BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033939
         (108 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3JR1|A Chain A, Crystal Structure Of Putative Fructosamine-3-Kinase
           (Yp_719053.1) From Haemophilus Somnus 129pt At 2.32 A
           Resolution
 pdb|3JR1|B Chain B, Crystal Structure Of Putative Fructosamine-3-Kinase
           (Yp_719053.1) From Haemophilus Somnus 129pt At 2.32 A
           Resolution
          Length = 312

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 15/79 (18%)

Query: 37  IVAKGGKIKTDKPYGVNGG----MDLREGLDASGRKAKGKGVY----------QFVDKYG 82
           ++AK   I     YG+         L E L+ S  K     ++          Q  DKYG
Sbjct: 84  LLAKTNSINVPLVYGIGNSQGHSFLLLEALNKSKNKQSSFTIFAEKIAQLHQIQGPDKYG 143

Query: 83  ANVDGYS-PIYNENDWSPS 100
            + D +  PIY  NDW  S
Sbjct: 144 LDFDTWLGPIYQPNDWQTS 162


>pdb|2JZK|A Chain A, Structure Of Tbcvnh (T. Borchii Cvnh) (Casp Target)
          Length = 106

 Score = 26.9 bits (58), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 26  GLPSLAKTSFKI-VAKGGKIKTDKPYGVNGGMDLREGLDASG-RKAKGKGVYQ 76
           G+ + + +S  I + +GG+  T +P  V+GG   R+G+D +  +   G+ V+Q
Sbjct: 54  GMQNFSHSSEDIKLEEGGRKLTCRPKTVDGGFRERQGIDLNRIQNVNGRLVFQ 106


>pdb|3S18|A Chain A, Crystal Structure Of A Plant Albumin From Cicer Arietinum
           Showing Hemagglutination
 pdb|3S18|B Chain B, Crystal Structure Of A Plant Albumin From Cicer Arietinum
           Showing Hemagglutination
          Length = 227

 Score = 25.8 bits (55), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 36  KIVAKGGKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFV-DKYGANVD 86
           KI++   KI    P+    G     G+DA+ R  KGK VY F  DKY A +D
Sbjct: 96  KIISGPKKIADMFPFF--KGTVFENGIDAAFRSTKGKEVYLFKGDKY-ARID 144


>pdb|3V6N|A Chain A, Crystal Structure Of A Plant Albumin From Cicer Arietinum
           Showing Hemagglutination
 pdb|3V6N|B Chain B, Crystal Structure Of A Plant Albumin From Cicer Arietinum
           Showing Hemagglutination
 pdb|4HSD|A Chain A, Crystal Structure Of A New Form Of Plant Lectin From Cicer
           Arietinum At 2.45 Angstrom Resolution
 pdb|4HSD|B Chain B, Crystal Structure Of A New Form Of Plant Lectin From Cicer
           Arietinum At 2.45 Angstrom Resolution
          Length = 227

 Score = 25.8 bits (55), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 36  KIVAKGGKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFV-DKYGANVD 86
           KI++   KI    P+    G     G+DA+ R  KGK VY F  DKY A +D
Sbjct: 96  KIISGPKKIADMFPFF--KGTVFENGIDAAFRSTKGKEVYLFKGDKY-ARID 144


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.135    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,586,611
Number of Sequences: 62578
Number of extensions: 158858
Number of successful extensions: 254
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 8
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)