Query 033943
Match_columns 108
No_of_seqs 149 out of 1067
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 08:02:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 3.9E-47 8.4E-52 247.8 10.1 107 1-107 1-107 (148)
2 COG5078 Ubiquitin-protein liga 100.0 1.1E-46 2.3E-51 249.9 11.5 106 2-107 6-112 (153)
3 KOG0419 Ubiquitin-protein liga 100.0 1.1E-44 2.3E-49 231.5 9.5 106 2-107 5-110 (152)
4 PLN00172 ubiquitin conjugating 100.0 9E-44 2E-48 236.1 13.9 107 1-107 1-107 (147)
5 PTZ00390 ubiquitin-conjugating 100.0 5.6E-43 1.2E-47 233.4 13.7 106 2-107 3-108 (152)
6 KOG0421 Ubiquitin-protein liga 100.0 1.7E-39 3.7E-44 210.5 7.5 106 2-107 30-135 (175)
7 PF00179 UQ_con: Ubiquitin-con 100.0 1E-38 2.2E-43 210.0 9.4 103 5-107 1-105 (140)
8 cd00195 UBCc Ubiquitin-conjuga 100.0 5.4E-38 1.2E-42 206.8 11.8 105 3-107 1-106 (141)
9 KOG0418 Ubiquitin-protein liga 100.0 4.1E-38 8.8E-43 211.7 9.2 106 2-107 4-113 (200)
10 KOG0425 Ubiquitin-protein liga 100.0 9.4E-38 2E-42 204.6 10.7 105 2-106 6-124 (171)
11 KOG0424 Ubiquitin-protein liga 100.0 8.9E-38 1.9E-42 202.2 9.6 107 2-108 5-118 (158)
12 KOG0426 Ubiquitin-protein liga 100.0 2E-37 4.4E-42 198.4 9.4 106 1-106 4-123 (165)
13 smart00212 UBCc Ubiquitin-conj 100.0 3.5E-36 7.7E-41 199.0 12.2 104 4-107 1-106 (145)
14 KOG0427 Ubiquitin conjugating 100.0 2.9E-34 6.2E-39 183.7 11.5 104 2-106 16-120 (161)
15 KOG0422 Ubiquitin-protein liga 100.0 3.8E-32 8.1E-37 175.3 9.2 105 1-106 2-108 (153)
16 KOG0894 Ubiquitin-protein liga 100.0 8E-32 1.7E-36 184.7 11.3 103 2-106 6-111 (244)
17 KOG0420 Ubiquitin-protein liga 100.0 2.6E-30 5.7E-35 171.8 7.1 103 2-107 29-135 (184)
18 KOG0423 Ubiquitin-protein liga 100.0 1.2E-30 2.6E-35 174.0 4.9 105 3-107 12-116 (223)
19 KOG0416 Ubiquitin-protein liga 100.0 2.5E-29 5.4E-34 167.0 6.7 101 2-105 4-105 (189)
20 KOG0428 Non-canonical ubiquiti 99.9 1.1E-25 2.5E-30 157.3 10.0 102 2-106 12-116 (314)
21 KOG0895 Ubiquitin-conjugating 99.8 1.4E-20 3.1E-25 151.6 6.4 104 4-107 854-966 (1101)
22 KOG0429 Ubiquitin-conjugating 99.8 4.5E-18 9.7E-23 117.6 9.3 102 5-107 23-128 (258)
23 KOG0895 Ubiquitin-conjugating 99.8 5.1E-18 1.1E-22 137.0 10.4 105 3-107 284-399 (1101)
24 KOG0896 Ubiquitin-conjugating 99.5 4.3E-14 9.3E-19 91.1 7.5 105 3-107 7-118 (138)
25 KOG0897 Predicted ubiquitin-co 99.0 2.4E-10 5.1E-15 72.0 2.8 58 49-106 12-71 (122)
26 PF08694 UFC1: Ubiquitin-fold 99.0 2.5E-10 5.4E-15 74.6 2.7 95 3-103 26-135 (161)
27 PF14461 Prok-E2_B: Prokaryoti 98.8 1E-08 2.2E-13 67.0 5.3 62 46-107 34-101 (133)
28 KOG3357 Uncharacterized conser 98.5 2.3E-07 4.9E-12 60.1 5.0 95 3-103 29-138 (167)
29 PF05743 UEV: UEV domain; Int 98.5 8.9E-07 1.9E-11 57.0 6.7 73 30-107 32-112 (121)
30 KOG2391 Vacuolar sorting prote 97.4 0.0012 2.7E-08 49.1 7.6 66 38-104 56-129 (365)
31 PF05773 RWD: RWD domain; Int 97.3 0.0012 2.5E-08 40.9 6.5 69 4-73 4-74 (113)
32 smart00591 RWD domain in RING 96.9 0.01 2.2E-07 36.3 7.4 27 46-72 39-65 (107)
33 PF14462 Prok-E2_E: Prokaryoti 96.7 0.021 4.6E-07 36.8 7.9 88 19-107 12-116 (122)
34 PF14457 Prok-E2_A: Prokaryoti 96.4 0.0043 9.4E-08 41.9 3.4 56 52-107 57-121 (162)
35 PF09765 WD-3: WD-repeat regio 92.6 0.13 2.7E-06 37.9 2.9 81 4-107 102-183 (291)
36 KOG0309 Conserved WD40 repeat- 89.8 2.3 5E-05 35.5 7.6 67 5-72 424-491 (1081)
37 KOG4018 Uncharacterized conser 89.0 1.4 3.1E-05 31.0 5.3 61 7-70 8-71 (215)
38 smart00340 HALZ homeobox assoc 81.7 1.4 3.1E-05 23.1 1.9 14 3-16 21-34 (44)
39 cd00421 intradiol_dioxygenase 69.5 9.5 0.00021 25.0 3.8 24 47-70 65-89 (146)
40 cd03457 intradiol_dioxygenase_ 67.6 10 0.00023 26.1 3.8 25 47-71 86-110 (188)
41 KOG4445 Uncharacterized conser 66.2 8.3 0.00018 28.9 3.3 25 48-72 45-69 (368)
42 PF14460 Prok-E2_D: Prokaryoti 65.1 3.3 7.1E-05 28.1 1.0 14 76-89 98-111 (175)
43 cd03459 3,4-PCD Protocatechuat 62.4 16 0.00034 24.5 3.8 25 47-71 72-101 (158)
44 KOG0177 20S proteasome, regula 62.3 2.4 5.1E-05 29.5 -0.1 28 81-108 135-162 (200)
45 TIGR03737 PRTRC_B PRTRC system 59.6 5.2 0.00011 28.6 1.2 14 76-89 139-152 (228)
46 PF06113 BRE: Brain and reprod 58.3 17 0.00038 27.4 3.8 34 44-77 61-95 (333)
47 PF00845 Gemini_BL1: Geminivir 54.3 33 0.00071 25.0 4.5 48 29-76 101-156 (276)
48 cd05845 Ig2_L1-CAM_like Second 54.0 46 0.001 20.2 4.6 26 45-72 16-41 (95)
49 PF14135 DUF4302: Domain of un 54.0 52 0.0011 23.2 5.6 46 2-59 10-56 (235)
50 PF06113 BRE: Brain and reprod 53.5 25 0.00054 26.6 3.9 25 48-72 306-330 (333)
51 PF04881 Adeno_GP19K: Adenovir 52.9 15 0.00033 24.0 2.4 30 27-56 44-74 (139)
52 PF03366 YEATS: YEATS family; 52.5 49 0.0011 19.7 5.0 40 31-72 2-41 (84)
53 KOG1047 Bifunctional leukotrie 51.3 16 0.00036 29.5 2.8 29 43-72 248-279 (613)
54 TIGR02423 protocat_alph protoc 51.2 28 0.00061 24.1 3.7 24 47-70 96-124 (193)
55 cd03463 3,4-PCD_alpha Protocat 48.4 34 0.00074 23.6 3.8 23 48-70 93-120 (185)
56 PF12065 DUF3545: Protein of u 48.0 14 0.0003 20.8 1.4 13 3-15 36-48 (59)
57 KOG3285 Spindle assembly check 44.5 48 0.001 23.0 3.9 41 3-43 121-161 (203)
58 PRK15486 hpaC 4-hydroxyphenyla 42.4 17 0.00036 24.6 1.5 68 6-90 6-76 (170)
59 KOG1814 Predicted E3 ubiquitin 41.0 29 0.00062 27.1 2.7 21 50-70 76-97 (445)
60 PF13950 Epimerase_Csub: UDP-g 40.4 20 0.00044 20.0 1.4 15 91-105 36-50 (62)
61 TIGR02296 HpaC 4-hydroxyphenyl 37.1 19 0.0004 23.8 1.1 30 62-91 36-68 (154)
62 COG0544 Tig FKBP-type peptidyl 37.1 1E+02 0.0022 24.2 5.2 15 49-63 210-224 (441)
63 TIGR02439 catechol_proteo cate 34.8 68 0.0015 23.7 3.8 24 47-70 180-221 (285)
64 TIGR00628 ung uracil-DNA glyco 33.3 39 0.00085 23.8 2.2 37 29-68 49-87 (212)
65 cd03464 3,4-PCD_beta Protocate 33.0 79 0.0017 22.4 3.7 24 47-70 122-152 (220)
66 cd03461 1,2-HQD Hydroxyquinol 32.6 79 0.0017 23.3 3.8 24 47-70 172-213 (277)
67 PF00779 BTK: BTK motif; Inte 32.6 16 0.00035 17.9 0.2 15 73-87 2-17 (32)
68 COG4957 Predicted transcriptio 31.8 24 0.00053 23.3 0.9 17 50-66 104-120 (148)
69 TIGR02422 protocat_beta protoc 31.5 86 0.0019 22.3 3.7 24 47-70 117-147 (220)
70 COG2819 Predicted hydrolase of 31.2 91 0.002 22.8 3.9 30 42-71 15-46 (264)
71 cd03460 1,2-CTD Catechol 1,2 d 30.6 89 0.0019 23.1 3.8 24 47-70 176-217 (282)
72 TIGR03615 RutF pyrimidine util 29.6 31 0.00066 22.8 1.1 66 8-90 4-72 (156)
73 TIGR02438 catachol_actin catec 29.0 1E+02 0.0022 22.8 3.8 24 47-70 184-225 (281)
74 COG1853 Conserved protein/doma 28.7 43 0.00093 22.4 1.8 30 62-91 44-76 (176)
75 PHA03200 uracil DNA glycosylas 28.2 58 0.0013 23.7 2.4 36 30-68 82-118 (255)
76 TIGR01633 phi3626_gp14_N putat 27.6 1.5E+02 0.0033 18.1 6.2 57 3-60 64-122 (124)
77 TIGR02465 chlorocat_1_2 chloro 27.4 1.2E+02 0.0025 22.0 3.8 24 47-70 150-191 (246)
78 PF05709 Sipho_tail: Phage tai 27.3 2.1E+02 0.0045 19.5 5.5 58 4-63 55-115 (249)
79 KOG4274 Positive cofactor 2 (P 26.9 1.4E+02 0.003 24.7 4.4 48 6-64 624-675 (742)
80 KOG3696 Aspartyl beta-hydroxyl 26.7 68 0.0015 24.2 2.6 40 44-83 283-328 (334)
81 COG3866 PelB Pectate lyase [Ca 26.1 1.4E+02 0.003 22.6 4.1 40 31-70 197-239 (345)
82 PF15572 Imm26: Immunity prote 26.0 1.4E+02 0.003 18.5 3.5 25 41-70 8-32 (96)
83 PF09606 Med15: ARC105 or Med1 25.9 23 0.00049 29.9 0.0 23 50-72 716-738 (799)
84 PRK00907 hypothetical protein; 25.2 29 0.00063 21.2 0.4 11 53-63 11-21 (92)
85 PF11745 DUF3304: Protein of u 24.6 43 0.00094 21.1 1.1 19 81-99 50-68 (118)
86 PF12627 PolyA_pol_RNAbd: Prob 24.5 69 0.0015 17.3 1.9 17 2-18 23-39 (64)
87 PF04314 DUF461: Protein of un 23.9 1E+02 0.0022 19.0 2.7 26 33-58 78-103 (110)
88 PF09458 H_lectin: H-type lect 22.9 1.3E+02 0.0029 16.6 2.9 20 50-70 3-22 (72)
89 PF14909 SPATA6: Spermatogenes 21.9 2.5E+02 0.0054 18.6 5.5 52 19-72 85-137 (140)
90 PHA03199 uracil DNA glycosylas 21.9 69 0.0015 24.0 1.8 35 30-67 137-173 (304)
91 KOG0700 Protein phosphatase 2C 21.7 1.9E+02 0.0042 22.4 4.2 71 6-83 250-331 (390)
92 PF12259 DUF3609: Protein of u 21.7 69 0.0015 24.4 1.9 22 2-23 33-54 (361)
93 cd03458 Catechol_intradiol_dio 21.4 1.7E+02 0.0037 21.3 3.8 24 47-70 156-197 (256)
94 PF11819 DUF3338: Domain of un 21.0 52 0.0011 21.7 1.0 14 55-68 68-85 (138)
95 PHA03204 uracil DNA glycosylas 20.4 1.4E+02 0.0031 22.5 3.3 16 30-47 151-166 (322)
96 PF02970 TBCA: Tubulin binding 20.3 94 0.002 18.7 2.0 14 2-15 8-21 (90)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-47 Score=247.85 Aligned_cols=107 Identities=73% Similarity=1.330 Sum_probs=105.3
Q ss_pred ChHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecCccceeeC
Q 033943 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (108)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (108)
+|.+||.||++++++++++||++.++++|+++|+++|.||.+||||||.|++.|.||++||++||+|+|.|+||||||+.
