Query 033941
Match_columns 108
No_of_seqs 95 out of 104
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:02:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10961 DUF2763: Protein of u 100.0 8.6E-32 1.9E-36 185.3 11.0 88 2-103 1-90 (91)
2 PF10961 DUF2763: Protein of u 93.8 0.41 8.9E-06 32.9 6.8 24 21-45 25-48 (91)
3 PF06682 DUF1183: Protein of u 87.0 2.3 5E-05 35.3 6.3 14 23-36 158-171 (318)
4 PF00430 ATP-synt_B: ATP synth 69.6 4.5 9.8E-05 27.6 2.4 13 24-36 2-14 (132)
5 PRK06569 F0F1 ATP synthase sub 69.0 6.2 0.00014 29.6 3.2 17 20-36 9-25 (155)
6 PRK13461 F0F1 ATP synthase sub 65.8 6.9 0.00015 28.2 2.9 16 22-37 6-21 (159)
7 PRK08476 F0F1 ATP synthase sub 65.6 6.9 0.00015 28.1 2.8 16 22-37 8-23 (141)
8 PRK14471 F0F1 ATP synthase sub 63.3 7.9 0.00017 28.1 2.8 16 22-37 9-24 (164)
9 PRK13454 F0F1 ATP synthase sub 61.7 7.3 0.00016 29.2 2.4 18 20-37 30-47 (181)
10 PRK09173 F0F1 ATP synthase sub 61.6 7.8 0.00017 28.0 2.5 16 23-38 3-18 (159)
11 PRK09174 F0F1 ATP synthase sub 60.8 8.1 0.00017 29.7 2.5 24 14-37 45-69 (204)
12 PRK06568 F0F1 ATP synthase sub 60.4 9 0.00019 28.6 2.7 17 21-37 4-20 (154)
13 COG3524 KpsE Capsule polysacch 57.2 11 0.00024 32.0 2.9 33 11-44 9-41 (372)
14 PRK14475 F0F1 ATP synthase sub 57.0 11 0.00025 27.6 2.7 19 21-39 8-26 (167)
15 PRK05759 F0F1 ATP synthase sub 56.8 11 0.00024 26.8 2.5 16 22-37 5-20 (156)
16 COG4086 Predicted secreted pro 54.9 8.7 0.00019 31.9 1.9 22 16-37 277-298 (299)
17 PRK14473 F0F1 ATP synthase sub 54.2 13 0.00029 26.9 2.7 15 22-36 9-23 (164)
18 PRK08475 F0F1 ATP synthase sub 53.8 12 0.00026 27.7 2.4 15 22-36 23-37 (167)
19 PRK13460 F0F1 ATP synthase sub 53.1 13 0.00028 27.4 2.5 16 22-37 17-32 (173)
20 PRK13453 F0F1 ATP synthase sub 52.6 15 0.00031 27.2 2.7 15 23-37 20-34 (173)
21 PRK14472 F0F1 ATP synthase sub 52.1 16 0.00035 26.8 2.8 17 21-37 18-34 (175)
22 PF06682 DUF1183: Protein of u 45.1 1.1E+02 0.0023 25.6 6.8 12 24-35 163-174 (318)
23 TIGR03321 alt_F1F0_F0_B altern 44.9 22 0.00047 27.7 2.7 16 22-37 6-21 (246)
24 PRK15021 microcin C ABC transp 44.8 10 0.00022 31.4 0.9 34 12-45 9-42 (341)
25 PHA03048 IMV membrane protein; 43.8 33 0.00071 24.1 3.1 41 2-42 29-69 (93)
26 CHL00118 atpG ATP synthase CF0 42.0 25 0.00055 25.4 2.5 15 22-36 23-37 (156)
27 PF06459 RR_TM4-6: Ryanodine R 40.7 33 0.00072 27.9 3.2 28 18-45 173-200 (274)
28 PHA02680 ORF090 IMV phosphoryl 39.2 42 0.00091 23.5 3.1 29 13-41 42-70 (91)
29 PF15183 MRAP: Melanocortin-2 38.1 29 0.00062 24.2 2.1 23 18-40 36-58 (90)
30 PF06678 DUF1179: Protein of u 36.8 32 0.0007 24.5 2.3 12 25-36 4-15 (103)
31 PF10943 DUF2632: Protein of u 36.6 39 0.00084 26.4 2.9 19 20-38 108-126 (233)
32 PF02532 PsbI: Photosystem II 36.5 56 0.0012 19.2 2.9 17 30-46 14-30 (36)
33 PRK07352 F0F1 ATP synthase sub 36.2 30 0.00066 25.3 2.2 14 23-36 21-34 (174)
34 PF04805 Pox_E10: E10-like pro 35.6 15 0.00033 24.5 0.5 18 29-46 40-57 (70)
35 PF06124 DUF960: Staphylococca 32.6 14 0.00031 25.4 -0.1 24 3-31 3-26 (94)
36 COG1512 Beta-propeller domains 30.3 2.7E+02 0.0059 22.6 6.9 6 27-32 193-198 (271)
