Query 033941
Match_columns 108
No_of_seqs 95 out of 104
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 13:24:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pk2_A Cyclin-T1, protein TAT; 52.9 2.9 9.8E-05 33.2 0.0 14 23-36 232-245 (358)
2 1b9u_A Protein (ATP synthase); 46.0 16 0.00056 19.2 2.4 14 23-36 6-19 (34)
3 1bnx_A Protein (BAND 3); human 41.9 25 0.00084 19.4 2.8 21 13-40 2-22 (34)
4 3arc_I Photosystem II reaction 37.2 27 0.00094 19.9 2.5 19 28-46 12-30 (38)
5 2r41_A Uncharacterized protein 28.6 12 0.00042 25.8 0.0 25 3-32 15-39 (110)
6 4gyx_A Type III collagen fragm 21.3 1.1E+02 0.0036 16.4 3.6 6 103-108 25-30 (31)
7 2lug_A Myelin basic protein; i 17.1 89 0.0031 17.4 2.1 16 31-46 11-26 (36)
8 3g9r_A Fusion complex of HIV-1 12.2 1.5E+02 0.0053 17.0 2.3 21 14-34 7-27 (42)
9 1eys_H Photosynthetic reaction 10.6 2.2E+02 0.0075 22.0 3.4 19 20-38 14-32 (259)
10 2eqo_A TNF receptor-associated 9.9 1.5E+02 0.0051 21.1 2.0 16 12-29 35-50 (140)
No 1
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=52.92 E-value=2.9 Score=33.17 Aligned_cols=14 Identities=0% Similarity=-0.014 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 033941 23 DFFWSIINFIGVFF 36 (108)
Q Consensus 23 d~Fwgi~~fI~lFF 36 (108)
+.+..++.-|.-++
T Consensus 232 ~~l~~i~~~il~~y 245 (358)
T 2pk2_A 232 ELLDELTHEFLQIL 245 (358)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555554444
No 2
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=46.01 E-value=16 Score=19.25 Aligned_cols=14 Identities=14% Similarity=0.240 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHH
Q 033941 23 DFFWSIINFIGVFF 36 (108)
Q Consensus 23 d~Fwgi~~fI~lFF 36 (108)
+++|.+++|+.+++
T Consensus 6 ~l~~~~i~Flil~~ 19 (34)
T 1b9u_A 6 TILGQAIAFVLFVL 19 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 78999999998887
No 3
>1bnx_A Protein (BAND 3); human erythrocyte anion transporter, transmembrane, synthetic peptide, electron transport; NMR {Synthetic} SCOP: j.35.1.1
Probab=41.93 E-value=25 Score=19.43 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=14.9
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 033941 13 RSIWRISTITDFFWSIINFIGVFFATMF 40 (108)
Q Consensus 13 r~~W~ls~I~d~Fwgi~~fI~lFF~TLf 40 (108)
|-||-+|-++| .+-+||.+|+
T Consensus 2 R~p~Y~SD~~d-------~~fiyFa~l~ 22 (34)
T 1bnx_A 2 RYPYYLSDITD-------VIFIYFAALS 22 (34)
T ss_dssp CCSTTTHHHHH-------HHHHHHHHHH
T ss_pred CCcccHHHHHH-------HHHHHHHHHH
Confidence 44677777777 6677887765
No 4
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=37.18 E-value=27 Score=19.92 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhCCCcCC
Q 033941 28 IINFIGVFFATMFSMEKSD 46 (108)
Q Consensus 28 i~~fI~lFF~TLfsp~~~~ 46 (108)
++.||.||.--++|-|+++
T Consensus 12 V~ffvsLFiFGfLsnDP~R 30 (38)
T 3arc_I 12 VTFFVLLFVFGFLSGDPAR 30 (38)
T ss_dssp HHHHHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHHccccCCCCCC
Confidence 3445555555556666654
No 5
>2r41_A Uncharacterized protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics; 2.90A {Enterococcus faecalis}
Probab=28.60 E-value=12 Score=25.79 Aligned_cols=25 Identities=40% Similarity=0.634 Sum_probs=15.4
Q ss_pred EEeCCeeeecCCcchhHHHHHHHHHHHHHH
Q 033941 3 YVERGVVKSKRSIWRISTITDFFWSIINFI 32 (108)
Q Consensus 3 YIs~G~V~~~r~~W~ls~I~d~Fwgi~~fI 32 (108)
|+|.|.| ++-| -.|+|.||.|+.-.