T Consensus 1 ~a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~ 80 (148)
T KOG0417|consen 1 MASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS 80 (148)
T ss_pred CcHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCCCCcCcHHHHHhhhh
Q 033943 81 NGSICLDILKEQWSPALTISKMTLWCQ 107 (108)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~iq 107 (108)
.|.||+|+|+++|+|+++|+++|++||
T Consensus 81 ~G~IclDILk~~WsPAl~i~~VllsI~ 107 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLLSIC 107 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHHHHH
Confidence 999999999999999999999999997
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-46 Score=249.89 Aligned_cols=106 Identities=61% Similarity=1.218 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEeecCC-CcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecCccceeeC
Q 033943 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (108)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~-n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (108)
|.+||++|++.|++++++++++.+.++ |+++|+++|.||++||||||.|++.|.||++||++||+|+|.++||||||+.
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~ 85 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP 85 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC
Confidence 789999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCCCCcCcHHHHHhhhh
Q 033943 81 NGSICLDILKEQWSPALTISKMTLWCQ 107 (108)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~iq 107 (108)
+|.||+|+|+++|+|+++|++||++||
T Consensus 86 ~G~vCLdIL~~~WsP~~~l~sILlsl~ 112 (153)
T COG5078 86 SGNVCLDILKDRWSPVYTLETILLSLQ 112 (153)
T ss_pred CCCChhHHHhCCCCccccHHHHHHHHH
Confidence 999999999999999999999999998
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-44 Score=231.52 Aligned_cols=106 Identities=44% Similarity=0.983 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecCccceeeCC
Q 033943 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (108)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (108)
|.+||+||++.++++++.||++.|.++|++.|.++|.||.+|||+||+|++.+.|+++||..||.|+|.+.+||||||++
T Consensus 5 ArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~ 84 (152)
T KOG0419|consen 5 ARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYAD 84 (152)
T ss_pred HHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCCCCcCcHHHHHhhhh
Q 033943 82 GSICLDILKEQWSPALTISKMTLWCQ 107 (108)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~iq 107 (108)
|.+|+|+|+.+|+|+|++.+||++||
T Consensus 85 G~iClDiLqNrWsp~Ydva~ILtsiQ 110 (152)
T KOG0419|consen 85 GSICLDILQNRWSPTYDVASILTSIQ 110 (152)
T ss_pred CcchHHHHhcCCCCchhHHHHHHHHH
Confidence 99999999999999999999999998
No 4
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=9e-44 Score=236.12 Aligned_cols=107 Identities=72% Similarity=1.296 Sum_probs=105.3
Q ss_pred ChHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecCccceeeC
Q 033943 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (108)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (108)
||.+||+||++++++++++++++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+.
T Consensus 1 ma~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~ 80 (147)
T PLN00172 1 MATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS 80 (147)
T ss_pred ChHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCCCCcCcHHHHHhhhh
Q 033943 81 NGSICLDILKEQWSPALTISKMTLWCQ 107 (108)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~iq 107 (108)
+|.||+++|.++|+|++||++||++||
T Consensus 81 ~G~iCl~il~~~W~p~~ti~~il~~i~ 107 (147)
T PLN00172 81 NGSICLDILRDQWSPALTVSKVLLSIS 107 (147)
T ss_pred CCEEEcccCcCCCCCcCcHHHHHHHHH
Confidence 999999999999999999999999997
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=5.6e-43 Score=233.40 Aligned_cols=106 Identities=46% Similarity=0.879 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecCccceeeCC
Q 033943 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (108)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (108)
|+|||+||++++++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCCCCcCcHHHHHhhhh
Q 033943 82 GSICLDILKEQWSPALTISKMTLWCQ 107 (108)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~iq 107 (108)
|.||+|+|.++|+|++|+++||++||
T Consensus 83 G~iCl~iL~~~W~p~~ti~~iL~~i~ 108 (152)
T PTZ00390 83 GRICLDILKDKWSPALQIRTVLLSIQ 108 (152)
T ss_pred CeEECccCcccCCCCCcHHHHHHHHH
Confidence 99999999999999999999999997
No 6
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-39 Score=210.49 Aligned_cols=106 Identities=42% Similarity=0.810 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecCccceeeCC
Q 033943 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (108)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (108)
..|||++|+..|+....+||++.|+++|++.|.++|.||.+|+|+|..|++.+.||.+||+.||+|+|.|+.|||||+..
T Consensus 30 V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~ 109 (175)
T KOG0421|consen 30 VTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLS 109 (175)
T ss_pred HHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcccc
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCCCCcCcHHHHHhhhh
Q 033943 82 GSICLDILKEQWSPALTISKMTLWCQ 107 (108)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~iq 107 (108)
|.||+|+|.+.|+..|.+++||++||
T Consensus 110 GnIcLDILkdKWSa~YdVrTILLSiQ 135 (175)
T KOG0421|consen 110 GNICLDILKDKWSAVYDVRTILLSIQ 135 (175)
T ss_pred ccchHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999998
No 7
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=1e-38 Score=210.03 Aligned_cols=103 Identities=56% Similarity=1.128 Sum_probs=94.9
Q ss_pred HHHHHHHHHhcCCCCCeEEeecCC-CcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecCccceeeCCCe
Q 033943 5 RILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83 (108)
Q Consensus 5 RL~~E~~~l~~~~~~~i~~~~~~~-n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~ 83 (108)
||++|+++++++++.|+.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999887 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCC-CCCCcCcHHHHHhhhh
Q 033943 84 ICLDILKE-QWSPALTISKMTLWCQ 107 (108)
Q Consensus 84 icl~~l~~-~W~p~~~i~~il~~iq 107 (108)
||+++|.. .|+|+++|.+||++|+
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~ 105 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQ 105 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHH
T ss_pred chhhhhhcccCCcccccccHHHHHH
Confidence 99999985 5999999999999987
No 8
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=5.4e-38 Score=206.82 Aligned_cols=105 Identities=60% Similarity=1.145 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecCccceeeCCC
Q 033943 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (108)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 82 (108)
.|||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|++++.||++||++||+|+|.++++||||+.+|
T Consensus 1 ~~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G 80 (141)
T cd00195 1 SKRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENG 80 (141)
T ss_pred CchHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCC-CCCcCcHHHHHhhhh
Q 033943 83 SICLDILKEQ-WSPALTISKMTLWCQ 107 (108)
Q Consensus 83 ~icl~~l~~~-W~p~~~i~~il~~iq 107 (108)
.||++++... |+|++++++||.+|+
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~ 106 (141)
T cd00195 81 KICLSILKTHGWSPAYTLRTVLLSLQ 106 (141)
T ss_pred CCchhhcCCCCcCCcCcHHHHHHHHH
Confidence 9999999877 999999999999987
No 9
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-38 Score=211.68 Aligned_cols=106 Identities=46% Similarity=0.860 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHhcCC---CCCeEEeecCCCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecCcccee
Q 033943 2 ASKRILKELKDLQKDP---PTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNI 78 (108)
Q Consensus 2 a~~RL~~E~~~l~~~~---~~~i~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv 78 (108)
|.+|+++|.+++.+++ ..+|.++..++|+.+..+.|.||++||||||.|.+.|.+|++|||+||+|+|.|+||||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV 83 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV 83 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence 5799999999999997 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred e-CCCeEEecCCCCCCCCcCcHHHHHhhhh
Q 033943 79 N-SNGSICLDILKEQWSPALTISKMTLWCQ 107 (108)
Q Consensus 79 ~-~~G~icl~~l~~~W~p~~~i~~il~~iq 107 (108)
+ .+|.||+|+|.+.|++++|++++|++||
T Consensus 84 Ss~tGaICLDilkd~Wa~slTlrtvLislQ 113 (200)
T KOG0418|consen 84 SSQTGAICLDILKDQWAASLTLRTVLISLQ 113 (200)
T ss_pred CcccccchhhhhhcccchhhhHHHHHHHHH
Confidence 8 5999999999999999999999999998
No 10
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-38 Score=204.63 Aligned_cols=105 Identities=43% Similarity=0.938 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEeecCC-CcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecCccceeeC
Q 033943 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (108)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~-n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~ 80 (108)
|..-|+++|++|++++.+|+++...++ |+++|.|.|.||++|.|+||.|+..+.||.+||.+||+++|+++++|||||.
