BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033941
(108 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4R8M1|SELK_MACFA Selenoprotein K OS=Macaca fascicularis GN=SELK PE=3 SV=3
Length = 94
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 1 MAYVERGVVKSKRSI--WRISTITDFFWSIINFIGVFFATMFSMEKSDNYRKGSRSSKKW 58
M Y+ G V RS WR+S ITDFFW I F+ +FF T+ + G+ S ++
Sbjct: 1 MVYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRSYGNSSDSRY 60
Query: 59 DGGPGGPGSGP 69
D G G PG+ P
Sbjct: 61 DDGRGPPGNPP 71
>sp|Q9Y6D0|SELK_HUMAN Selenoprotein K OS=Homo sapiens GN=SELK PE=1 SV=3
Length = 94
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 1 MAYVERGVVKSKRSI--WRISTITDFFWSIINFIGVFFATMFSMEKSDNYRKGSRSSKKW 58
M Y+ G V RS WR+S ITDFFW I F+ +FF T+ + G+ S ++
Sbjct: 1 MVYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRSYGNSSDSRY 60
Query: 59 DGGPGGPGSGP 69
D G G PG+ P
Sbjct: 61 DDGRGPPGNPP 71
>sp|Q32PE3|SELK_BOVIN Selenoprotein K OS=Bos taurus GN=SELK PE=3 SV=3
Length = 95
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 1 MAYVERGVVKSKRSI--WRISTITDFFWSIINFIGVFFATMFSMEKSDNYRKGSRSSKKW 58
M Y+ G V RS WR+S ITDFFW I F+ +FF T+ + GS S ++
Sbjct: 1 MVYISNGQVLDSRSQSPWRLSFITDFFWGIAEFVVLFFRTLLQQDVKKRRGYGSSSDSRY 60
Query: 59 DGGPGGPGSGP 69
D G G PG+ P
Sbjct: 61 DDGRGPPGNPP 71
>sp|Q9JLJ1|SELK_MOUSE Selenoprotein K OS=Mus musculus GN=Selk PE=2 SV=3
Length = 94
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 1 MAYVERGVVKSKR--SIWRISTITDFFWSIINFIGVFFATMFSMEKSDNYRKGSRSSKKW 58
M Y+ G V R S WR+S +TDFFW I F+ FF T+ + GS S ++
Sbjct: 1 MVYISNGQVLDSRNQSPWRVSFLTDFFWGIAEFVVFFFKTLLQQDVKKRRGYGSSSDSRY 60
Query: 59 DGGPGGPGSGP 69
D G G PG+ P
Sbjct: 61 DDGRGPPGNPP 71
>sp|Q6S9C4|SELK_CHILA Selenoprotein K OS=Chinchilla lanigera GN=SELK PE=3 SV=3
Length = 94
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 1 MAYVERGVVKSKRSI--WRISTITDFFWSIINFIGVFFATMFS--MEKSDNYRKGSRSSK 56
M Y+ G V RS WR+S ITDFFW I F+ +FF T+ ++K YR S S
Sbjct: 1 MVYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKGRGYRNSSDS-- 58
Query: 57 KWDGGPGGPGSGP 69
++D G G PG+ P
Sbjct: 59 RYDDGRGPPGNPP 71
>sp|P59798|SELK_RAT Selenoprotein K OS=Rattus norvegicus GN=Selk PE=3 SV=2
Length = 94
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 1 MAYVERGVVKSKR--SIWRISTITDFFWSIINFIGVFFATMFSMEKSDNYRKGSRSSKKW 58
M Y+ G V R S WR+S ITDFFW I F+ FF T+ + G S ++
Sbjct: 1 MVYISNGQVLDSRNQSPWRLSFITDFFWGIAEFVVFFFKTLLQQDVKKRRGYGGSSDSRY 60
Query: 59 DGGPGGPGSGP 69
D G G PG+ P
Sbjct: 61 DDGRGPPGNPP 71
>sp|Q2EN82|SELK_PIG Selenoprotein K OS=Sus scrofa GN=SELK PE=3 SV=3
Length = 94
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 1 MAYVERGVVKSKRSI--WRISTITDFFWSIINFIGVFFATMFSMEKSDNYRKGSRSSKKW 58
M Y+ G RS WR+S ITDFFW I F+ +FF T+ + G S ++
Sbjct: 1 MVYISNGQALDSRSQSPWRLSFITDFFWGIAEFVVLFFRTLLQQDVKKRRGYGGSSDSRY 60