T Consensus 15 YaS~Gv~-tsLP----~elid~~W~IID~~ 39 (110)
T 2r41_A 15 YASLGVV-SSLP----SGLIDSIWLIIDLN 39 (110)
T ss_dssp EEEHHHH-TTSC----HHHHHHHHHHHHHH
T ss_pred EEEeccc-ccCC----HHHHHHHHHHHHHH
Confidence 5555543 3434 26889999887643
No 6
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=21.34 E-value=1.1e+02 Score=16.41 Aligned_cols=6 Identities=83% Similarity=2.394 Sum_probs=2.9
Q ss_pred CCCCCC
Q 033941 103 GSCCGG 108 (108)
Q Consensus 103 G~ccg~ 108 (108)
|-||||
T Consensus 25 gpccgg 30 (31)
T 4gyx_A 25 GPCCGG 30 (31)
T ss_dssp CCCC--
T ss_pred CCCccC
Confidence 568886
No 7
>2lug_A Myelin basic protein; intrinsically disordered proteins, dodecylphosphocholine MIC myelin membrane, lipid binding protein; NMR {Mus musculus}
Probab=17.08 E-value=89 Score=17.40 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=12.9
Q ss_pred HHHHHHHHHhCCCcCC
Q 033941 31 FIGVFFATMFSMEKSD 46 (108)
Q Consensus 31 fI~lFF~TLfsp~~~~ 46 (108)
=++-||+.+++|-...
T Consensus 11 pvvhffknivsprtpp 26 (36)
T 2lug_A 11 PVVHFFKNIVTPRTPP 26 (36)
T ss_dssp HHHHHHHHHHCSSCCC
T ss_pred chhHhhhhccCCCCCC
Confidence 3678999999988764
No 8
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=12.17 E-value=1.5e+02 Score=16.98 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=17.2
Q ss_pred CcchhHHHHHHHHHHHHHHHH
Q 033941 14 SIWRISTITDFFWSIINFIGV 34 (108)
Q Consensus 14 ~~W~ls~I~d~Fwgi~~fI~l 34 (108)
+.|..-.|+..||.|-.||..
T Consensus 7 ~lWnWFdItkWlwyIKI~iMv 27 (42)
T 3g9r_A 7 SLWNWFNITNWLWYIKIEELK 27 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHH
Confidence 468888999999999877754
No 9
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=10.64 E-value=2.2e+02 Score=21.99 Aligned_cols=19 Identities=11% Similarity=0.198 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033941 20 TITDFFWSIINFIGVFFAT 38 (108)
Q Consensus 20 ~I~d~Fwgi~~fI~lFF~T 38 (108)
.++-.||.|+..+++|.|+
T Consensus 14 ~~~~~fw~ffa~li~yl~~ 32 (259)
T 1eys_H 14 ITIWAFWLFFFGLIIYLRR 32 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3445566666666655554
No 10
>2eqo_A TNF receptor-associated factor 3-interacting protein 1; STN_TRAF3IP1_ND domain, interleukin 13 receptor alpha 1-binding protein-1 [HOMO sapiens]; NMR {Homo sapiens}
Probab=9.89 E-value=1.5e+02 Score=21.10 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=0.0
Q ss_pred cCCcchhHHHHHHHHHHH
Q 033941 12 KRSIWRISTITDFFWSII 29 (108)
Q Consensus 12 ~r~~W~ls~I~d~Fwgi~ 29 (108)
+|||+| +|-|+|..++
T Consensus 35 ~kPPFR--FLhDIv~~v~ 50 (140)
T 2eqo_A 35 SKPPFR--YLHDIITEVI 50 (140)
T ss_dssp TSCCHH--HHHHHHHHHH
T ss_pred cCCCHH--HHHHHHHHHH
Done!