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~ 85 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE 85 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC
Confidence 456789999999999999999987765 8999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCC-------------CCCCCcCcHHHHHhhh
Q 033943 81 NGSICLDILK-------------EQWSPALTISKMTLWC 106 (108)
Q Consensus 81 ~G~icl~~l~-------------~~W~p~~~i~~il~~i 106 (108)
+|.+|+++|. ++|+|..|+++||++|
T Consensus 86 ~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSi 124 (171)
T KOG0425|consen 86 DGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSI 124 (171)
T ss_pred CCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHH
Confidence 9999999993 5699999999999987
No 11
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-38 Score=202.19 Aligned_cols=107 Identities=39% Similarity=0.840 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEeecC-----CCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecCccc
Q 033943 2 ASKRILKELKDLQKDPPTSCSAGPVA-----EDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHP 76 (108)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~-----~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i~Hp 76 (108)
|..||+.|-+.+.++.+-|+++.|.. .|++.|.+.|.|+++|+||||.|.+++.||++||.+||+++|.++.|||
T Consensus 5 ~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HP 84 (158)
T KOG0424|consen 5 ALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHP 84 (158)
T ss_pred HHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCC
Confidence 68899999999999999999998875 3799999999999999999999999999999999999999999999999
Q ss_pred eeeCCCeEEecCCCCC--CCCcCcHHHHHhhhhC
Q 033943 77 NINSNGSICLDILKEQ--WSPALTISKMTLWCQK 108 (108)
Q Consensus 77 nv~~~G~icl~~l~~~--W~p~~~i~~il~~iq~ 108 (108)
|||++|.|||++|.++ |+|+.||.+||++||+
T Consensus 85 NVypsgtVcLsiL~e~~~W~paitikqiL~gIqd 118 (158)
T KOG0424|consen 85 NVYPSGTVCLSILNEEKDWRPAITIKQILLGIQD 118 (158)
T ss_pred CcCCCCcEehhhhccccCCCchhhHHHHHHHHHH
Confidence 9999999999999866 9999999999999995
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-37 Score=198.40 Aligned_cols=106 Identities=42% Similarity=0.937 Sum_probs=100.8
Q ss_pred ChHHHHHHHHHHHhcCCCCCeEEeecC-CCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecCccceee
Q 033943 1 MASKRILKELKDLQKDPPTSCSAGPVA-EDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (108)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~~~~~~-~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~ 79 (108)
+|+|||++||++|-.++++||.+.|.+ +|+++|.+.|.||++|+|+||.|..++.||.|||.+||+++|...+|||||+
T Consensus 4 ~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy 83 (165)
T KOG0426|consen 4 TALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIY 83 (165)
T ss_pred hHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCccc
Confidence 589999999999999999999998865 6799999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEecCCC-------------CCCCCcCcHHHHHhhh
Q 033943 80 SNGSICLDILK-------------EQWSPALTISKMTLWC 106 (108)
Q Consensus 80 ~~G~icl~~l~-------------~~W~p~~~i~~il~~i 106 (108)
++|++|+++|. ++|+|..+++.||+++
T Consensus 84 ~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV 123 (165)
T KOG0426|consen 84 PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSV 123 (165)
T ss_pred CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHH
Confidence 99999999992 5799999999999875
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=3.5e-36 Score=198.99 Aligned_cols=104 Identities=62% Similarity=1.178 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhcCCCCCeEEeecCC-CcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecCccceeeCCC
Q 033943 4 KRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (108)
Q Consensus 4 ~RL~~E~~~l~~~~~~~i~~~~~~~-n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 82 (108)
+||++|++++++++++|+.+.+.++ |++.|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+.+|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999988775 999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCC-CCCCCcCcHHHHHhhhh
Q 033943 83 SICLDILK-EQWSPALTISKMTLWCQ 107 (108)
Q Consensus 83 ~icl~~l~-~~W~p~~~i~~il~~iq 107 (108)
.+|++++. ++|+|++++++||.+|+
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~ 106 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQ 106 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHH
Confidence 99999998 89999999999999986
No 14
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-34 Score=183.67 Aligned_cols=104 Identities=38% Similarity=0.799 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecC-ccceeeC
Q 033943 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKV-FHPNINS 80 (108)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i-~Hpnv~~ 80 (108)
|++||+||+.+++.+++.|+... ..+|+..|.+.+.|.+||.|+|.+|.++++||+.||++.|.|.|..++ .||+||.
T Consensus 16 at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYS 94 (161)
T KOG0427|consen 16 ATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYS 94 (161)
T ss_pred HHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceec
Confidence 78999999999999999999987 788999999999999999999999999999999999999999999876 7999999
Q ss_pred CCeEEecCCCCCCCCcCcHHHHHhhh
Q 033943 81 NGSICLDILKEQWSPALTISKMTLWC 106 (108)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~i 106 (108)
+|.||+|+|.++|+|++++.+|.++|
T Consensus 95 NGHICL~iL~d~WsPAmsv~SvClSI 120 (161)
T KOG0427|consen 95 NGHICLDILYDSWSPAMSVQSVCLSI 120 (161)
T ss_pred CCeEEEEeecccCCcchhhHHHHHHH
Confidence 99999999999999999999999887
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.8e-32 Score=175.25 Aligned_cols=105 Identities=37% Similarity=0.802 Sum_probs=96.8
Q ss_pred ChHHHHHHHHHHHhcCCCCCeE-EeecCCCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecCccceee
Q 033943 1 MASKRILKELKDLQKDPPTSCS-AGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (108)
Q Consensus 1 ~a~~RL~~E~~~l~~~~~~~i~-~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~ 79 (108)
+|.+||+||+.+|++++...+. +...++|++.|++.|. |++-||..|.|+++|.||.+|||.||.|.|.|+||||||+
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 4889999999999999877554 4567889999999999 8999999999999999999999999999999999999999
Q ss_pred CCCeEEecCC-CCCCCCcCcHHHHHhhh
Q 033943 80 SNGSICLDIL-KEQWSPALTISKMTLWC 106 (108)
Q Consensus 80 ~~G~icl~~l-~~~W~p~~~i~~il~~i 106 (108)
+.|.+|+.++ .++|.|+.+.+++|+.+
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaL 108 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQAL 108 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHH
Confidence 9999999988 58899999999998765
No 16
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=8e-32 Score=184.73 Aligned_cols=103 Identities=35% Similarity=0.741 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecCccceeeCC
Q 033943 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (108)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (108)
|.|||+|||+.|.++|.++|.+.|.++|+.+||.+|.||++|||+||.|+.++.||.+||++||.|+++|+ +..+-.+
T Consensus 6 a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--NGRFktn 83 (244)
T KOG0894|consen 6 AVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--NGRFKTN 83 (244)
T ss_pred HHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC--CCceecC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998 4666778
Q ss_pred CeEEecCC---CCCCCCcCcHHHHHhhh
Q 033943 82 GSICLDIL---KEQWSPALTISKMTLWC 106 (108)
Q Consensus 82 G~icl~~l---~~~W~p~~~i~~il~~i 106 (108)
-++|+++. .+.|+|.++|++||.++
T Consensus 84 tRLCLSiSDfHPdsWNP~WsVStILtGL 111 (244)
T KOG0894|consen 84 TRLCLSISDFHPDSWNPGWSVSTILTGL 111 (244)
T ss_pred ceEEEeccccCcCcCCCcccHHHHHHHH
Confidence 89999776 58899999999999875
No 17
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.6e-30 Score=171.81 Aligned_cols=103 Identities=38% Similarity=0.768 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHhcCCCCCeEE----eecCCCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecCccce
Q 033943 2 ASKRILKELKDLQKDPPTSCSA----GPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPN 77 (108)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~----~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i~Hpn 77 (108)
|.-||++|..++ +.+++++. ++.+.+..+.+++|. |+++.|+||.|.|.+.+|+.||++||+|.|.|++||||
T Consensus 29 a~lrl~~di~el--nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPN 105 (184)
T KOG0420|consen 29 ALLRLKKDILEL--NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPN 105 (184)
T ss_pred HHHHHHhhhhhc--cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCC
Confidence 566777777766 44555553 233333445999998 99999999999999999999999999999999999999
Q ss_pred eeCCCeEEecCCCCCCCCcCcHHHHHhhhh
Q 033943 78 INSNGSICLDILKEQWSPALTISKMTLWCQ 107 (108)
Q Consensus 78 v~~~G~icl~~l~~~W~p~~~i~~il~~iq 107 (108)
|+.+|.||+++|+++|+|+.++.+|+.++|
T Consensus 106 Id~~GnVCLnILRedW~P~lnL~sIi~GL~ 135 (184)
T KOG0420|consen 106 IDLDGNVCLNILREDWRPVLNLNSIIYGLQ 135 (184)
T ss_pred cCCcchHHHHHHHhcCccccchHHHHHHHH
Confidence 999999999999999999999999998876
No 18
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-30 Score=173.98 Aligned_cols=105 Identities=41% Similarity=0.764 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecCccceeeCCC
Q 033943 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (108)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 82 (108)
+|.|.+|++.+...|++||.|.++++|+....+.|-||.+|||++|.|+..+.+..|||.+||+-+|+|+||||||-.+|
T Consensus 12 ik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNG 91 (223)
T KOG0423|consen 12 IKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANG 91 (223)
T ss_pred HHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCCCCcCcHHHHHhhhh
Q 033943 83 SICLDILKEQWSPALTISKMTLWCQ 107 (108)
Q Consensus 83 ~icl~~l~~~W~p~~~i~~il~~iq 107 (108)
.||++.|..+|+|..+|++||+.|+
T Consensus 92 EICVNtLKkDW~p~LGirHvLltik 116 (223)
T KOG0423|consen 92 EICVNTLKKDWNPSLGIRHVLLTIK 116 (223)
T ss_pred eehhhhhhcccCcccchhhHhhhhh
Confidence 9999999999999999999999875
No 19
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.5e-29 Score=166.95 Aligned_cols=101 Identities=35% Similarity=0.771 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecCccceee-C
Q 033943 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-S 80 (108)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~-~ 80 (108)
+.||+-.|+..|.. .+..|...++++.+++|.+.||.+|||+||.+++++.+|++||++.|.|.|.++||||||+ .
T Consensus 4 ~~rRid~Dv~KL~~---s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLM---SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred cccchhhHHHHHHh---cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 56899999888876 3456777888999999999999999999999999999999999999999999999999999 5
Q ss_pred CCeEEecCCCCCCCCcCcHHHHHhh
Q 033943 81 NGSICLDILKEQWSPALTISKMTLW 105 (108)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~ 105 (108)
+|.||+|.+++.|+|.|.+.-|+..
