
Probab=42.28 E-value=4.5 Score=27.92 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=24.8
Q ss_pred CCccceEEEEecCCCEEEecCCCCCCCHHHHHHHHHh
Q 033938 17 GHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKD 53 (108)
Q Consensus 17 t~~v~~aaIig~dG~vwA~s~gf~~~t~~E~~~l~~~ 53 (108)
...+..|++++.||- -++|.+.+...++-+..+.+.
T Consensus 38 vpGV~~AvvvS~DGL-la~S~~l~~~dae~LAA~aSg 73 (150)
T 3kye_A 38 VPHTTSAVLLSCDGL-VKSVHGLDPDSADHMAALASG 73 (150)
T ss_dssp STTEEEEEEEETTSC-EEEEESSCHHHHHHHHHHHHH
T ss_pred CCCeeEEEEEcCCCC-EeecCCCCCCCHHHHHHHHHH
Confidence 678999999999999 777767622333444444443
No 13
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=40.84 E-value=1.1e+02 Score=22.74 Aligned_cols=60 Identities=8% Similarity=0.104 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCC--------CCeEEEecCCccEEEEEecCCcEEE
Q 033938 38 NFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEP--------GAVIRGKKVIYFSHNITFCIDSITL 104 (108)
Q Consensus 38 gf~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~--------~~~iygkkg~~G~~~i~~~~~~~~~ 104 (108)
+| +-+.+|+..++.+|.+| ....=..++|+++.+.++.. +..|.... + +.|.|+.+.|.|
T Consensus 209 dw-~~~a~~i~~~iRa~~~p--~Pga~~~~~g~~~ki~~a~~~~~~~~~~pG~i~~~~---~-~~V~~~dg~l~i 276 (305)
T 2bln_A 209 EW-HKPASVLHNMVRAVADP--WPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVA---P-LLIACGDGALEI 276 (305)
T ss_dssp CT-TSBHHHHHHHHHHTCTT--SCCEEEEETTEEEEEEEEEEECSCCCSCTTBEEEET---T-EEEECSBSEEEE
T ss_pred CC-cCCHHHHHHHHhccCCC--CCceEEEECCEEEEEEEEEEccCCCCCCCCEEEEEC---C-EEEEeCCceEEE
Confidence 57 66899999999999755 22222467899998887631 12333321 2 667777765554
No 14
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=33.08 E-value=29 Score=25.88 Aligned_cols=40 Identities=18% Similarity=0.265 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCC--CCeEEEecCCccEEEEE
Q 033938 41 QFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEP--GAVIRGKKVIYFSHNIT 96 (108)
Q Consensus 41 ~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~--~~~iygkkg~~G~~~i~ 96 (108)
+++.+.++.|+. .|++||+++ .+. ...||++| ..|+|+|.
T Consensus 8 ~~~e~~v~~lL~----------AGvH~G~~~-----wnpkM~~YIy~~R-~nGIhIId 49 (252)
T 3u5c_A 8 DLTPEDAQLLLA----------ANTHLGARN-----VQVHQEPYVFNAR-PDGVHVIN 49 (252)
T ss_dssp SCCHHHHHHHHH----------HTTTEECSS-----CCCTTCCCEEEEE-TTTEEEEC
T ss_pred ccCHHHHHHHHH----------CCeeccCCc-----CCcCchhheeccc-CCCcEEec
Confidence 667777777765 388999653 332 57899987 46899884
No 15
>2k49_A UPF0339 protein SO_3888; solution structure, structural genomics, unknown functio protein structure initiative; NMR {Shewanella oneidensis} SCOP: d.348.1.1 d.348.1.1
Probab=29.43 E-value=1.2e+02 Score=19.78 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=36.2
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHHHhcCC--C-CCCCccceEEcCEEEEEEEeCCCCeEEEec
Q 033938 28 HDGSVWAQSSNFPQFKPEEIAAIMKDFEE--P-GSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 87 (108)
Q Consensus 28 ~dG~vwA~s~gf~~~t~~E~~~l~~~f~d--~-~~~~~~Gi~l~G~KY~~lr~d~~~~iygkk 87 (108)
.+|.+-++|.+| . +...+..=+..++. | ...+.--..-+|+-|+.|++. ..-|.|+.
