Query 033941
Match_columns 108
No_of_seqs 95 out of 104
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 13:24:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033941.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033941hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rzhh2 f.23.10.1 (H:11-35) Ph 71.8 2.7 0.0002 20.9 3.4 18 21-38 6-23 (26)
2 d2axti1 f.23.37.1 (I:1-35) Pho 37.1 16 0.0012 19.1 2.9 18 29-46 13-30 (35)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 21.9 48 0.0035 16.4 3.8 20 25-44 7-26 (30)
4 d1ppjc2 f.21.1.2 (C:15-260) Mi 16.5 49 0.0036 23.2 3.1 35 11-45 202-236 (246)
5 d1eysh2 f.23.10.1 (H:7-43) Pho 16.4 77 0.0056 16.5 3.4 17 21-37 9-25 (37)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 13.3 95 0.0069 16.1 3.1 12 22-33 15-26 (37)
7 d1nmla1 a.3.1.5 (A:1-166) Di-h 12.0 60 0.0044 21.3 2.3 18 25-42 149-166 (166)
8 d1lt7a_ c.1.26.1 (A:) Betaine- 11.8 29 0.0021 25.0 0.6 6 102-107 286-291 (361)
9 d1nw1a_ d.144.1.8 (A:) Choline 10.1 73 0.0053 22.4 2.4 18 15-34 347-364 (395)
10 d2i47a1 d.92.1.10 (A:220-473) 9.9 1.1E+02 0.0083 20.0 3.3 28 18-45 25-52 (254)
No 1
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=71.85 E-value=2.7 Score=20.94 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033941 21 ITDFFWSIINFIGVFFAT 38 (108)
Q Consensus 21 I~d~Fwgi~~fI~lFF~T 38 (108)
-+-+||.++..+.+|.||
T Consensus 6 aiw~fw~ffalli~ylqt 23 (26)
T d1rzhh2 6 AIYSFWIFLAGLIYYLQT 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 345688888888888887
No 2
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=37.12 E-value=16 Score=19.13 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhCCCcCC
Q 033941 29 INFIGVFFATMFSMEKSD 46 (108)
Q Consensus 29 ~~fI~lFF~TLfsp~~~~ 46 (108)
+.|+.+|.--++|-|+++
T Consensus 13 ~fFv~lFiFGFLSnDP~R 30 (35)
T d2axti1 13 TFFVLLFVFGFLSGDPAR 30 (35)
T ss_dssp HHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHhhccCCCCC
Confidence 344445555555656554
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=21.87 E-value=48 Score=16.41 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhCCCc
Q 033941 25 FWSIINFIGVFFATMFSMEK 44 (108)
Q Consensus 25 Fwgi~~fI~lFF~TLfsp~~ 44 (108)
...+.-.|.|||-.+|--++
T Consensus 7 v~ifac~i~lfffaiffrep 26 (30)
T d2axtt1 7 VFIFACIIALFFFAIFFREP 26 (30)
T ss_dssp HHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 34456677888877764443
No 4
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.55 E-value=49 Score=23.19 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=26.7
Q ss_pred ecCCcchhHHHHHHHHHHHHHHHHHHHHHhCCCcC
Q 033941 11 SKRSIWRISTITDFFWSIINFIGVFFATMFSMEKS 45 (108)
Q Consensus 11 ~~r~~W~ls~I~d~Fwgi~~fI~lFF~TLfsp~~~ 45 (108)
||-|=|....++|++.-++.++.+++.++|.|+.-
T Consensus 202 dkIpF~Pyf~~KDl~~~~~~l~~~~~~v~f~P~~l 236 (246)
T d1ppjc2 202 DKIPFHPYYTIKDILGALLLILALMLLVLFAPDLL 236 (246)
T ss_dssp SEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CEeEECchHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 34454555678999988888888888999998773
No 5
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=16.36 E-value=77 Score=16.51 Aligned_cols=17 Identities=12% Similarity=0.237 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033941 21 ITDFFWSIINFIGVFFA 37 (108)
Q Consensus 21 I~d~Fwgi~~fI~lFF~ 37 (108)
..-.||.++.-+..|.|
T Consensus 9 ~ly~Fw~FFagLi~YL~ 25 (37)
T d1eysh2 9 TIWAFWLFFFGLIIYLR 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44456655555555544
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.35 E-value=95 Score=16.05 Aligned_cols=12 Identities=8% Similarity=0.360 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHH
Q 033941 22 TDFFWSIINFIG 33 (108)
Q Consensus 22 ~d~Fwgi~~fI~ 33 (108)
+.++|+++..++
T Consensus 15 tsLy~GlLlifv 26 (37)
T d2axtl1 15 TSLYLGLLLILV 26 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 467888766554
No 7
>d1nmla1 a.3.1.5 (A:1-166) Di-heme cytochrome c peroxidase {Pseudomonas nautica [TaxId: 2743]}
Probab=11.99 E-value=60 Score=21.30 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhCC
Q 033941 25 FWSIINFIGVFFATMFSM 42 (108)
Q Consensus 25 Fwgi~~fI~lFF~TLfsp 42 (108)
+..|...|..|-+||++|
T Consensus 149 ~~~i~~Alaaf~rtlvsP 166 (166)
T d1nmla1 149 FDNMAVAIEAYEATLITP 166 (166)
T ss_dssp HHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHccCC
Confidence 356788999999999986
No 8
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.76 E-value=29 Score=25.00 Aligned_cols=6 Identities=67% Similarity=1.968 Sum_probs=5.0
Q ss_pred CCCCCC
Q 033941 102 CGSCCG 107 (108)
Q Consensus 102 ~G~ccg 107 (108)
-|||||
T Consensus 286 IGGCCG 291 (361)
T d1lt7a_ 286 IGGCCG 291 (361)
T ss_dssp ECCCTT
T ss_pred EEECCC
Confidence 489997
No 9
>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}
Probab=10.06 E-value=73 Score=22.42 Aligned_cols=18 Identities=22% Similarity=0.770 Sum_probs=13.5
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 033941 15 IWRISTITDFFWSIINFIGV 34 (108)
Q Consensus 15 ~W~ls~I~d~Fwgi~~fI~l 34 (108)
.|+ .+..|||++|.+|..
T Consensus 347 ~~~--~~s~l~W~lW~~iq~ 364 (395)
T d1nw1a_ 347 PFV--PVSHFFWGVWGLLQV 364 (395)
T ss_dssp GGH--HHHHHHHHHHHHHHH
T ss_pred HHH--HHhHHHHHHHHHHhh
Confidence 355 478899999988753
No 10
>d2i47a1 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, TACE, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.92 E-value=1.1e+02 Score=19.95 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcC
Q 033941 18 ISTITDFFWSIINFIGVFFATMFSMEKS 45 (108)
Q Consensus 18 ls~I~d~Fwgi~~fI~lFF~TLfsp~~~ 45 (108)
...|.+++..++|.|-+.|+.+..++..
T Consensus 25 ~~~i~~~i~~~~n~Vn~~Y~~~~~~~i~ 52 (254)
T d2i47a1 25 ESTTTNYLIELIDRVDDIYRNTAWDNAG 52 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcc
Done!