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfet 105 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFET 105 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHHH
Confidence 9999999999999999998777643
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.1e-25 Score=157.31 Aligned_cols=102 Identities=38% Similarity=0.787 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecCccceeeCC
Q 033943 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (108)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 81 (108)
|.|||++|.++|+ +|.+...+.|.++|+++|+++|+||.+|-|+||.||.+|.||.+||++||.+..+|+ +..+..+
T Consensus 12 aVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRFE~n 88 (314)
T KOG0428|consen 12 AVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRFEVN 88 (314)
T ss_pred HHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCceeeC
Confidence 7899999999998 888888899999999999999999999999999999999999999999999999987 4667778
Q ss_pred CeEEecCCC---CCCCCcCcHHHHHhhh
Q 033943 82 GSICLDILK---EQWSPALTISKMTLWC 106 (108)
Q Consensus 82 G~icl~~l~---~~W~p~~~i~~il~~i 106 (108)
.+||+++.. +.|.|+|+|++.|++|
T Consensus 89 kKiCLSISgyHPEtWqPSWSiRTALlAl 116 (314)
T KOG0428|consen 89 KKICLSISGYHPETWQPSWSIRTALLAL 116 (314)
T ss_pred ceEEEEecCCCccccCcchhHHHHHHHH
Confidence 899999884 8899999999999876
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.4e-20 Score=151.55 Aligned_cols=104 Identities=31% Similarity=0.640 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeec--CccceeeCC
Q 033943 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTK--VFHPNINSN 81 (108)
Q Consensus 4 ~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~--i~Hpnv~~~ 81 (108)
+..+.|++.+..+.+.+|+|...++.|.-..+.|.|+.+|||++|+|.|.+.||++||.+||.+...+. .++||.|.+
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~ 933 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYED 933 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccc
Confidence 445677888888899999999999999999999999999999999999999999999999999999875 579999999
Q ss_pred CeEEecCCC-------CCCCCcCcHHHHHhhhh
Q 033943 82 GSICLDILK-------EQWSPALTISKMTLWCQ 107 (108)
Q Consensus 82 G~icl~~l~-------~~W~p~~~i~~il~~iq 107 (108)
|++|+++|+ +.|+|+.++.++|++||
T Consensus 934 g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q 966 (1101)
T KOG0895|consen 934 GKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQ 966 (1101)
T ss_pred cceehhhhccccCCCccccCcchhHHHHHHHhh
Confidence 999999994 56999999999999998
No 22
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.5e-18 Score=117.57 Aligned_cols=102 Identities=25% Similarity=0.443 Sum_probs=92.6
Q ss_pred HHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCC--CCCeEEEeecCccceeeC-C
Q 033943 5 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPF--KPPKVAFRTKVFHPNINS-N 81 (108)
Q Consensus 5 RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~--~pP~v~f~t~i~Hpnv~~-~ 81 (108)
.|+.|+..+.+.+.+||+|.|...|-+.|.++|.+ ..+.|+||.|+|+|.+|++||. +-|+|.|.+.++||+|.+ +
T Consensus 23 ~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~s 101 (258)
T KOG0429|consen 23 ALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKS 101 (258)
T ss_pred HHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCc
Confidence 47889999999999999999999999999999995 6778999999999999999995 789999999999999995 8
Q ss_pred CeEEecCCCCCCC-CcCcHHHHHhhhh
Q 033943 82 GSICLDILKEQWS-PALTISKMTLWCQ 107 (108)
Q Consensus 82 G~icl~~l~~~W~-p~~~i~~il~~iq 107 (108)
+.+|++-....|. -..+|.++|..+|
T Consensus 102 keLdl~raf~eWRk~ehhiwqvL~ylq 128 (258)
T KOG0429|consen 102 KELDLNRAFPEWRKEEHHIWQVLVYLQ 128 (258)
T ss_pred cceeHhhhhhhhhccccHHHHHHHHHH
Confidence 9999987777795 4568999999988
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=5.1e-18 Score=137.01 Aligned_cols=105 Identities=39% Similarity=0.706 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeec---Cccceee
Q 033943 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTK---VFHPNIN 79 (108)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~---i~Hpnv~ 79 (108)
.+|+++|++.+.++.++++.+.+.+.++...++.|.|+.+|||++|.|.|.|.||..||..||.+.+.+. .+.||.|
T Consensus 284 skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlY 363 (1101)
T KOG0895|consen 284 SKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLY 363 (1101)
T ss_pred HHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999976 5799999
Q ss_pred CCCeEEecCCC-------CCCCCc-CcHHHHHhhhh
Q 033943 80 SNGSICLDILK-------EQWSPA-LTISKMTLWCQ 107 (108)
Q Consensus 80 ~~G~icl~~l~-------~~W~p~-~~i~~il~~iq 107 (108)
.+|+||+++|. +.|+|. .++.++|..||
T Consensus 364 n~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ 399 (1101)
T KOG0895|consen 364 NDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQ 399 (1101)
T ss_pred cCceEEeeeeeecccccccCCCccccchhhhhhhhh
Confidence 99999999982 679999 89999999998
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4.3e-14 Score=91.09 Aligned_cols=105 Identities=30% Similarity=0.512 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhcCCCCC-eEEeecCC-C--cceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecCcccee
Q 033943 3 SKRILKELKDLQKDPPTS-CSAGPVAE-D--MFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNI 78 (108)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~-i~~~~~~~-n--~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv 78 (108)
.-||++|+.+-++.-.++ ++....++ | +..|..+|.||+.|+||+..|.++|...++||..||+|+|.+++--.-|
T Consensus 7 nfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gv 86 (138)
T KOG0896|consen 7 NFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGV 86 (138)
T ss_pred chhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeeccc
Confidence 357888888777664444 44443333 3 6789999999999999999999999999999999999999999977777
Q ss_pred e-CCCeEEecCC--CCCCCCcCcHHHHHhhhh
Q 033943 79 N-SNGSICLDIL--KEQWSPALTISKMTLWCQ 107 (108)
Q Consensus 79 ~-~~G~icl~~l--~~~W~p~~~i~~il~~iq 107 (108)
. .+|.+--.-+ -.+|+-.|+++.+|.+++
T Consensus 87 n~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr 118 (138)
T KOG0896|consen 87 NSSNGVVDPRDITVLARWQRSYSIKMVLGQLR 118 (138)
T ss_pred ccCCCccCccccchhhcccccchhhHHHHhhh
Confidence 7 4666655332 388999999999998876
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.4e-10 Score=72.00 Aligned_cols=58 Identities=22% Similarity=0.498 Sum_probs=49.4
Q ss_pred eEEEEEECCCCCCCCCCeEEEeecC-ccceeeCCCeEEecCCC-CCCCCcCcHHHHHhhh
Q 033943 49 VFLVSIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILK-EQWSPALTISKMTLWC 106 (108)
Q Consensus 49 ~f~~~l~fp~~YP~~pP~v~f~t~i-~Hpnv~~~G~icl~~l~-~~W~p~~~i~~il~~i 106 (108)
..-+.+.|++|||+.||.+|...+. --..|-.+|+||+.+|. ++|+.+|+|+.++++|
T Consensus 12 ~ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qi 71 (122)
T KOG0897|consen 12 NILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQI 71 (122)
T ss_pred eeEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHH
Confidence 3557788999999999999998775 34556689999999995 7799999999999886
No 26
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.99 E-value=2.5e-10 Score=74.57 Aligned_cols=95 Identities=20% Similarity=0.311 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCCCCCCCe----------EEEEEECCCCCCCCCCeEEEee-
Q 033943 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGV----------FLVSIHFPPDYPFKPPKVAFRT- 71 (108)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~g~~----------f~~~l~fp~~YP~~pP~v~f~t- 71 (108)
..||..||+.|.+ +++.++++-..|.-.=.-++||-|.|.+ |.+++.+|..||..||.|....
T Consensus 26 ~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeL 99 (161)
T PF08694_consen 26 VQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPEL 99 (161)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGG
T ss_pred HHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceecccc
Confidence 5799999999876 5655666666676555557777777765 6677888999999999998753
Q ss_pred cCccceeeCCCeEEecCCC----CCCCCcCcHHHHH
Q 033943 72 KVFHPNINSNGSICLDILK----EQWSPALTISKMT 103 (108)
Q Consensus 72 ~i~Hpnv~~~G~icl~~l~----~~W~p~~~i~~il 103 (108)
.--....|.+|+||++... ..-.|.++|.+.|
T Consensus 100 dGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 100 DGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 2235677889999999885 3348999998876
No 27
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.81 E-value=1e-08 Score=66.99 Aligned_cols=62 Identities=29% Similarity=0.739 Sum_probs=55.1
Q ss_pred CCCeEEEEEECCCCCCCCCCeEEEeecC---ccceeeCCCeEEe---cCCCCCCCCcCcHHHHHhhhh
Q 033943 46 AGGVFLVSIHFPPDYPFKPPKVAFRTKV---FHPNINSNGSICL---DILKEQWSPALTISKMTLWCQ 107 (108)
Q Consensus 46 ~g~~f~~~l~fp~~YP~~pP~v~f~t~i---~Hpnv~~~G~icl---~~l~~~W~p~~~i~~il~~iq 107 (108)
.|+.+.+++.+|++||..||.|....+. +-|||+.+|.+|+ +..-+.|.|.-.+.++|.+.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~ 101 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAI 101 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHH
Confidence 6799999999999999999999998654 6899999999999 777889999999988887654
No 28
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=2.3e-07 Score=60.07 Aligned_cols=95 Identities=20% Similarity=0.334 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCCCCCCCe----------EEEEEECCCCCCCCCCeEEEeec
Q 033943 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGV----------FLVSIHFPPDYPFKPPKVAFRTK 72 (108)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~g~~----------f~~~l~fp~~YP~~pP~v~f~t~ 72 (108)
.+||..||+.|.+ +++.++++-..|.-.-..++||-|-|.+ |.+++.+|-.||..+|.+....-
T Consensus 29 vqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 5799999999976 5666666777787666668899888866 56677779999999999876421
Q ss_pred -CccceeeCCCeEEecCCC-CCC---CCcCcHHHHH
Q 033943 73 -VFHPNINSNGSICLDILK-EQW---SPALTISKMT 103 (108)
Q Consensus 73 -i~Hpnv~~~G~icl~~l~-~~W---~p~~~i~~il 103 (108)
--.-..+.+|+||+.-.. .-| .|.++|.+.+
T Consensus 103 dgktakmyrggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 103 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred CchhhhhhcCceEeeccccchhhhhcCcchhHHHHH
Confidence 123356779999996553 335 6777877654
No 29
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.45 E-value=8.9e-07 Score=57.05 Aligned_cols=73 Identities=27% Similarity=0.556 Sum_probs=49.4
Q ss_pred cceEEEEEeCCCCCCCCCCeEE--EEEECCCCCCCCCCeEEEeecC-----ccceeeCCCeEEecCCCCCCCC-cCcHHH
Q 033943 30 MFHWQATIMGPPDSPYAGGVFL--VSIHFPPDYPFKPPKVAFRTKV-----FHPNINSNGSICLDILKEQWSP-ALTISK 101 (108)
Q Consensus 30 ~~~w~~~i~gp~~tpy~g~~f~--~~l~fp~~YP~~pP~v~f~t~i-----~Hpnv~~~G~icl~~l~~~W~p-~~~i~~ 101 (108)
+....++|.- .|+|..|. +.+-+|.+||.+||.+...... -+.+|+.+|++.+..| ++|++ ..++.+
T Consensus 32 LL~L~Gtipi----~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~ 106 (121)
T PF05743_consen 32 LLCLYGTIPI----TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEEE----CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHH
T ss_pred EEEEecCccc----ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHH
Confidence 4455555542 68888885 6677799999999999886331 2449999999999988 77977 788888
Q ss_pred HHhhhh
Q 033943 102 MTLWCQ 107 (108)
Q Consensus 102 il~~iq 107 (108)
++..++
T Consensus 107 lv~~l~ 112 (121)
T PF05743_consen 107 LVQELQ 112 (121)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887664
No 30
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.0012 Score=49.05 Aligned_cols=66 Identities=24% Similarity=0.540 Sum_probs=48.0
Q ss_pred eCCCCCCCCCCeEEE--EEECCCCCCCCCCeEEEeec-----CccceeeCCCeEEecCCCCCCCCc-CcHHHHHh
Q 033943 38 MGPPDSPYAGGVFLV--SIHFPPDYPFKPPKVAFRTK-----VFHPNINSNGSICLDILKEQWSPA-LTISKMTL 104 (108)
Q Consensus 38 ~gp~~tpy~g~~f~~--~l~fp~~YP~~pP~v~f~t~-----i~Hpnv~~~G~icl~~l~~~W~p~-~~i~~il~ 104 (108)
.|---.+|.|.+|.+ .+-+.+.||..||.+..... -.|-+|+.+|+|.+..| .+|.|. ..+..++.
T Consensus 56 ~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL-h~W~~pssdLv~Liq 129 (365)
T KOG2391|consen 56 DGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL-HNWDPPSSDLVGLIQ 129 (365)
T ss_pred cCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-ccCCCccchHHHHHH
Confidence 343345788888775 45559999999999977521 13899999999999999 668655 45555543
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=97.35 E-value=0.0012 Score=40.94 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeC--CCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecC
Q 033943 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMG--PPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKV 73 (108)
Q Consensus 4 ~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~g--p~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i 73 (108)
.+...|+..|+.--++.. ......+...+.+.+.+ ...+.-....+.+.+.||++||..+|.|.+.+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 467788888876544443 22233445556666632 2334445568999999999999999999987654
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.88 E-value=0.01 Score=36.35 Aligned_cols=27 Identities=15% Similarity=0.411 Sum_probs=23.0
Q ss_pred CCCeEEEEEECCCCCCCCCCeEEEeec
Q 033943 46 AGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (108)
Q Consensus 46 ~g~~f~~~l~fp~~YP~~pP~v~f~t~ 72 (108)
....+.+.+.+|++||.++|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999988754
No 33
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.69 E-value=0.021 Score=36.84 Aligned_cols=88 Identities=20% Similarity=0.340 Sum_probs=56.6
Q ss_pred CCeEEeecCCCcceEEEEEeC--CCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecCc-------cceee-----CCCeE
Q 033943 19 TSCSAGPVAEDMFHWQATIMG--PPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVF-------HPNIN-----SNGSI 84 (108)
Q Consensus 19 ~~i~~~~~~~n~~~w~~~i~g--p~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i~-------Hpnv~-----~~G~i 84 (108)
.|+..+...+.-..|.+ |.| .+.+.|....-.+-|.+|.+||..+|.+.+..+-. .|+-. -.|+.