37 PRK14474 F0F1 ATP synthase sub 30.2 50 0.0011 26.0 2.7 14 23-36 7-20 (250)
38 PRK07353 F0F1 ATP synthase sub 30.1 49 0.0011 23.0 2.3 14 23-36 7-20 (140)
39 PHA02898 virion envelope prote 29.9 83 0.0018 22.0 3.4 30 13-42 41-70 (92)
40 PRK02655 psbI photosystem II r 29.7 45 0.00097 19.9 1.7 12 30-41 9-20 (38)
41 CHL00024 psbI photosystem II p 29.4 46 0.001 19.6 1.7 13 29-41 8-20 (36)
42 PRK14385 hypothetical protein; 28.2 1.5E+02 0.0033 20.8 4.5 28 19-46 4-31 (96)
43 PF02326 YMF19: Plant ATP synt 26.7 68 0.0015 21.6 2.5 18 19-36 7-24 (86)
44 MTH00169 ATP8 ATP synthase F0 26.5 84 0.0018 20.4 2.8 18 20-37 9-26 (67)
45 PRK06231 F0F1 ATP synthase sub 25.5 71 0.0015 24.4 2.7 15 23-37 50-64 (205)
46 COG5346 Predicted membrane pro 24.9 1.2E+02 0.0026 22.6 3.6 28 17-44 88-115 (136)
47 PRK13428 F0F1 ATP synthase sub 24.0 59 0.0013 27.7 2.2 15 23-37 3-17 (445)
48 PRK14380 hypothetical protein; 21.7 2.2E+02 0.0047 19.3 4.2 26 21-46 4-29 (81)
49 MTH00025 ATP8 ATP synthase F0 21.5 1.2E+02 0.0025 20.1 2.7 17 20-36 9-25 (70)
50 PHA03005 sulfhydryl oxidase; P 21.5 39 0.00084 23.8 0.5 18 29-46 65-82 (96)
51 PF07172 GRP: Glycine rich pro 21.5 2.8E+02 0.006 19.0 6.9 17 24-40 7-23 (95)
52 PHA01399 membrane protein P6 21.3 1.2E+02 0.0026 24.3 3.2 22 20-41 99-120 (242)
53 PF14992 TMCO5: TMCO5 family 20.9 87 0.0019 25.8 2.5 11 34-44 236-246 (280)
54 PF07127 Nodulin_late: Late no 20.3 1E+02 0.0022 18.7 2.1 22 20-41 3-24 (54)
55 PF13631 Cytochrom_B_N_2: Cyto 20.0 1.3E+02 0.0029 22.1 3.1 34 11-44 131-164 (168)
No 1
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=99.97 E-value=8.6e-32 Score=185.31 Aligned_cols=88 Identities=48% Similarity=0.844 Sum_probs=69.1
Q ss_pred cEEeCCeeee-cCCcchhHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 033941 2 AYVERGVVKS-KRSIWRISTITDFFWSIINFIGVFFATMFSMEKSDNYRKGSRSSKKWDGGPGGPGSGPYGGGGPRGPSR 80 (108)
Q Consensus 2 vYIs~G~V~~-~r~~W~ls~I~d~Fwgi~~fI~lFF~TLfsp~~~~~y~~~~~~~~r~~gG~GggGggg~GgGgg~Gg~~ 80 (108)
|||++|+|+| |++||+|++|+||||+||+||.|||||||+|+++++++++++++++|.++.|++++ ++
T Consensus 1 vYI~~G~V~e~~rspWrls~I~d~Fwgi~~fI~lFF~Tl~~p~~~~~~~~~~~~~~~~~~G~G~gg~-----------gg 69 (91)
T PF10961_consen 1 VYISNGQVLERKRSPWRLSRITDFFWGIINFIVLFFQTLFSPDSSRSGRKNSSSGSRWSGGGGGGGG-----------GG 69 (91)
T ss_pred CEeeCCEEeecCCCCccHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCcCCCCCCCCCCCCCCCCC-----------CC
Confidence 7999999999 89999999999999999999999999999999998877666667777664222111 11
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCC
Q 033941 81 GLDNVRGLNDVRGNDHSS-LPACG 103 (108)
Q Consensus 81 g~~~~R~~gri~~~~~~~-~p~~G 103 (108)
+.|+++++++....+ +||+|
T Consensus 70 ---Gg~~~G~~g~g~G~~~~p~~g 90 (91)
T PF10961_consen 70 ---GGRGMGGGGGGGGPSPPPMGG 90 (91)
T ss_pred ---CCCCCCCCCCCCCCCCCCCCC
Confidence 345778888888777 45444
No 2
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=93.80 E-value=0.41 Score=32.94 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcC
Q 033941 21 ITDFFWSIINFIGVFFATMFSMEKS 45 (108)
Q Consensus 21 I~d~Fwgi~~fI~lFF~TLfsp~~~ 45 (108)
+..++--|..|+.-+|+- ...+..