T Consensus 22 ~NgeiI~sSe~Y-~-sk~~a~~gI~sVk~na~~~~~fe~~~~~~gk~yF~Lka~-NgqvIg~S 81 (118)
T 2k49_A 22 GNGEVILTSELY-T-GKSGAMNGIESVQTNSPIEARYAKEVAKNDKPYFNLKAA-NHQIIGTS 81 (118)
T ss_dssp SSSCEEEECCCB-S-SHHHHHHHHHHHHHHTTCGGGEEEEEETTTEEEEEEECT-TCCEEEEB
T ss_pred CCCCEEEECCCc-C-CHHHHHHHHHHHHHhCcccceEEEEEccCCCEEEEEEcC-CCcEEEEc
Confidence 489999999998 5 45544444443321 1 123444566678999999998 56666654
No 16
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=28.01 E-value=1.8e+02 Score=21.35 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=28.6
Q ss_pred CCCCCCHHHHHHHHHhcC-CCCCCCccceEEcCEEEEEEEeC
Q 033938 38 NFPQFKPEEIAAIMKDFE-EPGSLAPTGLHLGGTKYMVIQGE 78 (108)
Q Consensus 38 gf~~~t~~E~~~l~~~f~-d~~~~~~~Gi~l~G~KY~~lr~d 78 (108)
+| +-+.+|+..++.+|. +|- +..=..++|+++.+.++.
T Consensus 203 dw-~~~a~~I~~~IRa~~~~p~--PgA~t~~~g~~~ki~~a~ 241 (260)
T 1zgh_A 203 SP-DFDLEKIYDYIRMLDGEGY--PRAFIKYGKYRLEFSRAS 241 (260)
T ss_dssp CT-TSCHHHHHHHHHHTCSTTC--CCCEEEETTEEEEEEEEE
T ss_pred Cc-ccCHHHHHHHHHhhCCCCC--CcEEEEECCEEEEEEEEE
Confidence 57 678999999999996 452 222246799999998876
No 17
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=27.17 E-value=35 Score=21.77 Aligned_cols=17 Identities=18% Similarity=0.573 Sum_probs=15.0
Q ss_pred ccceEEcCEEEEEEEeC
Q 033938 62 PTGLHLGGTKYMVIQGE 78 (108)
Q Consensus 62 ~~Gi~l~G~KY~~lr~d 78 (108)
.+=+.++|++|+++|.+
T Consensus 75 Gtevk~dgeey~i~re~ 91 (99)
T 1p3h_A 75 GTEIKYNGEEYLILSAR 91 (99)
T ss_dssp CEEEEETTEEEEEEEGG
T ss_pred CeEEEECCEEEEEEEhH
Confidence 45699999999999988
No 18
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=26.88 E-value=36 Score=21.55 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=15.0
Q ss_pred ccceEEcCEEEEEEEeC
Q 033938 62 PTGLHLGGTKYMVIQGE 78 (108)
Q Consensus 62 ~~Gi~l~G~KY~~lr~d 78 (108)
.+=+.++|++|+++|.+
T Consensus 72 Gtevk~dg~ey~i~re~ 88 (95)
T 3nx6_A 72 GSSYKSEGVEYKVLRED 88 (95)
T ss_dssp SEEEEETTEEEEEEEGG
T ss_pred CeEEEECCEEEEEEEHH
Confidence 45689999999999987
No 19
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=26.74 E-value=37 Score=21.62 Aligned_cols=17 Identities=0% Similarity=0.155 Sum_probs=15.0
Q ss_pred ccceEEcCEEEEEEEeC
Q 033938 62 PTGLHLGGTKYMVIQGE 78 (108)
Q Consensus 62 ~~Gi~l~G~KY~~lr~d 78 (108)
.+=+.++|++|+++|.+
T Consensus 73 Gtevk~dgeey~i~re~ 89 (97)
T 1pcq_O 73 VKSEKIDNEEVLIMSES 89 (97)
T ss_dssp CEEEEETTEEEEEEEGG
T ss_pred CeEEEECCEEEEEEEhH
Confidence 45599999999999988
No 20
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=26.49 E-value=11 Score=28.24 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=25.6
Q ss_pred CCCCccceEEcCEEEEEEEeCCCCeEEEecCCccEEEEE
Q 033938 58 GSLAPTGLHLGGTKYMVIQGEPGAVIRGKKVIYFSHNIT 96 (108)
Q Consensus 58 ~~~~~~Gi~l~G~KY~~lr~d~~~~iygkkg~~G~~~i~ 96 (108)
..+...|++||.+.-..-.-. ...||+++ .|+|+|.