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~ 90 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRT 90 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCee
Confidence 45666666666666765 655 66677999999999999999999998877665422 12111 02332
Q ss_pred Ee--cCCCCCCCCcC-cHHHHHhhhh
Q 033943 85 CL--DILKEQWSPAL-TISKMTLWCQ 107 (108)
Q Consensus 85 cl--~~l~~~W~p~~-~i~~il~~iq 107 (108)
-- |-....|.|.. +|.+.|..|+
T Consensus 91 wQrWSRH~~~W~P~~D~l~T~l~~v~ 116 (122)
T PF14462_consen 91 WQRWSRHNNPWRPGVDDLWTHLARVE 116 (122)
T ss_pred eeeecCCCCCCCCCCCcHHHHHHHHH
Confidence 11 22235698976 5777776654
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=96.39 E-value=0.0043 Score=41.89 Aligned_cols=56 Identities=32% Similarity=0.494 Sum_probs=44.5
Q ss_pred EEEECCCCCCCCCCeEEEeecCc---cceeeCC-----CeEEecCCC-CCCCCcCcHHHHHhhhh
Q 033943 52 VSIHFPPDYPFKPPKVAFRTKVF---HPNINSN-----GSICLDILK-EQWSPALTISKMTLWCQ 107 (108)
Q Consensus 52 ~~l~fp~~YP~~pP~v~f~t~i~---Hpnv~~~-----G~icl~~l~-~~W~p~~~i~~il~~iq 107 (108)
+.+.|+.+||..+|.|.+....| +||++.. .++|+.--. .+|.+..|++.+|..|+
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~ 121 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLF 121 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHH
Confidence 56889999999999877765433 5888865 789996553 56999999999998774
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=92.59 E-value=0.13 Score=37.93 Aligned_cols=81 Identities=20% Similarity=0.459 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeecCccceeeCCCe
Q 033943 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83 (108)
Q Consensus 4 ~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~ 83 (108)
++|.+|+.++..+....+. .++++...++.+.. + .....+++.++.+||.++|.+...-++ .
T Consensus 102 s~ll~EIe~IGW~kl~~i~---~d~~ls~i~l~~~D--~----~R~H~l~l~l~~~yp~~~p~~~~~~P~-~-------- 163 (291)
T PF09765_consen 102 SNLLKEIEAIGWDKLVQIQ---FDDDLSTIKLKIFD--S----SRQHYLELKLPSNYPFEPPSCSLDLPI-P-------- 163 (291)
T ss_dssp -CHHHHHHHHHCGCCEEEE---E-CCCSEEEEEEET--T----CEEEEEEEETTTTTTTSEEEECS-TTS----------
T ss_pred HHHHHHHHHhccccceEEe---cCCCccEEEEEEEc--C----CceEEEEEEECCCCCCCCceeeCCCCc-c--------
Confidence 5677888887665333222 36778887777772 1 167889999999999999974332221 1
Q ss_pred EEecCCCCCCCC-cCcHHHHHhhhh
Q 033943 84 ICLDILKEQWSP-ALTISKMTLWCQ 107 (108)
Q Consensus 84 icl~~l~~~W~p-~~~i~~il~~iq 107 (108)
+...|++ ..++.+++.+.+
T Consensus 164 -----~~~~w~~~~ssL~~v~~qF~ 183 (291)
T PF09765_consen 164 -----FSLSWSPSQSSLKDVVQQFQ 183 (291)
T ss_dssp -----HHHHHHCHT-SHHHHHHHHH
T ss_pred -----hhhhhcccccCHHHHHHHHH
Confidence 1135888 778888877654
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.78 E-value=2.3 Score=35.51 Aligned_cols=67 Identities=12% Similarity=0.154 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCC-CCCeEEEeec
Q 033943 5 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPF-KPPKVAFRTK 72 (108)
Q Consensus 5 RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~-~pP~v~f~t~ 72 (108)
-|..|+.-|-. ....+.++-.+-.-..-.+.+.+|-.--=.....++.+.||.+||. .+|.+.|..+
T Consensus 424 nLgeE~S~Ig~-k~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 424 NLGEEFSLIGV-KIRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hHHhHHhHhhc-cccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 35555555432 2233333322333355667777644333223456899999999999 5788888753
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=88.97 E-value=1.4 Score=31.01 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCCCCe-EEeecCCCcceEEEEEeCCCCC--CCCCCeEEEEEECCCCCCCCCCeEEEe
Q 033943 7 LKELKDLQKDPPTSC-SAGPVAEDMFHWQATIMGPPDS--PYAGGVFLVSIHFPPDYPFKPPKVAFR 70 (108)
Q Consensus 7 ~~E~~~l~~~~~~~i-~~~~~~~n~~~w~~~i~gp~~t--py~g~~f~~~l~fp~~YP~~pP~v~f~ 70 (108)
.+|+..|...-+... .+ .+.+...+.+.|.-..+. -+.+ .+.+.+.++.+||.+||-+.+.
T Consensus 8 e~E~EaLeSIY~de~~~i--~~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 8 EEELEALESIYPDEFKHI--NSEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred HHHHHHHHHhccchhhhh--hccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceecc
Confidence 346666655433333 22 222333355666521111 1223 7889999999999999999443
No 38
>smart00340 HALZ homeobox associated leucin zipper.
Probab=81.68 E-value=1.4 Score=23.09 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhcC
Q 033943 3 SKRILKELKDLQKD 16 (108)
Q Consensus 3 ~~RL~~E~~~l~~~ 16 (108)
++||++|+++|...
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 68999999999864
No 39
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=69.49 E-value=9.5 Score=25.01 Aligned_cols=24 Identities=29% Similarity=0.658 Sum_probs=21.9
Q ss_pred CCeEEEEEECCCCCC-CCCCeEEEe
Q 033943 47 GGVFLVSIHFPPDYP-FKPPKVAFR 70 (108)
Q Consensus 47 g~~f~~~l~fp~~YP-~~pP~v~f~ 70 (108)
.|.|.|.-.+|-.|| ..||.|.|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 488999999999999 999999886
No 40
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=67.55 E-value=10 Score=26.11 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=22.4
Q ss_pred CCeEEEEEECCCCCCCCCCeEEEee
Q 033943 47 GGVFLVSIHFPPDYPFKPPKVAFRT 71 (108)
Q Consensus 47 g~~f~~~l~fp~~YP~~pP~v~f~t 71 (108)
.|.|.|+=.+|--||..||.|.|.-
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEE
Confidence 4789999999999999999998863
No 41
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=66.22 E-value=8.3 Score=28.86 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=22.6
Q ss_pred CeEEEEEECCCCCCCCCCeEEEeec
Q 033943 48 GVFLVSIHFPPDYPFKPPKVAFRTK 72 (108)
Q Consensus 48 ~~f~~~l~fp~~YP~~pP~v~f~t~ 72 (108)
.++.+.+..+..||.+.|+|....+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 6788999999999999999999864
No 42
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=65.07 E-value=3.3 Score=28.11 Aligned_cols=14 Identities=43% Similarity=0.589 Sum_probs=11.8
Q ss_pred ceeeCCCeEEecCC
Q 033943 76 PNINSNGSICLDIL 89 (108)
Q Consensus 76 pnv~~~G~icl~~l 89 (108)
+||+.+|+||+.-.
T Consensus 98 ~NV~~~g~vC~G~~ 111 (175)
T PF14460_consen 98 FNVYSNGSVCWGNN 111 (175)
T ss_pred cccCCCCcEeeCCC
Confidence 49999999999663
No 43
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=62.39 E-value=16 Score=24.52 Aligned_cols=25 Identities=20% Similarity=0.527 Sum_probs=22.0
Q ss_pred CCeEEEEEECCCCCC-----CCCCeEEEee
Q 033943 47 GGVFLVSIHFPPDYP-----FKPPKVAFRT 71 (108)
Q Consensus 47 g~~f~~~l~fp~~YP-----~~pP~v~f~t 71 (108)
.|.|.|+-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 378999999999999 8999998863
No 44
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=62.33 E-value=2.4 Score=29.48 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=23.7
Q ss_pred CCeEEecCCCCCCCCcCcHHHHHhhhhC
Q 033943 81 NGSICLDILKEQWSPALTISKMTLWCQK 108 (108)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~iq~ 108 (108)
.+..|.+++...|+|.+|++..+.-+||
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkK 162 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKK 162 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHH
Confidence 5679999999899999999998766653
No 45
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=59.62 E-value=5.2 Score=28.58 Aligned_cols=14 Identities=43% Similarity=0.541 Sum_probs=11.7
Q ss_pred ceeeCCCeEEecCC
Q 033943 76 PNINSNGSICLDIL 89 (108)
Q Consensus 76 pnv~~~G~icl~~l 89 (108)
+||+.+|+||+.-.
T Consensus 139 fNV~~~G~VC~G~~ 152 (228)
T TIGR03737 139 FNVWSNGEICAGNA 152 (228)
T ss_pred CccCCCCeEeeCCC
Confidence 39999999999654
No 46
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=58.30 E-value=17 Score=27.40 Aligned_cols=34 Identities=32% Similarity=0.678 Sum_probs=29.5
Q ss_pred CCCCCeEEEEEECCCCCCCCCCeEEEee-cCccce
Q 033943 44 PYAGGVFLVSIHFPPDYPFKPPKVAFRT-KVFHPN 77 (108)
Q Consensus 44 py~g~~f~~~l~fp~~YP~~pP~v~f~t-~i~Hpn 77 (108)
||.|...+-++.|...||..||-+.|.. .-|+|.
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 6899999999999999999999999963 347773
No 47
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=54.29 E-value=33 Score=24.97 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=32.3
Q ss_pred CcceEEEEEeCCCCCCCCC---CeEEEEEECC-----CCCCCCCCeEEEeecCccc
Q 033943 29 DMFHWQATIMGPPDSPYAG---GVFLVSIHFP-----PDYPFKPPKVAFRTKVFHP 76 (108)
Q Consensus 29 n~~~w~~~i~gp~~tpy~g---~~f~~~l~fp-----~~YP~~pP~v~f~t~i~Hp 76 (108)
|..-|++..+..+.-..+| ..|+..+.++ -|-||.||+|..+++-|..
T Consensus 101 Dp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft~ 156 (276)
T PF00845_consen 101 DPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFTE 156 (276)
T ss_pred CCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeecccCc
Confidence 4455887777433333333 3366777765 6899999999999886543
No 48
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=54.02 E-value=46 Score=20.24 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=20.6
Q ss_pred CCCCeEEEEEECCCCCCCCCCeEEEeec
Q 033943 45 YAGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (108)
Q Consensus 45 y~g~~f~~~l~fp~~YP~~pP~v~f~t~ 72 (108)
-+|..+.|.-.-|+.|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 45777888888899999 588888754
No 49
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=54.01 E-value=52 Score=23.23 Aligned_cols=46 Identities=24% Similarity=0.506 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCC-CCCCCeEEEEEECCCC
Q 033943 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDS-PYAGGVFLVSIHFPPD 59 (108)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~t-py~g~~f~~~l~fp~~ 59 (108)
|..|+...++++++. ..+...-|.+.+. |... -| || |.|.+.|.++
T Consensus 10 ~~eR~~e~~~~~k~~---------L~~a~~GW~~~yy-p~~~~~~-GG-y~f~~kF~~~ 56 (235)
T PF14135_consen 10 PAERINEALAEYKKI---------LTSAPNGWKLEYY-PKTDQSY-GG-YTFLMKFDDD 56 (235)
T ss_pred HHHHHHHHHHHHHHH---------HhcCCCceEEEEE-CCCCccC-Cc-EEEEEEECCC
Confidence 678998877777652 2222344777777 3433 23 33 7777777654
No 50
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=53.54 E-value=25 Score=26.60 Aligned_cols=25 Identities=28% Similarity=0.584 Sum_probs=21.4
Q ss_pred CeEEEEEECCCCCCCCCCeEEEeec
Q 033943 48 GVFLVSIHFPPDYPFKPPKVAFRTK 72 (108)
Q Consensus 48 ~~f~~~l~fp~~YP~~pP~v~f~t~ 72 (108)
-.|-+.+.+|..||.+.|.++|.+.