T Consensus 25 Fwgi~~fI~lFF~Tl~~p-~~~~~~ 48 (91)
T PF10961_consen 25 FWGIINFIVLFFQTLFSP-DSSRSG 48 (91)
T ss_pred HHHHHHHHHHHHHHHhCC-Cccccc
Confidence 444555566677777764 444444
No 3
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=86.95 E-value=2.3 Score=35.31 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 033941 23 DFFWSIINFIGVFF 36 (108)
Q Consensus 23 d~Fwgi~~fI~lFF 36 (108)
-|||.|+.+|..|+
T Consensus 158 ~lf~ii~l~vla~i 171 (318)
T PF06682_consen 158 WLFWIIFLLVLAFI 171 (318)
T ss_pred hhhhHHHHHHHHHH
Confidence 44555544444443
No 4
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=69.55 E-value=4.5 Score=27.58 Aligned_cols=13 Identities=54% Similarity=1.410 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHH
Q 033941 24 FFWSIINFIGVFF 36 (108)
Q Consensus 24 ~Fwgi~~fI~lFF 36 (108)
|||-+++|+.|||
T Consensus 2 l~~~~i~Flil~~ 14 (132)
T PF00430_consen 2 LFWQLINFLILFF 14 (132)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 7899999999888
No 5
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=69.04 E-value=6.2 Score=29.63 Aligned_cols=17 Identities=24% Similarity=0.657 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033941 20 TITDFFWSIINFIGVFF 36 (108)
Q Consensus 20 ~I~d~Fwgi~~fI~lFF 36 (108)
....+||-+++|+.|||
T Consensus 9 ~~sqifw~iI~FlILy~ 25 (155)
T PRK06569 9 YYSQIFWLIVTFGLLYI 25 (155)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 45689999999999887
No 6
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=65.84 E-value=6.9 Score=28.24 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 033941 22 TDFFWSIINFIGVFFA 37 (108)
Q Consensus 22 ~d~Fwgi~~fI~lFF~ 37 (108)
..|||.++||+.|||.
T Consensus 6 ~~~~~~~inF~il~~i 21 (159)
T PRK13461 6 PTIIATIINFIILLLI 21 (159)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4789999999999985
No 7
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=65.62 E-value=6.9 Score=28.15 Aligned_cols=16 Identities=6% Similarity=0.106 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 033941 22 TDFFWSIINFIGVFFA 37 (108)
Q Consensus 22 ~d~Fwgi~~fI~lFF~ 37 (108)
..|+|.+++|+.|||.
T Consensus 8 ~~~~~qli~Flil~~~ 23 (141)
T PRK08476 8 YLMLATFVVFLLLIVI 23 (141)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4689999999999884
No 8
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=63.28 E-value=7.9 Score=28.08 Aligned_cols=16 Identities=31% Similarity=0.700 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 033941 22 TDFFWSIINFIGVFFA 37 (108)
Q Consensus 22 ~d~Fwgi~~fI~lFF~ 37 (108)
..|||-+++|+.|||.
T Consensus 9 ~~~~~~~i~Flil~~l 24 (164)
T PRK14471 9 GLFFWQTILFLILLLL 24 (164)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4889999999999984
No 9
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=61.71 E-value=7.3 Score=29.15 Aligned_cols=18 Identities=17% Similarity=0.814 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033941 20 TITDFFWSIINFIGVFFA 37 (108)
Q Consensus 20 ~I~d~Fwgi~~fI~lFF~ 37 (108)
.+..+||-+++|+.|||.
T Consensus 30 ~~~q~~~~lI~F~iL~~l 47 (181)
T PRK13454 30 FPNQIFWLLVTLVAIYFV 47 (181)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 346899999999999884
No 10
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=61.61 E-value=7.8 Score=27.98 Aligned_cols=16 Identities=13% Similarity=0.492 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 033941 23 DFFWSIINFIGVFFAT 38 (108)
Q Consensus 23 d~Fwgi~~fI~lFF~T 38 (108)
++||.+++|+.+||.-
T Consensus 3 ~~~w~~i~f~i~l~~l 18 (159)
T PRK09173 3 ATFWAFVGLVLFLALV 18 (159)
T ss_pred chHHHHHHHHHHHHHH
Confidence 6899999998888753
No 11
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=60.77 E-value=8.1 Score=29.75 Aligned_cols=24 Identities=13% Similarity=0.325 Sum_probs=18.0
Q ss_pred CcchhH-HHHHHHHHHHHHHHHHHH
Q 033941 14 SIWRIS-TITDFFWSIINFIGVFFA 37 (108)
Q Consensus 14 ~~W~ls-~I~d~Fwgi~~fI~lFF~ 37 (108)
||.... ....|||-+++|+.|||.
T Consensus 45 p~~~~~~~~~~l~w~~I~FliL~~l 69 (204)
T PRK09174 45 PPFDSTHYASQLLWLAITFGLFYLF 69 (204)
T ss_pred CCCcchhccHHHHHHHHHHHHHHHH
Confidence 555543 345899999999999984
No 12
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=60.37 E-value=9 Score=28.58 Aligned_cols=17 Identities=18% Similarity=0.680 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033941 21 ITDFFWSIINFIGVFFA 37 (108)
Q Consensus 21 I~d~Fwgi~~fI~lFF~ 37 (108)
+-.+||-+++|+.|||.
