Query 033939
Match_columns 108
No_of_seqs 53 out of 55
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 13:22:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pvc_A TRNA 5-methylaminomethy 46.2 5.9 0.0002 32.5 0.8 15 85-99 177-191 (689)
2 3vyw_A MNMC2; tRNA wobble urid 26.0 15 0.00051 29.1 0.1 14 86-99 193-206 (308)
3 1h80_A IOTA-carrageenase; hydr 25.8 23 0.00077 29.2 1.2 15 92-106 387-401 (464)
4 2htj_A P fimbrial regulatory p 21.4 82 0.0028 18.6 2.8 15 83-97 62-76 (81)
5 3tr3_A BOLA; cellular processe 19.7 8.2 0.00028 25.3 -2.2 9 91-99 73-81 (82)
6 1v60_A BOLA1, riken cDNA 18100 16.6 49 0.0017 23.2 1.1 12 91-102 103-114 (123)
7 2yuy_A RHO GTPase activating p 16.6 88 0.003 20.0 2.3 18 81-98 21-38 (126)
8 1nrp_R Receptor based peptide 15.5 50 0.0017 18.3 0.7 13 85-97 12-24 (26)
9 1nro_R Receptor based peptide 14.8 57 0.0019 18.1 0.9 15 85-99 12-26 (27)
10 3ps9_A TRNA 5-methylaminomethy 12.5 47 0.0016 26.9 0.2 15 85-99 185-199 (676)
No 1
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=46.19 E-value=5.9 Score=32.47 Aligned_cols=15 Identities=33% Similarity=0.913 Sum_probs=11.8
Q ss_pred CCCccccccCCCCCC
Q 033939 85 VDGYSPIYNENDWSP 99 (108)
Q Consensus 85 VDgYSPIY~p~ews~ 99 (108)
.||+||-+|||-|++
T Consensus 177 lD~f~p~~np~~w~~ 191 (689)
T 3pvc_A 177 LDGFAPAKNPDMWNE 191 (689)
T ss_dssp ECSSCC--CCTTCSH
T ss_pred ECCCCCCCChhhhhH
Confidence 599999999999975
No 2
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=25.98 E-value=15 Score=29.05 Aligned_cols=14 Identities=36% Similarity=0.736 Sum_probs=13.3
Q ss_pred CCccccccCCCCCC
Q 033939 86 DGYSPIYNENDWSP 99 (108)
Q Consensus 86 DgYSPIY~p~ews~ 99 (108)
||+||-=+||-|++
T Consensus 193 DgFsP~kNPeLWs~ 206 (308)
T 3vyw_A 193 DAFSPYKNPELWTL 206 (308)
T ss_dssp CCSCTTTSGGGGSH
T ss_pred CCCCcccCcccCCH
Confidence 99999999999986
No 3
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A
Probab=25.84 E-value=23 Score=29.24 Aligned_cols=15 Identities=33% Similarity=0.906 Sum_probs=13.1
Q ss_pred ccCCCCCCCCCcccC
Q 033939 92 YNENDWSPSGDVYTG 106 (108)
Q Consensus 92 Y~p~ews~~GD~Y~g 106 (108)
++||||+.+|..|.|
T Consensus 387 ~~~~~~~~~~~~~~~ 401 (464)
T 1h80_A 387 PTKEQWSKQGQIYIG 401 (464)
T ss_dssp CCTTTCSSTTSCEEE
T ss_pred cCCccccCCCcEEeC
Confidence 579999999998876
No 4
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=21.35 E-value=82 Score=18.63 Aligned_cols=15 Identities=13% Similarity=-0.028 Sum_probs=12.3
Q ss_pred cCCCCccccccCCCC
Q 033939 83 ANVDGYSPIYNENDW 97 (108)
Q Consensus 83 ANVDgYSPIY~p~ew 97 (108)
..+.+++++||.-|-
T Consensus 62 ~~~~~~~~~~~~~~~ 76 (81)
T 2htj_A 62 EKQAGQSCSSTTLEH 76 (81)
T ss_dssp CSSSSCGGGGCSSSC
T ss_pred hhhccHHHHHhHHhh
Confidence 488999999998653
No 5
>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}
Probab=19.67 E-value=8.2 Score=25.28 Aligned_cols=9 Identities=11% Similarity=0.575 Sum_probs=5.5
Q ss_pred cccCCCCCC
Q 033939 91 IYNENDWSP 99 (108)
Q Consensus 91 IY~p~ews~ 99 (108)
.|||+||..