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS~ 330 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQSV 330 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEee
Confidence 4577888899999999999999864
No 51
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=52.88 E-value=15 Score=24.00 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=21.9
Q ss_pred CCCcceEEEEEeCCCCCCCC-CCeEEEEEEC
Q 033943 27 AEDMFHWQATIMGPPDSPYA-GGVFLVSIHF 56 (108)
Q Consensus 27 ~~n~~~w~~~i~gp~~tpy~-g~~f~~~l~f 56 (108)
.+|...|.|++.|++|++.. ..+|-+.+.|
T Consensus 44 PGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 44 PGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred CCCCcceEEEEECCCCcceeccccchheeeH
Confidence 46778899999999998876 3455555554
No 52
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=52.45 E-value=49 Score=19.73 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=26.6
Q ss_pred ceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEeec
Q 033943 31 FHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (108)
Q Consensus 31 ~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t~ 72 (108)
..|.+.++|+.+.--..-.=++.+.+.+.|+. |...+..+
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 57999999977765555667788888888876 55555444
No 53
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=51.28 E-value=16 Score=29.53 Aligned_cols=29 Identities=34% Similarity=0.827 Sum_probs=24.3
Q ss_pred CCCCCCeEEEEEECCCCCCC---CCCeEEEeec
Q 033943 43 SPYAGGVFLVSIHFPPDYPF---KPPKVAFRTK 72 (108)
Q Consensus 43 tpy~g~~f~~~l~fp~~YP~---~pP~v~f~t~ 72 (108)
+||.=|.|.+ +.+|++||+ +-|.+.|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4777788886 567999999 7899999987
No 54
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=51.23 E-value=28 Score=24.13 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.1
Q ss_pred CCeEEEEEECCCCCCC-----CCCeEEEe
Q 033943 47 GGVFLVSIHFPPDYPF-----KPPKVAFR 70 (108)
Q Consensus 47 g~~f~~~l~fp~~YP~-----~pP~v~f~ 70 (108)
.|.|.|+-..|-.||. .||.|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3779999999999998 89998875
No 55
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=48.40 E-value=34 Score=23.55 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.0
Q ss_pred CeEEEEEECCCCCCC-----CCCeEEEe
Q 033943 48 GVFLVSIHFPPDYPF-----KPPKVAFR 70 (108)
Q Consensus 48 ~~f~~~l~fp~~YP~-----~pP~v~f~ 70 (108)
|.|.|+-.+|--||. .||.|.|.
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 789999999999995 88888765
No 56
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=48.01 E-value=14 Score=20.84 Aligned_cols=13 Identities=38% Similarity=0.664 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhc
Q 033943 3 SKRILKELKDLQK 15 (108)
Q Consensus 3 ~~RL~~E~~~l~~ 15 (108)
.+||++||+++.-
T Consensus 36 r~rL~kEL~d~D~ 48 (59)
T PF12065_consen 36 RQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHccc
Confidence 3689999998854
No 57
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=44.54 E-value=48 Score=23.03 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCC
Q 033943 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDS 43 (108)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~t 43 (108)
.+|+++|++.+.+.-...++..|.-+-...+.+.+..-.++
T Consensus 121 ~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD~ 161 (203)
T KOG3285|consen 121 LKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKDT 161 (203)
T ss_pred HHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCCc
Confidence 68999999999998888888888777778888888755544
No 58
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=42.39 E-value=17 Score=24.62 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEee---cCccceeeCCC
Q 033943 6 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRT---KVFHPNINSNG 82 (108)
Q Consensus 6 L~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t---~i~Hpnv~~~G 82 (108)
+..++++.+..-..|+++-...+ ++.+ .|-+-.--... -.+||.|-+.- .--|+-+..+|
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~------------~~~~-~G~Tvss~~Sv----SldPPlvlv~l~~~s~~~~~i~~sg 68 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAG------------DAGR-CGITATAVCSV----TDTPPSVMVCINANSAMNPVFQGNG 68 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEec------------CCCc-EEEEEEEEEEe----EcCCCEEEEEECCCCchhHHHHhCC
Confidence 45678888888888887643221 1122 12221111111 24799988763 35688888999
Q ss_pred eEEecCCC
Q 033943 83 SICLDILK 90 (108)
Q Consensus 83 ~icl~~l~ 90 (108)
.+|+++|.
T Consensus 69 ~F~VnvL~ 76 (170)
T PRK15486 69 KLCINVLN 76 (170)
T ss_pred eEEEEECh
Confidence 99999995
No 59
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.97 E-value=29 Score=27.11 Aligned_cols=21 Identities=38% Similarity=0.967 Sum_probs=15.0
Q ss_pred EEEEEECCCCCCC-CCCeEEEe
Q 033943 50 FLVSIHFPPDYPF-KPPKVAFR 70 (108)
Q Consensus 50 f~~~l~fp~~YP~-~pP~v~f~ 70 (108)
..+.+.+|++||. +||.+...
T Consensus 76 ivlkf~LP~~YPs~spP~f~l~ 97 (445)
T KOG1814|consen 76 IVLKFHLPNDYPSVSPPKFELK 97 (445)
T ss_pred eeeeeecCCccccCCCCceeee
Confidence 3467788999998 66765543
No 60
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=40.43 E-value=20 Score=20.01 Aligned_cols=15 Identities=20% Similarity=0.424 Sum_probs=9.0
Q ss_pred CCCCCcCcHHHHHhh
Q 033943 91 EQWSPALTISKMTLW 105 (108)
Q Consensus 91 ~~W~p~~~i~~il~~ 105 (108)
-+|.|.++|++++..
T Consensus 36 LgW~p~~~L~~~i~~ 50 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRD 50 (62)
T ss_dssp C----SSSHHHHHHH
T ss_pred hCCCcCCCHHHHHHH
Confidence 369999999999854
No 61
>TIGR02296 HpaC 4-hydroxyphenylacetate 3-monooxygenase, reductase component. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.
Probab=37.14 E-value=19 Score=23.80 Aligned_cols=30 Identities=27% Similarity=0.639 Sum_probs=23.9
Q ss_pred CCCCeEEEee---cCccceeeCCCeEEecCCCC
Q 033943 62 FKPPKVAFRT---KVFHPNINSNGSICLDILKE 91 (108)
Q Consensus 62 ~~pP~v~f~t---~i~Hpnv~~~G~icl~~l~~ 91 (108)
.+||.|.+.- .--|+.+..+|..|+++|.+
T Consensus 36 ~~PP~v~v~l~~~s~t~~~i~~~g~F~VnvL~~ 68 (154)
T TIGR02296 36 DTPPTVMVCINRNSAMNPIFQENGKLCINVLAH 68 (154)
T ss_pred cCCCEEEEEECCCCchhHHHHhCCeEEEEECcH
Confidence 5899988762 34688888999999999953
No 62
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=37.10 E-value=1e+02 Score=24.23 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=12.5
Q ss_pred eEEEEEECCCCCCCC
Q 033943 49 VFLVSIHFPPDYPFK 63 (108)
Q Consensus 49 ~f~~~l~fp~~YP~~ 63 (108)
...+.+.||.+|+..
T Consensus 210 ~k~i~vtFP~dy~a~ 224 (441)
T COG0544 210 EKDIKVTFPEDYHAE 224 (441)
T ss_pred eeEEEEEcccccchh
Confidence 367889999999983
No 63
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=34.82 E-value=68 Score=23.71 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=20.6
Q ss_pred CCeEEEEEECCCCCC------------------CCCCeEEEe
Q 033943 47 GGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (108)
Q Consensus 47 g~~f~~~l~fp~~YP------------------~~pP~v~f~ 70 (108)
.|.|.|+-.+|--|| ..||.|.|.
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 478999999999997 578998885
No 64
>TIGR00628 ung uracil-DNA glycosylase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.27 E-value=39 Score=23.84 Aligned_cols=37 Identities=24% Similarity=0.503 Sum_probs=22.1
Q ss_pred CcceEEEEEeCCCCCCCCC--CeEEEEEECCCCCCCCCCeEE
Q 033943 29 DMFHWQATIMGPPDSPYAG--GVFLVSIHFPPDYPFKPPKVA 68 (108)
Q Consensus 29 n~~~w~~~i~gp~~tpy~g--~~f~~~l~fp~~YP~~pP~v~ 68 (108)
.+.+.+|+|.|-+ ||.+ ..-=+-+..+++.+. ||.++
T Consensus 49 p~~~vKVVIlGQD--PYh~~gqA~GLaFSv~~~~~~-PpSL~ 87 (212)
T TIGR00628 49 PPEDVKVVILGQD--PYHGPGQAHGLAFSVKPGVPI-PPSLK 87 (212)
T ss_pred ChhheEEEEecCC--CCCCCCCcceeeeECCCCCCC-CchHH
Confidence 4666899999955 6765 233333344556553 66544
No 65
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=33.00 E-value=79 Score=22.45 Aligned_cols=24 Identities=25% Similarity=0.657 Sum_probs=20.7
Q ss_pred CCeEEEEEECCCCCCC-------CCCeEEEe
Q 033943 47 GGVFLVSIHFPPDYPF-------KPPKVAFR 70 (108)
Q Consensus 47 g~~f~~~l~fp~~YP~-------~pP~v~f~ 70 (108)
.|.|.|+-..|--||. .||.|.|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4889999999999975 89999884
No 66
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=32.63 E-value=79 Score=23.27 Aligned_cols=24 Identities=25% Similarity=0.634 Sum_probs=20.8
Q ss_pred CCeEEEEEECCCCCC------------------CCCCeEEEe
Q 033943 47 GGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (108)
Q Consensus 47 g~~f~~~l~fp~~YP------------------~~pP~v~f~ 70 (108)
.|.|.|+-..|--|| ..||.|.|.
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 488999999999999 479998875
No 67
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=32.61 E-value=16 Score=17.86 Aligned_cols=15 Identities=27% Similarity=0.738 Sum_probs=8.7
Q ss_pred CccceeeCCCe-EEec
Q 033943 73 VFHPNINSNGS-ICLD 87 (108)
Q Consensus 73 i~Hpnv~~~G~-icl~ 87 (108)
-|||.++.+|+ .|-.
T Consensus 2 ~yHPg~~~~g~W~CC~ 17 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCK 17 (32)
T ss_dssp EE-SS-EETTCESSSS
T ss_pred CcCCCcccCCcCcCCC
Confidence 38999997776 4543
No 68
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=31.79 E-value=24 Score=23.30 Aligned_cols=17 Identities=35% Similarity=0.897 Sum_probs=13.4
Q ss_pred EEEEEECCCCCCCCCCe
Q 033943 50 FLVSIHFPPDYPFKPPK 66 (108)
Q Consensus 50 f~~~l~fp~~YP~~pP~ 66 (108)
|+-.-.+|.|||..+|.
T Consensus 104 YR~KW~LP~dYPMvAPn 120 (148)
T COG4957 104 YRAKWGLPPDYPMVAPN 120 (148)
T ss_pred HHHhcCCCCCCCccchH
Confidence 45556789999999885
No 69
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=31.50 E-value=86 Score=22.25 Aligned_cols=24 Identities=25% Similarity=0.652 Sum_probs=20.9
Q ss_pred CCeEEEEEECCCCCCC-------CCCeEEEe
Q 033943 47 GGVFLVSIHFPPDYPF-------KPPKVAFR 70 (108)
Q Consensus 47 g~~f~~~l~fp~~YP~-------~pP~v~f~ 70 (108)
.|.|.|+-.+|--||. .||.|.|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4889999999999986 89999884
No 70
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=31.24 E-value=91 Score=22.84 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=26.3
Q ss_pred CCCCCCCeEEEEEECCCCCCCCC--CeEEEee
Q 033943 42 DSPYAGGVFLVSIHFPPDYPFKP--PKVAFRT 71 (108)
Q Consensus 42 ~tpy~g~~f~~~l~fp~~YP~~p--P~v~f~t 71 (108)
.+.+.|..|++.+..|.+||-.. |.|.|+.