T Consensus 4 ~~~~fwq~I~FlIll~l 20 (154)
T PRK06568 4 LDESFWLAVSFVIFVYL 20 (154)
T ss_pred hHhHHHHHHHHHHHHHH
Confidence 56899999999999984
No 13
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=57.15 E-value=11 Score=31.98 Aligned_cols=33 Identities=18% Similarity=0.505 Sum_probs=25.3
Q ss_pred ecCCcchhHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 033941 11 SKRSIWRISTITDFFWSIINFIGVFFATMFSMEK 44 (108)
Q Consensus 11 ~~r~~W~ls~I~d~Fwgi~~fI~lFF~TLfsp~~ 44 (108)
+|..-|++..+.-+||-++.|| +++-+||+-+-
T Consensus 9 ~k~kk~si~k~s~lfw~~vi~~-l~yf~l~asdr 41 (372)
T COG3524 9 KKPKKKSIKKLSPLFWVTVIII-LVYFGLFASDR 41 (372)
T ss_pred hcchhccHHhhhhHHHHHHHHH-HHHHHHhcccc
Confidence 3445688889999999999998 66667776544
No 14
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=56.98 E-value=11 Score=27.55 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033941 21 ITDFFWSIINFIGVFFATM 39 (108)
Q Consensus 21 I~d~Fwgi~~fI~lFF~TL 39 (108)
...+||-+++|+.+||.-+
T Consensus 8 ~~~~~w~~i~f~il~~iL~ 26 (167)
T PRK14475 8 SNPEFWVGAGLLIFFGILI 26 (167)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 4578999999999997553
No 15
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=56.82 E-value=11 Score=26.81 Aligned_cols=16 Identities=13% Similarity=0.274 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 033941 22 TDFFWSIINFIGVFFA 37 (108)
Q Consensus 22 ~d~Fwgi~~fI~lFF~ 37 (108)
..|||-+++|+.|||.
T Consensus 5 ~~~~~~~i~Flil~~i 20 (156)
T PRK05759 5 GTLIGQLIAFLILVWF 20 (156)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5789999999999884
No 16
>COG4086 Predicted secreted protein [Function unknown]
Probab=54.93 E-value=8.7 Score=31.90 Aligned_cols=22 Identities=32% Similarity=0.295 Sum_probs=19.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 033941 16 WRISTITDFFWSIINFIGVFFA 37 (108)
Q Consensus 16 W~ls~I~d~Fwgi~~fI~lFF~ 37 (108)
|-|++|.|||-.|||+|.=||+
T Consensus 277 ~il~~i~~f~ssi~nalvg~f~ 298 (299)
T COG4086 277 GILERIGDFLSSIWNALVGIFK 298 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 6678999999999999988885
No 17
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=54.22 E-value=13 Score=26.87 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHH
Q 033941 22 TDFFWSIINFIGVFF 36 (108)
Q Consensus 22 ~d~Fwgi~~fI~lFF 36 (108)
..|||.++||+.+||
T Consensus 9 ~~~~~~~inflil~~ 23 (164)
T PRK14473 9 GLLIAQLINFLLLIF 23 (164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 368999999999988
No 18
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=53.82 E-value=12 Score=27.65 Aligned_cols=15 Identities=27% Similarity=0.175 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHH
Q 033941 22 TDFFWSIINFIGVFF 36 (108)
Q Consensus 22 ~d~Fwgi~~fI~lFF 36 (108)
.++||.++||+.+++
T Consensus 23 ~~~~~~~inflil~~ 37 (167)
T PRK08475 23 YDIIERTINFLIFVG 37 (167)
T ss_pred hhHHHHHHHHHHHHH
Confidence 578999999999887
No 19
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=53.09 E-value=13 Score=27.35 Aligned_cols=16 Identities=19% Similarity=0.611 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 033941 22 TDFFWSIINFIGVFFA 37 (108)
Q Consensus 22 ~d~Fwgi~~fI~lFF~ 37 (108)
..|||.+++|+.++|.
T Consensus 17 ~~~~~~~i~Flil~~i 32 (173)
T PRK13460 17 GLVVWTLVTFLVVVLV 32 (173)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4789999999999884
No 20
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=52.61 E-value=15 Score=27.19 Aligned_cols=15 Identities=13% Similarity=0.321 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHH
Q 033941 23 DFFWSIINFIGVFFA 37 (108)
Q Consensus 23 d~Fwgi~~fI~lFF~ 37 (108)
.+||-++||+.|||.
T Consensus 20 t~~~~iInFliL~~l 34 (173)
T PRK13453 20 TVIVTVLTFIVLLAL 34 (173)
T ss_pred HHHHHHHHHHHHHHH
Confidence 579999999999883
No 21
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=52.05 E-value=16 Score=26.82 Aligned_cols=17 Identities=24% Similarity=0.608 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033941 21 ITDFFWSIINFIGVFFA 37 (108)
Q Consensus 21 I~d~Fwgi~~fI~lFF~ 37 (108)
...|||-+++|+.++|.
T Consensus 18 ~~~~~~~~i~Flil~~l 34 (175)
T PRK14472 18 PGLIFWTAVTFVIVLLI 34 (175)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34689999999999884
No 22
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=45.11 E-value=1.1e+02 Score=25.63 Aligned_cols=12 Identities=25% Similarity=0.407 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 033941 24 FFWSIINFIGVF 35 (108)
Q Consensus 24 ~Fwgi~~fI~lF 35 (108)
+|..|+.||++-
T Consensus 163 i~l~vla~ivY~ 174 (318)
T PF06682_consen 163 IFLLVLAFIVYS 174 (318)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 23
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=44.88 E-value=22 Score=27.66 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 033941 22 TDFFWSIINFIGVFFA 37 (108)
Q Consensus 22 ~d~Fwgi~~fI~lFF~ 37 (108)
..|||.++||+.+||.