T Consensus 8 ~~LL~AgvH~Gh~t~~wnpkM-~~YIyg~R--ngihIId 43 (256)
T 2vqe_B 8 KELLEAGVHFGHERKRWNPKF-ARYIYAER--NGIHIID 43 (256)
T ss_dssp CSTTCSSTTCCCBSSSCCGGG-STTEEEEE--TTEEEEC
T ss_pred HHHHHcCeeeccCcCCCCCcc-ccceeccc--CCeEEEe
Confidence 456788999998743222233 57899988 8999985
No 21
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=26.29 E-value=62 Score=18.13 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=15.3
Q ss_pred CCCCCCCHHHHHHHHHhcCC
Q 033938 37 SNFPQFKPEEIAAIMKDFEE 56 (108)
Q Consensus 37 ~gf~~~t~~E~~~l~~~f~d 56 (108)
|.|..+|++|++.|+.-+..
T Consensus 58 p~~~~Ls~~ei~~l~~yl~~ 77 (79)
T 2d0s_A 58 PPHPQVAEADIEKIVRWVLT 77 (79)
T ss_dssp CCCTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 34657899999999987653
No 22
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=25.87 E-value=2.6e+02 Score=22.43 Aligned_cols=60 Identities=8% Similarity=0.104 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCC--------CCeEEEecCCccEEEEEecCCcEEE
Q 033938 38 NFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEP--------GAVIRGKKVIYFSHNITFCIDSITL 104 (108)
Q Consensus 38 gf~~~t~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~--------~~~iygkkg~~G~~~i~~~~~~~~~ 104 (108)
+| +-+.+|+..++.+|.+| ....=..++|+++.+.++.. +..|.... + ++|.|+++.|.|
T Consensus 209 dw-~~~a~~i~~~ira~~~p--~p~a~~~~~~~~~~i~~~~~~~~~~~~~pG~i~~~~---~-~~v~~~~g~~~i 276 (660)
T 1z7e_A 209 EW-HKPASVLHNMVRAVADP--WPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVA---P-LLIACGDGALEI 276 (660)
T ss_dssp CT-TSBHHHHHHHHHHTCTT--SCCEEEEETTEEEEEEECCEECCCCSSCTTSEEEET---T-EEEECSBSEEEE
T ss_pred CC-CCCHHHHHHHHhccCCC--CCceEEEECCEEEEEEEEEEccccCCCCCcEEEecC---c-EEEEeCCCeEEE
Confidence 46 66889999999999765 22222467899999888641 12222221 1 667777665554
No 23
>2lqc_B Voltage-dependent L-type calcium channel subunit; metal binding protein-transport protein complex; NMR {Homo sapiens}
Probab=27.61 E-value=19 Score=17.59 Aligned_cols=8 Identities=50% Similarity=1.170 Sum_probs=6.5
Q ss_pred Cchhhhhh
Q 033938 1 MSWQTYVD 8 (108)
Q Consensus 1 MSWq~yvd 8 (108)
.|||+-||
T Consensus 6 LSWQAAId 13 (26)
T 2lqc_B 6 LSWQAAID 13 (26)
Confidence 47999888
No 24
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=21.96 E-value=24 Score=23.10 Aligned_cols=22 Identities=14% Similarity=0.507 Sum_probs=16.0
Q ss_pred ceEEEEecCCCEEEecCCCCCCCHHH
Q 033938 21 TSAAIVGHDGSVWAQSSNFPQFKPEE 46 (108)
Q Consensus 21 ~~aaIig~dG~vwA~s~gf~~~t~~E 46 (108)
..|+|++++|+.|. || .++|.+
T Consensus 74 ~~~Viid~~g~Fvs---Gw-Kl~p~q 95 (107)
T 1v74_A 74 MNVVIIKSNGEFLS---GW-KINPDA 95 (107)
T ss_dssp CEEEEECTTSCEEE---EE-ECCTTS
T ss_pred CeEEEEcCCCCEEE---EE-EcCCCc
Confidence 37999999998765 55 555543
No 25
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=21.42 E-value=34 Score=21.94 Aligned_cols=17 Identities=18% Similarity=0.569 Sum_probs=15.0
Q ss_pred ccceEEcCEEEEEEEeC
Q 033938 62 PTGLHLGGTKYMVIQGE 78 (108)
Q Consensus 62 ~~Gi~l~G~KY~~lr~d 78 (108)
.+=+.++|++|+++|.+
T Consensus 77 Gtevk~dgeeyli~re~ 93 (100)
T 1we3_O 77 GTEIEIDGEEYVILSER 93 (100)
T ss_dssp SEEEECSSCEEEEECTT
T ss_pred CeEEEECCEEEEEEEhH
Confidence 45699999999999988
Done!