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 34678899999999999999988 9999975
No 71
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=30.64 E-value=89 Score=23.08 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=20.4
Q ss_pred CCeEEEEEECCCCCC------------------CCCCeEEEe
Q 033943 47 GGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (108)
Q Consensus 47 g~~f~~~l~fp~~YP------------------~~pP~v~f~ 70 (108)
.|.|.|+-..|--|| ..||.|.|.
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 488999999999997 578888875
No 72
>TIGR03615 RutF pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.
Probab=29.62 E-value=31 Score=22.82 Aligned_cols=66 Identities=18% Similarity=0.286 Sum_probs=39.8
Q ss_pred HHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCCCeEEEee---cCccceeeCCCeE
Q 033943 8 KELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRT---KVFHPNINSNGSI 84 (108)
Q Consensus 8 ~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~t---~i~Hpnv~~~G~i 84 (108)
.++++.+..-..|+.+-... + .+++ .|. .+.-=-.--.+||.+.+.- .--|+.+..+|..
T Consensus 4 ~~fr~am~~~~~gV~vVT~~-----------~-~~~~-~g~----tvss~~svS~~PP~v~v~l~~~s~t~~~i~~s~~F 66 (156)
T TIGR03615 4 QAFRDAMSRLGAAVNIITTD-----------G-PAGR-AGF----TASAVCSVTDTPPTLLVCLNRSASAYPAFKQNGTL 66 (156)
T ss_pred HHHHHHHhccCCCeEEEEee-----------c-CCCc-eeE----EEEeEeeccCCCCEEEEEeCCCcchhHHHHhCCeE
Confidence 46777777777777763221 1 1121 121 1111122345899998863 3457888899999
Q ss_pred EecCCC
Q 033943 85 CLDILK 90 (108)
Q Consensus 85 cl~~l~ 90 (108)
++++|.
T Consensus 67 ~VnvL~ 72 (156)
T TIGR03615 67 CVNTLA 72 (156)
T ss_pred EEEECc
Confidence 999995
No 73
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=28.96 E-value=1e+02 Score=22.78 Aligned_cols=24 Identities=21% Similarity=0.603 Sum_probs=20.1
Q ss_pred CCeEEEEEECCCCCC------------------CCCCeEEEe
Q 033943 47 GGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (108)
Q Consensus 47 g~~f~~~l~fp~~YP------------------~~pP~v~f~ 70 (108)
.|.|.|+-.+|..|| ..||.|.|.
T Consensus 184 dG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 184 EGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 488999999998887 578888875
No 74
>COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]
Probab=28.67 E-value=43 Score=22.39 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=23.6
Q ss_pred CCCCeEEEee---cCccceeeCCCeEEecCCCC
Q 033943 62 FKPPKVAFRT---KVFHPNINSNGSICLDILKE 91 (108)
Q Consensus 62 ~~pP~v~f~t---~i~Hpnv~~~G~icl~~l~~ 91 (108)
++||.|.+.- .--++++..+|..|++++.+
T Consensus 44 ~~PP~v~v~v~~~~~t~~~i~~~~~F~vNvl~~ 76 (176)
T COG1853 44 LEPPLVLVCVNKSSDTWPNIEETGEFVVNVLSE 76 (176)
T ss_pred CCCCEEEEEecCCcchhhhhhhcCEEEEEeCCH
Confidence 4688888763 34588999999999999964
No 75
>PHA03200 uracil DNA glycosylase; Provisional
Probab=28.21 E-value=58 Score=23.71 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=22.2
Q ss_pred cceEEEEEeCCCCCCCCCCe-EEEEEECCCCCCCCCCeEE
Q 033943 30 MFHWQATIMGPPDSPYAGGV-FLVSIHFPPDYPFKPPKVA 68 (108)
Q Consensus 30 ~~~w~~~i~gp~~tpy~g~~-f~~~l~fp~~YP~~pP~v~ 68 (108)
...-+|+|.|-+ ||.+|. --+-+..+++++. ||..+
T Consensus 82 ~~~vKVVIlGQD--PYh~gqA~GLaFSV~~~~~~-PpSL~ 118 (255)
T PHA03200 82 PEDVKVVIVGQD--PYHDGSACGLAFGTVRGRSA-PPSLK 118 (255)
T ss_pred hhheEEEEEecC--CCCCCccceEEEEeCCCCCC-CccHH
Confidence 455689999865 777643 2234445667664 66644
No 76
>TIGR01633 phi3626_gp14_N putative phage tail component, N-terminal domain. This model represents the best-conserved region of about 125 amino acids, toward the N-terminus, of a family of proteins from temperate phage of a number of Gram-positive bacteria. These phage proteins range in length from 230 to 525 amino acids.
Probab=27.60 E-value=1.5e+02 Score=18.06 Aligned_cols=57 Identities=14% Similarity=0.061 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCCCCC--CCCCCeEEEEEECCCCC
Q 033943 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDS--PYAGGVFLVSIHFPPDY 60 (108)
Q Consensus 3 ~~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~t--py~g~~f~~~l~fp~~Y 60 (108)
.++..++++.+.... ....+...++.-..|.+.+.+..+- ....|.+.+++.+|+-|
T Consensus 64 ~~~~~~~l~~~L~~~-~~~~L~f~dePd~yy~a~~~~~~~~~~~~~~~~~titF~c~dP~ 122 (124)
T TIGR01633 64 LRELFRELAGWLNSQ-EPVPLIFSDEPDKTYYARVDEEIDLDEDTTFGKGTLNFICPDPY 122 (124)
T ss_pred HHHHHHHHHHHhCCC-CCcceEeccCCCcEEEEEEcCccCHHHhhcccEEEEEEEecCCc
Confidence 345666777776543 2234444555556788888762211 12347777777776643
No 77
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=27.38 E-value=1.2e+02 Score=22.00 Aligned_cols=24 Identities=25% Similarity=0.692 Sum_probs=20.1
Q ss_pred CCeEEEEEECCCCCC------------------CCCCeEEEe
Q 033943 47 GGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (108)
Q Consensus 47 g~~f~~~l~fp~~YP------------------~~pP~v~f~ 70 (108)
.|.|.|+-..|.-|| ..||.|.|.
T Consensus 150 ~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~ 191 (246)
T TIGR02465 150 DGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYK 191 (246)
T ss_pred CCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEE
Confidence 488999999999997 468888875
No 78
>PF05709 Sipho_tail: Phage tail protein; InterPro: IPR008841 This family consists of several Siphovirus and other phage tail component proteins as well as some bacterial proteins of unknown function. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 4DIV_X 2X8K_C.
Probab=27.27 E-value=2.1e+02 Score=19.53 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEeCC---CCCCCCCCeEEEEEECCCCCCCC
Q 033943 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP---PDSPYAGGVFLVSIHFPPDYPFK 63 (108)
Q Consensus 4 ~RL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp---~~tpy~g~~f~~~l~fp~~YP~~ 63 (108)
.++.+++.++.... ....+...++.-..|.+.+.+. +.. ...+.+.+++..|+-|-.+
T Consensus 55 ~~~~~~l~~~l~~~-~~~~l~f~d~p~~~y~~~~~~~~~~~~~-~~~~~~ti~f~c~dPy~y~ 115 (249)
T PF05709_consen 55 EQKRRELASWLNPK-EPVKLIFDDDPDKYYYAKVSGSPDPDEG-NNSGTFTITFTCPDPYAYS 115 (249)
T ss_dssp HHHHHHHHHHH--S-S-EEEEETTSTT-EEEEEEEEEEE--SS-SSCEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHhhCcC-CCEEEEEECCCCEEEEEEECCccccccc-ceeEEEEEEEEECCceeee
Confidence 45667777776433 3377777777778888888763 222 2234566666655444444
No 79
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=26.92 E-value=1.4e+02 Score=24.67 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCCeEEeec----CCCcceEEEEEeCCCCCCCCCCeEEEEEECCCCCCCCC
Q 033943 6 ILKELKDLQKDPPTSCSAGPV----AEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKP 64 (108)
Q Consensus 6 L~~E~~~l~~~~~~~i~~~~~----~~n~~~w~~~i~gp~~tpy~g~~f~~~l~fp~~YP~~p 64 (108)
|++|+..|.. .+.|.++ ++|--...+.|. .+.-| -+++..|.+||...
T Consensus 624 lqgElarLD~----kF~v~ld~~~~~nN~I~liCkld-dk~lP------Pl~lsVP~~YPaq~ 675 (742)
T KOG4274|consen 624 LQGELARLDA----KFEVDLDHQRHDNNHIILICKLD-DKQLP------PLRLSVPTTYPAQN 675 (742)
T ss_pred HHHHHHhhcc----ceeecCCcccccCCeeEEEEEec-CCCCC------Ceeeeccccccccc
Confidence 6677777753 2333332 344333344444 44444 38999999999876
No 80
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=26.75 E-value=68 Score=24.19 Aligned_cols=40 Identities=23% Similarity=0.448 Sum_probs=26.8
Q ss_pred CCCCCe-EEEEEEC-----CCCCCCCCCeEEEeecCccceeeCCCe
Q 033943 44 PYAGGV-FLVSIHF-----PPDYPFKPPKVAFRTKVFHPNINSNGS 83 (108)
Q Consensus 44 py~g~~-f~~~l~f-----p~~YP~~pP~v~f~t~i~Hpnv~~~G~ 83 (108)
-|+.|. .-++..| -++-+...|+|.|.-.++||||-+.-+
T Consensus 283 ~w~~g~~ll~ddsf~ha~~~dgs~eds~rvV~~V~lwhpevq~~~r 328 (334)
T KOG3696|consen 283 CWAEGKCLLYDDSFLHALQHDGSSEDSPRVVFTVDLWHPEVQPAER 328 (334)
T ss_pred cccccceeEeechhhcccccCCCcccCceEEEEEeccCcccccccc
Confidence 355444 3344444 255566789999999999999985433
No 81
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=26.10 E-value=1.4e+02 Score=22.63 Aligned_cols=40 Identities=28% Similarity=0.539 Sum_probs=27.9
Q ss_pred ceEEEEEeCCCCC-CCCCCeEEEEEECC--CCCCCCCCeEEEe
Q 033943 31 FHWQATIMGPPDS-PYAGGVFLVSIHFP--PDYPFKPPKVAFR 70 (108)
Q Consensus 31 ~~w~~~i~gp~~t-py~g~~f~~~l~fp--~~YP~~pP~v~f~ 70 (108)
..|+..+.|-+++ -|++|.+++++.-. ++-=.+.|+|||-
T Consensus 197 dh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG 239 (345)
T COG3866 197 DHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFG 239 (345)
T ss_pred cCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEee
Confidence 4578889995444 78899999887642 3333467799985
No 82
>PF15572 Imm26: Immunity protein 26
Probab=25.97 E-value=1.4e+02 Score=18.46 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=15.3
Q ss_pred CCCCCCCCeEEEEEECCCCCCCCCCeEEEe
Q 033943 41 PDSPYAGGVFLVSIHFPPDYPFKPPKVAFR 70 (108)
Q Consensus 41 ~~tpy~g~~f~~~l~fp~~YP~~pP~v~f~ 70 (108)
++..+.|..|++ |..||++ +.|.|.