T Consensus 6 ~t~~~qiInFlil~~l 21 (246)
T TIGR03321 6 FTVIAQLINFLILVWL 21 (246)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4689999999999883
No 24
>PRK15021 microcin C ABC transporter permease; Provisional
Probab=44.77 E-value=10 Score=31.40 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=28.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHhCCCcC
Q 033941 12 KRSIWRISTITDFFWSIINFIGVFFATMFSMEKS 45 (108)
Q Consensus 12 ~r~~W~ls~I~d~Fwgi~~fI~lFF~TLfsp~~~ 45 (108)
++-+||+++-..-+|+++.|+.+|+.+||++...
T Consensus 9 ~~~~~~f~~~~~~~~s~~~~~~l~~~~~~a~~~a 42 (341)
T PRK15021 9 QARWARFRHNRRGYWSLWIFLVLFGLSLCSELIA 42 (341)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHhhHHcc
Confidence 3446788888888999999999999999987665
No 25
>PHA03048 IMV membrane protein; Provisional
Probab=43.81 E-value=33 Score=24.09 Aligned_cols=41 Identities=24% Similarity=0.461 Sum_probs=30.7
Q ss_pred cEEeCCeeeecCCcchhHHHHHHHHHHHHHHHHHHHHHhCC
Q 033941 2 AYVERGVVKSKRSIWRISTITDFFWSIINFIGVFFATMFSM 42 (108)
Q Consensus 2 vYIs~G~V~~~r~~W~ls~I~d~Fwgi~~fI~lFF~TLfsp 42 (108)
+||+=.........||.-.|+-|+.+++..+++|+-++...
T Consensus 29 AfidfsK~k~~~~~wRalsii~FIlgivl~lG~~ifsmy~r 69 (93)
T PHA03048 29 AFVDFSKNKATVTVWRALSGIAFVLGIVMTIGMLIYSMWGR 69 (93)
T ss_pred hhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35542222333356998889999999999999999999973
No 26
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=42.01 E-value=25 Score=25.42 Aligned_cols=15 Identities=7% Similarity=0.186 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHH
Q 033941 22 TDFFWSIINFIGVFF 36 (108)
Q Consensus 22 ~d~Fwgi~~fI~lFF 36 (108)
.+|||-++||+.|+|
T Consensus 23 ~t~~~~~inFliL~~ 37 (156)
T CHL00118 23 ATLPLMALQFLLLMV 37 (156)
T ss_pred hHHHHHHHHHHHHHH
Confidence 478899999999888
No 27
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=40.74 E-value=33 Score=27.86 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcC
Q 033941 18 ISTITDFFWSIINFIGVFFATMFSMEKS 45 (108)
Q Consensus 18 ls~I~d~Fwgi~~fI~lFF~TLfsp~~~ 45 (108)
|+++.=|+-=+||||.||++---.+...
T Consensus 173 lr~lALflAFaINFILLFYKVs~~~~~~ 200 (274)
T PF06459_consen 173 LRFLALFLAFAINFILLFYKVSTSPPEE 200 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 3334333334589999999755444443
No 28
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=39.24 E-value=42 Score=23.45 Aligned_cols=29 Identities=24% Similarity=0.628 Sum_probs=26.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhC
Q 033941 13 RSIWRISTITDFFWSIINFIGVFFATMFS 41 (108)
Q Consensus 13 r~~W~ls~I~d~Fwgi~~fI~lFF~TLfs 41 (108)
..+||.-.|+-|+.+++..+++++-|+..
T Consensus 42 ~~~wRalSii~FIlG~vl~lGilifs~y~ 70 (91)
T PHA02680 42 DYVWRALSVTCFIVGAVLLLGLFVFSMYR 70 (91)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34699888999999999999999999987
No 29
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=38.15 E-value=29 Score=24.20 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 033941 18 ISTITDFFWSIINFIGVFFATMF 40 (108)
Q Consensus 18 ls~I~d~Fwgi~~fI~lFF~TLf 40 (108)
-|+++.|-.++..||.++|.-|.
T Consensus 36 ysIVI~FWv~LA~FV~~lF~iL~ 58 (90)
T PF15183_consen 36 YSIVIAFWVSLAAFVVFLFLILL 58 (90)
T ss_pred eeeehhHHHHHHHHHHHHHHHHH
Confidence 35788888889999988885444
No 30
>PF06678 DUF1179: Protein of unknown function (DUF1179); InterPro: IPR009564 This family consists of several hypothetical Caenorhabditis elegans proteins of around 106 residues in length. The function of the family is unknown.
Probab=36.82 E-value=32 Score=24.54 Aligned_cols=12 Identities=42% Similarity=0.711 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHH
Q 033941 25 FWSIINFIGVFF 36 (108)
Q Consensus 25 Fwgi~~fI~lFF 36 (108)
||-|+..|.||+
T Consensus 4 f~~i~~~i~l~g 15 (103)
T PF06678_consen 4 FWFILKSIFLFG 15 (103)
T ss_pred hHHHHHHHHHhh
Confidence 555555555533
No 31
>PF10943 DUF2632: Protein of unknown function (DUF2632); InterPro: IPR024251 This is a family of potential membrane proteins that may be components of the viral envelope.