Query: 59 DGGPGGPGSGP 69
D G G PG+ P
Sbjct: 61 DDGRGPPGNPP 71
>sp|Q641S4|SELK_XENLA Selenoprotein K OS=Xenopus laevis GN=selk PE=3 SV=3
Length = 95
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 1 MAYVERGVVK--SKRSIWRISTITDFFWSIINFIGVFFATMFSMEKSDNYRKGSRSSKKW 58
M Y+ G V RS WR+S +TD FW I +F+ +FF ++ + + S SS ++
Sbjct: 1 MVYISNGQVLDGQSRSPWRLSFLTDMFWGITDFVVMFFQSIIHPNVTRRGCQNSSSSTRY 60
Query: 59 DGGPGGPG 66
D G G PG
Sbjct: 61 DDGRGPPG 68
>sp|Q01H83|SELK_XENTR Selenoprotein K OS=Xenopus tropicalis GN=selk PE=3 SV=2
Length = 95
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 1 MAYVERGVVK--SKRSIWRISTITDFFWSIINFIGVFFATMFSMEKSDNYRKGSRSSKKW 58
M Y+ G V RS WR+S +TD FW I +FI +FF ++ + + S S ++
Sbjct: 1 MVYIANGQVLDGQSRSPWRLSFLTDMFWGITDFIVMFFQSIIHPNVTRRGCQNSSSRTRF 60
Query: 59 DGGPGGPGS 67
D G G PG+
Sbjct: 61 DDGRGPPGN 69
>sp|Q66I79|SELK_DANRE Selenoprotein K OS=Danio rerio GN=selk PE=3 SV=3
Length = 94
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 1 MAYVERGVV--KSKRSIWRISTITDFFWSIINFIGVFFATMFS--MEKSDNYRKGSRSSK 56
M YV G V RS W +S +TDFFW + FIG+FF T+ + K N SR S
Sbjct: 1 MVYVSNGQVLDSRSRSPWSLSFLTDFFWGAVEFIGLFFQTLVQPDLSKDGNNSASSRFSD 60
Query: 57 KWDGGPGGPG 66
G PG PG
Sbjct: 61 G-RGPPGFPG 69
>sp|Q55EX3|SELK_DICDI Selenoprotein K homolog OS=Dictyostelium discoideum GN=selk PE=3
SV=2
Length = 115
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 2 AYVERG-VVKSKRSIWRISTITDFFWSIINFIGVFFATMF 40
YV G V ++ RS WR+S I +F W I+N I FF+T+
Sbjct: 6 TYVSGGSVTQTGRSKWRLSYIPEFIWGILNQITFFFSTLI 45
>sp|A0MSJ1|CRA1B_DANRE Collagen alpha-1(XXVII) chain B OS=Danio rerio GN=col27a1b PE=2
SV=1
Length = 1658
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 29 INFIGVFFATMFSMEKSD---NYRKGSRSSKKWDGGPGGPG----SGPYGGGGPRGPSRG 81
+ F+G F + EK D + G K G PG PG SGP G GP G SRG
Sbjct: 795 VGFVGPFGEMGLAGEKGDRGETGQPGPPGEKGAMGHPGAPGERGLSGPAGAPGPHG-SRG 853
Query: 82 LDNVRGLNDVRG 93
L RG RG
Sbjct: 854 LSGTRGPKGTRG 865
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 51 GSRSSKKWDGGPGGPGSGPYGGGGPRGPSRGLDNVRGLNDVRG 93
G S GG GPG G GGP+GP R + N+ G+ + G
Sbjct: 468 GPSSRGPMTGGIQGPGPINMGAGGPQGP-RQVPNIAGVGNPGG 509
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.140 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,264,430
Number of Sequences: 539616
Number of extensions: 2304192
Number of successful extensions: 20858
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 302
Number of HSP's that attempted gapping in prelim test: 16106
Number of HSP's gapped (non-prelim): 4370
length of query: 108
length of database: 191,569,459
effective HSP length: 76
effective length of query: 32
effective length of database: 150,558,643
effective search space: 4817876576
effective search space used: 4817876576
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)