T Consensus 8 ~~~l~rG~i~R~----~~~ypye-~~VDFm 32 (96)
T PF15572_consen 8 EKYLWRGTIFRC----PGVYPYE-EVVDFM 32 (96)
T ss_pred CccEecceEEEe----cccCCCc-ccEEEE
Confidence 444555655554 6669988 555654
No 83
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=25.90 E-value=23 Score=29.93 Aligned_cols=23 Identities=22% Similarity=0.509 Sum_probs=0.0
Q ss_pred EEEEEECCCCCCCCCCeEEEeec
Q 033943 50 FLVSIHFPPDYPFKPPKVAFRTK 72 (108)
Q Consensus 50 f~~~l~fp~~YP~~pP~v~f~t~ 72 (108)
=-++|.+|.|||..+|.+.+...
T Consensus 716 PPl~l~vP~~YP~~sp~~~~~~~ 738 (799)
T PF09606_consen 716 PPLRLTVPADYPRQSPQCSVDRD 738 (799)
T ss_dssp -----------------------
T ss_pred CCeeEeCCCCCCccCCcCcccHH
Confidence 34788899999999999877543
No 84
>PRK00907 hypothetical protein; Provisional
Probab=25.15 E-value=29 Score=21.18 Aligned_cols=11 Identities=18% Similarity=0.676 Sum_probs=9.0
Q ss_pred EEECCCCCCCC
Q 033943 53 SIHFPPDYPFK 63 (108)
Q Consensus 53 ~l~fp~~YP~~ 63 (108)
.++||.+||++
T Consensus 11 liEFPc~fpiK 21 (92)
T PRK00907 11 GFQFPGTFELS 21 (92)
T ss_pred cEecCCCCeEE
Confidence 47899999974
No 85
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=24.61 E-value=43 Score=21.09 Aligned_cols=19 Identities=37% Similarity=0.805 Sum_probs=14.8
Q ss_pred CCeEEecCCCCCCCCcCcH
Q 033943 81 NGSICLDILKEQWSPALTI 99 (108)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i 99 (108)
+|.+|--.+..+|+|.+++
T Consensus 50 Gg~~CC~~~p~~W~pg~tv 68 (118)
T PF11745_consen 50 GGFTCCVSLPRKWRPGLTV 68 (118)
T ss_pred CceEEEEEcCCCCCCCCEE
Confidence 4556877777899998875
No 86
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=24.50 E-value=69 Score=17.30 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHhcCCC
Q 033943 2 ASKRILKELKDLQKDPP 18 (108)
Q Consensus 2 a~~RL~~E~~~l~~~~~ 18 (108)
+..|+..|+..+...+.
T Consensus 23 s~ERi~~El~kil~~~~ 39 (64)
T PF12627_consen 23 SKERIREELEKILSSPN 39 (64)
T ss_dssp -HHHHHHHHHHHHTSTT
T ss_pred CHHHHHHHHHHHHcCCC
Confidence 56899999999877654
No 87
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=23.94 E-value=1e+02 Score=18.99 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCCCCCCeEEEEEECCC
Q 033943 33 WQATIMGPPDSPYAGGVFLVSIHFPP 58 (108)
Q Consensus 33 w~~~i~gp~~tpy~g~~f~~~l~fp~ 58 (108)
.|+.+.|++..+=+|..+.++|.|-+
T Consensus 78 ~HlmL~g~~~~l~~G~~v~ltL~f~~ 103 (110)
T PF04314_consen 78 YHLMLMGLKRPLKPGDTVPLTLTFED 103 (110)
T ss_dssp CEEEEECESS-B-TTEEEEEEEEETT
T ss_pred EEEEEeCCcccCCCCCEEEEEEEECC
Confidence 68889998888888999999999854
No 88
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=22.90 E-value=1.3e+02 Score=16.56 Aligned_cols=20 Identities=25% Similarity=0.579 Sum_probs=11.5
Q ss_pred EEEEEECCCCCCCCCCeEEEe
Q 033943 50 FLVSIHFPPDYPFKPPKVAFR 70 (108)
Q Consensus 50 f~~~l~fp~~YP~~pP~v~f~ 70 (108)
+..++.|++.|.. ||.|.+.
T Consensus 3 ~~~~I~F~~~F~~-~P~V~~~ 22 (72)
T PF09458_consen 3 YSQTITFSKPFSS-PPQVIVS 22 (72)
T ss_dssp EEEEEE-SS--SS---EEEEE
T ss_pred eEEEeEcChhcCC-CCEEEEE
Confidence 5678999988886 8888764
No 89
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=21.88 E-value=2.5e+02 Score=18.58 Aligned_cols=52 Identities=21% Similarity=0.218 Sum_probs=35.6
Q ss_pred CCeEEeecCCCcceEEEEEeCCCCC-CCCCCeEEEEEECCCCCCCCCCeEEEeec
Q 033943 19 TSCSAGPVAEDMFHWQATIMGPPDS-PYAGGVFLVSIHFPPDYPFKPPKVAFRTK 72 (108)
Q Consensus 19 ~~i~~~~~~~n~~~w~~~i~gp~~t-py~g~~f~~~l~fp~~YP~~pP~v~f~t~ 72 (108)
.|......++|..+. ....|.-+ .|.|-.-.+.+.=...||--+|++.|.|+
T Consensus 85 ~g~iLA~ye~n~rDf--LfP~p~~~~~~~g~~revLM~~t~~FpGIaPklEfST~ 137 (140)
T PF14909_consen 85 AGEILAYYEENTRDF--LFPEPKLTPSYPGVDREVLMKRTSGFPGIAPKLEFSTK 137 (140)
T ss_pred CCcEEEEEeccccce--EcCCCCCCCCCCCCCEEEEeeccCCCCCCCceEEEEEE
Confidence 344444445555543 23334423 47788888999999999999999999875
No 90
>PHA03199 uracil DNA glycosylase; Provisional
Probab=21.86 E-value=69 Score=23.97 Aligned_cols=35 Identities=23% Similarity=0.468 Sum_probs=19.2
Q ss_pred cceEEEEEeCCCCCCCCC--CeEEEEEECCCCCCCCCCeE
Q 033943 30 MFHWQATIMGPPDSPYAG--GVFLVSIHFPPDYPFKPPKV 67 (108)
Q Consensus 30 ~~~w~~~i~gp~~tpy~g--~~f~~~l~fp~~YP~~pP~v 67 (108)
+..-+|+|.|-+ ||.+ -.--+-+..+++.+. ||..
T Consensus 137 ~~~VKVVILGQD--PYh~~gqA~GLaFSV~~gv~i-PPSL 173 (304)
T PHA03199 137 PEKIRVVIIGQD--PYHGAGHAHGLAFSVKRGIPI-PPSL 173 (304)
T ss_pred HHHcEEEEEecC--CCCCCCccceEEEecCCCCCC-CccH
Confidence 344589999855 7775 222333334555443 5554
No 91
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=21.73 E-value=1.9e+02 Score=22.44 Aligned_cols=71 Identities=14% Similarity=0.311 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCCCCeEEeecCCCcceEEE--EEeCCCCCCCCCCeEE---------EEEECCCCCCCCCCeEEEeecCc
Q 033943 6 ILKELKDLQKDPPTSCSAGPVAEDMFHWQA--TIMGPPDSPYAGGVFL---------VSIHFPPDYPFKPPKVAFRTKVF 74 (108)
Q Consensus 6 L~~E~~~l~~~~~~~i~~~~~~~n~~~w~~--~i~gp~~tpy~g~~f~---------~~l~fp~~YP~~pP~v~f~t~i~ 74 (108)
+..|.++|....|+.-.+...+. |++ .|. ..--+-.+.|+ +. .|...|++.||-+.+...+.
T Consensus 250 ne~Ev~Rir~eHPdd~~~vv~~~----~RvkG~L~--vsRAfGd~~lK~~~~n~e~l~~-~fr~~~~~t~PyltaeP~i~ 322 (390)
T KOG0700|consen 250 NEDEVRRIRSEHPDDPHIVVNKH----WRVKGILQ--VSRAFGDGYLKWPEFNQEPLLE-KFRIPYIGTPPYLTAEPSIT 322 (390)
T ss_pred cHHHHHHHHHhCCCCcceEeecc----ceeeEEEE--eeeeccceeecchhhccchhHh-hcCCCCCCCCCceeccceEE
Confidence 45677778776554433322222 543 333 22223333333 12 67889999999999998887
Q ss_pred cceeeCCCe
Q 033943 75 HPNINSNGS 83 (108)
Q Consensus 75 Hpnv~~~G~ 83 (108)
|-.+.++-+
T Consensus 323 ~HrL~p~Dk 331 (390)
T KOG0700|consen 323 HHKLTPNDK 331 (390)
T ss_pred EEEcCCCCe
Confidence 766665433
No 92
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=21.69 E-value=69 Score=24.45 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHhcCCCCCeEE
Q 033943 2 ASKRILKELKDLQKDPPTSCSA 23 (108)
Q Consensus 2 a~~RL~~E~~~l~~~~~~~i~~ 23 (108)
.-+||++|++.+....+.+..+
T Consensus 33 sP~~L~~em~~V~~~L~~~~~l 54 (361)
T PF12259_consen 33 SPKQLLDEMKNVSSHLPRDWSL 54 (361)
T ss_pred CHHHHHHHHHHHHhcCCccccc
Confidence 4689999999997766655543
No 93
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=21.44 E-value=1.7e+02 Score=21.26 Aligned_cols=24 Identities=25% Similarity=0.617 Sum_probs=19.9
Q ss_pred CCeEEEEEECCCCCC------------------CCCCeEEEe
Q 033943 47 GGVFLVSIHFPPDYP------------------FKPPKVAFR 70 (108)
Q Consensus 47 g~~f~~~l~fp~~YP------------------~~pP~v~f~ 70 (108)
.|.|.|+-..|--|| ..||.|.|.
T Consensus 156 ~G~y~f~Ti~P~~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 197 (256)
T cd03458 156 DGRYRFRTIRPVPYPIPPDGPTGELLEALGRHPWRPAHIHFM 197 (256)
T ss_pred CCCEEEEEECCCCccCCCCCcHHHHHHhcccCCCCCCeEEEE
Confidence 378999999999886 478988875
No 94
>PF11819 DUF3338: Domain of unknown function (DUF3338); InterPro: IPR021774 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. This presumed domain is about 130 amino acids in length.
Probab=21.03 E-value=52 Score=21.73 Aligned_cols=14 Identities=57% Similarity=1.469 Sum_probs=9.1
Q ss_pred ECCCCCCC----CCCeEE
Q 033943 55 HFPPDYPF----KPPKVA 68 (108)
Q Consensus 55 ~fp~~YP~----~pP~v~ 68 (108)
.+|.+||. .||.|+
T Consensus 68 ~LP~E~PL~pGEk~P~iR 85 (138)
T PF11819_consen 68 ELPPEYPLEPGEKPPKIR 85 (138)
T ss_pred cCCCccCCCCCCCCCccc
Confidence 35777776 467665
No 95
>PHA03204 uracil DNA glycosylase; Provisional
Probab=20.44 E-value=1.4e+02 Score=22.52 Aligned_cols=16 Identities=38% Similarity=0.575 Sum_probs=11.1
Q ss_pred cceEEEEEeCCCCCCCCC
Q 033943 30 MFHWQATIMGPPDSPYAG 47 (108)
Q Consensus 30 ~~~w~~~i~gp~~tpy~g 47 (108)
..+-+|+|.|-+ ||.+
T Consensus 151 ~~~VKVVILGQD--PYh~ 166 (322)
T PHA03204 151 PDHVKVVIVGQD--PYAN 166 (322)
T ss_pred hhHeEEEEEecC--CCCC
Confidence 344589999855 7775
No 96
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=20.31 E-value=94 Score=18.67 Aligned_cols=14 Identities=43% Similarity=0.544 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHhc
Q 033943 2 ASKRILKELKDLQK 15 (108)
Q Consensus 2 a~~RL~~E~~~l~~ 15 (108)
|.+||.+|+....+
T Consensus 8 ~vkRL~KE~~~Y~k 21 (90)
T PF02970_consen 8 VVKRLLKEEASYEK 21 (90)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57899998865543
Done!