Probab=36.62 E-value=39 Score=26.35 Aligned_cols=19 Identities=32% Similarity=0.672 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033941 20 TITDFFWSIINFIGVFFAT 38 (108)
Q Consensus 20 ~I~d~Fwgi~~fI~lFF~T 38 (108)
-++-+|..++||+.+|++|
T Consensus 108 mlimmfvkfinfvklfyrt 126 (233)
T PF10943_consen 108 MLIMMFVKFINFVKLFYRT 126 (233)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3455677778888888765
No 32
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=36.48 E-value=56 Score=19.23 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhCCCcCC
Q 033941 30 NFIGVFFATMFSMEKSD 46 (108)
Q Consensus 30 ~fI~lFF~TLfsp~~~~ 46 (108)
.||.||+--++|-|+++
T Consensus 14 ffv~LFifGflsnDp~R 30 (36)
T PF02532_consen 14 FFVSLFIFGFLSNDPGR 30 (36)
T ss_dssp HHHHHHHHHHHTTCTTS
T ss_pred HHHHHHhccccCCCCCC
Confidence 34444444555555543
No 33
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=36.16 E-value=30 Score=25.33 Aligned_cols=14 Identities=21% Similarity=-0.045 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHH
Q 033941 23 DFFWSIINFIGVFF 36 (108)
Q Consensus 23 d~Fwgi~~fI~lFF 36 (108)
.|+|.++||+.+||
T Consensus 21 ~~~~~iinflIl~~ 34 (174)
T PRK07352 21 LLETNLINLAIVIG 34 (174)
T ss_pred HHHHHHHHHHHHHH
Confidence 46788888888887
No 34
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=35.61 E-value=15 Score=24.48 Aligned_cols=18 Identities=44% Similarity=0.739 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhCCCcCC
Q 033941 29 INFIGVFFATMFSMEKSD 46 (108)
Q Consensus 29 ~~fI~lFF~TLfsp~~~~ 46 (108)
+|.|.+||.+||+-..++
T Consensus 40 iNyIy~FFI~lfNnla~d 57 (70)
T PF04805_consen 40 INYIYFFFISLFNNLASD 57 (70)
T ss_pred ccchHHHHHHHHHHhccC
Confidence 477888999999766654
No 35
>PF06124 DUF960: Staphylococcal protein of unknown function (DUF960); InterPro: IPR009303 This family consists of several hypothetical proteins from several species of bacteria. The function of this family is unknown.; PDB: 2R41_C.
Probab=32.61 E-value=14 Score=25.39 Aligned_cols=24 Identities=33% Similarity=0.738 Sum_probs=15.1
Q ss_pred EEeCCeeeecCCcchhHHHHHHHHHHHHH
Q 033941 3 YVERGVVKSKRSIWRISTITDFFWSIINF 31 (108)
Q Consensus 3 YIs~G~V~~~r~~W~ls~I~d~Fwgi~~f 31 (108)
|+|.|.+- +-| ..|.+.||.++.-
T Consensus 3 Y~T~Gi~~-~LP----~~lq~~~W~iID~ 26 (94)
T PF06124_consen 3 YATRGIAE-SLP----IELQDSFWQIIDN 26 (94)
T ss_dssp EEEHHHHT-TS-----HHHHHHHHHHHHH
T ss_pred ceeechhh-hCC----HHHHHHHHHHHHH
Confidence 66666443 334 3688999988853
No 36
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=30.29 E-value=2.7e+02 Score=22.61 Aligned_cols=6 Identities=33% Similarity=0.622 Sum_probs=2.2
Q ss_pred HHHHHH
Q 033941 27 SIINFI 32 (108)
Q Consensus 27 gi~~fI 32 (108)
.||.||
T Consensus 193 ~v~~~~ 198 (271)
T COG1512 193 AVWVFI 198 (271)
T ss_pred HHHHHH
Confidence 333333
No 37
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=30.20 E-value=50 Score=26.01 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHH
Q 033941 23 DFFWSIINFIGVFF 36 (108)
Q Consensus 23 d~Fwgi~~fI~lFF 36 (108)
.+||.++||+.|+|
T Consensus 7 t~~~qiInFlILv~ 20 (250)
T PRK14474 7 TVVAQIINFLILVY 20 (250)
T ss_pred HHHHHHHHHHHHHH
Confidence 57899999999888
No 38
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=30.08 E-value=49 Score=23.03 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHH
Q 033941 23 DFFWSIINFIGVFF 36 (108)
Q Consensus 23 d~Fwgi~~fI~lFF 36 (108)
-++|-+++|+.|+|
T Consensus 7 t~~~~~i~flil~~ 20 (140)
T PRK07353 7 TLPLMAVQFVLLTF 20 (140)
T ss_pred hHHHHHHHHHHHHH
Confidence 46788888888777
No 39
>PHA02898 virion envelope protein; Provisional
Probab=29.86 E-value=83 Score=22.03 Aligned_cols=30 Identities=30% Similarity=0.516 Sum_probs=26.2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhCC
Q 033941 13 RSIWRISTITDFFWSIINFIGVFFATMFSM 42 (108)
Q Consensus 13 r~~W~ls~I~d~Fwgi~~fI~lFF~TLfsp 42 (108)
..+||.-.|+-|+.+++..+++++-++...