T Consensus 73 t~Tp~Ew~~ 81 (82)
T 3tr3_A 73 TYTPDEYER 81 (82)
T ss_dssp EECHHHHHC
T ss_pred eCCHHHHhc
Confidence 366777754
No 6
>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=16.64 E-value=49 Score=23.22 Aligned_cols=12 Identities=8% Similarity=0.318 Sum_probs=9.0
Q ss_pred cccCCCCCCCCC
Q 033939 91 IYNENDWSPSGD 102 (108)
Q Consensus 91 IY~p~ews~~GD 102 (108)
.|||+||....+
T Consensus 103 t~TP~Ew~~~~~ 114 (123)
T 1v60_A 103 AKTPAQWRENPQ 114 (123)
T ss_dssp EECTTTTTTCCC
T ss_pred ecCHHHHHhccC
Confidence 489999987543
No 7
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=16.58 E-value=88 Score=19.95 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=15.7
Q ss_pred cccCCCCccccccCCCCC
Q 033939 81 YGANVDGYSPIYNENDWS 98 (108)
Q Consensus 81 yGANVDgYSPIY~p~ews 98 (108)
||.++|+|+--++|+++.
T Consensus 21 ~Gf~l~~~t~y~~~~~~~ 38 (126)
T 2yuy_A 21 FGFTLRHFIVYPPESAIQ 38 (126)
T ss_dssp CSCCBCCCCCCCCSSCCC
T ss_pred cceeecCccccCCHHHHH
Confidence 688999999988888886
No 8
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=15.45 E-value=50 Score=18.26 Aligned_cols=13 Identities=23% Similarity=0.695 Sum_probs=10.4
Q ss_pred CCCccccccCCCC
Q 033939 85 VDGYSPIYNENDW 97 (108)
Q Consensus 85 VDgYSPIY~p~ew 97 (108)
-|-|.|.|..||.
T Consensus 12 ndkyepfwedee~ 24 (26)
T 1nrp_R 12 NDKYEPFWEDEEX 24 (26)
T ss_pred CcccCcccccccc
Confidence 3789999988774
No 9
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=14.83 E-value=57 Score=18.15 Aligned_cols=15 Identities=20% Similarity=0.583 Sum_probs=10.8
Q ss_pred CCCccccccCCCCCC
Q 033939 85 VDGYSPIYNENDWSP 99 (108)
Q Consensus 85 VDgYSPIY~p~ews~ 99 (108)
-|-|.|.|..||=.+
T Consensus 12 ndkyepfwedeekne 26 (27)
T 1nro_R 12 NDKYEPFWEDEEKNE 26 (27)
T ss_pred CcccCccccchhhcc
Confidence 378999998776443
No 10
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=12.51 E-value=47 Score=26.89 Aligned_cols=15 Identities=33% Similarity=0.933 Sum_probs=13.7
Q ss_pred CCCccccccCCCCCC
Q 033939 85 VDGYSPIYNENDWSP 99 (108)
Q Consensus 85 VDgYSPIY~p~ews~ 99 (108)
.||+||-=+||-|++
T Consensus 185 ~D~f~p~~np~~w~~ 199 (676)
T 3ps9_A 185 LDGFAPAKNPDMWTQ 199 (676)
T ss_dssp ECCSCGGGCGGGSCH
T ss_pred ECCCCCcCChhhhhH
Confidence 599999999999985
Done!