T Consensus 41 ~~~wRalSii~FIlgivl~lG~~ifs~y~r 70 (92)
T PHA02898 41 DSALRSISIISFILAIILILGIIFFKGYNM 70 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346998889999999999999999998873
No 40
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=29.72 E-value=45 Score=19.85 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhC
Q 033941 30 NFIGVFFATMFS 41 (108)
Q Consensus 30 ~fI~lFF~TLfs 41 (108)
+.++.||.+||-
T Consensus 9 y~vV~ffvsLFi 20 (38)
T PRK02655 9 YIVVFFFVGLFV 20 (38)
T ss_pred hhhHHHHHHHHH
Confidence 344555555553
No 41
>CHL00024 psbI photosystem II protein I
Probab=29.40 E-value=46 Score=19.59 Aligned_cols=13 Identities=23% Similarity=0.667 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhC
Q 033941 29 INFIGVFFATMFS 41 (108)
Q Consensus 29 ~~fI~lFF~TLfs 41 (108)
++.++.||++||-
T Consensus 8 Vy~vV~ffvsLFi 20 (36)
T CHL00024 8 VYTVVIFFVSLFI 20 (36)
T ss_pred ehhHHHHHHHHHH
Confidence 3445556665553
No 42
>PRK14385 hypothetical protein; Provisional
Probab=28.18 E-value=1.5e+02 Score=20.75 Aligned_cols=28 Identities=11% Similarity=-0.019 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcCC
Q 033941 19 STITDFFWSIINFIGVFFATMFSMEKSD 46 (108)
Q Consensus 19 s~I~d~Fwgi~~fI~lFF~TLfsp~~~~ 46 (108)
+.|+-++-.++.++.-|+|..+||....
T Consensus 4 ~~~~~~~~~~~i~lI~~YQ~~iSPllg~ 31 (96)
T PRK14385 4 KKIFIILNLILILLIKIYQNTLSKIVGF 31 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4566677777888889999999999875
No 43
>PF02326 YMF19: Plant ATP synthase F0; InterPro: IPR003319 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 (or ymf19) found in the F0 complex of mitochondrial F-ATPases from plants and algae. This subunit is sometimes found in association and N-terminal to IPR009455 from INTERPRO, in higher plants. Subunit 8 differs in sequence between plants, Metazoa (IPR001421 from INTERPRO) and fungi (IPR009230 from INTERPRO) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=26.71 E-value=68 Score=21.57 Aligned_cols=18 Identities=22% Similarity=0.733 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033941 19 STITDFFWSIINFIGVFF 36 (108)
Q Consensus 19 s~I~d~Fwgi~~fI~lFF 36 (108)
..++.+||-++.|+.+|+
T Consensus 7 tf~sQ~fW~~i~f~~~y~ 24 (86)
T PF02326_consen 7 TFFSQYFWLLIFFFFFYI 24 (86)
T ss_pred eHHHHHHHHHHHHHHHHH
Confidence 368899999999988887
No 44
>MTH00169 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=26.54 E-value=84 Score=20.37 Aligned_cols=18 Identities=22% Similarity=0.606 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033941 20 TITDFFWSIINFIGVFFA 37 (108)
Q Consensus 20 ~I~d~Fwgi~~fI~lFF~ 37 (108)
.+..+||.++.|+.+|+.
T Consensus 9 f~sQ~~Wl~i~f~~ly~l 26 (67)
T MTH00169 9 YLTQYIWTLIILFFLFSL 26 (67)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578999999999988883
No 45
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=25.47 E-value=71 Score=24.42 Aligned_cols=15 Identities=20% Similarity=0.292 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHH
Q 033941 23 DFFWSIINFIGVFFA 37 (108)
Q Consensus 23 d~Fwgi~~fI~lFF~ 37 (108)
.|+|.++||+.++|.
T Consensus 50 ~~i~qlInFlIlv~l 64 (205)
T PRK06231 50 VFIAHLIAFSILLLL 64 (205)
T ss_pred HHHHHHHHHHHHHHH
Confidence 688999999988884
No 46
>COG5346 Predicted membrane protein [Function unknown]
Probab=24.91 E-value=1.2e+02 Score=22.60 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 033941 17 RISTITDFFWSIINFIGVFFATMFSMEK 44 (108)
Q Consensus 17 ~ls~I~d~Fwgi~~fI~lFF~TLfsp~~ 44 (108)
++++|.-++.+|.-.|..|+.||-+..-
T Consensus 88 ~~tril~liFgi~LVvsi~~~tla~~~~ 115 (136)
T COG5346 88 KLTRILLLIFGIFLVVSIFPKTLASLAG 115 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3568888888999999999999877554
No 47
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=24.04 E-value=59 Score=27.74 Aligned_cols=15 Identities=27% Similarity=0.518 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHH
Q 033941 23 DFFWSIINFIGVFFA 37 (108)
Q Consensus 23 d~Fwgi~~fI~lFF~ 37 (108)
.|||.|+||+.++|.
T Consensus 3 t~i~qlInFlIl~~l 17 (445)
T PRK13428 3 TFIGQLIGFAVIVFL 17 (445)
T ss_pred HHHHHHHHHHHHHHH
Confidence 579999999998884
No 48
>PRK14380 hypothetical protein; Provisional
Probab=21.70 E-value=2.2e+02 Score=19.32 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcCC
Q 033941 21 ITDFFWSIINFIGVFFATMFSMEKSD 46 (108)
Q Consensus 21 I~d~Fwgi~~fI~lFF~TLfsp~~~~ 46 (108)
|..++-.++.++.-|+|..+||....
T Consensus 4 ~~~m~~~~~i~~I~~Yq~~iSP~~~~ 29 (81)
T PRK14380 4 INLMLRQIVCLPIKMYQYFISPLITP 29 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 44466777788889999999998875
No 49
>MTH00025 ATP8 ATP synthase F0 subunit 8; Validated
Probab=21.50 E-value=1.2e+02 Score=20.08 Aligned_cols=17 Identities=24% Similarity=0.704 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033941 20 TITDFFWSIINFIGVFF 36 (108)
Q Consensus 20 ~I~d~Fwgi~~fI~lFF 36 (108)
.+..+||.++.|+.+||
T Consensus 9 f~nQi~W~~i~f~il~~ 25 (70)
T MTH00025 9 YLTQYRWTLIVLFLLLF 25 (70)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 56788999999998887
No 50
>PHA03005 sulfhydryl oxidase; Provisional
Probab=21.47 E-value=39 Score=23.83 Aligned_cols=18 Identities=39% Similarity=0.717 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhCCCcCC
Q 033941 29 INFIGVFFATMFSMEKSD 46 (108)
Q Consensus 29 ~~fI~lFF~TLfsp~~~~ 46 (108)
+|.|.+||.+||+-..++
T Consensus 65 iNyi~~FfI~l~Nnla~d 82 (96)
T PHA03005 65 LNYIYFFFISLFNNLASD 82 (96)
T ss_pred ccchhHHHHHHHHHhccC
Confidence 366778888888766654
No 51
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.47 E-value=2.8e+02 Score=18.98 Aligned_cols=17 Identities=0% Similarity=0.086 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 033941 24 FFWSIINFIGVFFATMF 40 (108)
Q Consensus 24 ~Fwgi~~fI~lFF~TLf 40 (108)
||..++..+.|++.+-.
T Consensus 7 llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 7 LLLGLLLAALLLISSEV 23 (95)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 45555555555554443
No 52
>PHA01399 membrane protein P6
Probab=21.27 E-value=1.2e+02 Score=24.30 Aligned_cols=22 Identities=14% Similarity=0.064 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC
Q 033941 20 TITDFFWSIINFIGVFFATMFS 41 (108)
Q Consensus 20 ~I~d~Fwgi~~fI~lFF~TLfs 41 (108)
.|.++|-.+|+-|..||++.+.
T Consensus 99 ~I~efI~AaWQaISSF~SSAWG 120 (242)
T PHA01399 99 WVTKTAGAAWQAISSFASAAWG 120 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777776654
No 53
>PF14992 TMCO5: TMCO5 family
Probab=20.95 E-value=87 Score=25.81 Aligned_cols=11 Identities=9% Similarity=0.449 Sum_probs=6.2
Q ss_pred HHHHHHhCCCc
Q 033941 34 VFFATMFSMEK 44 (108)
Q Consensus 34 lFF~TLfsp~~ 44 (108)
+||.++++|+.
T Consensus 236 ~f~~~fInpdl 246 (280)
T PF14992_consen 236 LFYIQFINPDL 246 (280)
T ss_pred HHHHhhcCcHH
Confidence 34566666654
No 54
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=20.26 E-value=1e+02 Score=18.68 Aligned_cols=22 Identities=23% Similarity=0.541 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC
Q 033941 20 TITDFFWSIINFIGVFFATMFS 41 (108)
Q Consensus 20 ~I~d~Fwgi~~fI~lFF~TLfs 41 (108)
.|.-|+..++.|+.||+++.-.
T Consensus 3 ~ilKFvY~mIiflslflv~~~~ 24 (54)
T PF07127_consen 3 KILKFVYAMIIFLSLFLVVTNV 24 (54)
T ss_pred cchhhHHHHHHHHHHHHhhccc
Confidence 3556777778888888765543
No 55
>PF13631 Cytochrom_B_N_2: Cytochrome b(N-terminal)/b6/petB; PDB: 1KB9_C 2IBZ_C 1P84_C 3CXH_C 1EZV_C 1KYO_C 3CX5_N 1PPJ_P 2A06_P 1SQX_C ....
Probab=20.03 E-value=1.3e+02 Score=22.10 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=25.7
Q ss_pred ecCCcchhHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 033941 11 SKRSIWRISTITDFFWSIINFIGVFFATMFSMEK 44 (108)
Q Consensus 11 ~~r~~W~ls~I~d~Fwgi~~fI~lFF~TLfsp~~ 44 (108)
++.|.|....+.|++--++.++.++...+|.|+.
T Consensus 131 ~~~pf~P~~~~kd~~~~~~~l~~~~~l~~~~P~~ 164 (168)
T PF13631_consen 131 DKIPFHPYFTLKDLFGFLLFLFLFILLAFFFPYP 164 (168)
T ss_dssp SEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSTTT
T ss_pred CceeccHhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 4567788788899877777767777788888875
Done!